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• 121. [Article] Oregon Fish Habitat Distribution - Redband Trout

  Abstract -- These data describe areas of suitable habitat believed to be used currently and historically by redband trout populations. Columbia River redband trout, Oncorhynchus mykiss gairdneri, a subspecies ...

  Citation × Citation Citation Abstract Copy Title: Oregon Fish Habitat Distribution - Redband Trout Abstract -- These data describe areas of suitable habitat believed to be used currently and historically by redband trout populations. Columbia River redband trout, Oncorhynchus mykiss gairdneri, a subspecies of rainbow trout, Oncorhynchus mykiss, is native to the Fraser and Columbia River drainages, east of the Cascade Mountains to barrier falls on the Pend Oreille, Spokane, Snake and Kootenai rivers (Allendorf et al. 1980; Behnke 1992). Northern Great Basin redband trout, Oncorhynchus mykiss newberrii, are found in the closed basins of south-central Oregon as well as the Upper Klamath Lake basin. While Upper Klamath Lake now drains to the ocean, redband trout in the basin had ancestors that came from interior connections to the Great Basin and not from connections to the ocean (Behnke 1992). Redband trout, for the purposes of habitat distribution mapping, are generally defined as stream-resident O. mykiss gairdneri; migration is confined within their natal stream or watershed while steelhead, or the anadromous life form of O.mykiss gairdneri, migrate from their natal stream to the ocean and back. It is recognized, that while redband and steelhead habitat distribution datasets are published separately, overlapping areas represent the same subspecies. The term "currently" is defined as within the past five reproductive cycles. This information is based on sampling, the best professional opinion of Oregon Dept. of Fish and Wildlife or other natural resources agency staff biologists or modeling (see the fhdBasis field). Due to natural variations in run size, water conditions, or other environmental factors, some habitats identified may not be used annually. These data now comply with the Oregon Fish Habitat Distribution Data Standard that was adopted by the Oregon Geographic Information Council in February 2011. The Standard document can be found at: http://gis.oregon.gov/DAS/EISPD/GEO/standards/docs/OregonFishHabitatDistributionDataStandardv2.pdf Key features of the Oregon Fish Habitat Distribution Data include: species, run, life history, habitat use, origin, production, the basis for each record, originator name, originator entity and reference. Habitat distribution data are mapped at a 1:24,000 scale statewide and are based on the Pacific Northwest Framework Hydrography dataset. The data are made available as GIS files in both shapefile and ESRI geodatabase format. The data were developed over an extensive time period ranging from 1996 to 2011. Title: Oregon Fish Habitat Distribution - Redband Trout Abstract -- These data describe areas of suitable habitat believed to be used currently and historically by redband trout populations. Columbia River redband trout, Oncorhynchus mykiss gairdneri, a subspecies of rainbow trout, Oncorhynchus mykiss, is native to the Fraser and Columbia River drainages, east of the Cascade Mountains to barrier falls on the Pend Oreille, Spokane, Snake and Kootenai rivers (Allendorf et al. 1980; Behnke 1992). Northern Great Basin redband trout, Oncorhynchus mykiss newberrii, are found in the closed basins of south-central Oregon as well as the Upper Klamath Lake basin. While Upper Klamath Lake now drains to the ocean, redband trout in the basin had ancestors that came from interior connections to the Great Basin and not from connections to the ocean (Behnke 1992). Redband trout, for the purposes of habitat distribution mapping, are generally defined as stream-resident O. mykiss gairdneri; migration is confined within their natal stream or watershed while steelhead, or the anadromous life form of O.mykiss gairdneri, migrate from their natal stream to the ocean and back. It is recognized, that while redband and steelhead habitat distribution datasets are published separately, overlapping areas represent the same subspecies. The term "currently" is defined as within the past five reproductive cycles. This information is based on sampling, the best professional opinion of Oregon Dept. of Fish and Wildlife or other natural resources agency staff biologists or modeling (see the fhdBasis field). Due to natural variations in run size, water conditions, or other environmental factors, some habitats identified may not be used annually. These data now comply with the Oregon Fish Habitat Distribution Data Standard that was adopted by the Oregon Geographic Information Council in February 2011. The Standard document can be found at: http://gis.oregon.gov/DAS/EISPD/GEO/standards/docs/OregonFishHabitatDistributionDataStandardv2.pdf Key features of the Oregon Fish Habitat Distribution Data include: species, run, life history, habitat use, origin, production, the basis for each record, originator name, originator entity and reference. Habitat distribution data are mapped at a 1:24,000 scale statewide and are based on the Pacific Northwest Framework Hydrography dataset. The data are made available as GIS files in both shapefile and ESRI geodatabase format. The data were developed over an extensive time period ranging from 1996 to 2011. Close

• 122. [Article] Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System

  This is the publisher’s final pdf. The published article is copyrighted by Springer Science and can be found at: www.springer.com/.

  Citation × Citation Citation Abstract Copy Title: Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System Author: Reese, Douglas C., Pool, Suzan S., Brodeur, Richard D. This is the publisher’s final pdf. The published article is copyrighted by Springer Science and can be found at: www.springer.com/. Title: Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System Author: Reese, Douglas C., Pool, Suzan S., Brodeur, Richard D. This is the publisher’s final pdf. The published article is copyrighted by Springer Science and can be found at: www.springer.com/. Close

• 123. [Article] Effects of hypoxia on habitat quality of pelagic planktivorous fishes in the northern Gulf of Mexico

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research ...

  Citation × Citation Citation Abstract Copy Title: Effects of hypoxia on habitat quality of pelagic planktivorous fishes in the northern Gulf of Mexico Author: Stow, Craig A., Mason, Doran M., et al., Brandt, Stephen B., Zhang, Hongyan To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. Title: Effects of hypoxia on habitat quality of pelagic planktivorous fishes in the northern Gulf of Mexico Author: Stow, Craig A., Mason, Doran M., et al., Brandt, Stephen B., Zhang, Hongyan To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. Close

• 124. [Article] Floodplain emergent wetlands as rearing habitat for fishes and the implications for wetland enhancement

  Seasonal emergent wetlands in the Pacific Northwest have not been regarded traditionally as fish rearing habitat, despite access to such habitat when river flows overtop riverbanks and connect to the floodplain. ...

  Citation × Citation Citation Abstract Copy Title: Floodplain emergent wetlands as rearing habitat for fishes and the implications for wetland enhancement Author: Henning, Julie A. Seasonal emergent wetlands in the Pacific Northwest have not been regarded traditionally as fish rearing habitat, despite access to such habitat when river flows overtop riverbanks and connect to the floodplain. As a result, restoration and enhancement projects to remediate for the loss of such wetland habitat are being implemented for waterfowl and other wildlife with little consideration for fishes such as juvenile salmon (Oncorhynchus spp.). The objectives of this study were to examine the degree to which fish utilize emergent wetlands and to determine the influence of wetland enhancement on fish communities in the Chehalis River floodplain. Furthermore, I quantified the influence of enhanced wetlands on juvenile coho salmon. A minimum of 18 fish species utilized floodplain wetlands, and the most abundant were three-spine stickleback (Gasterosteus aculeatus) and Olympic mudminnow (Novumbra hubbsi). Both enhanced and unenhanced emergent wetlands had higher abundances of nongame native fishes than oxbow habitats. Coho salmon (Oncorhynchus kisutch) was the dominant salmonid at all sites and enhanced wetlands had significantly higher abundances of yearling coho salmon than unenhanced wetlands. Dissolved oxygen concentrations decreased in emergent wetlands throughout the season and were near lethal limits for juvenile salmon by June each year. Survival of fishes utilizing emergent wetlands was dependent on movement to the river before water quality decreased and/or the wetland became isolated and stranding occurred. Emigration patterns suggested that coho salmon yearling and young-of-the-year emigrated as habitat conditions declined. This was further supported by the results of the experimental release of yearling coho salmon. Yearling coho salmon benefited from rearing in enhanced wetland habitats where their growth and survival were comparable to studies of juvenile coho off-channel habitats. Title: Floodplain emergent wetlands as rearing habitat for fishes and the implications for wetland enhancement Author: Henning, Julie A. Seasonal emergent wetlands in the Pacific Northwest have not been regarded traditionally as fish rearing habitat, despite access to such habitat when river flows overtop riverbanks and connect to the floodplain. As a result, restoration and enhancement projects to remediate for the loss of such wetland habitat are being implemented for waterfowl and other wildlife with little consideration for fishes such as juvenile salmon (Oncorhynchus spp.). The objectives of this study were to examine the degree to which fish utilize emergent wetlands and to determine the influence of wetland enhancement on fish communities in the Chehalis River floodplain. Furthermore, I quantified the influence of enhanced wetlands on juvenile coho salmon. A minimum of 18 fish species utilized floodplain wetlands, and the most abundant were three-spine stickleback (Gasterosteus aculeatus) and Olympic mudminnow (Novumbra hubbsi). Both enhanced and unenhanced emergent wetlands had higher abundances of nongame native fishes than oxbow habitats. Coho salmon (Oncorhynchus kisutch) was the dominant salmonid at all sites and enhanced wetlands had significantly higher abundances of yearling coho salmon than unenhanced wetlands. Dissolved oxygen concentrations decreased in emergent wetlands throughout the season and were near lethal limits for juvenile salmon by June each year. Survival of fishes utilizing emergent wetlands was dependent on movement to the river before water quality decreased and/or the wetland became isolated and stranding occurred. Emigration patterns suggested that coho salmon yearling and young-of-the-year emigrated as habitat conditions declined. This was further supported by the results of the experimental release of yearling coho salmon. Yearling coho salmon benefited from rearing in enhanced wetland habitats where their growth and survival were comparable to studies of juvenile coho off-channel habitats. Close

• 125. [Article] Habitat-Fisheries Interactions and Destructive Fishing

  Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, ...

  Citation × Citation Citation Abstract Copy Title: Habitat-Fisheries Interactions and Destructive Fishing Author: Armstrong, Claire, Mikkelsen, Eirik Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Title: Habitat-Fisheries Interactions and Destructive Fishing Author: Armstrong, Claire, Mikkelsen, Eirik Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Close

• 126. [Article] Persistence and heterogeneity in habitat selection studies

  Recently the independent multinomial selections model (IMS) with the multinomial logit link has been suggested as an analysis tool for radio-telemetry habitat selection data. This model assumes independence ...

  Citation × Citation Citation Abstract Copy Title: Persistence and heterogeneity in habitat selection studies Author: Usner, Dale Wesley Recently the independent multinomial selections model (IMS) with the multinomial logit link has been suggested as an analysis tool for radio-telemetry habitat selection data. This model assumes independence between animals, independence between sightings within an animal, and identical multinomial habitat selection probabilities for all animals. We propose two generalizations to the IMS model. The first generalization is to allow a Markov chain dependence between consecutive sightings of the same animal. This generalization allows for both positive correlation (individuals persisting in the same habitat class in which they were previously sighted) and negative correlation (individual vacating the habitat class in which they were previously sighted). The second generalization is to allow for heterogeneity. Here, a hierarchical Dirichlet-multinomial distribution is used to allow for variability in selection probabilities between animals. This generalization accounts for over-dispersion of selection probabilities and allows for inference to the population of animals, assuming that the animals studied constitute a random sample from that population.. Both generalizations are one parameter extensions to the multinomial logit model and allow for testing the assumptions of identical multinomial selection probabilities and independence. These tests are performed using the score, Wald, and asymptotic likelihood ratio statistics. Estimates of model parameters are obtained using maximum likelihood techniques, and habitat characteristics are tested using drop-in-deviance statistics. Using example data, we show that persistence and heterogeneity exist in habitat selection data and illustrate the difference in analysis results between the IMS model and the persistence and heterogeneity models. Through simulation, we show that analyzing persistence data assuming independence between sightings within an animal gives liberal tests of significance for habitat characteristics when the data are generated with positive correlation and conservative tests of significance when the data are generated with negative correlation. Similarly, we show that analyzing heterogeneous data, assuming identical multinomial selection probabilities, gives liberal tests of significance for habitat characteristics. Title: Persistence and heterogeneity in habitat selection studies Author: Usner, Dale Wesley Recently the independent multinomial selections model (IMS) with the multinomial logit link has been suggested as an analysis tool for radio-telemetry habitat selection data. This model assumes independence between animals, independence between sightings within an animal, and identical multinomial habitat selection probabilities for all animals. We propose two generalizations to the IMS model. The first generalization is to allow a Markov chain dependence between consecutive sightings of the same animal. This generalization allows for both positive correlation (individuals persisting in the same habitat class in which they were previously sighted) and negative correlation (individual vacating the habitat class in which they were previously sighted). The second generalization is to allow for heterogeneity. Here, a hierarchical Dirichlet-multinomial distribution is used to allow for variability in selection probabilities between animals. This generalization accounts for over-dispersion of selection probabilities and allows for inference to the population of animals, assuming that the animals studied constitute a random sample from that population.. Both generalizations are one parameter extensions to the multinomial logit model and allow for testing the assumptions of identical multinomial selection probabilities and independence. These tests are performed using the score, Wald, and asymptotic likelihood ratio statistics. Estimates of model parameters are obtained using maximum likelihood techniques, and habitat characteristics are tested using drop-in-deviance statistics. Using example data, we show that persistence and heterogeneity exist in habitat selection data and illustrate the difference in analysis results between the IMS model and the persistence and heterogeneity models. Through simulation, we show that analyzing persistence data assuming independence between sightings within an animal gives liberal tests of significance for habitat characteristics when the data are generated with positive correlation and conservative tests of significance when the data are generated with negative correlation. Similarly, we show that analyzing heterogeneous data, assuming identical multinomial selection probabilities, gives liberal tests of significance for habitat characteristics. Close

• 127. [Article] Ocean habitat use in autumn by Chinook salmon in coastal waters of Oregon and California

  The published version of this article is copyrighted by Inter-Research and can be found here: http://www.int-res.com/journals/meps/meps-home/

  Citation × Citation Citation Abstract Copy Title: Ocean habitat use in autumn by Chinook salmon in coastal waters of Oregon and California Author: Boehlert, George W., Zedonis, Paul, Hinke, Jefferson T., Watters, George M. The published version of this article is copyrighted by Inter-Research and can be found here: http://www.int-res.com/journals/meps/meps-home/ Title: Ocean habitat use in autumn by Chinook salmon in coastal waters of Oregon and California Author: Boehlert, George W., Zedonis, Paul, Hinke, Jefferson T., Watters, George M. The published version of this article is copyrighted by Inter-Research and can be found here: http://www.int-res.com/journals/meps/meps-home/ Close

• 128. [Article] Arthropod community organization and development in pear

  Arthropod communities in pear are conceptualized as hierarchically organized systems in which several levels of organization or subsystems can be recognized between the species population level and the ...

  Citation × Citation Citation Abstract Copy Title: Arthropod community organization and development in pear Author: Gut, Larry J. Arthropod communities in pear are conceptualized as hierarchically organized systems in which several levels of organization or subsystems can be recognized between the species population level and the community as a whole. An individual tree is taken to be the community habitat with arthropod subcommunities developing on leaf, fruit and wood subcommunity habitats. Over a hundred species are reported to colonize one or more subcommunity habitats. Each subcommunity is composed of trophically organized systems of populations. Each system of populations is comprised of a guild of arthropods that use the habitat primarily for feeding but also for overwintering or egg deposition, and associated guilds of specialized predators, parasitoids and hyperparasitoids. Understanding community organization entails understanding how subsystems and their environments interact so as to be incorporated into a unified whole. Along with the relatively specialized interrelationships so important in organizing systems of populations, higher level community subsystems are coupled through the activities of phytophagous and predaceous generalists which feed in or take their prey from more than one subcommunity. In meeting the habitat requirements of each of its life history stages, several members of the pear community move from one subcommunity to another during the course of community development and serve to integrate these subsystems. Additional habitat, trophic and life history aspects of subsystem incorporation and interpenetration are discussed. Community development or change in organization through time is conceptualized as being jointly determined by the development of the habitat and the organization of the species pool. Seasonal development of the pear arthropod community is described in terms of changes in the species composition, size, and spatial distribution of guilds and subcommunities. Community habitat development is taken to be the primary determinant of changes in community structure and organization. As the season progresses, changes in the kinds and biomass of developmental states of each subcommunity habitat are accompanied by changes in the kinds, number or biomass, and distribution of associated community subsystems. Although the influence of habitat development on community development is emphasized, it is from the the species pool that arthropods colonize pear. The species that colonize, and their abundance and time of arrival is partially determined by the organization of this system of communities. Title: Arthropod community organization and development in pear Author: Gut, Larry J. Arthropod communities in pear are conceptualized as hierarchically organized systems in which several levels of organization or subsystems can be recognized between the species population level and the community as a whole. An individual tree is taken to be the community habitat with arthropod subcommunities developing on leaf, fruit and wood subcommunity habitats. Over a hundred species are reported to colonize one or more subcommunity habitats. Each subcommunity is composed of trophically organized systems of populations. Each system of populations is comprised of a guild of arthropods that use the habitat primarily for feeding but also for overwintering or egg deposition, and associated guilds of specialized predators, parasitoids and hyperparasitoids. Understanding community organization entails understanding how subsystems and their environments interact so as to be incorporated into a unified whole. Along with the relatively specialized interrelationships so important in organizing systems of populations, higher level community subsystems are coupled through the activities of phytophagous and predaceous generalists which feed in or take their prey from more than one subcommunity. In meeting the habitat requirements of each of its life history stages, several members of the pear community move from one subcommunity to another during the course of community development and serve to integrate these subsystems. Additional habitat, trophic and life history aspects of subsystem incorporation and interpenetration are discussed. Community development or change in organization through time is conceptualized as being jointly determined by the development of the habitat and the organization of the species pool. Seasonal development of the pear arthropod community is described in terms of changes in the species composition, size, and spatial distribution of guilds and subcommunities. Community habitat development is taken to be the primary determinant of changes in community structure and organization. As the season progresses, changes in the kinds and biomass of developmental states of each subcommunity habitat are accompanied by changes in the kinds, number or biomass, and distribution of associated community subsystems. Although the influence of habitat development on community development is emphasized, it is from the the species pool that arthropods colonize pear. The species that colonize, and their abundance and time of arrival is partially determined by the organization of this system of communities. Close

• 129. [Article] Ecoroofs in Multnomah County: Oregon as habitat for the Oregon vesper sparrow and common nighthawk

  78 pages. Examining committee chair:David Hulse

  Citation × Citation Citation Abstract Copy Title: Ecoroofs in Multnomah County: Oregon as habitat for the Oregon vesper sparrow and common nighthawk Author: Lewis, Alison Year: 2016 78 pages. Examining committee chair:David Hulse Title: Ecoroofs in Multnomah County: Oregon as habitat for the Oregon vesper sparrow and common nighthawk Author: Lewis, Alison Year: 2016 78 pages. Examining committee chair:David Hulse Close

• 130. [Article] Testing the ArcGIS Marine Data Model : busing spatial information to examine habitat utilization patterns of reef fish along the west coast of Hawaii

  In response to anthropogenic pressures that have degraded habitat and put marine resources at risk (Leslie et al., 2003; Mumby et al., 2001; Puniwai et al., 2003), there has been a growing interest in ...

  Citation × Citation Citation Abstract Copy Title: Testing the ArcGIS Marine Data Model : busing spatial information to examine habitat utilization patterns of reef fish along the west coast of Hawaii Author: Aaby, Alyssa Anne In response to anthropogenic pressures that have degraded habitat and put marine resources at risk (Leslie et al., 2003; Mumby et al., 2001; Puniwai et al., 2003), there has been a growing interest in the use of marine protected areas (MPAs) as a management tool to help slow, prevent or reverse negative anthropogenic changes. Recent studies have shown that the most effective MPAs are those which represent a full range of habitat types (Leslie et al., 2003; Carr et al., 2003). Yet, available scientific research has not evaluated the near-shore marine habitat utilization along the West Coast of Hawaii at the large-scales utilized by resource managers. Thus, this study focused on identifying the regional habitat utilization patterns for selected Hawaiian reef fish species to determine the most effective combination of habitat types. In addition, the habitat utilization analysis was used as one of several case studies to test the ArcGIS Marine Data Model’s (MDM) (Wright et al., 2001) adaptability to work with real-world data and perform real-world analyses, as well as meet the five goals outlined by the MDM Working Group (Wright et al., 2001). Created in 2001, by researchers from Oregon State University, Duke University, NOAA, the Danish Hydrologic Institute and ESRI, the MDM is a geodatabase template tailored to meet the needs of the marine GIS user community. Ultimately, this analysis will aid marine managers as it establishes correlations between small and large-scale habitat information, which provides a regional look at habitat utilization. Also, by testing the functionality of the MDM, its strengths and weaknesses will be identified so that it can be improved to better serve the marine GIS user community. Title: Testing the ArcGIS Marine Data Model : busing spatial information to examine habitat utilization patterns of reef fish along the west coast of Hawaii Author: Aaby, Alyssa Anne In response to anthropogenic pressures that have degraded habitat and put marine resources at risk (Leslie et al., 2003; Mumby et al., 2001; Puniwai et al., 2003), there has been a growing interest in the use of marine protected areas (MPAs) as a management tool to help slow, prevent or reverse negative anthropogenic changes. Recent studies have shown that the most effective MPAs are those which represent a full range of habitat types (Leslie et al., 2003; Carr et al., 2003). Yet, available scientific research has not evaluated the near-shore marine habitat utilization along the West Coast of Hawaii at the large-scales utilized by resource managers. Thus, this study focused on identifying the regional habitat utilization patterns for selected Hawaiian reef fish species to determine the most effective combination of habitat types. In addition, the habitat utilization analysis was used as one of several case studies to test the ArcGIS Marine Data Model’s (MDM) (Wright et al., 2001) adaptability to work with real-world data and perform real-world analyses, as well as meet the five goals outlined by the MDM Working Group (Wright et al., 2001). Created in 2001, by researchers from Oregon State University, Duke University, NOAA, the Danish Hydrologic Institute and ESRI, the MDM is a geodatabase template tailored to meet the needs of the marine GIS user community. Ultimately, this analysis will aid marine managers as it establishes correlations between small and large-scale habitat information, which provides a regional look at habitat utilization. Also, by testing the functionality of the MDM, its strengths and weaknesses will be identified so that it can be improved to better serve the marine GIS user community. Close