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• 321. [Image] Draft upper Klamath River management plan environmental impact statement and resource management plan amendments. Volume 2 - Appendices

  	"BLM/OR/WA/PL-02/038+1792"--P. [2] of cover; Cover title; Includes bibliographical references (v. 2, p. 219-228) and index
  	Citation × Citation Citation Abstract Copy Title: Draft upper Klamath River management plan environmental impact statement and resource management plan amendments. Volume 2 - Appendices Author: United States. Bureau of Land Management. Klamath Falls Resource Area Office Year: 2003, 2004 "BLM/OR/WA/PL-02/038+1792"--P. [2] of cover; Cover title; Includes bibliographical references (v. 2, p. 219-228) and index Title: Draft upper Klamath River management plan environmental impact statement and resource management plan amendments. Volume 2 - Appendices Author: United States. Bureau of Land Management. Klamath Falls Resource Area Office Year: 2003, 2004 "BLM/OR/WA/PL-02/038+1792"--P. [2] of cover; Cover title; Includes bibliographical references (v. 2, p. 219-228) and index Close

• 322. [Image] Distribution and biology of suckers in Lower Klamath reservoirs : 1999 final report

  	Abstract The objectives of this two-year study (1998-1999) were to document distribution, abundance, age class structure, recruitment success, and habitat use by all life history stages of shortnose and ...
  	Citation × Citation Citation Abstract Copy Title: Distribution and biology of suckers in Lower Klamath reservoirs : 1999 final report Author: Desjardins, Marc; Markle, Douglas F. Year: 2000, 2005 Abstract The objectives of this two-year study (1998-1999) were to document distribution, abundance, age class structure, recruitment success, and habitat use by all life history stages of shortnose and Lost River suckers in three lower Klamath River hydroelectric reservoirs (J. C. Boyle, Copco, and Iron Gate). Lost River sucker catches were sporadic (only 3 adult individuals total) and the focus of our analyses, therefore, shifted to shortnose suckers. Adult and larval suckers were found in all reservoirs both years. All life history stages (larvae, juveniles and adults) were found in J. C. Boyle during both years and in Copco in 1999. Juvenile suckers were not found in Copco in 1998. The number of adult shortnose suckers was highest in Copco reservoir (n=165), followed by J.C. Boyle (n=50) and Iron Gate (n=22). Larger and older individuals dominated Copco and Iron Gate reservoirs and little size structure was detected. J. C. Boyle tended to have smaller adult shortnose suckers and many size classes were present. Unidentifiable larval suckers were most abundant in Copco reservoir where historic spawning of shortnose suckers has been documented. Larval suckers in Copco and Iron Gate reservoirs were most abundant in mid to late June before quickly disappearing from catches. J. C. Boyle larval suckers peaked in mid July, attained larger sizes, and were caught later in the season. It appeared that recruitment of young-of-the-year suckers only occurred in J. C. Boyle with downstream reservoirs recruiting older individuals, perhaps those that had earlier recruited to J. C. Boyle. Tagging studies could clarify adult recruitment dynamics and an additional study of juvenile recruitment would be needed to confirm these patterns. Predation pressure may be somewhat reduced in J. C. Boyle in comparison to the other reservoirs as its fish community was dominated by native fishes while communities in Copco and Iron Gate reservoirs were dominated by exotic predators. J. C. Boyle also possessed proportionally more littoral habitat, which suggests it may provide a more stable environment for young fishes. However, our sampling was inadequate to demonstrate such relationships due to high variance in larval and juvenile catches and potentially confounding habitat variables. One such variable was water level fluctuations, which could interact with habitat and resource availability in complex ways. For example, water level fluctuations, presumed to have a negative impact, were greatest in J. C. Boyle. Extrapolation from the literature suggests it should have had the poorest habitat for larval and juvenile suckers, but our results indicated J. C. Boyle had the most young suckers. Additional study of the relationships between water level fluctuations, habitat availability, the exotic fish community, and juvenile sucker recruitment would be needed to better understand early life history ecology of endangered lake suckers in these systems. Title: Distribution and biology of suckers in Lower Klamath reservoirs : 1999 final report Author: Desjardins, Marc; Markle, Douglas F. Year: 2000, 2005 Abstract The objectives of this two-year study (1998-1999) were to document distribution, abundance, age class structure, recruitment success, and habitat use by all life history stages of shortnose and Lost River suckers in three lower Klamath River hydroelectric reservoirs (J. C. Boyle, Copco, and Iron Gate). Lost River sucker catches were sporadic (only 3 adult individuals total) and the focus of our analyses, therefore, shifted to shortnose suckers. Adult and larval suckers were found in all reservoirs both years. All life history stages (larvae, juveniles and adults) were found in J. C. Boyle during both years and in Copco in 1999. Juvenile suckers were not found in Copco in 1998. The number of adult shortnose suckers was highest in Copco reservoir (n=165), followed by J.C. Boyle (n=50) and Iron Gate (n=22). Larger and older individuals dominated Copco and Iron Gate reservoirs and little size structure was detected. J. C. Boyle tended to have smaller adult shortnose suckers and many size classes were present. Unidentifiable larval suckers were most abundant in Copco reservoir where historic spawning of shortnose suckers has been documented. Larval suckers in Copco and Iron Gate reservoirs were most abundant in mid to late June before quickly disappearing from catches. J. C. Boyle larval suckers peaked in mid July, attained larger sizes, and were caught later in the season. It appeared that recruitment of young-of-the-year suckers only occurred in J. C. Boyle with downstream reservoirs recruiting older individuals, perhaps those that had earlier recruited to J. C. Boyle. Tagging studies could clarify adult recruitment dynamics and an additional study of juvenile recruitment would be needed to confirm these patterns. Predation pressure may be somewhat reduced in J. C. Boyle in comparison to the other reservoirs as its fish community was dominated by native fishes while communities in Copco and Iron Gate reservoirs were dominated by exotic predators. J. C. Boyle also possessed proportionally more littoral habitat, which suggests it may provide a more stable environment for young fishes. However, our sampling was inadequate to demonstrate such relationships due to high variance in larval and juvenile catches and potentially confounding habitat variables. One such variable was water level fluctuations, which could interact with habitat and resource availability in complex ways. For example, water level fluctuations, presumed to have a negative impact, were greatest in J. C. Boyle. Extrapolation from the literature suggests it should have had the poorest habitat for larval and juvenile suckers, but our results indicated J. C. Boyle had the most young suckers. Additional study of the relationships between water level fluctuations, habitat availability, the exotic fish community, and juvenile sucker recruitment would be needed to better understand early life history ecology of endangered lake suckers in these systems. Close

• 323. [Image] Klamath River water quality and acoustic Doppler current profiler data from Link River Dam to Keno Dam, 2007

  	Klamath River Water Quality and Acoustic Doppler Current Profiler Data from Link River Dam to Keno Dam, 2007 By Annett B. Sullivan, Michael L. Deas, Jessica Asbill, Julie D. Kirshtein, Kenna Butler, Roy ...
  	Citation × Citation Citation Abstract Copy Title: Klamath River water quality and acoustic Doppler current profiler data from Link River Dam to Keno Dam, 2007 Author: Sullivan, Annett B. (Annett Brigitte), 1970- Year: 2008 Klamath River Water Quality and Acoustic Doppler Current Profiler Data from Link River Dam to Keno Dam, 2007 By Annett B. Sullivan, Michael L. Deas, Jessica Asbill, Julie D. Kirshtein, Kenna Butler, Roy E. Wellman, Marc A. Stewart, and Jennifer Vaughn Abstract In 2007, the U.S. Geological Survey, Watercourse Engineering, and Bureau of Reclamation began a project to construct and calibrate a water quality and hydrodynamic model of the 21-mile reach of the Klamath River from Link River Dam to Keno Dam. To provide a basis for this work, data collection and experimental work were planned for 2007 and 2008. This report documents sampling and analytical methods and presents data from the first year of work. To determine water velocities and discharge, a series of cross-sectional acoustic Doppler current profiler (ADCP) measurements were made on the mainstem and four canals on May 30 and September 19, 2007. Water quality was sampled weekly at five mainstem sites and five tributaries from early April through early November, 2007. Constituents reported here include field parameters (water temperature, pH, dissolved oxygen concentration, specific conductance); total nitrogen and phosphorus; particulate carbon and nitrogen; filtered orthophosphate, nitrite, nitrite plus nitrate, ammonia, organic carbon, iron, silica, and alkalinity; specific UV absorbance at 254 nm; phytoplankton and zooplankton enumeration and species identification; and bacterial abundance and morphological subgroups. The ADCP measurements conducted in good weather conditions in May showed that four major canals accounted for most changes in discharge along the mainstem on that day. Direction of velocity at measured locations was fairly homogeneous across the channel, while velocities were generally lowest near the bottom, and highest near surface, ranging from 0.0 to 0.8 ft/s. Measurements in September, made in windy conditions, raised questions about the effect of wind on flow. Most nutrient and carbon concentrations were lowest in spring, increased and remained elevated in summer, and decreased in fall. Dissolved nitrite plus nitrate and nitrite had a different seasonal cycle and were below detection or at low concentration in summer. Many nutrient and carbon concentrations were similar at the top and bottom of the water column, though ammonia and particulate carbon showed more variability in summer. Averaged over the season, particulate carbon and particulate nitrogen decreased in the downstream direction, while ammonia and orthophosphate concentrations increased in the downstream direction. At most sites, bacteria, phytoplankton, and zooplankton populations reached their maximums in summer. Large bacterial cells made up most of the bacteria biovolume, though cocci were the most numerous bacteria type. The cocci were smaller than the filter pore sizes used to separate dissolved from particulate matter in this study. Phytoplankton biovolumes were dominated by the blue-green alga Aphanizomenonflos aquae most of the sampling season, though a spring diatom bloom occurred. Phytoplankton biovolumes were generally highest at the upstream Link River and Railroad Bridge sites and decreased in the downstream direction. Zooplankton populations were dominated by copepods in early spring, and by cladocerans and rotifers in summer, with rotifers more common farther downstream. l Title: Klamath River water quality and acoustic Doppler current profiler data from Link River Dam to Keno Dam, 2007 Author: Sullivan, Annett B. (Annett Brigitte), 1970- Year: 2008 Klamath River Water Quality and Acoustic Doppler Current Profiler Data from Link River Dam to Keno Dam, 2007 By Annett B. Sullivan, Michael L. Deas, Jessica Asbill, Julie D. Kirshtein, Kenna Butler, Roy E. Wellman, Marc A. Stewart, and Jennifer Vaughn Abstract In 2007, the U.S. Geological Survey, Watercourse Engineering, and Bureau of Reclamation began a project to construct and calibrate a water quality and hydrodynamic model of the 21-mile reach of the Klamath River from Link River Dam to Keno Dam. To provide a basis for this work, data collection and experimental work were planned for 2007 and 2008. This report documents sampling and analytical methods and presents data from the first year of work. To determine water velocities and discharge, a series of cross-sectional acoustic Doppler current profiler (ADCP) measurements were made on the mainstem and four canals on May 30 and September 19, 2007. Water quality was sampled weekly at five mainstem sites and five tributaries from early April through early November, 2007. Constituents reported here include field parameters (water temperature, pH, dissolved oxygen concentration, specific conductance); total nitrogen and phosphorus; particulate carbon and nitrogen; filtered orthophosphate, nitrite, nitrite plus nitrate, ammonia, organic carbon, iron, silica, and alkalinity; specific UV absorbance at 254 nm; phytoplankton and zooplankton enumeration and species identification; and bacterial abundance and morphological subgroups. The ADCP measurements conducted in good weather conditions in May showed that four major canals accounted for most changes in discharge along the mainstem on that day. Direction of velocity at measured locations was fairly homogeneous across the channel, while velocities were generally lowest near the bottom, and highest near surface, ranging from 0.0 to 0.8 ft/s. Measurements in September, made in windy conditions, raised questions about the effect of wind on flow. Most nutrient and carbon concentrations were lowest in spring, increased and remained elevated in summer, and decreased in fall. Dissolved nitrite plus nitrate and nitrite had a different seasonal cycle and were below detection or at low concentration in summer. Many nutrient and carbon concentrations were similar at the top and bottom of the water column, though ammonia and particulate carbon showed more variability in summer. Averaged over the season, particulate carbon and particulate nitrogen decreased in the downstream direction, while ammonia and orthophosphate concentrations increased in the downstream direction. At most sites, bacteria, phytoplankton, and zooplankton populations reached their maximums in summer. Large bacterial cells made up most of the bacteria biovolume, though cocci were the most numerous bacteria type. The cocci were smaller than the filter pore sizes used to separate dissolved from particulate matter in this study. Phytoplankton biovolumes were dominated by the blue-green alga Aphanizomenonflos aquae most of the sampling season, though a spring diatom bloom occurred. Phytoplankton biovolumes were generally highest at the upstream Link River and Railroad Bridge sites and decreased in the downstream direction. Zooplankton populations were dominated by copepods in early spring, and by cladocerans and rotifers in summer, with rotifers more common farther downstream. l Close

• 324. [Image] Official annual, Medford District, Ninth Corps Area, Civilian Conservation Corps.

  	Annual; Description based on: 1938 issue; Cover title
  	Citation × Citation Citation Abstract Copy Title: Official annual, Medford District, Ninth Corps Area, Civilian Conservation Corps. Author: Civilian Conservation Corps (U.S.). Medford District Year: 1938, 2008, 2006 Annual; Description based on: 1938 issue; Cover title Title: Official annual, Medford District, Ninth Corps Area, Civilian Conservation Corps. Author: Civilian Conservation Corps (U.S.). Medford District Year: 1938, 2008, 2006 Annual; Description based on: 1938 issue; Cover title Close

• 325. [Image] The Chemical and biological impact of Klamath Marsh on the Williamson River, Oregon

  	A comparative study of the Williamson River (before and after passage through Klamath Marsh) and the Sprague River (which is a major tributary of the Williamson River) in South Central Oregon has provided ...
  	Citation × Citation Citation Abstract Copy Title: The Chemical and biological impact of Klamath Marsh on the Williamson River, Oregon Author: Perdue, Edward M. Year: 1981, 2005 A comparative study of the Williamson River (before and after passage through Klamath Marsh) and the Sprague River (which is a major tributary of the Williamson River) in South Central Oregon has provided substantial insight into the effects of a marsh environment on the transport of iron and aquatic humus in river water. In the Sprague River and in the pre-marsh Williamson River, iron is transported primarily as 0.80 ym suspended particulate material. In Klamath Marsh, this coarse particulate material is "weathered11, yielding iron-aquatic humus "complexes'1. Thus, most iron and aquatic humus in the post-marsh Williamson River are in the 0.025 ?m size fraction. Presumably, other trace metals would be similarly affected. Klamath Marsh serves as an important source of biologically derived solutes such as amino acids and sugars. Fractionation studies have shown that amino acids are almost exclusively humic-bound in the Will-iamson River system, while sugars may be present as either polysacchar-ides (PS) or humic-bound saccharides (HS). The PS/HS ratio may reflect the relative importance of autochthonous and allochthonous sources of sugars. Major solute composition strongly indicates that ground waters flowing into the pre-marsh Williamson River and the Sprague River are derived from a different source than are ground waters which enter the post-marsh Williamson River from Big Springs, Spring Creek, and from unidentified springs below Klamath Marsh. Nutrient concentrations (H4SiO4, NO3, PO43) are significantly higher in spring waters than elsewhere in the system. While nitrate levels (3-11 ?m) were somewhat low, phosphate levels (1-3 ?m) were quite high throughout the Williamson River system. There was some evidence for nitrogen limitation of algal growth in the pre-marsh Williamson River. While Fragilaria construens was dominant throughout the Williamson River system, several Navicula spp. were restricted to the pre-marsh Williamson River and several Fragilaria spp. and Nitzschia, spp. were found only in the post-marsh Williamson River. In Upper Klamath Lake, Stephanodiscus astrea minuta, Fragilaria construens, and Aphanizomenon flos-aquae appeared in succession, with nuisance blooms of the latter organism occurring July-November. The cessation of flow of humic-rich water from Klamath Marsh during the summer months drastically decreased the flux of aquatic humus, iron, amino acids, and other marsh-derived solutes in the post-marsh Williamson River. At the time of cessation of flow from Klamath Marsh, nuisance blooms of Aphanizomenon flos-aquae appeared in Upper Klamath Lake. Furthermore, when flow from the marsh was re-established with the first major winter rains in November or December, Aphanizomenon flos-aquae abruptly ceased to grow in Upper Klamath Lake. Further studies are planned to determine whether this correlation is causal or coincidental. Title: The Chemical and biological impact of Klamath Marsh on the Williamson River, Oregon Author: Perdue, Edward M. Year: 1981, 2005 A comparative study of the Williamson River (before and after passage through Klamath Marsh) and the Sprague River (which is a major tributary of the Williamson River) in South Central Oregon has provided substantial insight into the effects of a marsh environment on the transport of iron and aquatic humus in river water. In the Sprague River and in the pre-marsh Williamson River, iron is transported primarily as 0.80 ym suspended particulate material. In Klamath Marsh, this coarse particulate material is "weathered11, yielding iron-aquatic humus "complexes'1. Thus, most iron and aquatic humus in the post-marsh Williamson River are in the 0.025 ?m size fraction. Presumably, other trace metals would be similarly affected. Klamath Marsh serves as an important source of biologically derived solutes such as amino acids and sugars. Fractionation studies have shown that amino acids are almost exclusively humic-bound in the Will-iamson River system, while sugars may be present as either polysacchar-ides (PS) or humic-bound saccharides (HS). The PS/HS ratio may reflect the relative importance of autochthonous and allochthonous sources of sugars. Major solute composition strongly indicates that ground waters flowing into the pre-marsh Williamson River and the Sprague River are derived from a different source than are ground waters which enter the post-marsh Williamson River from Big Springs, Spring Creek, and from unidentified springs below Klamath Marsh. Nutrient concentrations (H4SiO4, NO3, PO43) are significantly higher in spring waters than elsewhere in the system. While nitrate levels (3-11 ?m) were somewhat low, phosphate levels (1-3 ?m) were quite high throughout the Williamson River system. There was some evidence for nitrogen limitation of algal growth in the pre-marsh Williamson River. While Fragilaria construens was dominant throughout the Williamson River system, several Navicula spp. were restricted to the pre-marsh Williamson River and several Fragilaria spp. and Nitzschia, spp. were found only in the post-marsh Williamson River. In Upper Klamath Lake, Stephanodiscus astrea minuta, Fragilaria construens, and Aphanizomenon flos-aquae appeared in succession, with nuisance blooms of the latter organism occurring July-November. The cessation of flow of humic-rich water from Klamath Marsh during the summer months drastically decreased the flux of aquatic humus, iron, amino acids, and other marsh-derived solutes in the post-marsh Williamson River. At the time of cessation of flow from Klamath Marsh, nuisance blooms of Aphanizomenon flos-aquae appeared in Upper Klamath Lake. Furthermore, when flow from the marsh was re-established with the first major winter rains in November or December, Aphanizomenon flos-aquae abruptly ceased to grow in Upper Klamath Lake. Further studies are planned to determine whether this correlation is causal or coincidental. Close

• 326. [Image] Histopathological changes in gills of Lost River suckers (Deltistes luxatus) exposed to elevated ammonia and elevated pH

  	Lease, Hilary M., Histopathological Changes in Gills of Lost River Suckers (Deltistes luxatus) Exposed to Elevated Ammonia and Elevated pH, M.S., Department of Zoology and Physiology, December, 2000. ...
  	Citation × Citation Citation Abstract Copy Title: Histopathological changes in gills of Lost River suckers (Deltistes luxatus) exposed to elevated ammonia and elevated pH Author: Lease, Hilary Marian Year: 2000, 2008, 2005 Lease, Hilary M., Histopathological Changes in Gills of Lost River Suckers (Deltistes luxatus) Exposed to Elevated Ammonia and Elevated pH, M.S., Department of Zoology and Physiology, December, 2000. The Lost River sucker {Deltistes luxatus) is a federally listed, endangered fish species endemic to Upper Klamath Lake?a large, shallow hypereutrophic lake in southern Oregon. Sucker population declines in the lake over the past few decades are thought to be partly attributable to extreme water quality conditions, including elevated ammonia concentrations and elevated pH, that occur during summer cyanobacterial blooms. I analyzed structural changes in gills of larval Lost River suckers after they were exposed to elevated pH and elevated ammonia concentrations in chronic toxicity tests conducted in the laboratory. Histopathological changes in sucker lamellae were observed at ammonia concentrations that did not significantly decrease survival, growth, whole-body ion content, or swimming performance. Structural changes that I evaluated included O2 diffusion distance, lamellar thickness, hyperplasic and hypertrophic mucous cells, and infiltration of white blood cells into the lymphatic space. The increases in diffusion distance and lamellar thickness were statistically significant (P < 0.05). These gill changes are indicative of potentially compromised respiratory and ionoregulatory capacity. Because in this species gill structural changes appear to be a more sensitive indicator of stress in eutrophic water quality conditions than are the more traditional sublethal indices, gill histopathology might be useful for monitoring the health of Lost River suckers in Upper Klamath Lake. Title: Histopathological changes in gills of Lost River suckers (Deltistes luxatus) exposed to elevated ammonia and elevated pH Author: Lease, Hilary Marian Year: 2000, 2008, 2005 Lease, Hilary M., Histopathological Changes in Gills of Lost River Suckers (Deltistes luxatus) Exposed to Elevated Ammonia and Elevated pH, M.S., Department of Zoology and Physiology, December, 2000. The Lost River sucker {Deltistes luxatus) is a federally listed, endangered fish species endemic to Upper Klamath Lake?a large, shallow hypereutrophic lake in southern Oregon. Sucker population declines in the lake over the past few decades are thought to be partly attributable to extreme water quality conditions, including elevated ammonia concentrations and elevated pH, that occur during summer cyanobacterial blooms. I analyzed structural changes in gills of larval Lost River suckers after they were exposed to elevated pH and elevated ammonia concentrations in chronic toxicity tests conducted in the laboratory. Histopathological changes in sucker lamellae were observed at ammonia concentrations that did not significantly decrease survival, growth, whole-body ion content, or swimming performance. Structural changes that I evaluated included O2 diffusion distance, lamellar thickness, hyperplasic and hypertrophic mucous cells, and infiltration of white blood cells into the lymphatic space. The increases in diffusion distance and lamellar thickness were statistically significant (P < 0.05). These gill changes are indicative of potentially compromised respiratory and ionoregulatory capacity. Because in this species gill structural changes appear to be a more sensitive indicator of stress in eutrophic water quality conditions than are the more traditional sublethal indices, gill histopathology might be useful for monitoring the health of Lost River suckers in Upper Klamath Lake. Close

• 327. [Image] Water quality conditions in Upper Klamath and Agency Lakes, Oregon, 2005

  	Agency Lakes. Oregon. 2005 M.Wood By Gene R. Hoilman, Mary K. Lindenberg, and Tamara Abstract During June-October 2005, water quality data were collected from Upper Klamath and Agency Lakes In Oregon, ...
  	Citation × Citation Citation Abstract Copy Title: Water quality conditions in Upper Klamath and Agency Lakes, Oregon, 2005 Author: Hoilman, Gene R Year: 2008 Agency Lakes. Oregon. 2005 M.Wood By Gene R. Hoilman, Mary K. Lindenberg, and Tamara Abstract During June-October 2005, water quality data were collected from Upper Klamath and Agency Lakes In Oregon, and meteorological data were collected around and within Upper Klamath Lake. Data recorded at two continuous water quality monitors In Agency Lake showed similar temperature patterns throughout the field season, but data recorded at the northern site showed more day-to-day variability for dissolved oxygen concentration and saturation after late June and more day-to-day variability for pH and specific conductance values after mid-July. Data recorded from the northern and southern parts of Agency Lake showed more comparable day-to-day variability in dissolved oxygen concentrations and pH from September through the end of the monitoring period. For Upper Klamath Lake, seasonal (late July through early August) lows of dissolved oxygen concentrations and saturation were coincident with a seasonal low of pH values and seasonal highs of ammonia and orthophosphate concentrations, specific conductance values, and water temperatures. Patterns in these parameters, excluding water temperature, were associated with bloom dynamics of the cyanobacterium (blue-green alga) Aphanizomenonflos-aquae in Upper Klamath Lake. In Upper Klamath Lake, water temperature in excess of 28 degrees Celsius (a high stress threshold for Upper Klamath Lake suckers) was recorded only once at one site during the field season. Large areas of Upper Klamath Lake had periods of dissolved oxygen concentration of less than 4 milligrams per liter and pH value greater than 9.7, but these conditions were not persistent throughout days at most sites. Dissolved oxygen concentrations in Upper Klamath Lake on time scales of days and months appeared to be influenced, in part, by bathymetry and prevailing current flow patterns. Diel patterns of water column stratification were evident, even at the deepest sites. This diel pattern of stratification was attributable to diel wind speed patterns and the shallow nature of most of Upper Klamath Lake. Timing of the daily extreme values of dissolved oxygen concentration, pH, and water temperature was less distinct with increased water column depth. Chlorophyll a concentrations varied spatially and temporally throughout Upper Klamath Lake. Location greatly affected algal concentrations, in turn affecting nutrient and dissolved oxygen concentrations—some of the highest chlorophyll a concentrations were associated with the lowest dissolved oxygen concentrations and the highest un-ionized ammonia concentrations. The occurrence of the low dissolved oxygen and high un-ionized ammonia concentrations coincided with a decline in algae resulting from cell death, as rn.easu.red by concentrations of chlorophyll a. Dissolved oxygen production, rates in. experim.en.ts were as high as 1.47 milligrams of oxygen per liter per hour, and consumption rates were as much as -0.73 milligrams of oxygen per liter per hour. Dissolved oxygen, consumption rates measured in. this study were comparable to those measured in a 2002 Upper Klamath Lake study, and a higher rate of dissolved oxygen consumption was recorded in. dark bottles positioned higher in the water column. Data, though, inconclusive, indicated that a decreasing trend of dissolved oxygen productivity through July could have contributed to the decreasing dissolved oxygen concentrations and percent saturation recorded in Upper Klamath Lake during this time. Phytoplankton self-shading was evident from, a general inverse relation between depth of photic zone and chlorophyll a concentrations. This shading caused net dissolved oxygen consumption during daylight hours in lower parts of the water column that would otherwise have been in the photic zone. Meteorological data collected in and around Upper Klamath Lake showed that winds were likely to come from a broad range of westerly directions in the northern one-third of the lake, but tended to come from a narrow range of northwesterly directions over the main body of the lake farther south. Title: Water quality conditions in Upper Klamath and Agency Lakes, Oregon, 2005 Author: Hoilman, Gene R Year: 2008 Agency Lakes. Oregon. 2005 M.Wood By Gene R. Hoilman, Mary K. Lindenberg, and Tamara Abstract During June-October 2005, water quality data were collected from Upper Klamath and Agency Lakes In Oregon, and meteorological data were collected around and within Upper Klamath Lake. Data recorded at two continuous water quality monitors In Agency Lake showed similar temperature patterns throughout the field season, but data recorded at the northern site showed more day-to-day variability for dissolved oxygen concentration and saturation after late June and more day-to-day variability for pH and specific conductance values after mid-July. Data recorded from the northern and southern parts of Agency Lake showed more comparable day-to-day variability in dissolved oxygen concentrations and pH from September through the end of the monitoring period. For Upper Klamath Lake, seasonal (late July through early August) lows of dissolved oxygen concentrations and saturation were coincident with a seasonal low of pH values and seasonal highs of ammonia and orthophosphate concentrations, specific conductance values, and water temperatures. Patterns in these parameters, excluding water temperature, were associated with bloom dynamics of the cyanobacterium (blue-green alga) Aphanizomenonflos-aquae in Upper Klamath Lake. In Upper Klamath Lake, water temperature in excess of 28 degrees Celsius (a high stress threshold for Upper Klamath Lake suckers) was recorded only once at one site during the field season. Large areas of Upper Klamath Lake had periods of dissolved oxygen concentration of less than 4 milligrams per liter and pH value greater than 9.7, but these conditions were not persistent throughout days at most sites. Dissolved oxygen concentrations in Upper Klamath Lake on time scales of days and months appeared to be influenced, in part, by bathymetry and prevailing current flow patterns. Diel patterns of water column stratification were evident, even at the deepest sites. This diel pattern of stratification was attributable to diel wind speed patterns and the shallow nature of most of Upper Klamath Lake. Timing of the daily extreme values of dissolved oxygen concentration, pH, and water temperature was less distinct with increased water column depth. Chlorophyll a concentrations varied spatially and temporally throughout Upper Klamath Lake. Location greatly affected algal concentrations, in turn affecting nutrient and dissolved oxygen concentrations—some of the highest chlorophyll a concentrations were associated with the lowest dissolved oxygen concentrations and the highest un-ionized ammonia concentrations. The occurrence of the low dissolved oxygen and high un-ionized ammonia concentrations coincided with a decline in algae resulting from cell death, as rn.easu.red by concentrations of chlorophyll a. Dissolved oxygen production, rates in. experim.en.ts were as high as 1.47 milligrams of oxygen per liter per hour, and consumption rates were as much as -0.73 milligrams of oxygen per liter per hour. Dissolved oxygen, consumption rates measured in. this study were comparable to those measured in a 2002 Upper Klamath Lake study, and a higher rate of dissolved oxygen consumption was recorded in. dark bottles positioned higher in the water column. Data, though, inconclusive, indicated that a decreasing trend of dissolved oxygen productivity through July could have contributed to the decreasing dissolved oxygen concentrations and percent saturation recorded in Upper Klamath Lake during this time. Phytoplankton self-shading was evident from, a general inverse relation between depth of photic zone and chlorophyll a concentrations. This shading caused net dissolved oxygen consumption during daylight hours in lower parts of the water column that would otherwise have been in the photic zone. Meteorological data collected in and around Upper Klamath Lake showed that winds were likely to come from a broad range of westerly directions in the northern one-third of the lake, but tended to come from a narrow range of northwesterly directions over the main body of the lake farther south. Close

• 328. [Image] Macroecology, paleoecology, and ecological integrity of terrestrial species and communities of the interior Columbia River basin and northern portions of the Klamath and Great Basins

  	This report presents information on biogeography and broad-scale ecology (macroecology) of selected fungi, lichens, bryophytes, vascular plants, invertebrates, and vertebrates of the interior Columbia ...
  	Citation × Citation Citation Abstract Copy Title: Macroecology, paleoecology, and ecological integrity of terrestrial species and communities of the interior Columbia River basin and northern portions of the Klamath and Great Basins Author: U.S. Department of Agriculture. Forest Service. Pacific Northwest Research Station; U.S.Department of the Interior. Bureau of Land Management. Year: 1998, 2006, 2005 This report presents information on biogeography and broad-scale ecology (macroecology) of selected fungi, lichens, bryophytes, vascular plants, invertebrates, and vertebrates of the interior Columbia River basin and adjacent areas. Rare plants include many endemics associated with local conditions. Potential plant and invertebrate bioindicators are identified. Species ecological functions differ among communities and variously affect ecosystem diversity and productivity. Species of alpine and subalpine communities are identified that may be at risk from climate change. Maps of terrestrial ecological integrity are presented. Keywords: Macroecology, paleoecology, ecological integrity, terrestrial communities, ecosystems, wildlife, fungi, lichens, bryophytes, vascular plants, invertebrates, arthropods, mollusks, amphibians, reptiles, birds, mammals, endemism, interior Columbia River basin, Klamath Basin, Great Basin. Title: Macroecology, paleoecology, and ecological integrity of terrestrial species and communities of the interior Columbia River basin and northern portions of the Klamath and Great Basins Author: U.S. Department of Agriculture. Forest Service. Pacific Northwest Research Station; U.S.Department of the Interior. Bureau of Land Management. Year: 1998, 2006, 2005 This report presents information on biogeography and broad-scale ecology (macroecology) of selected fungi, lichens, bryophytes, vascular plants, invertebrates, and vertebrates of the interior Columbia River basin and adjacent areas. Rare plants include many endemics associated with local conditions. Potential plant and invertebrate bioindicators are identified. Species ecological functions differ among communities and variously affect ecosystem diversity and productivity. Species of alpine and subalpine communities are identified that may be at risk from climate change. Maps of terrestrial ecological integrity are presented. Keywords: Macroecology, paleoecology, ecological integrity, terrestrial communities, ecosystems, wildlife, fungi, lichens, bryophytes, vascular plants, invertebrates, arthropods, mollusks, amphibians, reptiles, birds, mammals, endemism, interior Columbia River basin, Klamath Basin, Great Basin. Close

• 329. [Image] Farming practices and water quality in the Upper Klamath Basin : final report to the California State Water Resources Control Board : 205j program

  	Summary The Upper Klamath Basin (UKB) is a high desert region straddling the California-Oregon border east of the Cascade Range. Irrigation and other agricultural practices in the U. S. Bureau of Reclamation's ...
  	Citation × Citation Citation Abstract Copy Title: Farming practices and water quality in the Upper Klamath Basin : final report to the California State Water Resources Control Board : 205j program Author: Danosky, Earl; Kaffka, Stephen Year: 2002, 2007, 2006 Summary The Upper Klamath Basin (UKB) is a high desert region straddling the California-Oregon border east of the Cascade Range. Irrigation and other agricultural practices in the U. S. Bureau of Reclamation's Klamath Project may result in impaired surface water quality, reducing its use for wildlife and fish in important national wildlife refuges that receive drainage water from farms, and in the Klamath River. By 2004, a system of total maximum daily loads (TMDL) for nutrients must be established for the Klamath River. To investigate the relationships among agricultural practices and surface water quality in the Upper Klamath Basin, a two year reconnaissance survey of surface water and agricultural tile drain locations, focusing on nitrogen and phosphorus concentrations and mass transfers was conducted. Data was collected at 18 surface locations and 10 tile drain locations. Triplicate samples were taken every ten days during the growing season (April through October) and one or two times a month during the remainder of the months, depending on opportunity. No samples were taken from tile drains during the winter months because there was no irrigation and drainage during that period. Water samples were analyzed for phosphorus (total P, soluble reactive P, total filterable P, and particulate P) and nitrogen (total N, soluble N, Soluble organic N, total filterable N, particulate N, and ammonia N), temperature, pH and electrical conductivity, a measure of salinity or total dissolved solids. Analyses of data, including data quality, estimates of the transfer of nutrients in surface waters in the region, and hypotheses about the relationship between agriculture and water quality are reported. 1. The salt and nutrient content of surface waters increases nearly threefold as water moves through the watershed from the Lost River and J canal diversion to the Klamath Straits Drain. Mean ECW levels in input waters at the J canal diversion were approximately 250 \iS cm1, while water sampled at the D pump increased to 600 ^S cm"1 on average over the sample period. By the time water reenters the Klamath River, salt concentrations have increased to approximately 700 jaS cm1. 2. The ECW values observed in subsurface tile drains were higher on average than in input waters and surface waters elsewhere in the region, especially in the Lease Lands area of the Tulelake Irrigation District (TID). ECW values averaged approximately 2,500 ^S cm"1 . Recycling irrigation water through soils in the TID increases the salinity of the water, especially by the time it reaches and is reused in the Lease Lands area of the Tulelake National Wildlife Refuge (TLNWR). Soils in this part of the Klamath Project area are naturally high in salt. 3. Water temperatures in agricultural subsurface tile drains were significantly lower than surface water temperatures during the growing season when tile drains were active. pH values in tile drains were lower than surface water values. The temperature and pH of tile drains does not influence surface water values. 1. 4. For total phosphorus (TP) input waters at the J canal irrigation diversion for the TED averaged approximately 0.27 mg L1 for the two years reported. Water leaving the Tulelake Sumps at the D pump increases to 0.33 mg L1. Water leaving the Lower Klamath National Wildlife Refuge (LKNWR) sampled at the start of the Klamath Straits Drain, averaged 0.33 mg L1, similar to those at the D pump. TP increased further to 0.40 mg L"1 a the end of the Klamath Straits Drain. The overall increase in P concentration in surface waters was much less than for salt, suggesting that processes other than simple enrichment are occurring, particularly those associated with the exchange of sedimentary P and aquatic plant species. TN increases from 2.3 mg L"1 to 4.0 mg L1 over the same pathway. Atomic ratios (TN:TP) of surface water samples remain constant at approximately 10:1 throughout the system, suggesting that the amount of sediment and other small particulate matter in surface waters affects the values observed. The amount of sediment is influenced in part by the agitation of surface water as it passes through pumps and over weirs. 5. The average seasonal TP value in tile drains beneath farm fields is approximately 0.34 mg L"1 . While average total P values in subsurface tile drains were not different from those found at the D pump and the LKNWR outlet, the range in values was great (0.1 to 0.8 mg L1). Similarly, high NO3 -N values were observed at times in tile drains. Very high values in tile drains lead to the inference that some fertilizer N and P is lost in drainage water, combined with nutrients derived from decaying soil organic matter. The amount estimated as lost is much less than the amount of surplus fertilizer P applied and the amount of P surmised to be mineralized from decaying soil organic matter. P from fertilizer and decaying organic matter appears to be accumulating in soils and lake sediments in the region. 6. Ammonia N concentrations are at or below the limit of detection in subsurface agricultural tile lines and one to two orders of magnitude below the values observed in surface soils. Un ionized ammonia increases with temperature. Values above 0.25 mg L1 were observed in late summer at several locations. 7. Some leaching of soluble salts and nutrients is unavoidable when crops are irrigated. P fertilizer is applied at rates higher than crop removal, while fertilizer n is applied at rates less than crop removal. Reduced fertilizer use can help bring P inputs and outputs into balance and may reduce further any avoidable losses of P. This objective should be the subject of an agronomic research program in the region. 8. Surface waters entering the TDD, the TLNWR, and the LKNWR are already enriched with N and P. It seems unlikely that reducing N and P losses from farming in the TID, if possible, would influence surface water quality sufficiently to make them significantly less eutrophic. For P, the hypothesized threshold concentration limiting algae growth in fresh waters is 5 to 25 times smaller than the values observed in waters entering the TID for irrigation use. The addition of 1. nutrients from agriculture probably does not influence significantly surface water quality in the region. Wetland sediments, large amounts of organic matter in soils, and water introduced for irrigation contain essentially unlimited amounts of nutrients for aquatic plant growth. It is not clear how this circumstance could be changed under any reasonable time frame, if ever. 9. Using a TMDL approach may not result in reduced amounts of nutrients returned to the Klamath River because wetlands and farming practices in the southern portion of the Klamath Project result in the net removal of nutrients from the waters diverted for irrigation on a yearly basis, compared to allowing the same amount of water simply to flow down the river unused. Because of large errors of estimation for the amounts of water transferred, combined with smaller errors associated with estimating nutrient concentrations in water samples, and with year to year climate variation, TMDLs may not be an effective or efficient means of reducing nutrients in return flows to the Klamath River. Rational confidence limits for TMDLs may have to be too broad to be effective. Recycling of some drainage water for irrigation would reduce the amount of nutrients returned to the river more effectively than implementing a TMDL program. Title: Farming practices and water quality in the Upper Klamath Basin : final report to the California State Water Resources Control Board : 205j program Author: Danosky, Earl; Kaffka, Stephen Year: 2002, 2007, 2006 Summary The Upper Klamath Basin (UKB) is a high desert region straddling the California-Oregon border east of the Cascade Range. Irrigation and other agricultural practices in the U. S. Bureau of Reclamation's Klamath Project may result in impaired surface water quality, reducing its use for wildlife and fish in important national wildlife refuges that receive drainage water from farms, and in the Klamath River. By 2004, a system of total maximum daily loads (TMDL) for nutrients must be established for the Klamath River. To investigate the relationships among agricultural practices and surface water quality in the Upper Klamath Basin, a two year reconnaissance survey of surface water and agricultural tile drain locations, focusing on nitrogen and phosphorus concentrations and mass transfers was conducted. Data was collected at 18 surface locations and 10 tile drain locations. Triplicate samples were taken every ten days during the growing season (April through October) and one or two times a month during the remainder of the months, depending on opportunity. No samples were taken from tile drains during the winter months because there was no irrigation and drainage during that period. Water samples were analyzed for phosphorus (total P, soluble reactive P, total filterable P, and particulate P) and nitrogen (total N, soluble N, Soluble organic N, total filterable N, particulate N, and ammonia N), temperature, pH and electrical conductivity, a measure of salinity or total dissolved solids. Analyses of data, including data quality, estimates of the transfer of nutrients in surface waters in the region, and hypotheses about the relationship between agriculture and water quality are reported. 1. The salt and nutrient content of surface waters increases nearly threefold as water moves through the watershed from the Lost River and J canal diversion to the Klamath Straits Drain. Mean ECW levels in input waters at the J canal diversion were approximately 250 \iS cm1, while water sampled at the D pump increased to 600 ^S cm"1 on average over the sample period. By the time water reenters the Klamath River, salt concentrations have increased to approximately 700 jaS cm1. 2. The ECW values observed in subsurface tile drains were higher on average than in input waters and surface waters elsewhere in the region, especially in the Lease Lands area of the Tulelake Irrigation District (TID). ECW values averaged approximately 2,500 ^S cm"1 . Recycling irrigation water through soils in the TID increases the salinity of the water, especially by the time it reaches and is reused in the Lease Lands area of the Tulelake National Wildlife Refuge (TLNWR). Soils in this part of the Klamath Project area are naturally high in salt. 3. Water temperatures in agricultural subsurface tile drains were significantly lower than surface water temperatures during the growing season when tile drains were active. pH values in tile drains were lower than surface water values. The temperature and pH of tile drains does not influence surface water values. 1. 4. For total phosphorus (TP) input waters at the J canal irrigation diversion for the TED averaged approximately 0.27 mg L1 for the two years reported. Water leaving the Tulelake Sumps at the D pump increases to 0.33 mg L1. Water leaving the Lower Klamath National Wildlife Refuge (LKNWR) sampled at the start of the Klamath Straits Drain, averaged 0.33 mg L1, similar to those at the D pump. TP increased further to 0.40 mg L"1 a the end of the Klamath Straits Drain. The overall increase in P concentration in surface waters was much less than for salt, suggesting that processes other than simple enrichment are occurring, particularly those associated with the exchange of sedimentary P and aquatic plant species. TN increases from 2.3 mg L"1 to 4.0 mg L1 over the same pathway. Atomic ratios (TN:TP) of surface water samples remain constant at approximately 10:1 throughout the system, suggesting that the amount of sediment and other small particulate matter in surface waters affects the values observed. The amount of sediment is influenced in part by the agitation of surface water as it passes through pumps and over weirs. 5. The average seasonal TP value in tile drains beneath farm fields is approximately 0.34 mg L"1 . While average total P values in subsurface tile drains were not different from those found at the D pump and the LKNWR outlet, the range in values was great (0.1 to 0.8 mg L1). Similarly, high NO3 -N values were observed at times in tile drains. Very high values in tile drains lead to the inference that some fertilizer N and P is lost in drainage water, combined with nutrients derived from decaying soil organic matter. The amount estimated as lost is much less than the amount of surplus fertilizer P applied and the amount of P surmised to be mineralized from decaying soil organic matter. P from fertilizer and decaying organic matter appears to be accumulating in soils and lake sediments in the region. 6. Ammonia N concentrations are at or below the limit of detection in subsurface agricultural tile lines and one to two orders of magnitude below the values observed in surface soils. Un ionized ammonia increases with temperature. Values above 0.25 mg L1 were observed in late summer at several locations. 7. Some leaching of soluble salts and nutrients is unavoidable when crops are irrigated. P fertilizer is applied at rates higher than crop removal, while fertilizer n is applied at rates less than crop removal. Reduced fertilizer use can help bring P inputs and outputs into balance and may reduce further any avoidable losses of P. This objective should be the subject of an agronomic research program in the region. 8. Surface waters entering the TDD, the TLNWR, and the LKNWR are already enriched with N and P. It seems unlikely that reducing N and P losses from farming in the TID, if possible, would influence surface water quality sufficiently to make them significantly less eutrophic. For P, the hypothesized threshold concentration limiting algae growth in fresh waters is 5 to 25 times smaller than the values observed in waters entering the TID for irrigation use. The addition of 1. nutrients from agriculture probably does not influence significantly surface water quality in the region. Wetland sediments, large amounts of organic matter in soils, and water introduced for irrigation contain essentially unlimited amounts of nutrients for aquatic plant growth. It is not clear how this circumstance could be changed under any reasonable time frame, if ever. 9. Using a TMDL approach may not result in reduced amounts of nutrients returned to the Klamath River because wetlands and farming practices in the southern portion of the Klamath Project result in the net removal of nutrients from the waters diverted for irrigation on a yearly basis, compared to allowing the same amount of water simply to flow down the river unused. Because of large errors of estimation for the amounts of water transferred, combined with smaller errors associated with estimating nutrient concentrations in water samples, and with year to year climate variation, TMDLs may not be an effective or efficient means of reducing nutrients in return flows to the Klamath River. Rational confidence limits for TMDLs may have to be too broad to be effective. Recycling of some drainage water for irrigation would reduce the amount of nutrients returned to the river more effectively than implementing a TMDL program. Close