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• 61. [Article] When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon

  This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more ...

  Citation × Citation Citation Abstract Copy Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close

• 62. [Image] The Water Report - The Oregon Water Resources Department: an interview with director Paul Cleary

  	Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/
  	Citation × Citation Citation Abstract Copy Title: The Water Report - The Oregon Water Resources Department: an interview with director Paul Cleary Author: Envirotech Publications Year: 2004, 2008, 2006 Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/ Title: The Water Report - The Oregon Water Resources Department: an interview with director Paul Cleary Author: Envirotech Publications Year: 2004, 2008, 2006 Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/ Close

• 63. [Article] Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs

  El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario ...

  Citation × Citation Citation Abstract Copy Title: Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs Author: Bisson, Peter A., Goodman, Daniel, Loudenslager, Eric J., Philipp, David P., Huntly, Nancy, Coutant, Charles C., Bilby, Robert, Whitney, Richard R., Williams, Richard N., Hanna, Susan S., Merrill, Erik, Riddell, Brian, Epifanio, John M., Liss, William, McDonald, Lyman L., Smoker, William El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario de la creacion del Consejo para la Conservacion y Poder del Noroeste y el 10 degree aniversario de la enmienda al Acto de Poder del Noroeste, que formaliza el arbitraje cientifico del Programa de Pesca y Vida Silvestre de dicho consejo, asi como de sus proyectos individuales. Durante la ultima decada, los autores del presente trabajo fungieron como arbitros de estos proyectos. Los esfuerzos de recuperacion en el Rio Columbia constituyen una iniciativa muy importante en cuanto a la rehabilitacion de pesquerias y ecosistemas. En este articulo se examinan algunas lecciones aprendidas durante el proceso de revision de investigacion, monitoreo y evaluacion de proyectos y su repercusion sobre el avance del conocimiento (manejo adaptativo) en el Programa de Pesca y Vida Silvestre de la Cuenca del Rio Columbia, uno de los programas de recuperacion mas ambiciosos y de mas largo plazo en los Estados Unidos de Norteamerica. Title: Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs Author: Bisson, Peter A., Goodman, Daniel, Loudenslager, Eric J., Philipp, David P., Huntly, Nancy, Coutant, Charles C., Bilby, Robert, Whitney, Richard R., Williams, Richard N., Hanna, Susan S., Merrill, Erik, Riddell, Brian, Epifanio, John M., Liss, William, McDonald, Lyman L., Smoker, William El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario de la creacion del Consejo para la Conservacion y Poder del Noroeste y el 10 degree aniversario de la enmienda al Acto de Poder del Noroeste, que formaliza el arbitraje cientifico del Programa de Pesca y Vida Silvestre de dicho consejo, asi como de sus proyectos individuales. Durante la ultima decada, los autores del presente trabajo fungieron como arbitros de estos proyectos. Los esfuerzos de recuperacion en el Rio Columbia constituyen una iniciativa muy importante en cuanto a la rehabilitacion de pesquerias y ecosistemas. En este articulo se examinan algunas lecciones aprendidas durante el proceso de revision de investigacion, monitoreo y evaluacion de proyectos y su repercusion sobre el avance del conocimiento (manejo adaptativo) en el Programa de Pesca y Vida Silvestre de la Cuenca del Rio Columbia, uno de los programas de recuperacion mas ambiciosos y de mas largo plazo en los Estados Unidos de Norteamerica. Close

• 64. [Article] Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor ...

  Citation × Citation Citation Abstract Copy Title: Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon Author: Orsi, J. A., Morris, J. F. T., Teel, D. J., Farley, E. V., Jr., Weitkamp, L. A., Trudel, M., Fisher, J. P., Sweeting, R. M., Hinton, S. A., Thiess, M. E. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uz8B2_Pn-Hs. Title: Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon Author: Orsi, J. A., Morris, J. F. T., Teel, D. J., Farley, E. V., Jr., Weitkamp, L. A., Trudel, M., Fisher, J. P., Sweeting, R. M., Hinton, S. A., Thiess, M. E. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uz8B2_Pn-Hs. Close

• 65. [Article] Life history and evolutionary adaptation of Pacific salmon and its application in management

  An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks ...

  Citation × Citation Citation Abstract Copy Title: Life history and evolutionary adaptation of Pacific salmon and its application in management Author: Wevers, Mary Jo An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks is presented. Species, stocks, and local populations are viewed as systems that are continuously adapting to changing environmental conditions. They have the potential capacity to evolve in different ways in different environments through both life history and evolutionary adaptation. Habitat organization forms a template for genus, species, stock, and local population life history organization. Harvesting, habitat alteration resulting from land use practices and other human activities can alter the organization and adaptive capacities of species and stocks, and thus their long term persistence. The adaptive capacity of Oncorhynchus relative to its habitat and management environment is examined at the species, stock, and local population levels. Life history characteristics of representative stocks and local populations are analyzed using Detrended Correspondence Analysis (DECORANA). Fresh water migration distance and latitude are used to "explain" ordination patterns of Oncorhynchus species in the North Pacific Basin. Fresh water migration difficulty and mean annual runoff are used to interpret life history patterns of Columbia Basin chinook salmon stocks. Upstream migration difficulty and fall water temperatures are used to explain the ordination patterns of local populations of Willamette spring chinook salmon. Fishery management practices are examined in terms of their impacts on the organization and adaptive capacity of species, stocks, and local populations of Oncorhynchus. Management generalizations and guidelines derived from the life history theory are applied to management of Willamette spring chinook salmon. Maintaining habitat changes in the Willamette Basin within the historic range of fluctuations will tend to maximize co-organization of local populations. Management activities should provide relatively constant habitat and fishery conditions for natural selection processes to "organize" life history traits over a period of at least a few generations. Fisheries should selectively harvest local populations that show a high degree of realization of their adaptive capacity. By focusing instead on maximizing the co-organization of stocks, their habitat and fishery environments, and protecting the adaptive capacities of stocks, we will go a long way toward providing long-term sustainability for social communities dependent on fisheries. Title: Life history and evolutionary adaptation of Pacific salmon and its application in management Author: Wevers, Mary Jo An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks is presented. Species, stocks, and local populations are viewed as systems that are continuously adapting to changing environmental conditions. They have the potential capacity to evolve in different ways in different environments through both life history and evolutionary adaptation. Habitat organization forms a template for genus, species, stock, and local population life history organization. Harvesting, habitat alteration resulting from land use practices and other human activities can alter the organization and adaptive capacities of species and stocks, and thus their long term persistence. The adaptive capacity of Oncorhynchus relative to its habitat and management environment is examined at the species, stock, and local population levels. Life history characteristics of representative stocks and local populations are analyzed using Detrended Correspondence Analysis (DECORANA). Fresh water migration distance and latitude are used to "explain" ordination patterns of Oncorhynchus species in the North Pacific Basin. Fresh water migration difficulty and mean annual runoff are used to interpret life history patterns of Columbia Basin chinook salmon stocks. Upstream migration difficulty and fall water temperatures are used to explain the ordination patterns of local populations of Willamette spring chinook salmon. Fishery management practices are examined in terms of their impacts on the organization and adaptive capacity of species, stocks, and local populations of Oncorhynchus. Management generalizations and guidelines derived from the life history theory are applied to management of Willamette spring chinook salmon. Maintaining habitat changes in the Willamette Basin within the historic range of fluctuations will tend to maximize co-organization of local populations. Management activities should provide relatively constant habitat and fishery conditions for natural selection processes to "organize" life history traits over a period of at least a few generations. Fisheries should selectively harvest local populations that show a high degree of realization of their adaptive capacity. By focusing instead on maximizing the co-organization of stocks, their habitat and fishery environments, and protecting the adaptive capacities of stocks, we will go a long way toward providing long-term sustainability for social communities dependent on fisheries. Close

• 66. [Article] Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin

  Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has ...

  Citation × Citation Citation Abstract Copy Title: Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin Author: Eiler, John H. Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has raised concerns over the future status of the returns, and severely impacted commercial and subsistence fisheries within the drainage. Management is further complicated by the mixed-stock composition of the run, the presence of other temporally similar salmon species, and the need to equitably allocate harvests between the numerous fisheries and user groups scattered throughout the basin. Detailed information is needed on Chinook salmon run characteristics to better understand and manage the returns, and facilitate conservation efforts. However, this goal is exacerbated by the massive size and remote nature of the basin, the large number of highly mobile fish, and the compressed timing of the run. To address these challenges, radio telemetry was used to determine the stock composition and spawning distribution of the returns, and the migratory characteristics of the fish. The migratory patterns exhibited by returning salmon provide a number of insights into the status of the run. Since the Yukon River is essentially free-flowing (i.e., not regulated), this study also presented an opportunity to document the distribution and upriver movements of large returns of wild Chinook salmon under natural conditions. During 2002-2004, returning adult Chinook salmon were captured in the lower Yukon River (approximately 300 km upriver from the river mouth), tagged with radio transmitters, and tracked upriver using remote tracking stations located on important migratory routes and major spawning tributaries. Aerial tracking surveys were used to locate fish in spawning areas and between stations. The fish responded well to the capture and handling procedures, with most (2,790, 98%) resuming upriver movements. Although the fish initially displayed a negative tagging response, with slower migration rates observed immediately after release, the duration of this response was relatively short (several days) and less severe as the fish moved upriver. Independent measures indicated that the swimming speeds and timing of the fish upriver from the tagging area were comparable to untagged fish, suggesting that the tagging methods used were relatively benign. Fish returned to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging area. Distribution patterns were similar across years, suggesting that the principal components of the run were identified. Most spawning fish were clustered in a number of key tributaries, with smaller numbers of fish located in other spatially isolated areas. The fish typically returned to clear water tributaries that were relatively entrenched, had moderate gradients, and were associated with upland areas. Fish were largely absent in lowland reaches characterized by meandering, low gradient, highly alluvial channels often associated with main river floodplains. There was suggestive evidence of mainstem spawning in reaches of the Upper Yukon. The status of fish remaining in other mainstem areas was less certain, and may represent local spawning activity or fish that died while in-transit to upriver areas. Although Chinook salmon spawned throughout the basin, the run was dominated by two regional components (Tanana and Upper Yukon), which annually comprised over 70% of the return. Substantially fewer fish returned to other areas ranging from 2-9% of the return, although the collective contribution of these stocks was appreciable. Most regional returns consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that these abundance differences were not related to regional or stock-specific differences. Run timing was relatively compressed compared to rivers in the southern portion of the range, with most stocks passing through the lower river over a 6-week period, ranging from 16 to 38 d. Run timing was generally earlier for stocks traveling farther upriver, although exceptions were noted. Lower basin stocks were primarily later run fish. Pronounced differences were observed in the migration rates (km/d) exhibited by regional stocks. Substantially slower swimming speeds were observed for fish returning to terminal tributaries in the lower basin ranging from 28-40 km/d compared to 52-62 km/d for upper basin stocks. The migratory patterns (migration rates in sequential reaches) of the fish also showed distinct regional differences. Average migration rates through the lower river were remarkably similar for the different stocks, ranging from 57-62 km/d, with most stocks exhibiting a general decline as the fish moved farther upriver. Tanana River stocks displayed a pronounced reduction in swimming speed after leaving the Yukon River main stem, with migration rates declining to 24 km/d on average as the fish approached their terminal tributaries. Conversely, upper basin stocks exhibited a relatively gradual (but variable) overall decline in migration rate even though these fish were traveling substantially greater distances upriver. Average migration rates for upper basin stocks ranged from 43-61 km/d as the fish approached their terminal tributaries. There was substantial variation in the migratory patterns exhibited by individual fish, although these patterns tended to be similar to the patterns exhibited by the regional stocks, particularly as the fish moved farther upriver from the tagging area. The dominant source of variation among fish reflected the average migration rate, with individual fish traveling slower in the lower basin exhibiting consistently slower migration rates as they moved upriver compared to their faster moving counterparts. This migratory pattern was consistent across stocks, and on average explained 74% of the within-stock variation in migration rate represented by the multivariate data. The second source of variation in migration rate reflected a shift in the relative swimming speeds of the individual fish as they progressed upriver. Although movement rates declined for nearly all of the fish during the migration, differences were observed in the pattern of the decline. Fish with faster migration rates in the lower river exhibited a pronounced decline in swimming speed as they moved upriver, whereas fish moving slower in the lower river displayed a more gradual decline in migration rate. On average, this migratory pattern explained 22% of the within-stock variation in migration rate represented by the multivariate data. Most fish (98%) exhibited continuous upriver movements and strong fidelity to the rivers they entered. However a small number of fish (n = 66) deviated from this pattern. Some of these individuals initially passed their final destination and continued upriver for varying distances before reversing direction, swimming back downstream, and entering their terminal tributary. Although most of these excursions were relatively short (< 30 km), there were several instances where fish traveled hundreds of kilometers out of their way. Thirty-four fish tracked to terminal tributaries subsequently left these rivers, and traveled to other terminal tributaries within the basin (n = 31) or were harvested in upriver fisheries (n = 3). Although most of these incidents involved nearby tributaries, major diversions were also observed, with several fish traveling over 300 km to natal rivers after leaving the initial tributary. Chinook salmon returns to the Yukon River typically consisted of a series of distinct and sizable increases in the number fish entering the river over the course of the run, commonly referred to as pulses. A large number of fish (n = 251) were radio tagged over a 4-day period during a pulse in 2003 to provide information on the progression of the pulse as it moved upriver. The time taken by the pulse to move past subsequent upriver locations increased as the fish moved farther upriver from the tagging area, with the fish passing sites located 580 and 800 km upriver over a span of 14 and 21 d, respectively. Although not surprising considering the extensive variation in migration rates observed among individual fish, this finding does suggest that these pulses do not represent cohesive aggregates of fish moving upriver. Unlike the well established methods used to estimate other life history characteristics, the development of quantitative methods for analyzing and modeling fish movements has lagged noticeably behind, due in part to the complexity associated with movement data and (prior to the advent of telemetry) the difficulty of collecting this type of information on free-ranging individuals. Two fundamentally different analytical approaches, hierarchical linear regression models and multivariate ordination, were used during this study to evaluate factors thought to influence the upriver movements of the fish. In spite of the inherent differences, both methods provided strikingly similar results, indicating that the study findings were not dependent on the approach used, and suggesting that the results were plausible based on the information available and the weight of evidence. Both analytical methods had advantages, and provided complementary information. With hierarchical linear models, it was possible to simultaneously evaluate a wide range of explanatory variables (in our case, both biological and environmental), which provided standardized comparisons and simplified the interpretation of the results. Since both fixed and random effects were incorporated in the models, it was possible to account for sources of variation when insufficient information was available to identify the underlining factors – an important consideration since few field studies provide comprehensive data. With multivariate ordination, separate analyzes were needed to examine the relationships between the migration rates and the biotic and physical variables. In addition to being cumbersome, this limitation made it more difficult to compare the relative influence of the different factors and interactions between factors. However, ordination was very useful as an exploratory tool. Although compartmentalized by stock, across fish comparisons were simple and relatively straightforward. Because the explanatory variables were evaluated separately in relation to the ordination score assigned to the fish, it was possible to examine and compare highly correlated variables. Ordination was also able to identify overall patterns within the data and assess the relative importance. While this can be accomplished within the framework of linear regression using mixture models to determine whether multiple distributions exist within the data, the process is much simpler with ordination. The migratory patterns of the fish were influenced by a wide range of factors, with evidentiary support for complex, multi-faceted relationships. Physical features of the basin demonstrated stronger explanatory power, accounting for over 70% of the observed variation in migration rate compared to 18% for the biological characteristics of the fish. Parameter estimates associated with the steepness of the migratory route and remaining distance the fish had to travel to reach their natal rivers were most strongly correlated with migration rate, with consistent relationships observed across stocks. Migration rates were also noticeably slower in extensively braided reaches of the basin. The weaker relationships between migration rate and biotic factors may reflect stabilizing selection on long-distance migrants. Smaller fish exhibited minimally faster swimming speeds on average than larger individuals. This relationship was stronger in highly braided reaches. Run timing was positively related to migration rate for most stocks. Surprisingly, upper basin stocks traveling farther upriver displayed progressively negative relationships, suggesting that late-run fish were moving slower. Ancillary information suggests that this decline may relate to deteriorating fish condition later in the season. Title: Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin Author: Eiler, John H. Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has raised concerns over the future status of the returns, and severely impacted commercial and subsistence fisheries within the drainage. Management is further complicated by the mixed-stock composition of the run, the presence of other temporally similar salmon species, and the need to equitably allocate harvests between the numerous fisheries and user groups scattered throughout the basin. Detailed information is needed on Chinook salmon run characteristics to better understand and manage the returns, and facilitate conservation efforts. However, this goal is exacerbated by the massive size and remote nature of the basin, the large number of highly mobile fish, and the compressed timing of the run. To address these challenges, radio telemetry was used to determine the stock composition and spawning distribution of the returns, and the migratory characteristics of the fish. The migratory patterns exhibited by returning salmon provide a number of insights into the status of the run. Since the Yukon River is essentially free-flowing (i.e., not regulated), this study also presented an opportunity to document the distribution and upriver movements of large returns of wild Chinook salmon under natural conditions. During 2002-2004, returning adult Chinook salmon were captured in the lower Yukon River (approximately 300 km upriver from the river mouth), tagged with radio transmitters, and tracked upriver using remote tracking stations located on important migratory routes and major spawning tributaries. Aerial tracking surveys were used to locate fish in spawning areas and between stations. The fish responded well to the capture and handling procedures, with most (2,790, 98%) resuming upriver movements. Although the fish initially displayed a negative tagging response, with slower migration rates observed immediately after release, the duration of this response was relatively short (several days) and less severe as the fish moved upriver. Independent measures indicated that the swimming speeds and timing of the fish upriver from the tagging area were comparable to untagged fish, suggesting that the tagging methods used were relatively benign. Fish returned to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging area. Distribution patterns were similar across years, suggesting that the principal components of the run were identified. Most spawning fish were clustered in a number of key tributaries, with smaller numbers of fish located in other spatially isolated areas. The fish typically returned to clear water tributaries that were relatively entrenched, had moderate gradients, and were associated with upland areas. Fish were largely absent in lowland reaches characterized by meandering, low gradient, highly alluvial channels often associated with main river floodplains. There was suggestive evidence of mainstem spawning in reaches of the Upper Yukon. The status of fish remaining in other mainstem areas was less certain, and may represent local spawning activity or fish that died while in-transit to upriver areas. Although Chinook salmon spawned throughout the basin, the run was dominated by two regional components (Tanana and Upper Yukon), which annually comprised over 70% of the return. Substantially fewer fish returned to other areas ranging from 2-9% of the return, although the collective contribution of these stocks was appreciable. Most regional returns consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that these abundance differences were not related to regional or stock-specific differences. Run timing was relatively compressed compared to rivers in the southern portion of the range, with most stocks passing through the lower river over a 6-week period, ranging from 16 to 38 d. Run timing was generally earlier for stocks traveling farther upriver, although exceptions were noted. Lower basin stocks were primarily later run fish. Pronounced differences were observed in the migration rates (km/d) exhibited by regional stocks. Substantially slower swimming speeds were observed for fish returning to terminal tributaries in the lower basin ranging from 28-40 km/d compared to 52-62 km/d for upper basin stocks. The migratory patterns (migration rates in sequential reaches) of the fish also showed distinct regional differences. Average migration rates through the lower river were remarkably similar for the different stocks, ranging from 57-62 km/d, with most stocks exhibiting a general decline as the fish moved farther upriver. Tanana River stocks displayed a pronounced reduction in swimming speed after leaving the Yukon River main stem, with migration rates declining to 24 km/d on average as the fish approached their terminal tributaries. Conversely, upper basin stocks exhibited a relatively gradual (but variable) overall decline in migration rate even though these fish were traveling substantially greater distances upriver. Average migration rates for upper basin stocks ranged from 43-61 km/d as the fish approached their terminal tributaries. There was substantial variation in the migratory patterns exhibited by individual fish, although these patterns tended to be similar to the patterns exhibited by the regional stocks, particularly as the fish moved farther upriver from the tagging area. The dominant source of variation among fish reflected the average migration rate, with individual fish traveling slower in the lower basin exhibiting consistently slower migration rates as they moved upriver compared to their faster moving counterparts. This migratory pattern was consistent across stocks, and on average explained 74% of the within-stock variation in migration rate represented by the multivariate data. The second source of variation in migration rate reflected a shift in the relative swimming speeds of the individual fish as they progressed upriver. Although movement rates declined for nearly all of the fish during the migration, differences were observed in the pattern of the decline. Fish with faster migration rates in the lower river exhibited a pronounced decline in swimming speed as they moved upriver, whereas fish moving slower in the lower river displayed a more gradual decline in migration rate. On average, this migratory pattern explained 22% of the within-stock variation in migration rate represented by the multivariate data. Most fish (98%) exhibited continuous upriver movements and strong fidelity to the rivers they entered. However a small number of fish (n = 66) deviated from this pattern. Some of these individuals initially passed their final destination and continued upriver for varying distances before reversing direction, swimming back downstream, and entering their terminal tributary. Although most of these excursions were relatively short (< 30 km), there were several instances where fish traveled hundreds of kilometers out of their way. Thirty-four fish tracked to terminal tributaries subsequently left these rivers, and traveled to other terminal tributaries within the basin (n = 31) or were harvested in upriver fisheries (n = 3). Although most of these incidents involved nearby tributaries, major diversions were also observed, with several fish traveling over 300 km to natal rivers after leaving the initial tributary. Chinook salmon returns to the Yukon River typically consisted of a series of distinct and sizable increases in the number fish entering the river over the course of the run, commonly referred to as pulses. A large number of fish (n = 251) were radio tagged over a 4-day period during a pulse in 2003 to provide information on the progression of the pulse as it moved upriver. The time taken by the pulse to move past subsequent upriver locations increased as the fish moved farther upriver from the tagging area, with the fish passing sites located 580 and 800 km upriver over a span of 14 and 21 d, respectively. Although not surprising considering the extensive variation in migration rates observed among individual fish, this finding does suggest that these pulses do not represent cohesive aggregates of fish moving upriver. Unlike the well established methods used to estimate other life history characteristics, the development of quantitative methods for analyzing and modeling fish movements has lagged noticeably behind, due in part to the complexity associated with movement data and (prior to the advent of telemetry) the difficulty of collecting this type of information on free-ranging individuals. Two fundamentally different analytical approaches, hierarchical linear regression models and multivariate ordination, were used during this study to evaluate factors thought to influence the upriver movements of the fish. In spite of the inherent differences, both methods provided strikingly similar results, indicating that the study findings were not dependent on the approach used, and suggesting that the results were plausible based on the information available and the weight of evidence. Both analytical methods had advantages, and provided complementary information. With hierarchical linear models, it was possible to simultaneously evaluate a wide range of explanatory variables (in our case, both biological and environmental), which provided standardized comparisons and simplified the interpretation of the results. Since both fixed and random effects were incorporated in the models, it was possible to account for sources of variation when insufficient information was available to identify the underlining factors – an important consideration since few field studies provide comprehensive data. With multivariate ordination, separate analyzes were needed to examine the relationships between the migration rates and the biotic and physical variables. In addition to being cumbersome, this limitation made it more difficult to compare the relative influence of the different factors and interactions between factors. However, ordination was very useful as an exploratory tool. Although compartmentalized by stock, across fish comparisons were simple and relatively straightforward. Because the explanatory variables were evaluated separately in relation to the ordination score assigned to the fish, it was possible to examine and compare highly correlated variables. Ordination was also able to identify overall patterns within the data and assess the relative importance. While this can be accomplished within the framework of linear regression using mixture models to determine whether multiple distributions exist within the data, the process is much simpler with ordination. The migratory patterns of the fish were influenced by a wide range of factors, with evidentiary support for complex, multi-faceted relationships. Physical features of the basin demonstrated stronger explanatory power, accounting for over 70% of the observed variation in migration rate compared to 18% for the biological characteristics of the fish. Parameter estimates associated with the steepness of the migratory route and remaining distance the fish had to travel to reach their natal rivers were most strongly correlated with migration rate, with consistent relationships observed across stocks. Migration rates were also noticeably slower in extensively braided reaches of the basin. The weaker relationships between migration rate and biotic factors may reflect stabilizing selection on long-distance migrants. Smaller fish exhibited minimally faster swimming speeds on average than larger individuals. This relationship was stronger in highly braided reaches. Run timing was positively related to migration rate for most stocks. Surprisingly, upper basin stocks traveling farther upriver displayed progressively negative relationships, suggesting that late-run fish were moving slower. Ancillary information suggests that this decline may relate to deteriorating fish condition later in the season. Close

• 67. [Article] Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries ...

  Citation × Citation Citation Abstract Copy Title: Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon Author: Mohr, Michael S., Banks, Michael A., Borgerson, Lisa A., Lawson, Peter W., Anderson, Eric C., Garza, John Carlos, Crandall, Eric D., Satterthwaite, William H., O'Farrell, Michael R., Bellinger, M. Renee, Palmer-Zwahlen, Melodie L., Bates, Sarah J., Kormos, Brett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/utaf20/current#.UzNNkfPn-Hs. Title: Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon Author: Mohr, Michael S., Banks, Michael A., Borgerson, Lisa A., Lawson, Peter W., Anderson, Eric C., Garza, John Carlos, Crandall, Eric D., Satterthwaite, William H., O'Farrell, Michael R., Bellinger, M. Renee, Palmer-Zwahlen, Melodie L., Bates, Sarah J., Kormos, Brett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/utaf20/current#.UzNNkfPn-Hs. Close

• 68. [Image] The trout and salmon of the Pacific coast

  	This article is an overview of the variety of trout and salmon that are found in Oregon and Washington states.
  	Citation × Citation Citation Abstract Copy Title: The trout and salmon of the Pacific coast Author: Jordan, David Starr Year: 1906, 2005, 2004 This article is an overview of the variety of trout and salmon that are found in Oregon and Washington states. Title: The trout and salmon of the Pacific coast Author: Jordan, David Starr Year: 1906, 2005, 2004 This article is an overview of the variety of trout and salmon that are found in Oregon and Washington states. Close

• 69. [Image] Klamath River fish die-off, September 2002 : causative factors of mortality

  	Executive Summary This report provides information describing the biological, hydrological, meteorological, and water quality conditions associated with the die-off of an estimated 34,056 fish in the Klamath ...
  	Citation × Citation Citation Abstract Copy Title: Klamath River fish die-off, September 2002 : causative factors of mortality Author: Guillen, George Year: 2003, 2005, 2004 Executive Summary This report provides information describing the biological, hydrological, meteorological, and water quality conditions associated with the die-off of an estimated 34,056 fish in the Klamath River, California in September 2002. The proximate cause of death was heavy infections of two fish pathogens, Ich and columnaris. However, given that these ubiquitous pathogens are normally found in the Klamath River, additional factors must have played a role for them to have become lethal. It is our conclusion based on multiple lines of evidence that the fish die-off in the lower Klamath River in 2002 was a result of a combination of factors that began with an early peak in the return of a large run of fall Chinook salmon. Low river discharges apparently did not provide suitable attraction flows for migrating adult salmon, resulting in large numbers of fish congregating in the warm waters of the lower River. The high density offish, low discharges, warm water temperatures, and possible extended residence time of salmon created optimal conditions for parasite proliferation and precipitated an epizootic of Ich and columnaris. Based on a review of available literature and historical records, this was the largest known pre-spawning adult salmonid die-off recorded for the Klamath River and possibly the Pacific coast. Title: Klamath River fish die-off, September 2002 : causative factors of mortality Author: Guillen, George Year: 2003, 2005, 2004 Executive Summary This report provides information describing the biological, hydrological, meteorological, and water quality conditions associated with the die-off of an estimated 34,056 fish in the Klamath River, California in September 2002. The proximate cause of death was heavy infections of two fish pathogens, Ich and columnaris. However, given that these ubiquitous pathogens are normally found in the Klamath River, additional factors must have played a role for them to have become lethal. It is our conclusion based on multiple lines of evidence that the fish die-off in the lower Klamath River in 2002 was a result of a combination of factors that began with an early peak in the return of a large run of fall Chinook salmon. Low river discharges apparently did not provide suitable attraction flows for migrating adult salmon, resulting in large numbers of fish congregating in the warm waters of the lower River. The high density offish, low discharges, warm water temperatures, and possible extended residence time of salmon created optimal conditions for parasite proliferation and precipitated an epizootic of Ich and columnaris. Based on a review of available literature and historical records, this was the largest known pre-spawning adult salmonid die-off recorded for the Klamath River and possibly the Pacific coast. Close

• 70. [Image] The Water Report - The ESA, salmon, and Western water law

  	Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/.
  	Citation × Citation Citation Abstract Copy Title: The Water Report - The ESA, salmon, and Western water law Author: Envirotech Publications Year: 2004, 2008, 2006 Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/. Title: The Water Report - The ESA, salmon, and Western water law Author: Envirotech Publications Year: 2004, 2008, 2006 Only portions of issues of The Water Report are available in the Klamath Waters Digital Library. See the full report at http://www.thewaterreport.com/. Close