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• 1. [Article] Geospatial depiction of spring 2009 Chinook Salmon runs for Wallowa County, Oregon

  This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary ...

  Citation × Citation Citation Abstract Copy Title: Geospatial depiction of spring 2009 Chinook Salmon runs for Wallowa County, Oregon Author: Thomas, Samuel, Oregon State University, Department of Fish and Wildlife, State of Oregon This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Title: Geospatial depiction of spring 2009 Chinook Salmon runs for Wallowa County, Oregon Author: Thomas, Samuel, Oregon State University, Department of Fish and Wildlife, State of Oregon This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Close

• 2. [Article] Modeling of Chinook Salmon Runs on the North Umpqua River

  Paper entitled: Modeling of Chinook Salmon Runs on the North Umpqua River

  Citation × Citation Citation Abstract Copy Title: Modeling of Chinook Salmon Runs on the North Umpqua River Author: Jordan, Scott Paper entitled: Modeling of Chinook Salmon Runs on the North Umpqua River Title: Modeling of Chinook Salmon Runs on the North Umpqua River Author: Jordan, Scott Paper entitled: Modeling of Chinook Salmon Runs on the North Umpqua River Close

• 3. [Article] The size of the Oregon coastal salmon runs in the mid-1800s

  Abstract.- Increasing the abundance of salmon in coastal Oregon rivers and streams is a high priority public policy objective. Salmon runs have been reduced from pre-development conditions (typically defined ...

  Citation × Citation Citation Abstract Copy Title: The size of the Oregon coastal salmon runs in the mid-1800s Author: Meengs, Chad C. Abstract.- Increasing the abundance of salmon in coastal Oregon rivers and streams is a high priority public policy objective. Salmon runs have been reduced from pre-development conditions (typically defined as the 1 850s), but it is unclear by how much. Considerable resources have been allocated to restoring salmon runs, but it is uncertain what the current recovery potential is because much of the freshwater and estuarine habitat for salmon has been altered. The goals of all recovery efforts are based on assumptions, often unstated, for what the size if the runs were prior to significant habitat alteration, coupled with an estimate of the amount and quality of freshwater and estuarine habitat currently available. At one extreme, it may be that current run sizes reflect the recovery potential of the existing salmon habitat. At the other extreme, the recovery potential may be as high as the mid 1800 levels. Historical salmon runs sizes on the Oregon coast were estimated using two methods: (1) Converting aboriginal population levels and their salmon consumption rate into numbers of salmon; (2) Extrapolating cannery pack into numbers of salmon. Annual aboriginal harvest of all salmon species is estimated to have been approximately 10 million pounds/year or between 1.75 million and 5.36 million salmonids, a harvest level similar to that occurring during the height of commercial fishing on Oregon's coastal rivers in the late 1 800s and early 1 900s. Extrapolating cannery pack data, the estimated size of the late 1 800s aggregate runs of coho (Oncorhynchus kisutch) was 1.5-2.5 million. The estimated size of aggregate runs of chinook (Oncorhynchus tshawytscha) runs was 290,000-517,000. Compared to mid 1 800s coho estimates, current runs (during favorable ocean conditions), are 11-19%. During poor ocean conditions, current coho runs are 3-6% of the historical size. Title: The size of the Oregon coastal salmon runs in the mid-1800s Author: Meengs, Chad C. Abstract.- Increasing the abundance of salmon in coastal Oregon rivers and streams is a high priority public policy objective. Salmon runs have been reduced from pre-development conditions (typically defined as the 1 850s), but it is unclear by how much. Considerable resources have been allocated to restoring salmon runs, but it is uncertain what the current recovery potential is because much of the freshwater and estuarine habitat for salmon has been altered. The goals of all recovery efforts are based on assumptions, often unstated, for what the size if the runs were prior to significant habitat alteration, coupled with an estimate of the amount and quality of freshwater and estuarine habitat currently available. At one extreme, it may be that current run sizes reflect the recovery potential of the existing salmon habitat. At the other extreme, the recovery potential may be as high as the mid 1800 levels. Historical salmon runs sizes on the Oregon coast were estimated using two methods: (1) Converting aboriginal population levels and their salmon consumption rate into numbers of salmon; (2) Extrapolating cannery pack into numbers of salmon. Annual aboriginal harvest of all salmon species is estimated to have been approximately 10 million pounds/year or between 1.75 million and 5.36 million salmonids, a harvest level similar to that occurring during the height of commercial fishing on Oregon's coastal rivers in the late 1 800s and early 1 900s. Extrapolating cannery pack data, the estimated size of the late 1 800s aggregate runs of coho (Oncorhynchus kisutch) was 1.5-2.5 million. The estimated size of aggregate runs of chinook (Oncorhynchus tshawytscha) runs was 290,000-517,000. Compared to mid 1 800s coho estimates, current runs (during favorable ocean conditions), are 11-19%. During poor ocean conditions, current coho runs are 3-6% of the historical size. Close

• 4. [Article] Report on "Yaquina River" : Investigation sponsored by Oregon State Fish Commission, July, 1936

  Reports on potential sites for a salmon hatchery on the Yaquina River. "Each tributary has been carefully studied and special attention given to those creeks on which possible hatchery sites were found. ...

  Citation × Citation Citation Abstract Copy Title: Report on "Yaquina River" : Investigation sponsored by Oregon State Fish Commission, July, 1936 Author: Reynolds, John, Ledgerwood, Edgar, Oregon. Fish Commission Reports on potential sites for a salmon hatchery on the Yaquina River. "Each tributary has been carefully studied and special attention given to those creeks on which possible hatchery sites were found. Items given consideration on each stream were: pond site locations, flow of water, drop of stream bed, nature of creek bottom, temperature of water, flow of water, flood water levels, salmon run, obstructions to salmon run, stranded fingerlings, ownership of land, water rights, irrigation projects, etc." (From the Introduction) Includes hand-drawn maps. Title: Report on "Yaquina River" : Investigation sponsored by Oregon State Fish Commission, July, 1936 Author: Reynolds, John, Ledgerwood, Edgar, Oregon. Fish Commission Reports on potential sites for a salmon hatchery on the Yaquina River. "Each tributary has been carefully studied and special attention given to those creeks on which possible hatchery sites were found. Items given consideration on each stream were: pond site locations, flow of water, drop of stream bed, nature of creek bottom, temperature of water, flow of water, flood water levels, salmon run, obstructions to salmon run, stranded fingerlings, ownership of land, water rights, irrigation projects, etc." (From the Introduction) Includes hand-drawn maps. Close

• 5. [Article] The future of the Columbia River salmon fisheries

  The salmon runs of the Columbia River constitute one of the most important natural resources of the states of Oregon and Washington. Thousands of people are dependent, wholly or in part, upon these resources ...

  Citation × Citation Citation Abstract Copy Title: The future of the Columbia River salmon fisheries Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 The salmon runs of the Columbia River constitute one of the most important natural resources of the states of Oregon and Washington. Thousands of people are dependent, wholly or in part, upon these resources for their livelihood; and their welfare is dependent upon the maintenance of the salmon runs. It is to the special interest of these people that the salmon supply be maintained at the level of maximum productivity and, indirectly, it is to the interest of all the citizens of these states that this be done. In recent years it has become increasingly evident that these resources, taken as. a whole, are decreasing in productivity and it has been frequently pointed out that this decrease is due primarily to the operation of two factors-- a very intensive fishery and a reduction in spawning and rearing areas due to the utilization of the water resources of the Columbia basin for other purposes. These influences, however, have affected the several species of salmon that are found in the Columbia River quite differently; the more valuable species, Chinooks and bluebacks, showing more evidence of depletion than do the other species, silver salmon, chums and steelhead. Title: The future of the Columbia River salmon fisheries Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 The salmon runs of the Columbia River constitute one of the most important natural resources of the states of Oregon and Washington. Thousands of people are dependent, wholly or in part, upon these resources for their livelihood; and their welfare is dependent upon the maintenance of the salmon runs. It is to the special interest of these people that the salmon supply be maintained at the level of maximum productivity and, indirectly, it is to the interest of all the citizens of these states that this be done. In recent years it has become increasingly evident that these resources, taken as. a whole, are decreasing in productivity and it has been frequently pointed out that this decrease is due primarily to the operation of two factors-- a very intensive fishery and a reduction in spawning and rearing areas due to the utilization of the water resources of the Columbia basin for other purposes. These influences, however, have affected the several species of salmon that are found in the Columbia River quite differently; the more valuable species, Chinooks and bluebacks, showing more evidence of depletion than do the other species, silver salmon, chums and steelhead. Close

• 6. [Article] Policy Conundrum: Restoring Wild Salmon to the Pacific Northwest

  Restoring wild salmon runs to the Pacific Northwest is technically challenging, politically nasty, and socially divisive. Pa st restoration efforts have been largely unsuccessful. Society’s failure to ...

  Citation × Citation Citation Abstract Copy Title: Policy Conundrum: Restoring Wild Salmon to the Pacific Northwest Author: Lackey, Robert T. Year: 2001 Restoring wild salmon runs to the Pacific Northwest is technically challenging, politically nasty, and socially divisive. Pa st restoration efforts have been largely unsuccessful. Society’s failure to reverse the continuing decline of wild salmon has the characteristics of a policy conundrum: nearly everyone supports, abstractly at least, restoring salmon runs; considerable public and private resources have been devoted to their restoration; but society collectively remains evidently unwilling to make the painful decisions clearly necessary to arrest their decline. The salmon policy conundrum is characterized by competing societal priorities being adjudicated in a political environment where few are willing to acknowledge publicly the future consequences of prior de facto policy choices. Decisions already made have greatly circumscribed the status of wild salmon in the Pacific Northwest through at least the next several decades. Barring a near wholesale reversal of many of society’s previous decisions (and apparent priorities), and allowing for considerable year-to-year and decade-to-decade variation in run size due in part to oscillations in climate and oceanic conditions, I conclude that through the twenty-first century, many, perhaps most, stocks of wild salmon in the Pacific Northwest likely will remain at their current low levels or continue to decline in spite of current protection and restoration efforts. Title: Policy Conundrum: Restoring Wild Salmon to the Pacific Northwest Author: Lackey, Robert T. Year: 2001 Restoring wild salmon runs to the Pacific Northwest is technically challenging, politically nasty, and socially divisive. Pa st restoration efforts have been largely unsuccessful. Society’s failure to reverse the continuing decline of wild salmon has the characteristics of a policy conundrum: nearly everyone supports, abstractly at least, restoring salmon runs; considerable public and private resources have been devoted to their restoration; but society collectively remains evidently unwilling to make the painful decisions clearly necessary to arrest their decline. The salmon policy conundrum is characterized by competing societal priorities being adjudicated in a political environment where few are willing to acknowledge publicly the future consequences of prior de facto policy choices. Decisions already made have greatly circumscribed the status of wild salmon in the Pacific Northwest through at least the next several decades. Barring a near wholesale reversal of many of society’s previous decisions (and apparent priorities), and allowing for considerable year-to-year and decade-to-decade variation in run size due in part to oscillations in climate and oceanic conditions, I conclude that through the twenty-first century, many, perhaps most, stocks of wild salmon in the Pacific Northwest likely will remain at their current low levels or continue to decline in spite of current protection and restoration efforts. Close

• 7. [Article] The salmon resources of the Willamette Basin

  This document describes the life history and abundance of both the spring Chinook salmon and the Silver salmon in the Willamette River. It also goes into detail about various factors affecting Willamette ...

  Citation × Citation Citation Abstract Copy Title: The salmon resources of the Willamette Basin Author: Oregon. Fish Commission This document describes the life history and abundance of both the spring Chinook salmon and the Silver salmon in the Willamette River. It also goes into detail about various factors affecting Willamette salmon runs., including pollution, dams, and logging. Title: The salmon resources of the Willamette Basin Author: Oregon. Fish Commission This document describes the life history and abundance of both the spring Chinook salmon and the Silver salmon in the Willamette River. It also goes into detail about various factors affecting Willamette salmon runs., including pollution, dams, and logging. Close

• 8. [Article] Salmon fisheries of the coastal rivers of Oregon south of the Columbia

  In spite of the progressive restrictions of the commercial river fishery during the past fifty years, the trend of the salmon populations of the coastal rivers has been downward. It is almost impossible ...

  Citation × Citation Citation Abstract Copy Title: Salmon fisheries of the coastal rivers of Oregon south of the Columbia Author: Gharrett, John T., Oregon. Fish Commission, Hodges, John I. In spite of the progressive restrictions of the commercial river fishery during the past fifty years, the trend of the salmon populations of the coastal rivers has been downward. It is almost impossible to isolate and analyze separately the causes of this decline, and any attempt to saddle one factor with the responsibility is an oversimplification of the facts. The salmon runs have too long been taken for granted. During the rapid development of the coastal area, the welfare of the fish was ignored. The physical character of the watersheds was changed as the timber was stripped off, and in these same operations streams were blocked by log jams, mill dams, splash dams and even the gravel from the spawning beds of the streams was removed to be used in road construction. At the same time other water uses were developed for power and irrigation. While the productive capacity of the streams was being reduced and the runs resultantly lowered, the fishermen competed with each other for the remaining fish and blamed one another for the lack of fish. Apparently, at no time until recent years was a serious program developed or even considered for the conservation of the salmon runs. To date with the possible exception of one or two instances pollution has not been a serious factor in the decline of the salmon runs. The commercial river fisheries are of considerable importance to the economy of various communities on the Oregon coast. They also provide a source of salmon to those who have no other access to this productive natural resource. The recreational salmon fishery is also an important source of income to Oregon coastal communities. It is, therefore, important to these communities and the State as a whole that the salmon runs be maintained at their maximum productive level. To accomplish this the Oregon Fish Commission has developed a long range management program for the coastal rivers. This encompasses stream clearance and improvement projects, the use of artificial propagation in introducing runs and supplementing natural runs, and the close regulation of the commercial river and offshore fisheries. This program has not been underway long enough to ascertain its success, but in several instances it appears to offer promise. However, close check is being kept on the runs in order that the results of this program can be evaluated as soon as possible. The stream surveys and other observations indicate that the coastal rivers and their salmon populations are not beyond redemption, and that under proper management can be made to yield annually several times their present production. Title: Salmon fisheries of the coastal rivers of Oregon south of the Columbia Author: Gharrett, John T., Oregon. Fish Commission, Hodges, John I. In spite of the progressive restrictions of the commercial river fishery during the past fifty years, the trend of the salmon populations of the coastal rivers has been downward. It is almost impossible to isolate and analyze separately the causes of this decline, and any attempt to saddle one factor with the responsibility is an oversimplification of the facts. The salmon runs have too long been taken for granted. During the rapid development of the coastal area, the welfare of the fish was ignored. The physical character of the watersheds was changed as the timber was stripped off, and in these same operations streams were blocked by log jams, mill dams, splash dams and even the gravel from the spawning beds of the streams was removed to be used in road construction. At the same time other water uses were developed for power and irrigation. While the productive capacity of the streams was being reduced and the runs resultantly lowered, the fishermen competed with each other for the remaining fish and blamed one another for the lack of fish. Apparently, at no time until recent years was a serious program developed or even considered for the conservation of the salmon runs. To date with the possible exception of one or two instances pollution has not been a serious factor in the decline of the salmon runs. The commercial river fisheries are of considerable importance to the economy of various communities on the Oregon coast. They also provide a source of salmon to those who have no other access to this productive natural resource. The recreational salmon fishery is also an important source of income to Oregon coastal communities. It is, therefore, important to these communities and the State as a whole that the salmon runs be maintained at their maximum productive level. To accomplish this the Oregon Fish Commission has developed a long range management program for the coastal rivers. This encompasses stream clearance and improvement projects, the use of artificial propagation in introducing runs and supplementing natural runs, and the close regulation of the commercial river and offshore fisheries. This program has not been underway long enough to ascertain its success, but in several instances it appears to offer promise. However, close check is being kept on the runs in order that the results of this program can be evaluated as soon as possible. The stream surveys and other observations indicate that the coastal rivers and their salmon populations are not beyond redemption, and that under proper management can be made to yield annually several times their present production. Close

• 9. [Article] The salmon runs of the Columbia River in 1938

  Exceptional data are available for the study of the salmon runs of the Columbia River in 1938. Detailed figures on catch were supplied by Oregon and Washington in such form that they could readily be combined ...

  Citation × Citation Citation Abstract Copy Title: The salmon runs of the Columbia River in 1938 Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 Exceptional data are available for the study of the salmon runs of the Columbia River in 1938. Detailed figures on catch were supplied by Oregon and Washington in such form that they could readily be combined with the counts at Bonneville Dam to provide a basis for estimating the escapement. Tables show the catch of each species for each week in each of six zones, and the counts at Bonneville and Rock Island dams. The general course of the run of each species is shown. The numbers of fish bound for the spawning grounds above Rock Island Dam are estimated as follows: Chinook salmon entering Columbia River before May 1, 4 percent; during May, 6 percent; June and July, 15 percent; and August to December, 1 percent. Blueback salmon entering the river during the above periods, 40 percent. Steelhead trout entering the river during June to September, 1 percent; during the rest of the year, 10 percent. Fishing intensities are shown by escapement to catch ratios. Percentages of chinook salmon escapement are less than 15 during May; 17 during June and July; and 33 during the remainder of the year. The June and July runs are now greatly depleted, and an important part of these runs spawns above Rock Island Dam. The blueback salmon escapement is about 20 percent, and of steelhead trout about 33 percent. Weekly and seasonal closed periods are shown to be almost entirely ineffective for increasing the spawning escapement. Exploitation is further increased by the intensive troll fishery conducted from Monterey Bay to southeastern Alaska. Chinook salmon are also subjected to a sport fishery of considerable importance. Main runs of salmon to the Columbia River are practically unprotected and are fished with destructive intensity. Title: The salmon runs of the Columbia River in 1938 Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 Exceptional data are available for the study of the salmon runs of the Columbia River in 1938. Detailed figures on catch were supplied by Oregon and Washington in such form that they could readily be combined with the counts at Bonneville Dam to provide a basis for estimating the escapement. Tables show the catch of each species for each week in each of six zones, and the counts at Bonneville and Rock Island dams. The general course of the run of each species is shown. The numbers of fish bound for the spawning grounds above Rock Island Dam are estimated as follows: Chinook salmon entering Columbia River before May 1, 4 percent; during May, 6 percent; June and July, 15 percent; and August to December, 1 percent. Blueback salmon entering the river during the above periods, 40 percent. Steelhead trout entering the river during June to September, 1 percent; during the rest of the year, 10 percent. Fishing intensities are shown by escapement to catch ratios. Percentages of chinook salmon escapement are less than 15 during May; 17 during June and July; and 33 during the remainder of the year. The June and July runs are now greatly depleted, and an important part of these runs spawns above Rock Island Dam. The blueback salmon escapement is about 20 percent, and of steelhead trout about 33 percent. Weekly and seasonal closed periods are shown to be almost entirely ineffective for increasing the spawning escapement. Exploitation is further increased by the intensive troll fishery conducted from Monterey Bay to southeastern Alaska. Chinook salmon are also subjected to a sport fishery of considerable importance. Main runs of salmon to the Columbia River are practically unprotected and are fished with destructive intensity. Close

• 10. [Article] Differential use of salmon by vertebrate consumers: implications for conservation

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/

  Citation × Citation Citation Abstract Copy Title: Differential use of salmon by vertebrate consumers: implications for conservation Author: Allen, Jennifer M., Wilmers, Christopher C., Wheat, Rachel E., Levi, Taal This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Title: Differential use of salmon by vertebrate consumers: implications for conservation Author: Allen, Jennifer M., Wilmers, Christopher C., Wheat, Rachel E., Levi, Taal This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Close

• 11. [Article] Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s central valley

  Suggested citation: "Banks, Michael A. (2013): Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s Central Valley. Oregon State University Libraries. ...

  Citation × Citation Citation Abstract Copy Title: Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s central valley Author: Brandes, Pat, Rashbrook, Vanessa K., Bernier-Latmani, Jeremiah, Banks, Michael A., Jacobson, David P., Greene, Sheila, O’Malley, Kathleen G., Greig, Carolyn A., Van Sickle, John, Meusnier, Isabelle, Ardren, William R., Smith, Christian T. Year: 2000 Suggested citation: "Banks, Michael A. (2013): Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s Central Valley. Oregon State University Libraries. Dataset. doi:10.7267/N9KW5CXX" Title: Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s central valley Author: Brandes, Pat, Rashbrook, Vanessa K., Bernier-Latmani, Jeremiah, Banks, Michael A., Jacobson, David P., Greene, Sheila, O’Malley, Kathleen G., Greig, Carolyn A., Van Sickle, John, Meusnier, Isabelle, Ardren, William R., Smith, Christian T. Year: 2000 Suggested citation: "Banks, Michael A. (2013): Molecular genetic characterization of Chinook salmon (Oncorhynchus tschawytscha) runs for California’s Central Valley. Oregon State University Libraries. Dataset. doi:10.7267/N9KW5CXX" Close

• 12. [Article] An investigation into the genetic basis of migration timing in Chinook salmon (Oncorhynchus tshawytscha)

  The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important ...

  Citation × Citation Citation Abstract Copy Title: An investigation into the genetic basis of migration timing in Chinook salmon (Oncorhynchus tshawytscha) Author: O'Malley, Kathleen Gallen, 1976- The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important adaptation for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which individuals return to natal breeding sites within a reproductive season. Here, I tested for adaptive genetic differentiation among temporally divergent migratory runs using candidate loci. First, I isolated and characterized two copies of the circadian rhythm gene, Clock, from Chinook salmon (OtsClock1a and OtsClock1b). Phylogenetic analysis revealed that these copies likely arose subsequent to the salmonid genome-wide duplication event. Each copy contains a polyglutamine repeat motif (PolyQ), an essential binding domain of this transcription factor. However, a 1200bp non-coding segment, showing >90% sequence identity to the Salmo salar Transferrin gene, is located downstream of the OtsClock1a PolyQ, yet absent from OtsClock1b providing evidence for nonhomologous recombination. Another candidate, Ots515NWFSC, shows sequence identity to three salmonid genes central to reproductive development: Gonadotropin-releasing hormone, CYP19b-I, and Ghrelin. I employed OtsClock1b and Ots515NWFSC to test for differentiation in two unique systems: Feather River, California; and Waitaki and Poulter Rivers, New Zealand. Based on length variation in these candidate genes, Feather River fall and spring run Chinook salmon are genetically differentiated. In contrast, these seasonal runs are genetically indistinguishable based on neutral microsatellite loci. Correspondingly, temporally divergent Chinook salmon runs in the Waitaki and Poulter Rivers show greater differentiation based on variation in OtsClock1b and Ots515NWFSC than microsatellite loci. Tests for selective neutrality indicate that OtsClock1b and Ots515NWFSC are likely under selection in both systems. In addition, I found evidence for a latitudinal cline in two OtsClock1b PolyQ alleles among 42 Chinook salmon runs which is likely maintained by selection and thus may reflect an adaptation to photoperiodic parameters. Lastly, a hierarchical gene diversity analysis of OtsClock1b PolyQ variation revealed that run timing explained 43.7% of the overall genetic variance which contrast sharply with the 8.1% calculated for microsatellite loci. Evidence presented here suggests that OtsClock1b and Ots515NWFSC may influence migration timing of Chinook salmon. Title: An investigation into the genetic basis of migration timing in Chinook salmon (Oncorhynchus tshawytscha) Author: O'Malley, Kathleen Gallen, 1976- The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important adaptation for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which individuals return to natal breeding sites within a reproductive season. Here, I tested for adaptive genetic differentiation among temporally divergent migratory runs using candidate loci. First, I isolated and characterized two copies of the circadian rhythm gene, Clock, from Chinook salmon (OtsClock1a and OtsClock1b). Phylogenetic analysis revealed that these copies likely arose subsequent to the salmonid genome-wide duplication event. Each copy contains a polyglutamine repeat motif (PolyQ), an essential binding domain of this transcription factor. However, a 1200bp non-coding segment, showing >90% sequence identity to the Salmo salar Transferrin gene, is located downstream of the OtsClock1a PolyQ, yet absent from OtsClock1b providing evidence for nonhomologous recombination. Another candidate, Ots515NWFSC, shows sequence identity to three salmonid genes central to reproductive development: Gonadotropin-releasing hormone, CYP19b-I, and Ghrelin. I employed OtsClock1b and Ots515NWFSC to test for differentiation in two unique systems: Feather River, California; and Waitaki and Poulter Rivers, New Zealand. Based on length variation in these candidate genes, Feather River fall and spring run Chinook salmon are genetically differentiated. In contrast, these seasonal runs are genetically indistinguishable based on neutral microsatellite loci. Correspondingly, temporally divergent Chinook salmon runs in the Waitaki and Poulter Rivers show greater differentiation based on variation in OtsClock1b and Ots515NWFSC than microsatellite loci. Tests for selective neutrality indicate that OtsClock1b and Ots515NWFSC are likely under selection in both systems. In addition, I found evidence for a latitudinal cline in two OtsClock1b PolyQ alleles among 42 Chinook salmon runs which is likely maintained by selection and thus may reflect an adaptation to photoperiodic parameters. Lastly, a hierarchical gene diversity analysis of OtsClock1b PolyQ variation revealed that run timing explained 43.7% of the overall genetic variance which contrast sharply with the 8.1% calculated for microsatellite loci. Evidence presented here suggests that OtsClock1b and Ots515NWFSC may influence migration timing of Chinook salmon. Close

• 13. [Article] A Review of Fishery Research in the Pacific Area

  It is impossible to place a date on the beginning of fishery research. It no doubt existed in a primitive way among the earliest civilizations. For practical reasons, the scope of this paper is limited ...

  Citation × Citation Citation Abstract Copy Title: A Review of Fishery Research in the Pacific Area Author: Atkinson, Clinton E. Year: 2001 It is impossible to place a date on the beginning of fishery research. It no doubt existed in a primitive way among the earliest civilizations. For practical reasons, the scope of this paper is limited to the four countries bordering the North Pacific--Japan, Canada, Russia and the United States--and to research directed towards a better understanding and management of the fishery resources of commercial value. It is interesting that development of fishery research in three of the four countries was prompted by a serious decline in their salmon runs and by the adoption of hatcheries as a means to restore or maintain the depleted runs. The only difference was in Russia where fishery research began with a decline in sturgeon in the Volga and the Caspian Sea. In the Russian Far East, however, it again was a decline in salmon in the Amur and Sakhalin rivers and all were linked primarily to loss or damage to their freshwater environment. Overfishing and destructive fishing practices were recognized almost from the beginning but it was not until 1917 that the work of Thompson on Pacific halibut led to the development of modern theory of population dynamics for the management of the fisheries. Following are notes on the development of fishery research in each of the four countries. Title: A Review of Fishery Research in the Pacific Area Author: Atkinson, Clinton E. Year: 2001 It is impossible to place a date on the beginning of fishery research. It no doubt existed in a primitive way among the earliest civilizations. For practical reasons, the scope of this paper is limited to the four countries bordering the North Pacific--Japan, Canada, Russia and the United States--and to research directed towards a better understanding and management of the fishery resources of commercial value. It is interesting that development of fishery research in three of the four countries was prompted by a serious decline in their salmon runs and by the adoption of hatcheries as a means to restore or maintain the depleted runs. The only difference was in Russia where fishery research began with a decline in sturgeon in the Volga and the Caspian Sea. In the Russian Far East, however, it again was a decline in salmon in the Amur and Sakhalin rivers and all were linked primarily to loss or damage to their freshwater environment. Overfishing and destructive fishing practices were recognized almost from the beginning but it was not until 1917 that the work of Thompson on Pacific halibut led to the development of modern theory of population dynamics for the management of the fisheries. Following are notes on the development of fishery research in each of the four countries. Close

• 14. [Article] Addressing Fish Uncertainty: The Quest for Rational Decisionmaking

  This paper explores the policy efforts dealing with the problem of declining Pacific Northwest fish runs. Results have been disappointing. Decades of expensive efforts costing billion of dollars have been ...

  Citation × Citation Citation Abstract Copy Title: Addressing Fish Uncertainty: The Quest for Rational Decisionmaking Author: Koss, Patricia, Katz, Mike, Shawcross, Jennifer Year: 2001 This paper explores the policy efforts dealing with the problem of declining Pacific Northwest fish runs. Results have been disappointing. Decades of expensive efforts costing billion of dollars have been relatively ineffective in increasing salmon runs. Many species of wild fish continue to decline or remain significantly below target levels of recovery. The issue of scientific and economic uncertainties is examined. Past and current policies have failed to adequately account for these uncertainties. One overall recommendation of this paper is that policymakers and their advisors should explicitly identify any decision criteria upon which they base their judgments or conclusions. A second recommendation is that policy analysis should be explicit about uncertainties. We offer the eighteen decision rules for fashioning fish recovery decisions in an environment of uncertainty. Title: Addressing Fish Uncertainty: The Quest for Rational Decisionmaking Author: Koss, Patricia, Katz, Mike, Shawcross, Jennifer Year: 2001 This paper explores the policy efforts dealing with the problem of declining Pacific Northwest fish runs. Results have been disappointing. Decades of expensive efforts costing billion of dollars have been relatively ineffective in increasing salmon runs. Many species of wild fish continue to decline or remain significantly below target levels of recovery. The issue of scientific and economic uncertainties is examined. Past and current policies have failed to adequately account for these uncertainties. One overall recommendation of this paper is that policymakers and their advisors should explicitly identify any decision criteria upon which they base their judgments or conclusions. A second recommendation is that policy analysis should be explicit about uncertainties. We offer the eighteen decision rules for fashioning fish recovery decisions in an environment of uncertainty. Close

• 15. [Article] Spatial and Temporal Variability of Macroinvertebrates in Spawning and Non-Spawning Habitats during a Salmon Run in Southeast Alaska

  This is the publisher’s final pdf. The published article is copyrighted by PLoS ONE and can be found at: http://www.plosone.org/home.action.

  Citation × Citation Citation Abstract Copy Title: Spatial and Temporal Variability of Macroinvertebrates in Spawning and Non-Spawning Habitats during a Salmon Run in Southeast Alaska Author: Merritt, Richard W., Campbell, Emily Y., Benbow, M. Eric, Cummins, Kenneth W. This is the publisher’s final pdf. The published article is copyrighted by PLoS ONE and can be found at: http://www.plosone.org/home.action. Title: Spatial and Temporal Variability of Macroinvertebrates in Spawning and Non-Spawning Habitats during a Salmon Run in Southeast Alaska Author: Merritt, Richard W., Campbell, Emily Y., Benbow, M. Eric, Cummins, Kenneth W. This is the publisher’s final pdf. The published article is copyrighted by PLoS ONE and can be found at: http://www.plosone.org/home.action. Close

• 16. [Article] Economic Interactions of Farmed Salmon and North American Wild Salmon

  Research Paper

  Citation × Citation Citation Abstract Copy Title: Economic Interactions of Farmed Salmon and North American Wild Salmon Author: Knapp, Gunnar, Anderson, James, Roheim, Cathy A. Research Paper Title: Economic Interactions of Farmed Salmon and North American Wild Salmon Author: Knapp, Gunnar, Anderson, James, Roheim, Cathy A. Research Paper Close

• 17. [Article] Testing advances in molecular discrimination among Chinook salmon life histories: evidence from a blind test

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) ...

  Citation × Citation Citation Abstract Copy Title: Testing advances in molecular discrimination among Chinook salmon life histories: evidence from a blind test Author: Banks, Michael A., Ardren, William R., Bernier-Latmani, Jeremiah, Meusnier, Isabelle, Van Sickle, John, Rashbrook, Vanessa K., Jacobson, David P., Smith, Christian T., O'Malley, Kathleen G., Greig, Carolyn A. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291365-2052. Title: Testing advances in molecular discrimination among Chinook salmon life histories: evidence from a blind test Author: Banks, Michael A., Ardren, William R., Bernier-Latmani, Jeremiah, Meusnier, Isabelle, Van Sickle, John, Rashbrook, Vanessa K., Jacobson, David P., Smith, Christian T., O'Malley, Kathleen G., Greig, Carolyn A. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291365-2052. Close

• 18. [Article] Market Interactions between Aquaculture and Common-Property Fisheries: Examining the Empirical Evidence from the Bristol Bay Sockeye Salmon Fishery in Alaska

  The impressive growth of world aquaculture has led to profound transformations in the economic structure of several capture fisheries. Evidence from the Alaska salmon fisheries supports this argument as ...

  Citation × Citation Citation Abstract Copy Title: Market Interactions between Aquaculture and Common-Property Fisheries: Examining the Empirical Evidence from the Bristol Bay Sockeye Salmon Fishery in Alaska Author: Valderrama, Diego, Anderson, James The impressive growth of world aquaculture has led to profound transformations in the economic structure of several capture fisheries. Evidence from the Alaska salmon fisheries supports this argument as a connection has been suggested between the recent trends of declining ex-vessel prices and the rapid development of salmon farming elsewhere in the world. In Bristol Bay, home of the largest sockeye salmon runs in the globe, participation in the limited-entry fishery has declined by approximately 20% since 2001. Likewise, permit market values have plummeted to historic low levels, with economic conditions not likely to improve significantly in the mid-term future. To examine this problem, we develop a formal analytical framework for the study of market interactions between a limited-entry fishery and an aquaculture sector. We adapt the model of regulated open-access developed by Homans and Wilen to examine the implications of aquaculture development on the actions of fishermen and the regulatory sector in a restricted-access setting. Results indicate that the emergence of a low-cost aquaculture sector brings about important structural changes in the restricted-access fishery, rendering limited-entry regulations irrelevant as participation rates decline due to the falling prices. An important implication is that, despite the limited-entry constraint, the fishery moves to an institutional arrangement closer to regulated open access, with resource rents drastically reduced. Model predictions are compared with the empirical evidence available from the Bristol Bay sockeye fishery. The advantages of cooperative management relative to the current competitive structure of the fishery are highlighted. Title: Market Interactions between Aquaculture and Common-Property Fisheries: Examining the Empirical Evidence from the Bristol Bay Sockeye Salmon Fishery in Alaska Author: Valderrama, Diego, Anderson, James The impressive growth of world aquaculture has led to profound transformations in the economic structure of several capture fisheries. Evidence from the Alaska salmon fisheries supports this argument as a connection has been suggested between the recent trends of declining ex-vessel prices and the rapid development of salmon farming elsewhere in the world. In Bristol Bay, home of the largest sockeye salmon runs in the globe, participation in the limited-entry fishery has declined by approximately 20% since 2001. Likewise, permit market values have plummeted to historic low levels, with economic conditions not likely to improve significantly in the mid-term future. To examine this problem, we develop a formal analytical framework for the study of market interactions between a limited-entry fishery and an aquaculture sector. We adapt the model of regulated open-access developed by Homans and Wilen to examine the implications of aquaculture development on the actions of fishermen and the regulatory sector in a restricted-access setting. Results indicate that the emergence of a low-cost aquaculture sector brings about important structural changes in the restricted-access fishery, rendering limited-entry regulations irrelevant as participation rates decline due to the falling prices. An important implication is that, despite the limited-entry constraint, the fishery moves to an institutional arrangement closer to regulated open access, with resource rents drastically reduced. Model predictions are compared with the empirical evidence available from the Bristol Bay sockeye fishery. The advantages of cooperative management relative to the current competitive structure of the fishery are highlighted. Close

• 19. [Article] Expansion and Consolidation in The British Columbia Salmon Processing Industry

  Research Paper

  Citation × Citation Citation Abstract Copy Title: Expansion and Consolidation in The British Columbia Salmon Processing Industry Author: Millerd, Frank Research Paper Title: Expansion and Consolidation in The British Columbia Salmon Processing Industry Author: Millerd, Frank Research Paper Close

• 20. [Article] Oregon coastal community water supply assessment

  On the Oregon coast, however, the issue of water supply has become paramount, especially given the need to restore instream flows in order to restore coastal salmon runs and meet water quality standards. ...

  Citation × Citation Citation Abstract Copy Title: Oregon coastal community water supply assessment Author: Achterman, Gail, Rolston, Irene, Davis-Born, Renee, Institute for Natural Resources, Gaines, Lisa On the Oregon coast, however, the issue of water supply has become paramount, especially given the need to restore instream flows in order to restore coastal salmon runs and meet water quality standards. With the ebb and flow of population and the economic growth of Oregon coastal communities, three hypotheses have been generated about the ability of these communities to meet future water supply needs. The purpose of this project was to better understand the challenges and opportunities facing coastal community water suppliers as a whole and to ultimately improve the prospects for meeting future water needs. Findings show that contrary to the first hypothesis, most of those interviewed do not think that economic development is constrained by waters supply. However, it does appear that it would be difficult for state economic development officials to match businesses and industries interested in relocating to the Oregon coast with community water supply availability and reliability. Findings also show that the major problem facing community water suppliers in preparing water management and conservation plans cited by interviewees is financial. Though Oregon’s coastal communities face several planning, management, physical, economic, and regulatory challenges in preparing for future water supply needs, numerous partnership, conservation, and research and training opportunities exist. What is needed is an opportunity for a facilitated process of restructuring water supply systems. Title: Oregon coastal community water supply assessment Author: Achterman, Gail, Rolston, Irene, Davis-Born, Renee, Institute for Natural Resources, Gaines, Lisa On the Oregon coast, however, the issue of water supply has become paramount, especially given the need to restore instream flows in order to restore coastal salmon runs and meet water quality standards. With the ebb and flow of population and the economic growth of Oregon coastal communities, three hypotheses have been generated about the ability of these communities to meet future water supply needs. The purpose of this project was to better understand the challenges and opportunities facing coastal community water suppliers as a whole and to ultimately improve the prospects for meeting future water needs. Findings show that contrary to the first hypothesis, most of those interviewed do not think that economic development is constrained by waters supply. However, it does appear that it would be difficult for state economic development officials to match businesses and industries interested in relocating to the Oregon coast with community water supply availability and reliability. Findings also show that the major problem facing community water suppliers in preparing water management and conservation plans cited by interviewees is financial. Though Oregon’s coastal communities face several planning, management, physical, economic, and regulatory challenges in preparing for future water supply needs, numerous partnership, conservation, and research and training opportunities exist. What is needed is an opportunity for a facilitated process of restructuring water supply systems. Close

• 21. [Article] Oregon Wildlife; Vol.39 No.8 (November-December 1984)

  Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p...

  Citation × Citation Citation Abstract Copy Title: Oregon Wildlife; Vol.39 No.8 (November-December 1984) Author: Oregon. Department of Fish and Wildlife Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p.13 Title: Oregon Wildlife; Vol.39 No.8 (November-December 1984) Author: Oregon. Department of Fish and Wildlife Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p.13 Close

• 22. [Article] Oregon coastal salmon and steelhead tagging programs

  Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum ...

  Citation × Citation Citation Abstract Copy Title: Oregon coastal salmon and steelhead tagging programs Author: Henry, Kenneth A., Morgan, Alfred R. Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum length of time the fish remained in the fishery, population sizes, and fishing mortalities were determined from this study. Part II. To aid in the management of the Siletz River commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1954. General migration behavior, the minimum length of time fish remained in the fishery, population estimates, and fishing mortalities were determined. Title: Oregon coastal salmon and steelhead tagging programs Author: Henry, Kenneth A., Morgan, Alfred R. Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum length of time the fish remained in the fishery, population sizes, and fishing mortalities were determined from this study. Part II. To aid in the management of the Siletz River commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1954. General migration behavior, the minimum length of time fish remained in the fishery, population estimates, and fishing mortalities were determined. Close

• 23. [Article] Geospatial depiction of fall run Chinook Salmon in Wallowa County

  This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary ...

  Citation × Citation Citation Abstract Copy Title: Geospatial depiction of fall run Chinook Salmon in Wallowa County Author: Thomas, Samuel, Department of Fish and Wildlife, State of Oregon, Oregon State University This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Title: Geospatial depiction of fall run Chinook Salmon in Wallowa County Author: Thomas, Samuel, Department of Fish and Wildlife, State of Oregon, Oregon State University This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Close

• 24. [Article] Factors affecting the abundance of fall chinook salmon in the Columbia River

  A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in ...

  Citation × Citation Citation Abstract Copy Title: Factors affecting the abundance of fall chinook salmon in the Columbia River Author: Van Hyning, Jack M. A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in the early 1950's. Fluctuations in abundance of major salmon runs the North Pacific were examined to detect any coastwide pattern. Only chinook salmon in Cook Inlet, Alaska, and chum salmon from Oregon to southwestern Alaska showed a similar trend. The following life history stages broken down into pre- and post-decline years were examined: (1) marine life including distribution and migration, growth and maturity, survival rate, oceanography, and commercial and sport fisheries; (2) upstream migration including river fisheries, gear selectivity, size and age composition of the run, escapement, and influence of dams, diseases, and water quality; (3) reproduction and incubation including spawning areas and spawning and incubation conditions; and (4) downstream migration which included predation, dams and reservoirs, diseases, flow, turbidity and temperature, and estuary life. Salient points of the analysis were: (1) a change in the maturity and survival pattern based on tagged and fin-clipped fish recovered before and after 1950; (2) a significant negative correlation between sea-water temperature during a year class' first year at sea and subsequent survival; (3) a large increase in the ocean fisheries coincident with the decline in the run; (4) catch-effort statistics of the ocean fishery show a near classic example of the effect of overexploitation; (5) estimates of the contribution of Columbia River chinook to the ocean fisheries based on tag recoveries could be underestimates rather than overestimates; (6) a significant inverse correlation between estimated ocean catch of Columbia River fall chinook and numbers entering the river; (7) size and age composition of the ocean and river catches decreased coincident with the decline in the run; (8) the gill-net fishery shows little size selectivity by age, size, or sex in the dominant group; (9) fluctuations in abundance of hatchery stocks are related to differences in survival between fingerling and adult; (10) hatchery, lower river, and upriver populations fluctuate in abundance in much the same pattern; (11) optimum escapement is between 90,000 and 100,000 adults, a value that was exceeded during most years; (12) a highly significant negative correlation between numbers of spawners and return per spawner; (13) most of the early dams had no direct effect on fall chinook and the decline in productivity occurred when river conditions were relatively stable; (14) temperatures at time of migration and spawning for fall chinook have not increased enough to be a serious mortality factor; (15) little relationship between flow, turbidity, and temperature at time of downstream migration and subsequent return was evident except that high temperatures and high flows (and turbidities) tended to produce poorer runs during certain time periods; and (16) predation and delay of smolts in reservoirs are largely unknown factors, but circumstantial evidence suggests that they were not important in regulating fall chinook numbers during the period of the study. Finally, variables that appeared to bear some relationship to fluctuations in abundance of fall chinook were submitted to multiple regression analysis. For the predecline period (1938-46 brood years), sea-water temperature and ocean troll fishing effort were significant variables (R² = 0.74). For post decline years (1947-59 broods), troll had the most influence on total return with ocean temperature and escapement having lesser effects. For the combined years, troll intensity and ocean temperature were the significant variables (R² = 0.572). Entering interaction of river flow at downstream migration with the other variables brought R² to 0.754 which means that 75% of the variability in the returning run could be accounted for by these three factors. Return per spawner was so heavily influenced by numbers of spawners that the other factors assumed negligible importance. Equations were derived that predicted the returning run in close agreement with the actual run size. Substituting a low and constant troll fishing effort in the equation resulted in the predicted run maintaining the average predecline level. The increase in ocean fishing was the main contributor to the decline of the Columbia River fall chinook run as shown by correlation, by analogy, and by the process of elimination. To demonstrate why other chinook runs have not shown similar declines, it was shown that due to several unique features in Columbia River fall chinook life history they are exposed to much more ocean fishing than other populations. It was emphasized that these conclusions should not be extrapolated to the future or to other species or runs of salmon. Title: Factors affecting the abundance of fall chinook salmon in the Columbia River Author: Van Hyning, Jack M. A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in the early 1950's. Fluctuations in abundance of major salmon runs the North Pacific were examined to detect any coastwide pattern. Only chinook salmon in Cook Inlet, Alaska, and chum salmon from Oregon to southwestern Alaska showed a similar trend. The following life history stages broken down into pre- and post-decline years were examined: (1) marine life including distribution and migration, growth and maturity, survival rate, oceanography, and commercial and sport fisheries; (2) upstream migration including river fisheries, gear selectivity, size and age composition of the run, escapement, and influence of dams, diseases, and water quality; (3) reproduction and incubation including spawning areas and spawning and incubation conditions; and (4) downstream migration which included predation, dams and reservoirs, diseases, flow, turbidity and temperature, and estuary life. Salient points of the analysis were: (1) a change in the maturity and survival pattern based on tagged and fin-clipped fish recovered before and after 1950; (2) a significant negative correlation between sea-water temperature during a year class' first year at sea and subsequent survival; (3) a large increase in the ocean fisheries coincident with the decline in the run; (4) catch-effort statistics of the ocean fishery show a near classic example of the effect of overexploitation; (5) estimates of the contribution of Columbia River chinook to the ocean fisheries based on tag recoveries could be underestimates rather than overestimates; (6) a significant inverse correlation between estimated ocean catch of Columbia River fall chinook and numbers entering the river; (7) size and age composition of the ocean and river catches decreased coincident with the decline in the run; (8) the gill-net fishery shows little size selectivity by age, size, or sex in the dominant group; (9) fluctuations in abundance of hatchery stocks are related to differences in survival between fingerling and adult; (10) hatchery, lower river, and upriver populations fluctuate in abundance in much the same pattern; (11) optimum escapement is between 90,000 and 100,000 adults, a value that was exceeded during most years; (12) a highly significant negative correlation between numbers of spawners and return per spawner; (13) most of the early dams had no direct effect on fall chinook and the decline in productivity occurred when river conditions were relatively stable; (14) temperatures at time of migration and spawning for fall chinook have not increased enough to be a serious mortality factor; (15) little relationship between flow, turbidity, and temperature at time of downstream migration and subsequent return was evident except that high temperatures and high flows (and turbidities) tended to produce poorer runs during certain time periods; and (16) predation and delay of smolts in reservoirs are largely unknown factors, but circumstantial evidence suggests that they were not important in regulating fall chinook numbers during the period of the study. Finally, variables that appeared to bear some relationship to fluctuations in abundance of fall chinook were submitted to multiple regression analysis. For the predecline period (1938-46 brood years), sea-water temperature and ocean troll fishing effort were significant variables (R² = 0.74). For post decline years (1947-59 broods), troll had the most influence on total return with ocean temperature and escapement having lesser effects. For the combined years, troll intensity and ocean temperature were the significant variables (R² = 0.572). Entering interaction of river flow at downstream migration with the other variables brought R² to 0.754 which means that 75% of the variability in the returning run could be accounted for by these three factors. Return per spawner was so heavily influenced by numbers of spawners that the other factors assumed negligible importance. Equations were derived that predicted the returning run in close agreement with the actual run size. Substituting a low and constant troll fishing effort in the equation resulted in the predicted run maintaining the average predecline level. The increase in ocean fishing was the main contributor to the decline of the Columbia River fall chinook run as shown by correlation, by analogy, and by the process of elimination. To demonstrate why other chinook runs have not shown similar declines, it was shown that due to several unique features in Columbia River fall chinook life history they are exposed to much more ocean fishing than other populations. It was emphasized that these conclusions should not be extrapolated to the future or to other species or runs of salmon. Close

• 25. [Article] Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & ...

  Citation × Citation Citation Abstract Copy Title: Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California Author: Evans, Allen F., Adrean, Lindsay J., Roby, Daniel D., Lyons, Donald E., Collis, Ken To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & Francis and can be found at: http://www.taylorandfrancis.com. Copyrighted by American Fisheries Society (http://afsjournals.org/). Title: Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California Author: Evans, Allen F., Adrean, Lindsay J., Roby, Daniel D., Lyons, Donald E., Collis, Ken To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & Francis and can be found at: http://www.taylorandfrancis.com. Copyrighted by American Fisheries Society (http://afsjournals.org/). Close

• 26. [Article] Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California

  Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation ...

  Citation × Citation Citation Abstract Copy Title: Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California Author: Adrean, Lindsay J. Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation sites for some Caspian terns from the world's largest colony in the Columbia River estuary of Oregon. Juvenile salmonids have been identified in the diet of Caspian terns nesting at Brooks Island, so I investigated whether the colony, at its current or an enhanced size, poses a threat to the recovery of several runs of salmonids (Oncorhynchus spp.) in San Francisco Bay that are listed under the U.S. Endangered Species Act (ESA). I also examined the foraging ecology of Brooks Island Caspian terns to 1) determine whether the colony is suitable for expansion based on availability of forage fish resources, a factor potentially limiting the size and productivity of the colony, and 2) investigate how Caspian terns nesting at this colony exploit forage fish resources. I used a bioenergetics modeling approach, employing estimates of tern energy requirements and proportions of energy supplied by various prey types, to estimate consumption of juvenile salmonids by Caspian terns nesting on Brooks Island during 2008 and 2009. Estimated salmonid consumption was 205,000 smolts (95% CI: 175,000 – 245,000 smolts) in 2008 and 167,000 smolts (95% CI: 144,000 – 191,000 smolts) in 2009. Predation rates on ESA-listed Central Valley spring-run Chinook salmon (O. tshawytscha; 0.08%) were lower than those on unlisted fall-run Chinook salmon (1.0%). Average per capita predation rates on juvenile salmonids by Brooks Island Caspian terns (2008: 126 fish; 2009: 123 fish) were less than half those of Caspian terns nesting in the Columbia River estuary. If the current downward trend in the number of Caspian terns nesting on Brooks Island continues until the colony is no longer extant, the resulting declines in predation on salmonids would lead to increases in annual population growth rates (Δλ) of salmonid runs of just small fractions of one percentage point. The proposed enhancement of the Brooks Island Caspian tern colony to 3,000 individuals would at most cause declines in annual population growth rates of 0.3% for fall-run Chinook salmon and 0.02% for threatened spring-run Chinook salmon, assuming that smolt mortality from tern predation is 100% additive. This level of impact to the ESA-listed spring-run Chinook salmon stock is less than the level considered acceptable by the National Marine Fisheries Service (Δλ = 0.05%). Radio-tracking of Caspian terns nesting on Brooks Island revealed that the maximum foraging distance from the colony was 80 km. The median foraging distance from the colony was greater in 2009 compared to 2008 (20.6 km vs. 14.0 km), average number of foraging trips per day was higher (4.4 vs. 3.4 foraging trips), and average adult colony attendance was lower (43% vs. 52% of daylight hours). These results indicate that the colony was more food-limited during the 2009 breeding season, concurrent with anomalous downwelling along the coast of northern California and reduced availability and size of marine forage fishes, such as herring, sardines, and anchovies. Caspian terns used a number of core foraging areas within 30 km of the Brooks Island colony, both inside and just outside the Bay. Two large core foraging areas were close to or overlapped with the release site for juvenile salmonids in eastern San Pablo Bay, where > 10 million hatchery-raised smolts were released from net pens during both the 2008 and 2009 tern nesting seasons. This finding supports the hypothesis that most juvenile salmonids consumed by terns nesting at the Brooks Island colony were captured at or near the release site. Individual Caspian terns displayed foraging site fidelity, suggesting that foraging at the release site for hatchery-raised salmonids was a learned behavior by some terns. The Brooks Island colony site is within foraging distance of adequate marine forage fish resources in most years, and Caspian terns nesting there are not dependent on juvenile salmonids as a food resource. Consumption of juvenile salmonids by Brooks Island terns would be largely curtailed by modification of hatchery release practices. Title: Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California Author: Adrean, Lindsay J. Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation sites for some Caspian terns from the world's largest colony in the Columbia River estuary of Oregon. Juvenile salmonids have been identified in the diet of Caspian terns nesting at Brooks Island, so I investigated whether the colony, at its current or an enhanced size, poses a threat to the recovery of several runs of salmonids (Oncorhynchus spp.) in San Francisco Bay that are listed under the U.S. Endangered Species Act (ESA). I also examined the foraging ecology of Brooks Island Caspian terns to 1) determine whether the colony is suitable for expansion based on availability of forage fish resources, a factor potentially limiting the size and productivity of the colony, and 2) investigate how Caspian terns nesting at this colony exploit forage fish resources. I used a bioenergetics modeling approach, employing estimates of tern energy requirements and proportions of energy supplied by various prey types, to estimate consumption of juvenile salmonids by Caspian terns nesting on Brooks Island during 2008 and 2009. Estimated salmonid consumption was 205,000 smolts (95% CI: 175,000 – 245,000 smolts) in 2008 and 167,000 smolts (95% CI: 144,000 – 191,000 smolts) in 2009. Predation rates on ESA-listed Central Valley spring-run Chinook salmon (O. tshawytscha; 0.08%) were lower than those on unlisted fall-run Chinook salmon (1.0%). Average per capita predation rates on juvenile salmonids by Brooks Island Caspian terns (2008: 126 fish; 2009: 123 fish) were less than half those of Caspian terns nesting in the Columbia River estuary. If the current downward trend in the number of Caspian terns nesting on Brooks Island continues until the colony is no longer extant, the resulting declines in predation on salmonids would lead to increases in annual population growth rates (Δλ) of salmonid runs of just small fractions of one percentage point. The proposed enhancement of the Brooks Island Caspian tern colony to 3,000 individuals would at most cause declines in annual population growth rates of 0.3% for fall-run Chinook salmon and 0.02% for threatened spring-run Chinook salmon, assuming that smolt mortality from tern predation is 100% additive. This level of impact to the ESA-listed spring-run Chinook salmon stock is less than the level considered acceptable by the National Marine Fisheries Service (Δλ = 0.05%). Radio-tracking of Caspian terns nesting on Brooks Island revealed that the maximum foraging distance from the colony was 80 km. The median foraging distance from the colony was greater in 2009 compared to 2008 (20.6 km vs. 14.0 km), average number of foraging trips per day was higher (4.4 vs. 3.4 foraging trips), and average adult colony attendance was lower (43% vs. 52% of daylight hours). These results indicate that the colony was more food-limited during the 2009 breeding season, concurrent with anomalous downwelling along the coast of northern California and reduced availability and size of marine forage fishes, such as herring, sardines, and anchovies. Caspian terns used a number of core foraging areas within 30 km of the Brooks Island colony, both inside and just outside the Bay. Two large core foraging areas were close to or overlapped with the release site for juvenile salmonids in eastern San Pablo Bay, where > 10 million hatchery-raised smolts were released from net pens during both the 2008 and 2009 tern nesting seasons. This finding supports the hypothesis that most juvenile salmonids consumed by terns nesting at the Brooks Island colony were captured at or near the release site. Individual Caspian terns displayed foraging site fidelity, suggesting that foraging at the release site for hatchery-raised salmonids was a learned behavior by some terns. The Brooks Island colony site is within foraging distance of adequate marine forage fish resources in most years, and Caspian terns nesting there are not dependent on juvenile salmonids as a food resource. Consumption of juvenile salmonids by Brooks Island terns would be largely curtailed by modification of hatchery release practices. Close

• 27. [Article] Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery

  The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information ...

  Citation × Citation Citation Abstract Copy Title: Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery Author: Lin, Pei-Chien The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information to evaluate the effects of alternative policies on the benefits provided to different constituencies. Over the past decade, economists have developed techniques to measure the benefits provided by such nonmarket goods. The random utility model (RUM), a variant of the travel cost model (TCM), is one of the techniques developed by economists to measure benefits associated with changes in the quantity or quality of nonmarket goods. The advantages of using RUN over other techniques are that the substitution effects among different sites providing similar recreational activities or services can be incorporated into the model to avoid overestimating the benefits provided by a certain site. Redacted for Privacy RUM is used in this thesis to measure the welfare changes caused by a reduction in fishing quality or closure of one of the sites in a recreational fishing area. The focus of this study is the spring chinook recreational fishery in the lower Willamette River. The 1988 Willamette Run Spring Chinook Survey and the 1988 Willamette River Spring Chinook Salmon Run Report, published by the Oregon Department of Fish and Wildlife, provide the data set to do this research. Three definitions of travel costs, TC1, TC2, and TC3 are derived from the data set and used alternatively in the RUM framework. Specific objectives of this thesis include: (1) estimate how the attributes of a site (travel cost, congestion level and fishing quality of the site) will affect the individual's site choice; and (2) estimate the welfare changes arising from the two hypothetical policies which change the quality of fishing experience and which restrict the access of anglers to a certain fishing site. The results indicate that fishing sites on the Willamette River are more attractive to anglers if the fishing quality is increased, if more people visit, and if the site is relatively inexpensive to reach. The results of the elasticities of probabilities show that the travel cost has the largest effect on individual site choice decision. For different definitions of travel costs, the estimated welfare losses caused by the first hypothetical policy (of a reduction in fishing. success) for a representative angler in the sample are $ 0.37, $ 0.91, and $ 0.47 respectively, per trip. For different definitions of travel costs, the aggregate welfare losses associated with this hypothetical policy are $ 82,309, $ 202,436, and $ 104,555. For different definitions of travel costs, the estimated welfare losses caused by the second hypothetical policy (a closure of one site) for a representative angler in the sample are $ 3.82, $ 54.91, and $ 4.83 per trip respectively. The aggregate welfare losses associated with this hypothetical policy are $ 849,786, $ 12,215,114, and $ 1,074,467 respectively for TC1, TC2, and TC3. Assuming that these two policies achieved the same objectives, the policy implication of these results is that the first policy is preferred because the welfare loss is much smaller than the second one. There is a methodological implication suggested by one of the findings. A few of the individual results obtained from the model with TC2 travel cost violate the assumption of utility maximization. This implies that TC2 may over-value the opportunity cost of time in the travel cost variable, and points out the uncertain of the definition of travel cost used in RUM analyses. Title: Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery Author: Lin, Pei-Chien The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information to evaluate the effects of alternative policies on the benefits provided to different constituencies. Over the past decade, economists have developed techniques to measure the benefits provided by such nonmarket goods. The random utility model (RUM), a variant of the travel cost model (TCM), is one of the techniques developed by economists to measure benefits associated with changes in the quantity or quality of nonmarket goods. The advantages of using RUN over other techniques are that the substitution effects among different sites providing similar recreational activities or services can be incorporated into the model to avoid overestimating the benefits provided by a certain site. Redacted for Privacy RUM is used in this thesis to measure the welfare changes caused by a reduction in fishing quality or closure of one of the sites in a recreational fishing area. The focus of this study is the spring chinook recreational fishery in the lower Willamette River. The 1988 Willamette Run Spring Chinook Survey and the 1988 Willamette River Spring Chinook Salmon Run Report, published by the Oregon Department of Fish and Wildlife, provide the data set to do this research. Three definitions of travel costs, TC1, TC2, and TC3 are derived from the data set and used alternatively in the RUM framework. Specific objectives of this thesis include: (1) estimate how the attributes of a site (travel cost, congestion level and fishing quality of the site) will affect the individual's site choice; and (2) estimate the welfare changes arising from the two hypothetical policies which change the quality of fishing experience and which restrict the access of anglers to a certain fishing site. The results indicate that fishing sites on the Willamette River are more attractive to anglers if the fishing quality is increased, if more people visit, and if the site is relatively inexpensive to reach. The results of the elasticities of probabilities show that the travel cost has the largest effect on individual site choice decision. For different definitions of travel costs, the estimated welfare losses caused by the first hypothetical policy (of a reduction in fishing. success) for a representative angler in the sample are $ 0.37, $ 0.91, and $ 0.47 respectively, per trip. For different definitions of travel costs, the aggregate welfare losses associated with this hypothetical policy are $ 82,309, $ 202,436, and $ 104,555. For different definitions of travel costs, the estimated welfare losses caused by the second hypothetical policy (a closure of one site) for a representative angler in the sample are $ 3.82, $ 54.91, and $ 4.83 per trip respectively. The aggregate welfare losses associated with this hypothetical policy are $ 849,786, $ 12,215,114, and $ 1,074,467 respectively for TC1, TC2, and TC3. Assuming that these two policies achieved the same objectives, the policy implication of these results is that the first policy is preferred because the welfare loss is much smaller than the second one. There is a methodological implication suggested by one of the findings. A few of the individual results obtained from the model with TC2 travel cost violate the assumption of utility maximization. This implies that TC2 may over-value the opportunity cost of time in the travel cost variable, and points out the uncertain of the definition of travel cost used in RUM analyses. Close

• 28. [Article] Non-regulatory efforts to combat nonpoint source pollution in Oregon

  This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development ...

  Citation × Citation Citation Abstract Copy Title: Non-regulatory efforts to combat nonpoint source pollution in Oregon Author: Lindberg, Roberta J. This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development of Oregon's new federally mandated Coastal Nonpoint Pollution Control Program (CNPCP). When Congress reauthorized the Coastal Zone Management Act in 1990, it added significant new responsibilities for coastal states regarding water pollution from diffuse, widespread sources that in the past have not been regulated. Section 6217 of the Coastal Zone Act Reauthorization Amendments (CZARA) requires states to adopt enforceable programs to address nonpoint source pollution arising from agriculture, forestry, urban runoff, recreational boating and marinas, channelization, dams and eroding stream banks. "Nonpoint source pollution" in this context includes any discharge to the state's waters which is not regulated by the Clean Water Act's permit system, the National Pollutant Discharge Elimination System (NPDES). When Congress mandated the coastal nonpoint source program, it directed that states' coastal programs and water quality agencies work together in developing and implementing the program. In Oregon, the Department of Land Conservation and Development (DLCD) and the Department of Environmental Quality (DEQ) are jointly responsible for the development of the coastal nonpoint control program. DLCD's Coastal Management Program implements provisions of the federal Coastal Zone Management Act. DEQ's Water Quality Division manages the statewide nonpoint source control program pursuant to Section 319 of the Clean Water Act (CWA). Staff at DLCD's Coastal Management Program prepared an extensive report and analysis of Oregon's current array of enforceable programs and the extent to which those programs satisfy the federal requirements for the new coastal program. Gaps in program coverage were identified, and efforts to fill those gaps are currently in progress. This report is a companion to the DLCD gap analysis. However, instead of focusing on enforceable programs, this report highlights nonpoint source control and watershed management programs that rely on voluntary efforts to achieve their goals. Staff at DEQ have identified nine types of activities which, together with enforcement, make constitute an effective watershed management program. This report presents an inventory of the state and federal government efforts currently underway within the state of Oregon which contribute to the control of nonpoint source pollution but do not rely on a regulatory program to do so. This is a time of extensive reevaluation and reordering of natural resource priorities and strategies at both the state and federal levels. The Clinton Forest Summit and the Forest Ecosystem Management Assessment Team (FEMAT) process have been examining federal forest policy from top to bottom. The two major federal land management agencies, the Forest Service and the Bureau of Land Management, began reviewing their policies and practices well before the Forest Summit, and have made significant changes as a result. At the state level, the Watershed Health Initiative directed $10 million to two regions of the state during the 1993-95 biennium, in an unprecedented effort to restore salmon habitat and improve water quality. The impetus for change comes from the visible results of past natural resource management practices: the collapse of many native salmon runs and the decline in many other species leading to a great expansion of activity under the federal Endangered Species Act. The federal court logging injunction to protect the Northern Spotted Owl triggered much activity at the state and local levels in an effort to avoid further listings and the potential economic dislocations associated with them. Title: Non-regulatory efforts to combat nonpoint source pollution in Oregon Author: Lindberg, Roberta J. This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development of Oregon's new federally mandated Coastal Nonpoint Pollution Control Program (CNPCP). When Congress reauthorized the Coastal Zone Management Act in 1990, it added significant new responsibilities for coastal states regarding water pollution from diffuse, widespread sources that in the past have not been regulated. Section 6217 of the Coastal Zone Act Reauthorization Amendments (CZARA) requires states to adopt enforceable programs to address nonpoint source pollution arising from agriculture, forestry, urban runoff, recreational boating and marinas, channelization, dams and eroding stream banks. "Nonpoint source pollution" in this context includes any discharge to the state's waters which is not regulated by the Clean Water Act's permit system, the National Pollutant Discharge Elimination System (NPDES). When Congress mandated the coastal nonpoint source program, it directed that states' coastal programs and water quality agencies work together in developing and implementing the program. In Oregon, the Department of Land Conservation and Development (DLCD) and the Department of Environmental Quality (DEQ) are jointly responsible for the development of the coastal nonpoint control program. DLCD's Coastal Management Program implements provisions of the federal Coastal Zone Management Act. DEQ's Water Quality Division manages the statewide nonpoint source control program pursuant to Section 319 of the Clean Water Act (CWA). Staff at DLCD's Coastal Management Program prepared an extensive report and analysis of Oregon's current array of enforceable programs and the extent to which those programs satisfy the federal requirements for the new coastal program. Gaps in program coverage were identified, and efforts to fill those gaps are currently in progress. This report is a companion to the DLCD gap analysis. However, instead of focusing on enforceable programs, this report highlights nonpoint source control and watershed management programs that rely on voluntary efforts to achieve their goals. Staff at DEQ have identified nine types of activities which, together with enforcement, make constitute an effective watershed management program. This report presents an inventory of the state and federal government efforts currently underway within the state of Oregon which contribute to the control of nonpoint source pollution but do not rely on a regulatory program to do so. This is a time of extensive reevaluation and reordering of natural resource priorities and strategies at both the state and federal levels. The Clinton Forest Summit and the Forest Ecosystem Management Assessment Team (FEMAT) process have been examining federal forest policy from top to bottom. The two major federal land management agencies, the Forest Service and the Bureau of Land Management, began reviewing their policies and practices well before the Forest Summit, and have made significant changes as a result. At the state level, the Watershed Health Initiative directed $10 million to two regions of the state during the 1993-95 biennium, in an unprecedented effort to restore salmon habitat and improve water quality. The impetus for change comes from the visible results of past natural resource management practices: the collapse of many native salmon runs and the decline in many other species leading to a great expansion of activity under the federal Endangered Species Act. The federal court logging injunction to protect the Northern Spotted Owl triggered much activity at the state and local levels in an effort to avoid further listings and the potential economic dislocations associated with them. Close

• 29. [Article] Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon

  In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking ...

  Citation × Citation Citation Abstract Copy Title: Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon Author: Courter, Ian I. In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking from hatcheries over the past hundred years is often suggested to be a major cause. The listing of over two dozen runs of salmon under the Endangered Species Act has catalyzed a re-assessment of hatchery effects on naturally spawning salmon. Recent policies have placed a much greater emphasis on restoring runs of wild salmon rather than maintaining runs through stocking from hatchery production. Except at the most superficial level, there is no consensus about how to define "wild." Rather, there is a continuum of definitions for "wild" and each definition supports an implicit policy goal. The precise way in which "wild salmon" is defined potentially has profound policy implications. Ultimately, the choice of definition is a policy decision that incorporates science as one of several factors influencing the decision. A suite of options, often poorly articulated, for defining "wild" are available to policy makers who are selecting recovery goals. To test a subset of the available definitions of wild, I quantified the number of hatchery and naturally spawning salmon for 19 populations of Oregon coastal coho. "Wild" was defined by types 1 through 5 based on the number of hatchery fish released annually and the number of naturally spawning hatchery adults. As currently managed by the Oregon Department of Fish and Wildlife, the Oregon coast has a range of "types" of coho salmon. By clearly and explicitly defining "wild" as steps along a continuum, policy makers and managers can more effectively monitor and achieve specific salmon recovery goals. Title: Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon Author: Courter, Ian I. In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking from hatcheries over the past hundred years is often suggested to be a major cause. The listing of over two dozen runs of salmon under the Endangered Species Act has catalyzed a re-assessment of hatchery effects on naturally spawning salmon. Recent policies have placed a much greater emphasis on restoring runs of wild salmon rather than maintaining runs through stocking from hatchery production. Except at the most superficial level, there is no consensus about how to define "wild." Rather, there is a continuum of definitions for "wild" and each definition supports an implicit policy goal. The precise way in which "wild salmon" is defined potentially has profound policy implications. Ultimately, the choice of definition is a policy decision that incorporates science as one of several factors influencing the decision. A suite of options, often poorly articulated, for defining "wild" are available to policy makers who are selecting recovery goals. To test a subset of the available definitions of wild, I quantified the number of hatchery and naturally spawning salmon for 19 populations of Oregon coastal coho. "Wild" was defined by types 1 through 5 based on the number of hatchery fish released annually and the number of naturally spawning hatchery adults. As currently managed by the Oregon Department of Fish and Wildlife, the Oregon coast has a range of "types" of coho salmon. By clearly and explicitly defining "wild" as steps along a continuum, policy makers and managers can more effectively monitor and achieve specific salmon recovery goals. Close

• 30. [Article] Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression

  Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been ...

  Citation × Citation Citation Abstract Copy Title: Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression Author: Banks, Michael A., McArthur, Andrew G., Birkeland, Shanda R., Bernier, Jeremiah C., Cipriano, Michael J. Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been well described. Current methods, such as long serial analysis of gene expression (LongSAGE) and microarrays, allow gene expression to be analyzed for thousands of genes simultaneously. To investigate whether differential gene expression is observed between fall- and spring-run Chinook salmon from California's Central Valley, LongSAGE libraries were constructed. Three libraries containing between 25,512 and 29,372 sequenced tags (21 base pairs/tag) were generated using messenger RNA from the brains of adult Chinook salmon returning in fall and spring and from one ocean-caught Chinook salmon. Tags were annotated to genes using complementary DNA libraries from Atlantic salmon Salmo salar and rainbow trout O. mykiss. Differentially expressed genes, as estimated by differences in the number of sequence tags, were found in all pairwise comparisons of libraries (freshwater versus saltwater = 40 genes; fall versus spring = 11 genes; and spawning versus nonspawning = 51 genes). The gene for ependymin, an extracellular glycoprotein involved in behavioral plasticity in fish, exhibited the most differential expression among the three groupings. Reverse transcription polymerase chain reaction analysis verified the differential expression of ependymin between the fall- and spring-run samples. These LongSAGE libraries, the first reported for Chinook salmon, provide a window of the transcriptional changes during Chinook salmon return migration to freshwater and spawning and increase the amount of expressed sequence data. Title: Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression Author: Banks, Michael A., McArthur, Andrew G., Birkeland, Shanda R., Bernier, Jeremiah C., Cipriano, Michael J. Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been well described. Current methods, such as long serial analysis of gene expression (LongSAGE) and microarrays, allow gene expression to be analyzed for thousands of genes simultaneously. To investigate whether differential gene expression is observed between fall- and spring-run Chinook salmon from California's Central Valley, LongSAGE libraries were constructed. Three libraries containing between 25,512 and 29,372 sequenced tags (21 base pairs/tag) were generated using messenger RNA from the brains of adult Chinook salmon returning in fall and spring and from one ocean-caught Chinook salmon. Tags were annotated to genes using complementary DNA libraries from Atlantic salmon Salmo salar and rainbow trout O. mykiss. Differentially expressed genes, as estimated by differences in the number of sequence tags, were found in all pairwise comparisons of libraries (freshwater versus saltwater = 40 genes; fall versus spring = 11 genes; and spawning versus nonspawning = 51 genes). The gene for ependymin, an extracellular glycoprotein involved in behavioral plasticity in fish, exhibited the most differential expression among the three groupings. Reverse transcription polymerase chain reaction analysis verified the differential expression of ependymin between the fall- and spring-run samples. These LongSAGE libraries, the first reported for Chinook salmon, provide a window of the transcriptional changes during Chinook salmon return migration to freshwater and spawning and increase the amount of expressed sequence data. Close

• 31. [Article] Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction

  Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular ...

  Citation × Citation Citation Abstract Copy Title: Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction Author: Shaklee, James B., Bentzen, Paul, Olsen, Jeffrey B., Young, Sewall, Banks, Michael A. Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular concern in supportive breeding programs, in which misidentification of individuals to population may result in progeny of mixed heritage, which, in turn, results in the erosion of the genetic population structure and of the existing genetic diversity and local adaptations of the target population. We evaluated two classes of genetic markers, allozymes and microsatellites, for estimating population identity of pink salmon Oncorhynchus gorbuscha in a supportive breeding program on the Dungeness River in Washington State. Fall-run pink salmon of the Dungeness River are the target of restoration, but they presumably overlap, in terms of timing, with an earlier summer run. Both marker types revealed similarly low estimates of relative genetic differentiation ( <(theta)over cap> = 0.02), which suggests that there is little variation in allele frequency among populations. However, microsatellites provided a more accurate estimate of population identity. When applying a log-likelihood ratio criterion of greater than 1.3, 74.8% of individuals were correctly assigned to population using microsatellites (versus 3.1% of individuals using allozymes). The difference in assignment accuracy was best predicted by the statistic <(delta)over cap>, which estimates cumulative allele frequency differences among populations. Our results suggest that genetic markers with many alleles are preferred when populations exhibit little genetic differentiation (as is the case in pink salmon), because <(delta)over cap> is more likely to be large, presumably as a result of genetic drift at each allele. The use of microsatellites to select fall-run pink salmon for supportive breeding confirmed the run-timing overlap and prevented unintentional crosses between the two populations. Title: Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction Author: Shaklee, James B., Bentzen, Paul, Olsen, Jeffrey B., Young, Sewall, Banks, Michael A. Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular concern in supportive breeding programs, in which misidentification of individuals to population may result in progeny of mixed heritage, which, in turn, results in the erosion of the genetic population structure and of the existing genetic diversity and local adaptations of the target population. We evaluated two classes of genetic markers, allozymes and microsatellites, for estimating population identity of pink salmon Oncorhynchus gorbuscha in a supportive breeding program on the Dungeness River in Washington State. Fall-run pink salmon of the Dungeness River are the target of restoration, but they presumably overlap, in terms of timing, with an earlier summer run. Both marker types revealed similarly low estimates of relative genetic differentiation ( <(theta)over cap> = 0.02), which suggests that there is little variation in allele frequency among populations. However, microsatellites provided a more accurate estimate of population identity. When applying a log-likelihood ratio criterion of greater than 1.3, 74.8% of individuals were correctly assigned to population using microsatellites (versus 3.1% of individuals using allozymes). The difference in assignment accuracy was best predicted by the statistic <(delta)over cap>, which estimates cumulative allele frequency differences among populations. Our results suggest that genetic markers with many alleles are preferred when populations exhibit little genetic differentiation (as is the case in pink salmon), because <(delta)over cap> is more likely to be large, presumably as a result of genetic drift at each allele. The use of microsatellites to select fall-run pink salmon for supportive breeding confirmed the run-timing overlap and prevented unintentional crosses between the two populations. Close

• 32. [Article] Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries ...

  Citation × Citation Citation Abstract Copy Title: Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option Author: Bartholomew, J. L., Fogerty, R., True, K., Buckles, G. R., Alexander, J. D., Foott, J. S., Hallett, S. L., Bolick, A., Stone, R. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/uahh20/current Title: Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option Author: Bartholomew, J. L., Fogerty, R., True, K., Buckles, G. R., Alexander, J. D., Foott, J. S., Hallett, S. L., Bolick, A., Stone, R. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/uahh20/current Close

• 33. [Article] Some factors influencing the trends of salmon populations in Oregon

  Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. ...

  Citation × Citation Citation Abstract Copy Title: Some factors influencing the trends of salmon populations in Oregon Author: Johnson, Donald R., Oregon. Fish Commission, Hodges, John I., McKernan, Donald L. (Donald Lynn), 1918-1979 Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. Exceptional winter floods seem to produce poor resulting runs. Low summer water flows also appear to produce lower than average runs on some rivers, while higher summer flows appear to be followed by an increase in the resultant runs. The intensity of fishing was also found to affect the subsequent productivity of the fisheries. Increases in fishing effort on the rivers studied were followed in succeeding cycles by a lower catch, and when the fishing effort declined the ensuing production of silver salmon generally increased. Other factors studied did not bear a significant relationship to the fluctuations or trends of productivity of silver salmon. Title: Some factors influencing the trends of salmon populations in Oregon Author: Johnson, Donald R., Oregon. Fish Commission, Hodges, John I., McKernan, Donald L. (Donald Lynn), 1918-1979 Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. Exceptional winter floods seem to produce poor resulting runs. Low summer water flows also appear to produce lower than average runs on some rivers, while higher summer flows appear to be followed by an increase in the resultant runs. The intensity of fishing was also found to affect the subsequent productivity of the fisheries. Increases in fishing effort on the rivers studied were followed in succeeding cycles by a lower catch, and when the fishing effort declined the ensuing production of silver salmon generally increased. Other factors studied did not bear a significant relationship to the fluctuations or trends of productivity of silver salmon. Close

• 34. [Article] The Effect of Temperature on the Survival of Chinook Eggs and Fry

  Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature ...

  Citation × Citation Citation Abstract Copy Title: The Effect of Temperature on the Survival of Chinook Eggs and Fry Author: Teose, Maarika Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature regimes a®ect the growth and survival of threatened spring- run Chinook salmon. An ARIMA time-series model was used to approximate each temperature record and a MATLAB program was written to simulate the growth of an individual Chinook salmon from egg to fry. Given a spawning distribution, the model was used to grow several hundred ¯sh in each temperature regime for a given period of time, and the distributions of ¯sh weights were recorded in histograms. The distributions of ¯sh weights above and below the dam were signi¯cantly di®erent (p < 0:001) and the temperature regime above the dam produced larger ¯sh than the temperature regime below the dam (p < 0:001). We conclude that the temperature regime below the dam (prior to the construction of the temperature control structure) is less conducive to the survival of Chinook than the temperature regime above. Title: The Effect of Temperature on the Survival of Chinook Eggs and Fry Author: Teose, Maarika Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature regimes a®ect the growth and survival of threatened spring- run Chinook salmon. An ARIMA time-series model was used to approximate each temperature record and a MATLAB program was written to simulate the growth of an individual Chinook salmon from egg to fry. Given a spawning distribution, the model was used to grow several hundred ¯sh in each temperature regime for a given period of time, and the distributions of ¯sh weights were recorded in histograms. The distributions of ¯sh weights above and below the dam were signi¯cantly di®erent (p < 0:001) and the temperature regime above the dam produced larger ¯sh than the temperature regime below the dam (p < 0:001). We conclude that the temperature regime below the dam (prior to the construction of the temperature control structure) is less conducive to the survival of Chinook than the temperature regime above. Close

• 35. [Article] Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska

  Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. ...

  Citation × Citation Citation Abstract Copy Title: Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska Author: Adams, Noah Swayambhu Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. The study populations consisted of early- and late-run chinook salmon in each of the Kenai and Kasilof rivers in Alaska, and a single population from the Minam River, Oregon, that provided a relative scale for the differences among the Alaskan populations. Two segments of mtDNA were amplified separately using the polymerase chain reaction (PCR) and then digested with 14 to 16 restriction enzymes. Results showed that the two early runs were genetically similar to each other but different from either of the late runs. The late runs were different from each other based on the frequency of the common haplotypes. The Minam River stock shared two haplotypes with the Alaskan stocks and displayed one unique haplotype. The frequency difference in the shared haplotypes together with the presence of a unique haplotype allowed us to separate the Oregon population from those in Alaska. In the protein analysis, each of the five populations was examined at 30 allozyme loci to determine variation within and between the runs. Based on 14 polymorphic loci, Minam River chinook salmon were genetically distinct from the Alaskan populations. Within the Alaskan populations, the two early runs were most similar to each other but different from the two late runs; the two late runs were also genetically most similar to each other. Based on all loci, protein electrophoresis proved to be a useful technique to separate stocks of chinook salmon. On a locus by locus basis, however, mtDNA was more powerful. Both mtDNA and allozyme analysis suggest that chinook salmon may segregate into genetically different early and late forms within a drainage. Title: Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska Author: Adams, Noah Swayambhu Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. The study populations consisted of early- and late-run chinook salmon in each of the Kenai and Kasilof rivers in Alaska, and a single population from the Minam River, Oregon, that provided a relative scale for the differences among the Alaskan populations. Two segments of mtDNA were amplified separately using the polymerase chain reaction (PCR) and then digested with 14 to 16 restriction enzymes. Results showed that the two early runs were genetically similar to each other but different from either of the late runs. The late runs were different from each other based on the frequency of the common haplotypes. The Minam River stock shared two haplotypes with the Alaskan stocks and displayed one unique haplotype. The frequency difference in the shared haplotypes together with the presence of a unique haplotype allowed us to separate the Oregon population from those in Alaska. In the protein analysis, each of the five populations was examined at 30 allozyme loci to determine variation within and between the runs. Based on 14 polymorphic loci, Minam River chinook salmon were genetically distinct from the Alaskan populations. Within the Alaskan populations, the two early runs were most similar to each other but different from the two late runs; the two late runs were also genetically most similar to each other. Based on all loci, protein electrophoresis proved to be a useful technique to separate stocks of chinook salmon. On a locus by locus basis, however, mtDNA was more powerful. Both mtDNA and allozyme analysis suggest that chinook salmon may segregate into genetically different early and late forms within a drainage. Close

• 36. [Article] Conflicts in the multiple use of Wallowa Lake

  The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians ...

  Citation × Citation Citation Abstract Copy Title: Conflicts in the multiple use of Wallowa Lake Author: Craig, Kenneth Mackenzie The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians but the advent of irrigation in the area by the early settlers eliminated the blueback salmon (oncorhynchus nerka) run that spawned in the lake. This was caused by the establishment of unscreened irrigation ditches in the Wallowa River below the lake and the construction of a concrete dam in the outlet of the lake by the Associated Ditch Companies. The dam raised the natural level of the lake 28.4 feet, creating an irrigation reservoir. The use of this water for irrigation purposes has caused considerable erosion along the steep banks of the east and west moraines, reducing the desirability of the beaches and hampering the use of boating facilities. The Pacific Power and Light Company used a considerable amount of water from the lake for their generating plant in Joseph from 1929 to 1956. This limited the number of times the lake was filled to capacity, lessening the amount of sloughing of the relatively undeveloped shoreline property around the lake since the greatest damage occurred when the lake was full. After 1950, many more people purchased lots and built cabins on the west moraine and became increasingly aware of the erosion of their property. The erosion problem increased sharply after the Joseph power plant was abandoned in 1956, enabling the Associated Ditch Companies to fill the reservoir to capacity nearly every year since that time. Increased dissatisfaction by the cabin owners with the management practices of the Associated Ditch Companies resulted in a lawsuit in which the ditch companies were found guilty of trespass of private property by exceeding their storage rights. Although the fine in this instance was negligible, future confrontations appear to be inevitable due to the increasing influence of recreationists in an area once considered the exclusive domain of agriculture and power interests. Future cooperation between these conflicting interests is vital in order to realize the full potential of the multiple uses of the lake. Title: Conflicts in the multiple use of Wallowa Lake Author: Craig, Kenneth Mackenzie The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians but the advent of irrigation in the area by the early settlers eliminated the blueback salmon (oncorhynchus nerka) run that spawned in the lake. This was caused by the establishment of unscreened irrigation ditches in the Wallowa River below the lake and the construction of a concrete dam in the outlet of the lake by the Associated Ditch Companies. The dam raised the natural level of the lake 28.4 feet, creating an irrigation reservoir. The use of this water for irrigation purposes has caused considerable erosion along the steep banks of the east and west moraines, reducing the desirability of the beaches and hampering the use of boating facilities. The Pacific Power and Light Company used a considerable amount of water from the lake for their generating plant in Joseph from 1929 to 1956. This limited the number of times the lake was filled to capacity, lessening the amount of sloughing of the relatively undeveloped shoreline property around the lake since the greatest damage occurred when the lake was full. After 1950, many more people purchased lots and built cabins on the west moraine and became increasingly aware of the erosion of their property. The erosion problem increased sharply after the Joseph power plant was abandoned in 1956, enabling the Associated Ditch Companies to fill the reservoir to capacity nearly every year since that time. Increased dissatisfaction by the cabin owners with the management practices of the Associated Ditch Companies resulted in a lawsuit in which the ditch companies were found guilty of trespass of private property by exceeding their storage rights. Although the fine in this instance was negligible, future confrontations appear to be inevitable due to the increasing influence of recreationists in an area once considered the exclusive domain of agriculture and power interests. Future cooperation between these conflicting interests is vital in order to realize the full potential of the multiple uses of the lake. Close

• 37. [Article] The Umpqua River study : a joint report

  The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass ...

  Citation × Citation Citation Abstract Copy Title: The Umpqua River study : a joint report Author: Oregon. State Game Commission, Oregon. Fish Commission The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass and sturgeon. The winter steelhead, striped bass, and shad runs appear to be maintaining themselves. The runs of the other species appear to be in various stages of depletion. Major factors which have contributed to this depletion are: overfishing by the commercial fishery and more recently the sport fishery; and barriers such as log jams, "splash" damns, mill dam and hydroelectric developments. Other factors which may be of importance are: predation; unscreened gravity water diversions; water removal by pumping for irrigation, industrial, and municipal use; and fluctuations in water levels due to meterological conditions. The total run of spring chinook salmon into the Umpqua River in 1946 was estimated to be 4,400 fish of which approximately 935 were jacks. (fish under 20 inches). The fishing mortality of shad of commercial size, in the 1946 Umpqua River run, was estimated to be 50 percent. The total catch of the various species of salmon by the commercial and sport fisheries in 1946 were as follows: Under a proper management program, an average sustained yield of several times in the 1946 catches may be expected. During 1946, anglers spent at least $292,700 in this area while fishing for salmon and trout in the Umpqua River. The capital investment was estimated to be $2,402,500. The commercial fishery products of salmon steelhead, shad, striped bass, pilchards, and crabs taken from the Umpqua River in 1946 had a wholesale valur of $652,400. The capital investment was not determined. Title: The Umpqua River study : a joint report Author: Oregon. State Game Commission, Oregon. Fish Commission The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass and sturgeon. The winter steelhead, striped bass, and shad runs appear to be maintaining themselves. The runs of the other species appear to be in various stages of depletion. Major factors which have contributed to this depletion are: overfishing by the commercial fishery and more recently the sport fishery; and barriers such as log jams, "splash" damns, mill dam and hydroelectric developments. Other factors which may be of importance are: predation; unscreened gravity water diversions; water removal by pumping for irrigation, industrial, and municipal use; and fluctuations in water levels due to meterological conditions. The total run of spring chinook salmon into the Umpqua River in 1946 was estimated to be 4,400 fish of which approximately 935 were jacks. (fish under 20 inches). The fishing mortality of shad of commercial size, in the 1946 Umpqua River run, was estimated to be 50 percent. The total catch of the various species of salmon by the commercial and sport fisheries in 1946 were as follows: Under a proper management program, an average sustained yield of several times in the 1946 catches may be expected. During 1946, anglers spent at least $292,700 in this area while fishing for salmon and trout in the Umpqua River. The capital investment was estimated to be $2,402,500. The commercial fishery products of salmon steelhead, shad, striped bass, pilchards, and crabs taken from the Umpqua River in 1946 had a wholesale valur of $652,400. The capital investment was not determined. Close

• 38. [Article] Proposed regional general permit for stream restoration : programmatic biological opinion

  On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation ...

  Citation × Citation Citation Abstract Copy Title: Proposed regional general permit for stream restoration : programmatic biological opinion On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation for programmatic coverage for a proposed Regional General Permit (RGP) for certain stream restoration activities (habitat restoration using large wood or boulders throughout the State of Oregon) requiring COE approval. The Biological Assessment (BA) provided with the request determined that the proposed activities covered under the RGP would be likely to adversely affect anadromous fish species listed under the ESA (Table 1). Species considered in this Biological Opinion (Opinion) are: Snake River sockeye salmon (Oncorhynchus nerka); Snake River spring /summer chinook salmon (O. tshawytscha); Snake River fall chinook salmon (O. tshawytscha); Lower Columbia River steelhead (O. mykiss); Upper Columbia River steelhead (O. mykiss); Snake River steelhead (O. mykiss); Upper Willamette River steelhead (O. mykiss); Middle Columbia River steelhead (O. mykiss); Columbia River chum salmon (O. keta); Lower Columbia River chinook salmon (O. tshawytscha); Upper Willamette River chinook salmon (O. tshawytscha); Upper Columbia River spring run chinook salmon (O. tshawytscha); S. Oregon/N. California Coast coho salmon (O. kisutch); and Oregon Coast coho salmon (O. kisutch). On April 18, 2000, NMFS received a letter from COE providing additional information on proposed criteria to be included in the RGP. On May 12, 2000, NMFS received an e-mail with further proposed criteria to be included in the RGP. Title: Proposed regional general permit for stream restoration : programmatic biological opinion On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation for programmatic coverage for a proposed Regional General Permit (RGP) for certain stream restoration activities (habitat restoration using large wood or boulders throughout the State of Oregon) requiring COE approval. The Biological Assessment (BA) provided with the request determined that the proposed activities covered under the RGP would be likely to adversely affect anadromous fish species listed under the ESA (Table 1). Species considered in this Biological Opinion (Opinion) are: Snake River sockeye salmon (Oncorhynchus nerka); Snake River spring /summer chinook salmon (O. tshawytscha); Snake River fall chinook salmon (O. tshawytscha); Lower Columbia River steelhead (O. mykiss); Upper Columbia River steelhead (O. mykiss); Snake River steelhead (O. mykiss); Upper Willamette River steelhead (O. mykiss); Middle Columbia River steelhead (O. mykiss); Columbia River chum salmon (O. keta); Lower Columbia River chinook salmon (O. tshawytscha); Upper Willamette River chinook salmon (O. tshawytscha); Upper Columbia River spring run chinook salmon (O. tshawytscha); S. Oregon/N. California Coast coho salmon (O. kisutch); and Oregon Coast coho salmon (O. kisutch). On April 18, 2000, NMFS received a letter from COE providing additional information on proposed criteria to be included in the RGP. On May 12, 2000, NMFS received an e-mail with further proposed criteria to be included in the RGP. Close

• 39. [Article] Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout

  On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under ...

  Citation × Citation Citation Abstract Copy Title: Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under the Endangered Species Act (ESA). The effective date for the final listing was May 24, 1999, and the ESU is defined as 'all naturally spawned populations of spring-run chinook salmon residing below impassable natural barriers' (64 FR 14308). Critical habitat for this ESU was proposed on March 9, 1998 (63 FR 11482), and this proposed designation is still pending at the time of this Biological Opinion. Upper Willamette River chinook salmon occur within the action area of this consultation. The Upper Willamette River steelhead ESU was listed as threatened under the ESA (64 FR 14517; March 25, 1999) simultaneously with Upper Willamette River chinook salmon, but its range does not include the action area for this consultation 1 , and it is not addressed in this Biological Opinion. The objective of this Biological Opinion is to address the effects of providing a license to operate the McKenzie project, as proposed by FERC, on listed UW chinook salmon and bull trout, and to determine if this federal action by FERC will jeopardize the continued existence of either species. It will also serve as a conference opinion on the effects of the proposed action on proposed UW chinook salmon critical habitat. Until FERC issues a license for the McKenzie project incorporating the reasonable and prudent measures of this Biological Opinion, the existing project has no authorization for take of listed species Title: Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under the Endangered Species Act (ESA). The effective date for the final listing was May 24, 1999, and the ESU is defined as 'all naturally spawned populations of spring-run chinook salmon residing below impassable natural barriers' (64 FR 14308). Critical habitat for this ESU was proposed on March 9, 1998 (63 FR 11482), and this proposed designation is still pending at the time of this Biological Opinion. Upper Willamette River chinook salmon occur within the action area of this consultation. The Upper Willamette River steelhead ESU was listed as threatened under the ESA (64 FR 14517; March 25, 1999) simultaneously with Upper Willamette River chinook salmon, but its range does not include the action area for this consultation 1 , and it is not addressed in this Biological Opinion. The objective of this Biological Opinion is to address the effects of providing a license to operate the McKenzie project, as proposed by FERC, on listed UW chinook salmon and bull trout, and to determine if this federal action by FERC will jeopardize the continued existence of either species. It will also serve as a conference opinion on the effects of the proposed action on proposed UW chinook salmon critical habitat. Until FERC issues a license for the McKenzie project incorporating the reasonable and prudent measures of this Biological Opinion, the existing project has no authorization for take of listed species Close

• 40. [Article] When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon

  This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more ...

  Citation × Citation Citation Abstract Copy Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close

• 41. [Article] Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs

  El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario ...

  Citation × Citation Citation Abstract Copy Title: Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs Author: Bisson, Peter A., Goodman, Daniel, Loudenslager, Eric J., Philipp, David P., Huntly, Nancy, Coutant, Charles C., Bilby, Robert, Whitney, Richard R., Williams, Richard N., Hanna, Susan S., Merrill, Erik, Riddell, Brian, Epifanio, John M., Liss, William, McDonald, Lyman L., Smoker, William El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario de la creacion del Consejo para la Conservacion y Poder del Noroeste y el 10 degree aniversario de la enmienda al Acto de Poder del Noroeste, que formaliza el arbitraje cientifico del Programa de Pesca y Vida Silvestre de dicho consejo, asi como de sus proyectos individuales. Durante la ultima decada, los autores del presente trabajo fungieron como arbitros de estos proyectos. Los esfuerzos de recuperacion en el Rio Columbia constituyen una iniciativa muy importante en cuanto a la rehabilitacion de pesquerias y ecosistemas. En este articulo se examinan algunas lecciones aprendidas durante el proceso de revision de investigacion, monitoreo y evaluacion de proyectos y su repercusion sobre el avance del conocimiento (manejo adaptativo) en el Programa de Pesca y Vida Silvestre de la Cuenca del Rio Columbia, uno de los programas de recuperacion mas ambiciosos y de mas largo plazo en los Estados Unidos de Norteamerica. Title: Research, Monitoring, and Evaluation of Fish and Wildlife Restoration Projects in the Columbia River Basin: Lessons Learned and Suggestions for Large- Scale Monitoring Programs Author: Bisson, Peter A., Goodman, Daniel, Loudenslager, Eric J., Philipp, David P., Huntly, Nancy, Coutant, Charles C., Bilby, Robert, Whitney, Richard R., Williams, Richard N., Hanna, Susan S., Merrill, Erik, Riddell, Brian, Epifanio, John M., Liss, William, McDonald, Lyman L., Smoker, William El ano 2006 representa en dos sentidos una fecha critica para la cuenca del Rio Columbia y para los esfuerzos de recuperacion del salmon y la trucha arcoiris en la region Pacifico Noroeste: el 25 aniversario de la creacion del Consejo para la Conservacion y Poder del Noroeste y el 10 degree aniversario de la enmienda al Acto de Poder del Noroeste, que formaliza el arbitraje cientifico del Programa de Pesca y Vida Silvestre de dicho consejo, asi como de sus proyectos individuales. Durante la ultima decada, los autores del presente trabajo fungieron como arbitros de estos proyectos. Los esfuerzos de recuperacion en el Rio Columbia constituyen una iniciativa muy importante en cuanto a la rehabilitacion de pesquerias y ecosistemas. En este articulo se examinan algunas lecciones aprendidas durante el proceso de revision de investigacion, monitoreo y evaluacion de proyectos y su repercusion sobre el avance del conocimiento (manejo adaptativo) en el Programa de Pesca y Vida Silvestre de la Cuenca del Rio Columbia, uno de los programas de recuperacion mas ambiciosos y de mas largo plazo en los Estados Unidos de Norteamerica. Close

• 42. [Article] Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor ...

  Citation × Citation Citation Abstract Copy Title: Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon Author: Orsi, J. A., Morris, J. F. T., Teel, D. J., Farley, E. V., Jr., Weitkamp, L. A., Trudel, M., Fisher, J. P., Sweeting, R. M., Hinton, S. A., Thiess, M. E. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uz8B2_Pn-Hs. Title: Early Ocean Dispersal Patterns of Columbia River Chinook and Coho Salmon Author: Orsi, J. A., Morris, J. F. T., Teel, D. J., Farley, E. V., Jr., Weitkamp, L. A., Trudel, M., Fisher, J. P., Sweeting, R. M., Hinton, S. A., Thiess, M. E. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uz8B2_Pn-Hs. Close

• 43. [Article] Life history and evolutionary adaptation of Pacific salmon and its application in management

  An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks ...

  Citation × Citation Citation Abstract Copy Title: Life history and evolutionary adaptation of Pacific salmon and its application in management Author: Wevers, Mary Jo An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks is presented. Species, stocks, and local populations are viewed as systems that are continuously adapting to changing environmental conditions. They have the potential capacity to evolve in different ways in different environments through both life history and evolutionary adaptation. Habitat organization forms a template for genus, species, stock, and local population life history organization. Harvesting, habitat alteration resulting from land use practices and other human activities can alter the organization and adaptive capacities of species and stocks, and thus their long term persistence. The adaptive capacity of Oncorhynchus relative to its habitat and management environment is examined at the species, stock, and local population levels. Life history characteristics of representative stocks and local populations are analyzed using Detrended Correspondence Analysis (DECORANA). Fresh water migration distance and latitude are used to "explain" ordination patterns of Oncorhynchus species in the North Pacific Basin. Fresh water migration difficulty and mean annual runoff are used to interpret life history patterns of Columbia Basin chinook salmon stocks. Upstream migration difficulty and fall water temperatures are used to explain the ordination patterns of local populations of Willamette spring chinook salmon. Fishery management practices are examined in terms of their impacts on the organization and adaptive capacity of species, stocks, and local populations of Oncorhynchus. Management generalizations and guidelines derived from the life history theory are applied to management of Willamette spring chinook salmon. Maintaining habitat changes in the Willamette Basin within the historic range of fluctuations will tend to maximize co-organization of local populations. Management activities should provide relatively constant habitat and fishery conditions for natural selection processes to "organize" life history traits over a period of at least a few generations. Fisheries should selectively harvest local populations that show a high degree of realization of their adaptive capacity. By focusing instead on maximizing the co-organization of stocks, their habitat and fishery environments, and protecting the adaptive capacities of stocks, we will go a long way toward providing long-term sustainability for social communities dependent on fisheries. Title: Life history and evolutionary adaptation of Pacific salmon and its application in management Author: Wevers, Mary Jo An approach to understanding and managing anadromous salmon, steelhead, and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and evolutionary adaptive capacities of species and stocks is presented. Species, stocks, and local populations are viewed as systems that are continuously adapting to changing environmental conditions. They have the potential capacity to evolve in different ways in different environments through both life history and evolutionary adaptation. Habitat organization forms a template for genus, species, stock, and local population life history organization. Harvesting, habitat alteration resulting from land use practices and other human activities can alter the organization and adaptive capacities of species and stocks, and thus their long term persistence. The adaptive capacity of Oncorhynchus relative to its habitat and management environment is examined at the species, stock, and local population levels. Life history characteristics of representative stocks and local populations are analyzed using Detrended Correspondence Analysis (DECORANA). Fresh water migration distance and latitude are used to "explain" ordination patterns of Oncorhynchus species in the North Pacific Basin. Fresh water migration difficulty and mean annual runoff are used to interpret life history patterns of Columbia Basin chinook salmon stocks. Upstream migration difficulty and fall water temperatures are used to explain the ordination patterns of local populations of Willamette spring chinook salmon. Fishery management practices are examined in terms of their impacts on the organization and adaptive capacity of species, stocks, and local populations of Oncorhynchus. Management generalizations and guidelines derived from the life history theory are applied to management of Willamette spring chinook salmon. Maintaining habitat changes in the Willamette Basin within the historic range of fluctuations will tend to maximize co-organization of local populations. Management activities should provide relatively constant habitat and fishery conditions for natural selection processes to "organize" life history traits over a period of at least a few generations. Fisheries should selectively harvest local populations that show a high degree of realization of their adaptive capacity. By focusing instead on maximizing the co-organization of stocks, their habitat and fishery environments, and protecting the adaptive capacities of stocks, we will go a long way toward providing long-term sustainability for social communities dependent on fisheries. Close

• 44. [Article] Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin

  Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has ...

  Citation × Citation Citation Abstract Copy Title: Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin Author: Eiler, John H. Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has raised concerns over the future status of the returns, and severely impacted commercial and subsistence fisheries within the drainage. Management is further complicated by the mixed-stock composition of the run, the presence of other temporally similar salmon species, and the need to equitably allocate harvests between the numerous fisheries and user groups scattered throughout the basin. Detailed information is needed on Chinook salmon run characteristics to better understand and manage the returns, and facilitate conservation efforts. However, this goal is exacerbated by the massive size and remote nature of the basin, the large number of highly mobile fish, and the compressed timing of the run. To address these challenges, radio telemetry was used to determine the stock composition and spawning distribution of the returns, and the migratory characteristics of the fish. The migratory patterns exhibited by returning salmon provide a number of insights into the status of the run. Since the Yukon River is essentially free-flowing (i.e., not regulated), this study also presented an opportunity to document the distribution and upriver movements of large returns of wild Chinook salmon under natural conditions. During 2002-2004, returning adult Chinook salmon were captured in the lower Yukon River (approximately 300 km upriver from the river mouth), tagged with radio transmitters, and tracked upriver using remote tracking stations located on important migratory routes and major spawning tributaries. Aerial tracking surveys were used to locate fish in spawning areas and between stations. The fish responded well to the capture and handling procedures, with most (2,790, 98%) resuming upriver movements. Although the fish initially displayed a negative tagging response, with slower migration rates observed immediately after release, the duration of this response was relatively short (several days) and less severe as the fish moved upriver. Independent measures indicated that the swimming speeds and timing of the fish upriver from the tagging area were comparable to untagged fish, suggesting that the tagging methods used were relatively benign. Fish returned to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging area. Distribution patterns were similar across years, suggesting that the principal components of the run were identified. Most spawning fish were clustered in a number of key tributaries, with smaller numbers of fish located in other spatially isolated areas. The fish typically returned to clear water tributaries that were relatively entrenched, had moderate gradients, and were associated with upland areas. Fish were largely absent in lowland reaches characterized by meandering, low gradient, highly alluvial channels often associated with main river floodplains. There was suggestive evidence of mainstem spawning in reaches of the Upper Yukon. The status of fish remaining in other mainstem areas was less certain, and may represent local spawning activity or fish that died while in-transit to upriver areas. Although Chinook salmon spawned throughout the basin, the run was dominated by two regional components (Tanana and Upper Yukon), which annually comprised over 70% of the return. Substantially fewer fish returned to other areas ranging from 2-9% of the return, although the collective contribution of these stocks was appreciable. Most regional returns consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that these abundance differences were not related to regional or stock-specific differences. Run timing was relatively compressed compared to rivers in the southern portion of the range, with most stocks passing through the lower river over a 6-week period, ranging from 16 to 38 d. Run timing was generally earlier for stocks traveling farther upriver, although exceptions were noted. Lower basin stocks were primarily later run fish. Pronounced differences were observed in the migration rates (km/d) exhibited by regional stocks. Substantially slower swimming speeds were observed for fish returning to terminal tributaries in the lower basin ranging from 28-40 km/d compared to 52-62 km/d for upper basin stocks. The migratory patterns (migration rates in sequential reaches) of the fish also showed distinct regional differences. Average migration rates through the lower river were remarkably similar for the different stocks, ranging from 57-62 km/d, with most stocks exhibiting a general decline as the fish moved farther upriver. Tanana River stocks displayed a pronounced reduction in swimming speed after leaving the Yukon River main stem, with migration rates declining to 24 km/d on average as the fish approached their terminal tributaries. Conversely, upper basin stocks exhibited a relatively gradual (but variable) overall decline in migration rate even though these fish were traveling substantially greater distances upriver. Average migration rates for upper basin stocks ranged from 43-61 km/d as the fish approached their terminal tributaries. There was substantial variation in the migratory patterns exhibited by individual fish, although these patterns tended to be similar to the patterns exhibited by the regional stocks, particularly as the fish moved farther upriver from the tagging area. The dominant source of variation among fish reflected the average migration rate, with individual fish traveling slower in the lower basin exhibiting consistently slower migration rates as they moved upriver compared to their faster moving counterparts. This migratory pattern was consistent across stocks, and on average explained 74% of the within-stock variation in migration rate represented by the multivariate data. The second source of variation in migration rate reflected a shift in the relative swimming speeds of the individual fish as they progressed upriver. Although movement rates declined for nearly all of the fish during the migration, differences were observed in the pattern of the decline. Fish with faster migration rates in the lower river exhibited a pronounced decline in swimming speed as they moved upriver, whereas fish moving slower in the lower river displayed a more gradual decline in migration rate. On average, this migratory pattern explained 22% of the within-stock variation in migration rate represented by the multivariate data. Most fish (98%) exhibited continuous upriver movements and strong fidelity to the rivers they entered. However a small number of fish (n = 66) deviated from this pattern. Some of these individuals initially passed their final destination and continued upriver for varying distances before reversing direction, swimming back downstream, and entering their terminal tributary. Although most of these excursions were relatively short (< 30 km), there were several instances where fish traveled hundreds of kilometers out of their way. Thirty-four fish tracked to terminal tributaries subsequently left these rivers, and traveled to other terminal tributaries within the basin (n = 31) or were harvested in upriver fisheries (n = 3). Although most of these incidents involved nearby tributaries, major diversions were also observed, with several fish traveling over 300 km to natal rivers after leaving the initial tributary. Chinook salmon returns to the Yukon River typically consisted of a series of distinct and sizable increases in the number fish entering the river over the course of the run, commonly referred to as pulses. A large number of fish (n = 251) were radio tagged over a 4-day period during a pulse in 2003 to provide information on the progression of the pulse as it moved upriver. The time taken by the pulse to move past subsequent upriver locations increased as the fish moved farther upriver from the tagging area, with the fish passing sites located 580 and 800 km upriver over a span of 14 and 21 d, respectively. Although not surprising considering the extensive variation in migration rates observed among individual fish, this finding does suggest that these pulses do not represent cohesive aggregates of fish moving upriver. Unlike the well established methods used to estimate other life history characteristics, the development of quantitative methods for analyzing and modeling fish movements has lagged noticeably behind, due in part to the complexity associated with movement data and (prior to the advent of telemetry) the difficulty of collecting this type of information on free-ranging individuals. Two fundamentally different analytical approaches, hierarchical linear regression models and multivariate ordination, were used during this study to evaluate factors thought to influence the upriver movements of the fish. In spite of the inherent differences, both methods provided strikingly similar results, indicating that the study findings were not dependent on the approach used, and suggesting that the results were plausible based on the information available and the weight of evidence. Both analytical methods had advantages, and provided complementary information. With hierarchical linear models, it was possible to simultaneously evaluate a wide range of explanatory variables (in our case, both biological and environmental), which provided standardized comparisons and simplified the interpretation of the results. Since both fixed and random effects were incorporated in the models, it was possible to account for sources of variation when insufficient information was available to identify the underlining factors – an important consideration since few field studies provide comprehensive data. With multivariate ordination, separate analyzes were needed to examine the relationships between the migration rates and the biotic and physical variables. In addition to being cumbersome, this limitation made it more difficult to compare the relative influence of the different factors and interactions between factors. However, ordination was very useful as an exploratory tool. Although compartmentalized by stock, across fish comparisons were simple and relatively straightforward. Because the explanatory variables were evaluated separately in relation to the ordination score assigned to the fish, it was possible to examine and compare highly correlated variables. Ordination was also able to identify overall patterns within the data and assess the relative importance. While this can be accomplished within the framework of linear regression using mixture models to determine whether multiple distributions exist within the data, the process is much simpler with ordination. The migratory patterns of the fish were influenced by a wide range of factors, with evidentiary support for complex, multi-faceted relationships. Physical features of the basin demonstrated stronger explanatory power, accounting for over 70% of the observed variation in migration rate compared to 18% for the biological characteristics of the fish. Parameter estimates associated with the steepness of the migratory route and remaining distance the fish had to travel to reach their natal rivers were most strongly correlated with migration rate, with consistent relationships observed across stocks. Migration rates were also noticeably slower in extensively braided reaches of the basin. The weaker relationships between migration rate and biotic factors may reflect stabilizing selection on long-distance migrants. Smaller fish exhibited minimally faster swimming speeds on average than larger individuals. This relationship was stronger in highly braided reaches. Run timing was positively related to migration rate for most stocks. Surprisingly, upper basin stocks traveling farther upriver displayed progressively negative relationships, suggesting that late-run fish were moving slower. Ancillary information suggests that this decline may relate to deteriorating fish condition later in the season. Title: Distribution and movements of Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin Author: Eiler, John H. Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has raised concerns over the future status of the returns, and severely impacted commercial and subsistence fisheries within the drainage. Management is further complicated by the mixed-stock composition of the run, the presence of other temporally similar salmon species, and the need to equitably allocate harvests between the numerous fisheries and user groups scattered throughout the basin. Detailed information is needed on Chinook salmon run characteristics to better understand and manage the returns, and facilitate conservation efforts. However, this goal is exacerbated by the massive size and remote nature of the basin, the large number of highly mobile fish, and the compressed timing of the run. To address these challenges, radio telemetry was used to determine the stock composition and spawning distribution of the returns, and the migratory characteristics of the fish. The migratory patterns exhibited by returning salmon provide a number of insights into the status of the run. Since the Yukon River is essentially free-flowing (i.e., not regulated), this study also presented an opportunity to document the distribution and upriver movements of large returns of wild Chinook salmon under natural conditions. During 2002-2004, returning adult Chinook salmon were captured in the lower Yukon River (approximately 300 km upriver from the river mouth), tagged with radio transmitters, and tracked upriver using remote tracking stations located on important migratory routes and major spawning tributaries. Aerial tracking surveys were used to locate fish in spawning areas and between stations. The fish responded well to the capture and handling procedures, with most (2,790, 98%) resuming upriver movements. Although the fish initially displayed a negative tagging response, with slower migration rates observed immediately after release, the duration of this response was relatively short (several days) and less severe as the fish moved upriver. Independent measures indicated that the swimming speeds and timing of the fish upriver from the tagging area were comparable to untagged fish, suggesting that the tagging methods used were relatively benign. Fish returned to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging area. Distribution patterns were similar across years, suggesting that the principal components of the run were identified. Most spawning fish were clustered in a number of key tributaries, with smaller numbers of fish located in other spatially isolated areas. The fish typically returned to clear water tributaries that were relatively entrenched, had moderate gradients, and were associated with upland areas. Fish were largely absent in lowland reaches characterized by meandering, low gradient, highly alluvial channels often associated with main river floodplains. There was suggestive evidence of mainstem spawning in reaches of the Upper Yukon. The status of fish remaining in other mainstem areas was less certain, and may represent local spawning activity or fish that died while in-transit to upriver areas. Although Chinook salmon spawned throughout the basin, the run was dominated by two regional components (Tanana and Upper Yukon), which annually comprised over 70% of the return. Substantially fewer fish returned to other areas ranging from 2-9% of the return, although the collective contribution of these stocks was appreciable. Most regional returns consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that these abundance differences were not related to regional or stock-specific differences. Run timing was relatively compressed compared to rivers in the southern portion of the range, with most stocks passing through the lower river over a 6-week period, ranging from 16 to 38 d. Run timing was generally earlier for stocks traveling farther upriver, although exceptions were noted. Lower basin stocks were primarily later run fish. Pronounced differences were observed in the migration rates (km/d) exhibited by regional stocks. Substantially slower swimming speeds were observed for fish returning to terminal tributaries in the lower basin ranging from 28-40 km/d compared to 52-62 km/d for upper basin stocks. The migratory patterns (migration rates in sequential reaches) of the fish also showed distinct regional differences. Average migration rates through the lower river were remarkably similar for the different stocks, ranging from 57-62 km/d, with most stocks exhibiting a general decline as the fish moved farther upriver. Tanana River stocks displayed a pronounced reduction in swimming speed after leaving the Yukon River main stem, with migration rates declining to 24 km/d on average as the fish approached their terminal tributaries. Conversely, upper basin stocks exhibited a relatively gradual (but variable) overall decline in migration rate even though these fish were traveling substantially greater distances upriver. Average migration rates for upper basin stocks ranged from 43-61 km/d as the fish approached their terminal tributaries. There was substantial variation in the migratory patterns exhibited by individual fish, although these patterns tended to be similar to the patterns exhibited by the regional stocks, particularly as the fish moved farther upriver from the tagging area. The dominant source of variation among fish reflected the average migration rate, with individual fish traveling slower in the lower basin exhibiting consistently slower migration rates as they moved upriver compared to their faster moving counterparts. This migratory pattern was consistent across stocks, and on average explained 74% of the within-stock variation in migration rate represented by the multivariate data. The second source of variation in migration rate reflected a shift in the relative swimming speeds of the individual fish as they progressed upriver. Although movement rates declined for nearly all of the fish during the migration, differences were observed in the pattern of the decline. Fish with faster migration rates in the lower river exhibited a pronounced decline in swimming speed as they moved upriver, whereas fish moving slower in the lower river displayed a more gradual decline in migration rate. On average, this migratory pattern explained 22% of the within-stock variation in migration rate represented by the multivariate data. Most fish (98%) exhibited continuous upriver movements and strong fidelity to the rivers they entered. However a small number of fish (n = 66) deviated from this pattern. Some of these individuals initially passed their final destination and continued upriver for varying distances before reversing direction, swimming back downstream, and entering their terminal tributary. Although most of these excursions were relatively short (< 30 km), there were several instances where fish traveled hundreds of kilometers out of their way. Thirty-four fish tracked to terminal tributaries subsequently left these rivers, and traveled to other terminal tributaries within the basin (n = 31) or were harvested in upriver fisheries (n = 3). Although most of these incidents involved nearby tributaries, major diversions were also observed, with several fish traveling over 300 km to natal rivers after leaving the initial tributary. Chinook salmon returns to the Yukon River typically consisted of a series of distinct and sizable increases in the number fish entering the river over the course of the run, commonly referred to as pulses. A large number of fish (n = 251) were radio tagged over a 4-day period during a pulse in 2003 to provide information on the progression of the pulse as it moved upriver. The time taken by the pulse to move past subsequent upriver locations increased as the fish moved farther upriver from the tagging area, with the fish passing sites located 580 and 800 km upriver over a span of 14 and 21 d, respectively. Although not surprising considering the extensive variation in migration rates observed among individual fish, this finding does suggest that these pulses do not represent cohesive aggregates of fish moving upriver. Unlike the well established methods used to estimate other life history characteristics, the development of quantitative methods for analyzing and modeling fish movements has lagged noticeably behind, due in part to the complexity associated with movement data and (prior to the advent of telemetry) the difficulty of collecting this type of information on free-ranging individuals. Two fundamentally different analytical approaches, hierarchical linear regression models and multivariate ordination, were used during this study to evaluate factors thought to influence the upriver movements of the fish. In spite of the inherent differences, both methods provided strikingly similar results, indicating that the study findings were not dependent on the approach used, and suggesting that the results were plausible based on the information available and the weight of evidence. Both analytical methods had advantages, and provided complementary information. With hierarchical linear models, it was possible to simultaneously evaluate a wide range of explanatory variables (in our case, both biological and environmental), which provided standardized comparisons and simplified the interpretation of the results. Since both fixed and random effects were incorporated in the models, it was possible to account for sources of variation when insufficient information was available to identify the underlining factors – an important consideration since few field studies provide comprehensive data. With multivariate ordination, separate analyzes were needed to examine the relationships between the migration rates and the biotic and physical variables. In addition to being cumbersome, this limitation made it more difficult to compare the relative influence of the different factors and interactions between factors. However, ordination was very useful as an exploratory tool. Although compartmentalized by stock, across fish comparisons were simple and relatively straightforward. Because the explanatory variables were evaluated separately in relation to the ordination score assigned to the fish, it was possible to examine and compare highly correlated variables. Ordination was also able to identify overall patterns within the data and assess the relative importance. While this can be accomplished within the framework of linear regression using mixture models to determine whether multiple distributions exist within the data, the process is much simpler with ordination. The migratory patterns of the fish were influenced by a wide range of factors, with evidentiary support for complex, multi-faceted relationships. Physical features of the basin demonstrated stronger explanatory power, accounting for over 70% of the observed variation in migration rate compared to 18% for the biological characteristics of the fish. Parameter estimates associated with the steepness of the migratory route and remaining distance the fish had to travel to reach their natal rivers were most strongly correlated with migration rate, with consistent relationships observed across stocks. Migration rates were also noticeably slower in extensively braided reaches of the basin. The weaker relationships between migration rate and biotic factors may reflect stabilizing selection on long-distance migrants. Smaller fish exhibited minimally faster swimming speeds on average than larger individuals. This relationship was stronger in highly braided reaches. Run timing was positively related to migration rate for most stocks. Surprisingly, upper basin stocks traveling farther upriver displayed progressively negative relationships, suggesting that late-run fish were moving slower. Ancillary information suggests that this decline may relate to deteriorating fish condition later in the season. Close

• 45. [Article] Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries ...

  Citation × Citation Citation Abstract Copy Title: Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon Author: Mohr, Michael S., Banks, Michael A., Borgerson, Lisa A., Lawson, Peter W., Anderson, Eric C., Garza, John Carlos, Crandall, Eric D., Satterthwaite, William H., O'Farrell, Michael R., Bellinger, M. Renee, Palmer-Zwahlen, Melodie L., Bates, Sarah J., Kormos, Brett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/utaf20/current#.UzNNkfPn-Hs. Title: Use of Genetic Stock Identification Data for Comparison of the Ocean Spatial Distribution, Size at Age, and Fishery Exposure of an Untagged Stock and Its Indicator: California Coastal versus Klamath River Chinook Salmon Author: Mohr, Michael S., Banks, Michael A., Borgerson, Lisa A., Lawson, Peter W., Anderson, Eric C., Garza, John Carlos, Crandall, Eric D., Satterthwaite, William H., O'Farrell, Michael R., Bellinger, M. Renee, Palmer-Zwahlen, Melodie L., Bates, Sarah J., Kormos, Brett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/utaf20/current#.UzNNkfPn-Hs. Close

• 46. [Article] Effects of juvenile steelhead on juvenile chinook salmon behavior and physiology

  Experiments were designed to determine whether and how steelhead Oncorhynchus mykiss affect chinook salmon O. tshawytscha when the two species are confined together. In a behavioral experiment, we observed ...

  Citation × Citation Citation Abstract Copy Title: Effects of juvenile steelhead on juvenile chinook salmon behavior and physiology Author: Schreck, Carl B., Congleton, J. L., Kelsey, D. A., Davis, L. E. Experiments were designed to determine whether and how steelhead Oncorhynchus mykiss affect chinook salmon O. tshawytscha when the two species are confined together. In a behavioral experiment, we observed groups of juvenile chinook salmon and steelhead together and groups of chinook salmon alone to determine whether the steelhead were aggressive and their presence changed the behavior of chinook salmon. We also performed two runs of a physiological experiment to determine whether the addition of steelhead to tanks containing chinook salmon would stress the chinook salmon, as determined by a change in their plasma cortisol levels. Behavioral changes were observed in the chinook salmon when they were held with steelhead; they reduced their movements, darted less, were attacked up to 16 times as often, and were found less frequently in the shade than chinook salmon held without steelhead. Steelhead were found to establish territories and defend them with chases, charges, and nips. In their attempts to establish and defend territories, the steelhead attacked the chinook salmon as often as they attacked other steelhead, but the chinook salmon showed little aggression toward the steelhead. Cortisol concentrations were significantly higher for chinook salmon in tanks receiving steelhead than in tanks receiving additional chinook salmon or no additional fish after 2 h (in one of the two experimental runs) and after 32 h (in both experimental runs; combined data). These results suggest that confining steelhead and chinook salmon together, such as in raceways and barges in the Columbia River system and in other situations, is stressful to the chinook salmon. Title: Effects of juvenile steelhead on juvenile chinook salmon behavior and physiology Author: Schreck, Carl B., Congleton, J. L., Kelsey, D. A., Davis, L. E. Experiments were designed to determine whether and how steelhead Oncorhynchus mykiss affect chinook salmon O. tshawytscha when the two species are confined together. In a behavioral experiment, we observed groups of juvenile chinook salmon and steelhead together and groups of chinook salmon alone to determine whether the steelhead were aggressive and their presence changed the behavior of chinook salmon. We also performed two runs of a physiological experiment to determine whether the addition of steelhead to tanks containing chinook salmon would stress the chinook salmon, as determined by a change in their plasma cortisol levels. Behavioral changes were observed in the chinook salmon when they were held with steelhead; they reduced their movements, darted less, were attacked up to 16 times as often, and were found less frequently in the shade than chinook salmon held without steelhead. Steelhead were found to establish territories and defend them with chases, charges, and nips. In their attempts to establish and defend territories, the steelhead attacked the chinook salmon as often as they attacked other steelhead, but the chinook salmon showed little aggression toward the steelhead. Cortisol concentrations were significantly higher for chinook salmon in tanks receiving steelhead than in tanks receiving additional chinook salmon or no additional fish after 2 h (in one of the two experimental runs) and after 32 h (in both experimental runs; combined data). These results suggest that confining steelhead and chinook salmon together, such as in raceways and barges in the Columbia River system and in other situations, is stressful to the chinook salmon. Close

• 47. [Article] Neural gene expression profiling in chinook salmon (Oncorhynchus tshawytscha) of alternate run times

  Chinook salmon (Oncorhynchus tshawytscha) display the greatest variability of return times to freshwater of all Pacific salmon. Differential return times to freshwater have segregated populations of ...

  Citation × Citation Citation Abstract Copy Title: Neural gene expression profiling in chinook salmon (Oncorhynchus tshawytscha) of alternate run times Author: Bernier, Jeremiah C. Chinook salmon (Oncorhynchus tshawytscha) display the greatest variability of return times to freshwater of all Pacific salmon. Differential return times to freshwater have segregated populations of Chinook into two broad types or runs, fall and spring, named for the time of year in which they migrate to freshwater. Migration time in Chinook has a strong genetic component, and historically, fall and spring runs were spatially and temporally isolated in watersheds. Using a population of Chinook from California’s Central Valley, I sought to examine gene regulation that results in differential run-timing. Functional genomics has proven to be powerful in distinguishing genes differentially expressed between alternate behaviors in other systems and I used the technique LongSAGE to examine genes differentially regulated between fall and spring run Chinook during freshwater migration. I constructed three LongSAGE libraries from the brains of a spring, fall and ocean sample and observed 221 differentially expressed tags. Using expressed sequence tag (EST) libraries from Atlantic salmon (Salmo salar) and rainbow trout (O. mykiss), I was able to assign putative functions to 59% of differentially expressed tags. Additionally, I tested the expression levels of seven genes in the brains of 8 additional individuals from both runs and found none significantly differentially expressed between fall and spring runs. This study is the first to apply LongSAGE to salmon and provides a framework for conducting future gene expression research into reproduction and migration times, as well as physiology of migrating salmon. Title: Neural gene expression profiling in chinook salmon (Oncorhynchus tshawytscha) of alternate run times Author: Bernier, Jeremiah C. Chinook salmon (Oncorhynchus tshawytscha) display the greatest variability of return times to freshwater of all Pacific salmon. Differential return times to freshwater have segregated populations of Chinook into two broad types or runs, fall and spring, named for the time of year in which they migrate to freshwater. Migration time in Chinook has a strong genetic component, and historically, fall and spring runs were spatially and temporally isolated in watersheds. Using a population of Chinook from California’s Central Valley, I sought to examine gene regulation that results in differential run-timing. Functional genomics has proven to be powerful in distinguishing genes differentially expressed between alternate behaviors in other systems and I used the technique LongSAGE to examine genes differentially regulated between fall and spring run Chinook during freshwater migration. I constructed three LongSAGE libraries from the brains of a spring, fall and ocean sample and observed 221 differentially expressed tags. Using expressed sequence tag (EST) libraries from Atlantic salmon (Salmo salar) and rainbow trout (O. mykiss), I was able to assign putative functions to 59% of differentially expressed tags. Additionally, I tested the expression levels of seven genes in the brains of 8 additional individuals from both runs and found none significantly differentially expressed between fall and spring runs. This study is the first to apply LongSAGE to salmon and provides a framework for conducting future gene expression research into reproduction and migration times, as well as physiology of migrating salmon. Close

• 48. [Article] The US salmon market : demand characteristics and price linkage

  Research Paper

  Citation × Citation Citation Abstract Copy Title: The US salmon market : demand characteristics and price linkage Author: Gordon, Daniel V., Clay, Patty L. Research Paper Title: The US salmon market : demand characteristics and price linkage Author: Gordon, Daniel V., Clay, Patty L. Research Paper Close

• 49. [Article] Assessing the feasibility of policy prescriptions in the Salmon 2100 Project

  Wild salmon populations are in decline in the Pacific Northwest. In the region populations and runs of Chinook (Oncorhynchus tshawytsha), Chum (Oncorhynchus keta), Coho (Oncorhynchus kisutch), Sockey (Oncorhynchus ...

  Citation × Citation Citation Abstract Copy Title: Assessing the feasibility of policy prescriptions in the Salmon 2100 Project Author: Whitehead, Katharine S. Wild salmon populations are in decline in the Pacific Northwest. In the region populations and runs of Chinook (Oncorhynchus tshawytsha), Chum (Oncorhynchus keta), Coho (Oncorhynchus kisutch), Sockey (Oncorhynchus nerka), and Steelhead (Oncorhynchus mykiss) have been listed as threatened and/or endangered under the Endangered Species Act (ESA) in the U.S. and/or the Species at Risk Act (SARA) in Canada in the years 1991-2007. Considerable time, money and brainpower has been put into salmon recovery with mixed results. The future for wild salmon in the Pacific Northwest remains uncertain. In 2006 Salmon 2100: The Future of Wild Pacific Salmon was published. The book is made up of 23 essays by 33 authors who were challenged to each develop a comprehensive policy prescription in response to the question: “What specific policies must be implemented in order to have a high probability of sustaining significant runs of wild salmon through 2100 in California, Oregon, Washington, Idaho, and southern British Columbia?” A qualitative study was designed to assess whether any of the policy prescriptions presented in Salmon 2100: The Future of Wild Pacific Salmon are feasible or viable in the real world. A thorough document analysis was conducted of Salmon 2100: The Future of Wild Pacific Salmon. The Social Construction Framework was used to categorize the target populations, code the policy prescriptions, and identify the benefits and burdens of each policy prescription for each target population. This information was then used to assess the feasibility of each policy prescription, based on the Social Construction Framework. The findings suggest that some of the policy prescriptions are feasible and could be developed for successful implementation in the real world. There is evidence that projects similar to the Salmon 2100 project could provide useful information and potential solutions to other natural resource policy challenges. Title: Assessing the feasibility of policy prescriptions in the Salmon 2100 Project Author: Whitehead, Katharine S. Wild salmon populations are in decline in the Pacific Northwest. In the region populations and runs of Chinook (Oncorhynchus tshawytsha), Chum (Oncorhynchus keta), Coho (Oncorhynchus kisutch), Sockey (Oncorhynchus nerka), and Steelhead (Oncorhynchus mykiss) have been listed as threatened and/or endangered under the Endangered Species Act (ESA) in the U.S. and/or the Species at Risk Act (SARA) in Canada in the years 1991-2007. Considerable time, money and brainpower has been put into salmon recovery with mixed results. The future for wild salmon in the Pacific Northwest remains uncertain. In 2006 Salmon 2100: The Future of Wild Pacific Salmon was published. The book is made up of 23 essays by 33 authors who were challenged to each develop a comprehensive policy prescription in response to the question: “What specific policies must be implemented in order to have a high probability of sustaining significant runs of wild salmon through 2100 in California, Oregon, Washington, Idaho, and southern British Columbia?” A qualitative study was designed to assess whether any of the policy prescriptions presented in Salmon 2100: The Future of Wild Pacific Salmon are feasible or viable in the real world. A thorough document analysis was conducted of Salmon 2100: The Future of Wild Pacific Salmon. The Social Construction Framework was used to categorize the target populations, code the policy prescriptions, and identify the benefits and burdens of each policy prescription for each target population. This information was then used to assess the feasibility of each policy prescription, based on the Social Construction Framework. The findings suggest that some of the policy prescriptions are feasible and could be developed for successful implementation in the real world. There is evidence that projects similar to the Salmon 2100 project could provide useful information and potential solutions to other natural resource policy challenges. Close

• 50. [Article] Age, length and weight studies of three species of Columbia River salmon (Oncorhynchus keta, O. gorbuscha and O. kisutch)

  Samples, consisting of scales, length and weight measurements, and sex determinations of chum, pink, and silver salmons, were taken from the commercial catch in the Columbia River in 1914. Five hundred ...

  Citation × Citation Citation Abstract Copy Title: Age, length and weight studies of three species of Columbia River salmon (Oncorhynchus keta, O. gorbuscha and O. kisutch) Author: Marr, John C., Oregon. Fish Commission Samples, consisting of scales, length and weight measurements, and sex determinations of chum, pink, and silver salmons, were taken from the commercial catch in the Columbia River in 1914. Five hundred eighteen chum scales were examined. All fish had gone to sea early in their first year; and 70.5 percent had returned in their third year, 28.7 percent in their fourth, and 0.8 percent in their fifth. Growth curves, based on scale and fish measurements, are given for all sex-age groups. The length-weight relationship may be expressed by the equation Weight = 0.0001378 x Length [superscript 2.6004]. Tendencies were noted, during the course of the run, for older fish and for males to be relatively more abundant in the earlier portions of the run. In comparisons with data from other localities, it was demonstrated that, from south to north: (1) there is a decrease in mean length at the same age; (2) older fish are progressively more abundant; and (3) the runs are progressively earlier. Pink salmon are uncommon in the Columbia River, and only six were examined. All had gone to sea early in their first year, and all had returned in their second year. Eight hundred eighty-five silver salmon scales were examined. Of the total, 6.1 percent had gone to sea early in their second year, and returned late in their second year (2 [subscript 2]); 0.3 percent had gone to sea early in their third, and returned late in their third (3 [subscript 3]); 83.9 percent had gone to sea in their second, and returned in their third (3 [subscript 2]); and 9.7 percent had gone to sea in their third year, and returned during their fourth year (4 [subscript 3]). Growth curves are given for all, age groups. The length-weight relationship may be expressed by the equation Weight = 0.0000373 x Length [superscript 2.8945]. As in the case of the chums, changes were noted during the run in the sex ratio and the percentage of age classes. Comparison with data from other localities revealed south-to-north changes in size and in abundance of different age groups, similar to those demonstrated for the chums. It is felt that the differences between races of a single river system will prove to be of the same nature as those here demonstrated between populations of different river systems. Knowledge of the differences between the races of salmons entering the Columbia River may be of extreme importance in the management of the fisheries. Title: Age, length and weight studies of three species of Columbia River salmon (Oncorhynchus keta, O. gorbuscha and O. kisutch) Author: Marr, John C., Oregon. Fish Commission Samples, consisting of scales, length and weight measurements, and sex determinations of chum, pink, and silver salmons, were taken from the commercial catch in the Columbia River in 1914. Five hundred eighteen chum scales were examined. All fish had gone to sea early in their first year; and 70.5 percent had returned in their third year, 28.7 percent in their fourth, and 0.8 percent in their fifth. Growth curves, based on scale and fish measurements, are given for all sex-age groups. The length-weight relationship may be expressed by the equation Weight = 0.0001378 x Length [superscript 2.6004]. Tendencies were noted, during the course of the run, for older fish and for males to be relatively more abundant in the earlier portions of the run. In comparisons with data from other localities, it was demonstrated that, from south to north: (1) there is a decrease in mean length at the same age; (2) older fish are progressively more abundant; and (3) the runs are progressively earlier. Pink salmon are uncommon in the Columbia River, and only six were examined. All had gone to sea early in their first year, and all had returned in their second year. Eight hundred eighty-five silver salmon scales were examined. Of the total, 6.1 percent had gone to sea early in their second year, and returned late in their second year (2 [subscript 2]); 0.3 percent had gone to sea early in their third, and returned late in their third (3 [subscript 3]); 83.9 percent had gone to sea in their second, and returned in their third (3 [subscript 2]); and 9.7 percent had gone to sea in their third year, and returned during their fourth year (4 [subscript 3]). Growth curves are given for all, age groups. The length-weight relationship may be expressed by the equation Weight = 0.0000373 x Length [superscript 2.8945]. As in the case of the chums, changes were noted during the run in the sex ratio and the percentage of age classes. Comparison with data from other localities revealed south-to-north changes in size and in abundance of different age groups, similar to those demonstrated for the chums. It is felt that the differences between races of a single river system will prove to be of the same nature as those here demonstrated between populations of different river systems. Knowledge of the differences between the races of salmons entering the Columbia River may be of extreme importance in the management of the fisheries. Close

• 51. [Article] Price relationships between domestic wild salmon, aquacultured rainbow trout and Norwegian farmed salmon in Finland

  Research Paper

  Citation × Citation Citation Abstract Copy Title: Price relationships between domestic wild salmon, aquacultured rainbow trout and Norwegian farmed salmon in Finland Author: Mickwitz, Per Research Paper Title: Price relationships between domestic wild salmon, aquacultured rainbow trout and Norwegian farmed salmon in Finland Author: Mickwitz, Per Research Paper Close

• 52. [Article] The development and testing of techniques for studying the behavior of juvenile salmonids in reservoirs

  "The Oregon Fish Commission received a contract from the U. S. Fish and Wildlife Service, Bureau of Commercial Fisheries, under the Saltonstall-Kennedy Act for a study to develop methods for determining ...

  Citation × Citation Citation Abstract Copy Title: The development and testing of techniques for studying the behavior of juvenile salmonids in reservoirs Author: Gunsolus, Robert T., Korn, Lawrence, Oregon. Fish Commission "The Oregon Fish Commission received a contract from the U. S. Fish and Wildlife Service, Bureau of Commercial Fisheries, under the Saltonstall-Kennedy Act for a study to develop methods for determining the behavior of juvenile salmonids in reservoirs. The study, consisting of a literature survey and field program, was conducted in Felton and North Fork Reservoirs on the Deschutes and Clackamas Rivers, Oregon, between September 30, 1959 and January 31, 1962. Pelton Reservoir contains chinook salmon (Oncorhynchus tshawytscha), blueback salmon (0. nerka), and summer-run steelhead trout (Salmo airdneri); North Fork Reservoir contains chinook salmon, silver salmon (0. kisutch 1 and winter-run steelhead trout. Equipment tested included SCUBA (self-contained underwater breathing apparatus) for direct observation, gill nets for capture, and sonar for indirect observation of fish." (Abstract From Author) Title: The development and testing of techniques for studying the behavior of juvenile salmonids in reservoirs Author: Gunsolus, Robert T., Korn, Lawrence, Oregon. Fish Commission "The Oregon Fish Commission received a contract from the U. S. Fish and Wildlife Service, Bureau of Commercial Fisheries, under the Saltonstall-Kennedy Act for a study to develop methods for determining the behavior of juvenile salmonids in reservoirs. The study, consisting of a literature survey and field program, was conducted in Felton and North Fork Reservoirs on the Deschutes and Clackamas Rivers, Oregon, between September 30, 1959 and January 31, 1962. Pelton Reservoir contains chinook salmon (Oncorhynchus tshawytscha), blueback salmon (0. nerka), and summer-run steelhead trout (Salmo airdneri); North Fork Reservoir contains chinook salmon, silver salmon (0. kisutch 1 and winter-run steelhead trout. Equipment tested included SCUBA (self-contained underwater breathing apparatus) for direct observation, gill nets for capture, and sonar for indirect observation of fish." (Abstract From Author) Close

• 53. [Article] Marine distributions of chinook salmon from the West Coast of North America determined by coded wire tag recoveries

  The coded wire tag (CWT) database contains detailed information on millions of Pacific salmon Oncorhynchus spp. released from hatcheries or smolt traps and recovered in the north Pacific Ocean and its ...

  Citation × Citation Citation Abstract Copy Title: Marine distributions of chinook salmon from the West Coast of North America determined by coded wire tag recoveries Author: Weitkamp, Laurie A. The coded wire tag (CWT) database contains detailed information on millions of Pacific salmon Oncorhynchus spp. released from hatcheries or smolt traps and recovered in the north Pacific Ocean and its tributaries. I used this data set to examine the spatial and temporal variation in the marine distributions of 77 hatchery and 16 wild populations of Chinook salmon O. tshawytscha based on recoveries of an estimated 632,000 tagged salmon in coastal waters from southern California to the Bering Sea during 1979–1994 (and 1995–2004 for select hatcheries). Chinook salmon showed 12 distinct region-specific recovery patterns. Chinook salmon originating in a common freshwater region had similar marine distributions, which were distinct from those of adjacent regions. Different run types (e.g., spring, summer, and fall runs) originating in the same region exhibited variation in their marine distributions consistent with recovery at different stages of their ocean residence period. Recovery patterns were surprisingly stable across years, despite high interannual variation in ocean conditions. By contrast, ocean age influenced recovery patterns, as older fish were recovered further from their natal stream than younger fish. Although most of the CWT data used in the analysis came from hatchery fish, recoveries of tagged wild populations indicate patterns similar to those of fish from nearby hatcheries. The consistency in these findings across broad geographic areas suggests that they apply to Chinook salmon across the entire Pacific Rim. Similar findings for tagged coho salmon O. kisutch indicate that the observed patterns may apply to Pacific salmon as a whole and provide a model for other highly migratory fishes that have not benefited from such intensive tagging programs. The results also have implications for the genetic control of migration and salmon’s ability to respond to climate change. Title: Marine distributions of chinook salmon from the West Coast of North America determined by coded wire tag recoveries Author: Weitkamp, Laurie A. The coded wire tag (CWT) database contains detailed information on millions of Pacific salmon Oncorhynchus spp. released from hatcheries or smolt traps and recovered in the north Pacific Ocean and its tributaries. I used this data set to examine the spatial and temporal variation in the marine distributions of 77 hatchery and 16 wild populations of Chinook salmon O. tshawytscha based on recoveries of an estimated 632,000 tagged salmon in coastal waters from southern California to the Bering Sea during 1979–1994 (and 1995–2004 for select hatcheries). Chinook salmon showed 12 distinct region-specific recovery patterns. Chinook salmon originating in a common freshwater region had similar marine distributions, which were distinct from those of adjacent regions. Different run types (e.g., spring, summer, and fall runs) originating in the same region exhibited variation in their marine distributions consistent with recovery at different stages of their ocean residence period. Recovery patterns were surprisingly stable across years, despite high interannual variation in ocean conditions. By contrast, ocean age influenced recovery patterns, as older fish were recovered further from their natal stream than younger fish. Although most of the CWT data used in the analysis came from hatchery fish, recoveries of tagged wild populations indicate patterns similar to those of fish from nearby hatcheries. The consistency in these findings across broad geographic areas suggests that they apply to Chinook salmon across the entire Pacific Rim. Similar findings for tagged coho salmon O. kisutch indicate that the observed patterns may apply to Pacific salmon as a whole and provide a model for other highly migratory fishes that have not benefited from such intensive tagging programs. The results also have implications for the genetic control of migration and salmon’s ability to respond to climate change. Close

• 54. [Article] The effects on salmon populations of the partial elimination of fixed fishing gear on the Columbia River in 1935

  1. Six major types of commercial gear have been used to take salmon and steelhead on the Columbia River; namely, gill nets, set nets, seines, traps, fish wheels and dip nets. 2. The five important commercial ...

  Citation × Citation Citation Abstract Copy Title: The effects on salmon populations of the partial elimination of fixed fishing gear on the Columbia River in 1935 Author: Johnson, Donald R., Chapman, Wilbert McLeod, 1910-1970, Oregon. Fish Commission, Schoning, Robert W. 1. Six major types of commercial gear have been used to take salmon and steelhead on the Columbia River; namely, gill nets, set nets, seines, traps, fish wheels and dip nets. 2. The five important commercial species in the Columbia River are chinook, silver, blueback and chum salmon and steelhead trout. 3. In 1927 fish wheels were eliminated in Oregon. In 1935 fish wheels, traps, seines and set nets were eliminated in Washington. 4. The effect of the gear change in Washington in 1935 has been to increase the take in other gears, while the previous trend of total landings has not changed appreciably. 5. There is no conclusive evidence that the elimination of fixed gear in Washington increased the escapement of salmon and steelhead. 6. There is no conclusive evidence that any gear is injurious to the run except by subtracting fish from the run. 7. Measures designed to increase the escapement should apply to all gears and cover the entire life history of each species. Title: The effects on salmon populations of the partial elimination of fixed fishing gear on the Columbia River in 1935 Author: Johnson, Donald R., Chapman, Wilbert McLeod, 1910-1970, Oregon. Fish Commission, Schoning, Robert W. 1. Six major types of commercial gear have been used to take salmon and steelhead on the Columbia River; namely, gill nets, set nets, seines, traps, fish wheels and dip nets. 2. The five important commercial species in the Columbia River are chinook, silver, blueback and chum salmon and steelhead trout. 3. In 1927 fish wheels were eliminated in Oregon. In 1935 fish wheels, traps, seines and set nets were eliminated in Washington. 4. The effect of the gear change in Washington in 1935 has been to increase the take in other gears, while the previous trend of total landings has not changed appreciably. 5. There is no conclusive evidence that the elimination of fixed gear in Washington increased the escapement of salmon and steelhead. 6. There is no conclusive evidence that any gear is injurious to the run except by subtracting fish from the run. 7. Measures designed to increase the escapement should apply to all gears and cover the entire life history of each species. Close

• 55. [Article] Fish tales : salmon stories, 1945-1980

  Approximately $1 billion a year is spent on salmon in the Pacific Northwest. Spending has escalated, yet the number of wild runs placed under the protection of the Endangered Species Act has increased, ...

  Citation × Citation Citation Abstract Copy Title: Fish tales : salmon stories, 1945-1980 Author: Finley, Carmel Approximately $1 billion a year is spent on salmon in the Pacific Northwest. Spending has escalated, yet the number of wild runs placed under the protection of the Endangered Species Act has increased, creating social and political controversy. For more than 100 years, salmon management in the Pacific Northwest has evolved around a fundamental concept, that hatcheries could replace the numbers of salmon lost as the region underwent industrialization. Spending on hatcheries makes up approximately 40 percent of expenditures on Northwest salmon issues. Four new studies have identified hatcheries as one of the reasons for the decline of some wild salmon stocks. Yet hatcheries are also considered one of the most important tools for saving wild runs. This thesis examines some of the national and international forces that shaped the modern hatchery program in the Pacific Northwest. After World War II, scientists and policy makers worldwide were motivated by idealistic dreams of using science and technology to end world hunger. With the creation of factory processing ships, and the discovery of such strategically important minerals such as manganese, there was growing political pressure to protect national resources through the creation of 200- mile limits. As part of this worldwide interest in increasing the marine harvest, hatchery programs for salmon were expanded in Japan, the U.S.S.R., Canada and the United States. At the same time, human activities, including logging, mining, agriculture and urbanization, contributed to the decline of salmon in the Northwest. This thesis examines some of the national and international forces that contributed to the expansion of the hatchery system in the Pacific Northwest. Title: Fish tales : salmon stories, 1945-1980 Author: Finley, Carmel Approximately $1 billion a year is spent on salmon in the Pacific Northwest. Spending has escalated, yet the number of wild runs placed under the protection of the Endangered Species Act has increased, creating social and political controversy. For more than 100 years, salmon management in the Pacific Northwest has evolved around a fundamental concept, that hatcheries could replace the numbers of salmon lost as the region underwent industrialization. Spending on hatcheries makes up approximately 40 percent of expenditures on Northwest salmon issues. Four new studies have identified hatcheries as one of the reasons for the decline of some wild salmon stocks. Yet hatcheries are also considered one of the most important tools for saving wild runs. This thesis examines some of the national and international forces that shaped the modern hatchery program in the Pacific Northwest. After World War II, scientists and policy makers worldwide were motivated by idealistic dreams of using science and technology to end world hunger. With the creation of factory processing ships, and the discovery of such strategically important minerals such as manganese, there was growing political pressure to protect national resources through the creation of 200- mile limits. As part of this worldwide interest in increasing the marine harvest, hatchery programs for salmon were expanded in Japan, the U.S.S.R., Canada and the United States. At the same time, human activities, including logging, mining, agriculture and urbanization, contributed to the decline of salmon in the Northwest. This thesis examines some of the national and international forces that contributed to the expansion of the hatchery system in the Pacific Northwest. Close

• 56. [Article] The Willamette River Spring Chinook Sport Fishery, 1947

  "The Willamette River has the largest runs of spring chinook salmon of any tributary of the Columbia River rising in Oregon. The run to the Willamette is most unique in that the migrating fish pass up ...

  Citation × Citation Citation Abstract Copy Title: The Willamette River Spring Chinook Sport Fishery, 1947 Author: Jensen, Christopher, Johnson, Donald R. "The Willamette River has the largest runs of spring chinook salmon of any tributary of the Columbia River rising in Oregon. The run to the Willamette is most unique in that the migrating fish pass up the river through Portland, a city of several hundred thousand people, and support a large sport fishery in the metropolitan area. This river is the major tributary of the Columbia west of the Cascade Mountains and joins that river about 100 miles from the sea. Anadromous forms, other than spring chinook frequenting the Willamette, include fall chinook and silver salmon, steelhead, trout, and shad. Spring chinook populations of the Columbia have declined steadily since about 1890 and those of the Willamette have probably done likewise. An investigation is being conducted to assess the causes of the decline in Willamette spring chinook. A study of the spot fishery is part of the program." (From Introduction) Title: The Willamette River Spring Chinook Sport Fishery, 1947 Author: Jensen, Christopher, Johnson, Donald R. "The Willamette River has the largest runs of spring chinook salmon of any tributary of the Columbia River rising in Oregon. The run to the Willamette is most unique in that the migrating fish pass up the river through Portland, a city of several hundred thousand people, and support a large sport fishery in the metropolitan area. This river is the major tributary of the Columbia west of the Cascade Mountains and joins that river about 100 miles from the sea. Anadromous forms, other than spring chinook frequenting the Willamette, include fall chinook and silver salmon, steelhead, trout, and shad. Spring chinook populations of the Columbia have declined steadily since about 1890 and those of the Willamette have probably done likewise. An investigation is being conducted to assess the causes of the decline in Willamette spring chinook. A study of the spot fishery is part of the program." (From Introduction) Close

• 57. [Article] Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/jo...

  Citation × Citation Citation Abstract Copy Title: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow Author: Jacobson, Dave P., Banks, Michael A., Dill, Allen J., Kurth, Ryon, O'Malley, Kathleen G. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1752-4571. Title: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow Author: Jacobson, Dave P., Banks, Michael A., Dill, Allen J., Kurth, Ryon, O'Malley, Kathleen G. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1752-4571. Close

• 58. [Article] An application of the control chart method to the analysis of fisheries data

  In a paper now in press as a Bulletin of the U. S. Fish and Wildlife Services the writer has discussed the downward trend of the catch of Columbia River Chinook salmon since 1920 and has stated that the ...

  Citation × Citation Citation Abstract Copy Title: An application of the control chart method to the analysis of fisheries data Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 In a paper now in press as a Bulletin of the U. S. Fish and Wildlife Services the writer has discussed the downward trend of the catch of Columbia River Chinook salmon since 1920 and has stated that the decline is doubtless an indication that the runs of this species are seriously depleted. Recently the same data have been studied by means of the control chart method and the results show so clearly that the productivity has dropped to a new and much lower level that it has seemed worth while to present a brief note amplifying the discussion in the bulletin. Title: An application of the control chart method to the analysis of fisheries data Author: Oregon. Fish Commission, Rich, Willis H. (Willis Horton), 1885-1972 In a paper now in press as a Bulletin of the U. S. Fish and Wildlife Services the writer has discussed the downward trend of the catch of Columbia River Chinook salmon since 1920 and has stated that the decline is doubtless an indication that the runs of this species are seriously depleted. Recently the same data have been studied by means of the control chart method and the results show so clearly that the productivity has dropped to a new and much lower level that it has seemed worth while to present a brief note amplifying the discussion in the bulletin. Close

• 59. [Article] U.S. Demand for Imported Farmed Salmon in the Face of Science Regarding PCB Contamination

  Research Paper

  Citation × Citation Citation Abstract Copy Title: U.S. Demand for Imported Farmed Salmon in the Face of Science Regarding PCB Contamination Author: Roheim, Cathy, Sha, Sha Research Paper Title: U.S. Demand for Imported Farmed Salmon in the Face of Science Regarding PCB Contamination Author: Roheim, Cathy, Sha, Sha Research Paper Close

• 60. [Article] Innate and adaptive immune responses in migrating spring-run adult chinook salmon, Oncorhynchus tshawytscha

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Elsevier ...

  Citation × Citation Citation Abstract Copy Title: Innate and adaptive immune responses in migrating spring-run adult chinook salmon, Oncorhynchus tshawytscha Author: Schreck, Carl B., Kent, Michael L., Dolan, Brian P., Colvin, Michael E., Fisher, Kathleen M., Benda, Susan E., Peterson, James T. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/fish-and-shellfish-immunology/ Title: Innate and adaptive immune responses in migrating spring-run adult chinook salmon, Oncorhynchus tshawytscha Author: Schreck, Carl B., Kent, Michael L., Dolan, Brian P., Colvin, Michael E., Fisher, Kathleen M., Benda, Susan E., Peterson, James T. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/fish-and-shellfish-immunology/ Close

• 61. [Article] Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths

  Published March 1989. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog...

  Citation × Citation Citation Abstract Copy Title: Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths Author: Hankin, David G., Oregon State University. Extension Service, Oregon. Fish Division, Nicholas, Jay W., Oregon. Dept. of Fish and Wildlife. Research and Development Section Published March 1989. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog Title: Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths Author: Hankin, David G., Oregon State University. Extension Service, Oregon. Fish Division, Nicholas, Jay W., Oregon. Dept. of Fish and Wildlife. Research and Development Section Published March 1989. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog Close

• 62. [Article] Private salmon hatcheries in Oregon, 1986

  Reports on private Chinook, chum and coho salmon hatcheries (PSHs)in Oregon in the mid-1980s. Includes a map of hatchery operation sites, and statistical tables. Oregon State University's facility at ...

  Citation × Citation Citation Abstract Copy Title: Private salmon hatcheries in Oregon, 1986 Author: Oregon. Fish Division, Cummings, T. Edwin, Oregon. Dept. of Fish and Wildlife Reports on private Chinook, chum and coho salmon hatcheries (PSHs)in Oregon in the mid-1980s. Includes a map of hatchery operation sites, and statistical tables. Oregon State University's facility at Whiskey Creek, Netarts Bay, was back in operation. Suspected impacts of a private hatchery on the run of coho salmon on the Yaquina River are discussed. "In this report I will discuss the development of the PSH regulations, status of current permits, those which have been terminated, applications which were turned down, and the outlook for the future. Various tables of supporting or often requested information are attached to this report." (from the Introduction) Title: Private salmon hatcheries in Oregon, 1986 Author: Oregon. Fish Division, Cummings, T. Edwin, Oregon. Dept. of Fish and Wildlife Reports on private Chinook, chum and coho salmon hatcheries (PSHs)in Oregon in the mid-1980s. Includes a map of hatchery operation sites, and statistical tables. Oregon State University's facility at Whiskey Creek, Netarts Bay, was back in operation. Suspected impacts of a private hatchery on the run of coho salmon on the Yaquina River are discussed. "In this report I will discuss the development of the PSH regulations, status of current permits, those which have been terminated, applications which were turned down, and the outlook for the future. Various tables of supporting or often requested information are attached to this report." (from the Introduction) Close

• 63. [Article] Contribution of subyearling estuarine migrant coho salmon (Oncorhynchus kisutch) to spawning populations on the southern Oregon coast

  The typical coho salmon life history has been characterized by juvenile fish that spend their entire first year in freshwater habitats before migrating into estuaries as smolts. However, reports of early ...

  Citation × Citation Citation Abstract Copy Title: Contribution of subyearling estuarine migrant coho salmon (Oncorhynchus kisutch) to spawning populations on the southern Oregon coast Author: Nordholm, Katherine E. The typical coho salmon life history has been characterized by juvenile fish that spend their entire first year in freshwater habitats before migrating into estuaries as smolts. However, reports of early migrating coho fry (age 0), including migration downstream to estuarine habitats, date back to the 1960s. Until a few years ago, these individuals were considered to be displaced surplus fish with low chances of survival. Recent studies have suggested that subyearling estuarine migrating coho salmon could be an alternative life history in coastal populations, but their return as jacks or mature adults needed to be documented for this life history to be considered a viable strategy. The goal of our study was to track the return of spawning coho salmon that had been individually tagged in either estuarine or riverine nursery habitats, and determine return percentages for each life history strategy as well as independently verify the presence of subyearling estuarine migrating coho salmon through otolith analysis on spawning populations. We used Passive Integrated Transponder (PIT) tags to identify individual fish as they passed through a series of antennas deployed in two coastal lowland streams on the southern Oregon coast. Percentage return of estuary tagged parr (fish ≥ 60 mm tagged in spring and summer of their first year) was variable between years and streams. For the 2010 return year, subyearling estuarine migrants was 2.5 times higher than stream residents in Palouse Creek. Fork length at estuary entrance was reconstructed for one return year of spawning fish based on otolith Sr:Ca and Br:Ca. Four main life history strategies were identified based on their fork length at time of estuary/ocean entrance: early migrating fry (< 60 mm fork length), early migrating parr (60 - 70 mm fork length), early migrating parr that returned to freshwater before migrating as yearlings ("nomads"), and yearling migrating smolts (> 70 mm fork length). Overall, 30% (Larson Creek) to 42% (Palouse Creek) of the 2009 spawning run was made up of fish that displayed evidence of estuarine residence during their first year. This study confirms that subyearling estuarine migrating coho salmon survive to reproductive age and contribute to subsequent generations. The survival of this life history type likely varies between years with changing ocean and stream conditions. It is hypothesized that their life history serves as a "bet hedging" strategy that supports coastal populations in years of poor stream conditions. In the face of rising sea levels, this life history may represent a key to the future viability of coho salmon stocks in coastal watersheds. Title: Contribution of subyearling estuarine migrant coho salmon (Oncorhynchus kisutch) to spawning populations on the southern Oregon coast Author: Nordholm, Katherine E. The typical coho salmon life history has been characterized by juvenile fish that spend their entire first year in freshwater habitats before migrating into estuaries as smolts. However, reports of early migrating coho fry (age 0), including migration downstream to estuarine habitats, date back to the 1960s. Until a few years ago, these individuals were considered to be displaced surplus fish with low chances of survival. Recent studies have suggested that subyearling estuarine migrating coho salmon could be an alternative life history in coastal populations, but their return as jacks or mature adults needed to be documented for this life history to be considered a viable strategy. The goal of our study was to track the return of spawning coho salmon that had been individually tagged in either estuarine or riverine nursery habitats, and determine return percentages for each life history strategy as well as independently verify the presence of subyearling estuarine migrating coho salmon through otolith analysis on spawning populations. We used Passive Integrated Transponder (PIT) tags to identify individual fish as they passed through a series of antennas deployed in two coastal lowland streams on the southern Oregon coast. Percentage return of estuary tagged parr (fish ≥ 60 mm tagged in spring and summer of their first year) was variable between years and streams. For the 2010 return year, subyearling estuarine migrants was 2.5 times higher than stream residents in Palouse Creek. Fork length at estuary entrance was reconstructed for one return year of spawning fish based on otolith Sr:Ca and Br:Ca. Four main life history strategies were identified based on their fork length at time of estuary/ocean entrance: early migrating fry (< 60 mm fork length), early migrating parr (60 - 70 mm fork length), early migrating parr that returned to freshwater before migrating as yearlings ("nomads"), and yearling migrating smolts (> 70 mm fork length). Overall, 30% (Larson Creek) to 42% (Palouse Creek) of the 2009 spawning run was made up of fish that displayed evidence of estuarine residence during their first year. This study confirms that subyearling estuarine migrating coho salmon survive to reproductive age and contribute to subsequent generations. The survival of this life history type likely varies between years with changing ocean and stream conditions. It is hypothesized that their life history serves as a "bet hedging" strategy that supports coastal populations in years of poor stream conditions. In the face of rising sea levels, this life history may represent a key to the future viability of coho salmon stocks in coastal watersheds. Close

• 64. [Article] Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska

  The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study ...

  Citation × Citation Citation Abstract Copy Title: Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska Author: Tsunoda, Setsuwo The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study were to describe the movements of sockeye salmon on the spawning ground of an entire small stream, to determine factors related to such movements, and to consider the significance of the movements to the species. The spawning run was inventoried at a weir located near the mouth of the tributary. Portions of the run were sampled as they immigrated, and the sampled fish were tagged to enable subsequent identification of individual fish on the spawning ground. Following the initial immigration, daily observations were made to ascertain the location of all fish and the activities of the tagged fish. Tagging had no material effect on either dispersal in the stream or pairing of spawners. The spawning run totalled 2,495; the ratio of males to females was 2.27:1.00, The run consisted preponderantly of males that had spent two winters in the ocean (two ocean-years) and females that had spent three winters in the ocean (three ocean-years). They entered the tributary over a period of 14 days in two waves separated by an interval of three days. The overall median life span in the stream was 12 days in the first wave and eight days in the second wave. The difference was primarily due to predation on the salmon by the brown bear (Ursus arctos). The average female established a redd in 1.4 days; thereafter the females rarely moved far from their redds. The average male required 2.3 days to establish himself in a spawning locale; thereafter most males remained within a relatively small area. The males showed a decided tendency to remain in areas with a high density of females on redds. Fewer females than males overshot their spawning sites. No relation was found between the movements of spawners and either variations of water level or surface water temperature of the stream. Bear predation disrupted spawning activities only locally and temporarily. Males of three ocean-years paired with more females per male than did males of one or two ocean-years. But because of their greater numbers two-ocean-year males participated in more spawnings than did three-ocean-year males. The mean duration of pairing of a particular male with a particular female on a redd was 1.25 days. I concluded that homing within the tributary did not occur; therefore its spawning stock must be a homogeneous unit. The role of the male is primarily one of fertilization of the eggs, not one of defense of territory. Because of the abnormally high ratio of males to females, competition between males for spawning partners resulted in most males of one or two ocean-years being relegated to attend females paired with larger males. Conflict among the males was apparently largely confined within two separate classes of males: males 50 cm or shorter jockeyed among themselves for seemingly preferred positions of attendance next to a pair on a redd, while males 51 cm or longer competed for spawning partners. The polygamous habit in sockeye salmon usually results in a seeming excess of males on the spawning ground beyond the number required to fertilize the eggs. I propose that this "surplus" of males provides a safety factor in times of low numbers in a stock and the competition needed to disperse the males among the available females; both provisions insure fertilization of the available eggs, However, crucial experiments need to be done on an entire population of sockeye salmon with artificially reduced ratios of males to females to determine whether the movements of the spawners would result in an efficiency of egg fertilization sufficient to make harvesting of the "surplus" males feasible. Title: Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska Author: Tsunoda, Setsuwo The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study were to describe the movements of sockeye salmon on the spawning ground of an entire small stream, to determine factors related to such movements, and to consider the significance of the movements to the species. The spawning run was inventoried at a weir located near the mouth of the tributary. Portions of the run were sampled as they immigrated, and the sampled fish were tagged to enable subsequent identification of individual fish on the spawning ground. Following the initial immigration, daily observations were made to ascertain the location of all fish and the activities of the tagged fish. Tagging had no material effect on either dispersal in the stream or pairing of spawners. The spawning run totalled 2,495; the ratio of males to females was 2.27:1.00, The run consisted preponderantly of males that had spent two winters in the ocean (two ocean-years) and females that had spent three winters in the ocean (three ocean-years). They entered the tributary over a period of 14 days in two waves separated by an interval of three days. The overall median life span in the stream was 12 days in the first wave and eight days in the second wave. The difference was primarily due to predation on the salmon by the brown bear (Ursus arctos). The average female established a redd in 1.4 days; thereafter the females rarely moved far from their redds. The average male required 2.3 days to establish himself in a spawning locale; thereafter most males remained within a relatively small area. The males showed a decided tendency to remain in areas with a high density of females on redds. Fewer females than males overshot their spawning sites. No relation was found between the movements of spawners and either variations of water level or surface water temperature of the stream. Bear predation disrupted spawning activities only locally and temporarily. Males of three ocean-years paired with more females per male than did males of one or two ocean-years. But because of their greater numbers two-ocean-year males participated in more spawnings than did three-ocean-year males. The mean duration of pairing of a particular male with a particular female on a redd was 1.25 days. I concluded that homing within the tributary did not occur; therefore its spawning stock must be a homogeneous unit. The role of the male is primarily one of fertilization of the eggs, not one of defense of territory. Because of the abnormally high ratio of males to females, competition between males for spawning partners resulted in most males of one or two ocean-years being relegated to attend females paired with larger males. Conflict among the males was apparently largely confined within two separate classes of males: males 50 cm or shorter jockeyed among themselves for seemingly preferred positions of attendance next to a pair on a redd, while males 51 cm or longer competed for spawning partners. The polygamous habit in sockeye salmon usually results in a seeming excess of males on the spawning ground beyond the number required to fertilize the eggs. I propose that this "surplus" of males provides a safety factor in times of low numbers in a stock and the competition needed to disperse the males among the available females; both provisions insure fertilization of the available eggs, However, crucial experiments need to be done on an entire population of sockeye salmon with artificially reduced ratios of males to females to determine whether the movements of the spawners would result in an efficiency of egg fertilization sufficient to make harvesting of the "surplus" males feasible. Close

• 65. [Article] Tuberculosis in Pacific salmon and steelhead trout

  Tuberculosis in salmonoid fishes was first observed in the 1952 run of fall chinook salmon (Oncorhynchus tshawytscha) returning to the Bonneville Hatchery of the Oregon Fish Commission. In the studies ...

  Citation × Citation Citation Abstract Copy Title: Tuberculosis in Pacific salmon and steelhead trout Author: Ordal, Erling Josef, 1906-, Oregon. Fish Commission, Wood, James W. Tuberculosis in salmonoid fishes was first observed in the 1952 run of fall chinook salmon (Oncorhynchus tshawytscha) returning to the Bonneville Hatchery of the Oregon Fish Commission. In the studies reported here, tuberculosis was found not only in adult spring chinook but in silver salmon (0. kisutch), blueback salmon (0. nerka), and in anadromous and resident strains of rainbow trout (Salmo gairdnerii). Advanced tuberculosis was found in salmonoid fishes held in fresh water for two years or longer, as well as in adults returning from the sea. Lesions were most frequently observed in the liver, and varied in size from small miliary tubercles to huge necrotic areas, filled with characteristic acid-fast bacilli. The typical bacilli were found in stained smears from the kidney, heart, musculature, brain, intestines, pyloric caeca, and roe of infected fish. The disease was originally observed in sexually-underdeveloped fish, and there is indication that it interferes with sexual maturation. It was found that tuberculosis in marked salmon known to be of hatchery origin was extremely high - in some cases 100 percent. Tuberculosis was absent in the small number of silver and chum salmon examined which were known to be the progeny from natural spawning. It is suggested that dissemination of the disease may be due to fish-cultural practices such as the feeding of untreated carcasses and the viscera from tuberculous fish. Since acid-fast bacilli were found in the roe of some fish, it is also suggested that the disease may be transmitted to healthy eggs during the process of fertilization. Tuberculous adult spring chinook were found less capable of surviving to maturity after they reached the spawning grounds than were non-infected fish. It is likely that tuberculosis also influences the ability of salmon to survive during earlier stages of their life history. The incidence of tuberculosis in adult spring chinook entering the Dexter holding ponds on the Middle Fork of the Willamette River in 1955 and 1956 was 8.7 and 6.1 percent, respectively. The increase in incidence to 58.8 percent in 1957 is attributed to the increased dependency of the run on artificial propagation necessitated by the construction of Lookout Point Dam. Among chinook caught in the Columbia River gill-net fishery in. February and in May 1956, 12.3 and 10.5 percent, respectively, of those examined were tuberculous. Although these are spring chinook, it is believed that hatchery reared fall chinook also entered the catch, especially during May, and may have contributed to the number of tuberculous fish taken. Title: Tuberculosis in Pacific salmon and steelhead trout Author: Ordal, Erling Josef, 1906-, Oregon. Fish Commission, Wood, James W. Tuberculosis in salmonoid fishes was first observed in the 1952 run of fall chinook salmon (Oncorhynchus tshawytscha) returning to the Bonneville Hatchery of the Oregon Fish Commission. In the studies reported here, tuberculosis was found not only in adult spring chinook but in silver salmon (0. kisutch), blueback salmon (0. nerka), and in anadromous and resident strains of rainbow trout (Salmo gairdnerii). Advanced tuberculosis was found in salmonoid fishes held in fresh water for two years or longer, as well as in adults returning from the sea. Lesions were most frequently observed in the liver, and varied in size from small miliary tubercles to huge necrotic areas, filled with characteristic acid-fast bacilli. The typical bacilli were found in stained smears from the kidney, heart, musculature, brain, intestines, pyloric caeca, and roe of infected fish. The disease was originally observed in sexually-underdeveloped fish, and there is indication that it interferes with sexual maturation. It was found that tuberculosis in marked salmon known to be of hatchery origin was extremely high - in some cases 100 percent. Tuberculosis was absent in the small number of silver and chum salmon examined which were known to be the progeny from natural spawning. It is suggested that dissemination of the disease may be due to fish-cultural practices such as the feeding of untreated carcasses and the viscera from tuberculous fish. Since acid-fast bacilli were found in the roe of some fish, it is also suggested that the disease may be transmitted to healthy eggs during the process of fertilization. Tuberculous adult spring chinook were found less capable of surviving to maturity after they reached the spawning grounds than were non-infected fish. It is likely that tuberculosis also influences the ability of salmon to survive during earlier stages of their life history. The incidence of tuberculosis in adult spring chinook entering the Dexter holding ponds on the Middle Fork of the Willamette River in 1955 and 1956 was 8.7 and 6.1 percent, respectively. The increase in incidence to 58.8 percent in 1957 is attributed to the increased dependency of the run on artificial propagation necessitated by the construction of Lookout Point Dam. Among chinook caught in the Columbia River gill-net fishery in. February and in May 1956, 12.3 and 10.5 percent, respectively, of those examined were tuberculous. Although these are spring chinook, it is believed that hatchery reared fall chinook also entered the catch, especially during May, and may have contributed to the number of tuberculous fish taken. Close

• 66. [Article] Uncertainty, market disequilibrium and the firm's decision process : applications to the Pacific salmon market

  The Pacific salmon market may often be characterized by disequilibrium conditions and less than perfect information. Thus the study of the decision-making behavior, especially short-run pricing, of wholesale ...

  Citation × Citation Citation Abstract Copy Title: Uncertainty, market disequilibrium and the firm's decision process : applications to the Pacific salmon market Author: Lent, Rebecca J. The Pacific salmon market may often be characterized by disequilibrium conditions and less than perfect information. Thus the study of the decision-making behavior, especially short-run pricing, of wholesale market participants in this industry requires the use of alternative models to the conventional, price-taking, perfect competition model of the firm. This study makes use of concepts advanced in the previous literature on disequilibrium markets and imperfect information, as well as known characteristics of the Pacific- salmon industry, to hypothesize a model of decision-making by buyers and sellers. Sellers determine an optimal asking price based on various indicators to the firm of where its unknown, but downward sloping, demand curve lies, as well as on costs. The reaction of buyers to the asking price is specified, as is implicitly the reaction, in turn, of sellers to buyers' decisions. The model is estimated empirically with the use of weekly data from invoices of wholesale transactions of Pacific salmon for a number of firms. These data represent a unique and rich source of information to the researcher examining decision-making in the firm. Additional information, such as dates of fishing seasons and landings, costs to processors and certain proxy variables, assist in the analysis of the invoice data. Empirical estimation of the model is performed on nineteen subsets of the data, classified by type of salmon product and by firm. The results for the asking price equation reveal that for certain cases seller behavior is consistent with the model of price-searching behavior developed here. Furthermore, these results support previous studies which hypothesize the role of various indicators in the decision-making of the seller. In the case of the buyers' responses to the asking price, however, the model does not appear to be capturing some important factors. Some of the probable issues not incorporated are discussed. Ultimately, then, this research is designed to provide a better understanding of the relationship between decision-making at the firm level and associated market processes in a particular setting: the U.S. Pacific salmon industry. Title: Uncertainty, market disequilibrium and the firm's decision process : applications to the Pacific salmon market Author: Lent, Rebecca J. The Pacific salmon market may often be characterized by disequilibrium conditions and less than perfect information. Thus the study of the decision-making behavior, especially short-run pricing, of wholesale market participants in this industry requires the use of alternative models to the conventional, price-taking, perfect competition model of the firm. This study makes use of concepts advanced in the previous literature on disequilibrium markets and imperfect information, as well as known characteristics of the Pacific- salmon industry, to hypothesize a model of decision-making by buyers and sellers. Sellers determine an optimal asking price based on various indicators to the firm of where its unknown, but downward sloping, demand curve lies, as well as on costs. The reaction of buyers to the asking price is specified, as is implicitly the reaction, in turn, of sellers to buyers' decisions. The model is estimated empirically with the use of weekly data from invoices of wholesale transactions of Pacific salmon for a number of firms. These data represent a unique and rich source of information to the researcher examining decision-making in the firm. Additional information, such as dates of fishing seasons and landings, costs to processors and certain proxy variables, assist in the analysis of the invoice data. Empirical estimation of the model is performed on nineteen subsets of the data, classified by type of salmon product and by firm. The results for the asking price equation reveal that for certain cases seller behavior is consistent with the model of price-searching behavior developed here. Furthermore, these results support previous studies which hypothesize the role of various indicators in the decision-making of the seller. In the case of the buyers' responses to the asking price, however, the model does not appear to be capturing some important factors. Some of the probable issues not incorporated are discussed. Ultimately, then, this research is designed to provide a better understanding of the relationship between decision-making at the firm level and associated market processes in a particular setting: the U.S. Pacific salmon industry. Close

• 67. [Article] Regions to streams : spatial and temporal variation in stream occupancy patterns of coho salmon (Oncorhynchus kisutch) on the Oregon coast

  Aquatic ecological investigation is expanding to encompass considerations of multiple scales across large landscapes. Much of the analysis included in this work focuses specifically on coho salmon (Oncorhynchus ...

  Citation × Citation Citation Abstract Copy Title: Regions to streams : spatial and temporal variation in stream occupancy patterns of coho salmon (Oncorhynchus kisutch) on the Oregon coast Author: Flitcroft, Rebecca L. Aquatic ecological investigation is expanding to encompass considerations of multiple scales across large landscapes. Much of the analysis included in this work focuses specifically on coho salmon (Oncorhynchus kisutch) in multiple subbasins on the Oregon coast. Coho salmon were chosen for an investigation of spatial scales, network connections, and life history stages due to their broad distribution on the Oregon coast, and abundant data describing their distribution, habitat needs, behavior, and survival. Chapter 2 introduces dynamic network topology (DNT) as a framework for analysis and interpretation of aquatic obligate species. DNT is based on the premise that in-stream habitats change in form and organization over time, and native aquatic species are adapted to those changes through movement and life history diversity. Chapter 3 analyzes juvenile coho salmon density and stream network occupancy at three spatial scales (site, patch, and subbasin). The site scale analysis indicated that combining network and traditional in-stream habitat metrics (i.e., substrate and habitat juxtaposition variables) are most effective at describing juvenile coho salmon density. Patch sizes of juvenile coho salmon were defined using variograms. Variogram shape indicated that a nested spatial structure may be present in larger subbasins, indicating overlapping patterns of juvenile stream use. At the subbasin scale, stream network occupancy by juvenile coho salmon was shown to vary over time within subbasins, and appeared to increase or decrease similarly to the size of the adult spawning run. In chapter 3, two-tier Bayesian hierarchical models were applied to adult (subbasin and basin scales) and juvenile (site and subbasin scales) coho salmon in an attempt to combine spatial scales that might be influential at each life history stage. The best fitting adult model included the percent of large trees in the riparian zone at the subbasin scale with mean annual precipitation at the basin scale. The best fitting juvenile model included three variables, percent sand, stream order, and network distance to spawning habitat which mirrors the result of modeling efforts in Chapter 3. Multiple spatial scales and the framework of a stream network were informative at detecting patterns and interactions among scales and life history stages of coho salmon. Title: Regions to streams : spatial and temporal variation in stream occupancy patterns of coho salmon (Oncorhynchus kisutch) on the Oregon coast Author: Flitcroft, Rebecca L. Aquatic ecological investigation is expanding to encompass considerations of multiple scales across large landscapes. Much of the analysis included in this work focuses specifically on coho salmon (Oncorhynchus kisutch) in multiple subbasins on the Oregon coast. Coho salmon were chosen for an investigation of spatial scales, network connections, and life history stages due to their broad distribution on the Oregon coast, and abundant data describing their distribution, habitat needs, behavior, and survival. Chapter 2 introduces dynamic network topology (DNT) as a framework for analysis and interpretation of aquatic obligate species. DNT is based on the premise that in-stream habitats change in form and organization over time, and native aquatic species are adapted to those changes through movement and life history diversity. Chapter 3 analyzes juvenile coho salmon density and stream network occupancy at three spatial scales (site, patch, and subbasin). The site scale analysis indicated that combining network and traditional in-stream habitat metrics (i.e., substrate and habitat juxtaposition variables) are most effective at describing juvenile coho salmon density. Patch sizes of juvenile coho salmon were defined using variograms. Variogram shape indicated that a nested spatial structure may be present in larger subbasins, indicating overlapping patterns of juvenile stream use. At the subbasin scale, stream network occupancy by juvenile coho salmon was shown to vary over time within subbasins, and appeared to increase or decrease similarly to the size of the adult spawning run. In chapter 3, two-tier Bayesian hierarchical models were applied to adult (subbasin and basin scales) and juvenile (site and subbasin scales) coho salmon in an attempt to combine spatial scales that might be influential at each life history stage. The best fitting adult model included the percent of large trees in the riparian zone at the subbasin scale with mean annual precipitation at the basin scale. The best fitting juvenile model included three variables, percent sand, stream order, and network distance to spawning habitat which mirrors the result of modeling efforts in Chapter 3. Multiple spatial scales and the framework of a stream network were informative at detecting patterns and interactions among scales and life history stages of coho salmon. Close

• 68. [Article] Riverscape Patterns among Years of Juvenile Coho Salmon in Midcoastal Oregon: Implications for Conservation

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor ...

  Citation × Citation Citation Abstract Copy Title: Riverscape Patterns among Years of Juvenile Coho Salmon in Midcoastal Oregon: Implications for Conservation Author: Reeves, G., Flitcroft, R., Snyder, J., Burnett, K., Ganio, L. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis Inc. on behalf of the American Fisheries Society and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uxn53fPTmHs. Title: Riverscape Patterns among Years of Juvenile Coho Salmon in Midcoastal Oregon: Implications for Conservation Author: Reeves, G., Flitcroft, R., Snyder, J., Burnett, K., Ganio, L. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Taylor & Francis Inc. on behalf of the American Fisheries Society and can be found at: http://www.tandfonline.com/toc/utaf20/current#.Uxn53fPTmHs. Close

• 69. [Article] Species Extinction and Cultural Arrogance: The Perils of Ignoring History

  For more than a century, politicians, newspaper editors, tate and federal fisheries managers, and their various constituencies with an interest in salmon have complained,lobbied and petitioned, sought ...

  Citation × Citation Citation Abstract Copy Title: Species Extinction and Cultural Arrogance: The Perils of Ignoring History Author: Robbins, William G. Year: 2001 For more than a century, politicians, newspaper editors, tate and federal fisheries managers, and their various constituencies with an interest in salmon have complained,lobbied and petitioned, sought legislative relief, and studied to near extinction the declining runs of the Pacific Northwest’s anadromous fish runs. All to no avail, of course. Management efforts have failed; the attempt to the establish reliable, predictive models has failed; massive federal expenditures to rescue crashing stocks have failed; and endeavors to achieve consensus about future policymaking have failed. And today one can add to the now familiar story of extinct and endangered salmon, similar tales about ocean groundfish, newly impoverished fishing communities, reductions in fleet size, and more federal bailouts. What is fascinating in the unveiling of this most recent story is the sense of history repeating itself as commercial fishers shift from one species to the next. Title: Species Extinction and Cultural Arrogance: The Perils of Ignoring History Author: Robbins, William G. Year: 2001 For more than a century, politicians, newspaper editors, tate and federal fisheries managers, and their various constituencies with an interest in salmon have complained,lobbied and petitioned, sought legislative relief, and studied to near extinction the declining runs of the Pacific Northwest’s anadromous fish runs. All to no avail, of course. Management efforts have failed; the attempt to the establish reliable, predictive models has failed; massive federal expenditures to rescue crashing stocks have failed; and endeavors to achieve consensus about future policymaking have failed. And today one can add to the now familiar story of extinct and endangered salmon, similar tales about ocean groundfish, newly impoverished fishing communities, reductions in fleet size, and more federal bailouts. What is fascinating in the unveiling of this most recent story is the sense of history repeating itself as commercial fishers shift from one species to the next. Close

• 70. [Article] Distribution, Stock Composition and Timing, and Tagging Response of Wild Chinook Salmon Returning to a Large, Free-Flowing River Basin

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries ...

  Citation × Citation Citation Abstract Copy Title: Distribution, Stock Composition and Timing, and Tagging Response of Wild Chinook Salmon Returning to a Large, Free-Flowing River Basin Author: Schreck, Carl B., Spencer, Ted R., Eiler, John H., Driscoll, Richard J., Masuda, Michele M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/loi/utaf20#.VLRgimN_t8E. Title: Distribution, Stock Composition and Timing, and Tagging Response of Wild Chinook Salmon Returning to a Large, Free-Flowing River Basin Author: Schreck, Carl B., Spencer, Ted R., Eiler, John H., Driscoll, Richard J., Masuda, Michele M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/loi/utaf20#.VLRgimN_t8E. Close

• 71. [Article] Age and growth study of Tillamook Bay chum salmon (Oncorhynchus keta)

  Ages were determined for 65 fish from the 1947 run and for 287 fish from the 1949 run. In 1947 the percentage composition by age was as follows: 32.3 percent 3-year-old fish, 66.2 percent 4-year-old fish, ...

  Citation × Citation Citation Abstract Copy Title: Age and growth study of Tillamook Bay chum salmon (Oncorhynchus keta) Author: Henry, Kenneth A., Oregon. Fish Commission Ages were determined for 65 fish from the 1947 run and for 287 fish from the 1949 run. In 1947 the percentage composition by age was as follows: 32.3 percent 3-year-old fish, 66.2 percent 4-year-old fish, and 1.5 percent 5-year-old fish. An approximate 95 percent confidence interval for the true proportion of 4-year-old fish was 54.7 to 77.7 percent. In 1949 the percentage composition by age was as follows: 5.2 percent 3-year-old fish, 94.4 percent 4-year-old fish, and 0.4 percent 5-year-old fish. An approximate 95 percent confidence interval for the true proportion of 4-year-old fish in 1949 was 91.7 to 97.1 percent. Sex ratios during the course of the run were computed. It appeared that during the latter part of October there were significantly more males than females in the catch. During November the number of males and females tended to be nearly equal. Finally, during the first part of December there were more females than males in the catch. Growth for the earlier ages was determined by analyzing the growth of the scales and then assuming that scale growth was proportionate to fish growth throughout life. It appeared that the greatest absolute increase in length occurred in the first year of life, and that the greatest absolute increase in weight occurred during the last year of life. Length-weight equations were computed for both the males and the females. When tested by means of a t-test, these equations proved to be significantly different. These equations are: for the males W = 0.000234 [superscript L3.19370]; for the females W = 0.000430 [superscript L 3.01479]. In comparing Tillamook Bay chum salmon with chum salmon from other localities, it was observed that chums of like age decrease in average length from south to north. Tillamook Bay chums do not follow the tendency for the percentage of younger fish to decrease from south to north. Finally, there are limitations to some of the results determined in the study because of the assumptions upon which these results are based. The principal limitation is the small amount of data available. Furthermore, the following assumptions were made, and if they were not true, they could invalidate the results obtained: (1) fish length increases in direct proportion to scale growth; (2) the samples used in this study do not represent an abnormal year and do represent the populations sampled; (3) ages of these fish can be determined from their scales; and (4) that the sexes can be determined by their external characteristics. Title: Age and growth study of Tillamook Bay chum salmon (Oncorhynchus keta) Author: Henry, Kenneth A., Oregon. Fish Commission Ages were determined for 65 fish from the 1947 run and for 287 fish from the 1949 run. In 1947 the percentage composition by age was as follows: 32.3 percent 3-year-old fish, 66.2 percent 4-year-old fish, and 1.5 percent 5-year-old fish. An approximate 95 percent confidence interval for the true proportion of 4-year-old fish was 54.7 to 77.7 percent. In 1949 the percentage composition by age was as follows: 5.2 percent 3-year-old fish, 94.4 percent 4-year-old fish, and 0.4 percent 5-year-old fish. An approximate 95 percent confidence interval for the true proportion of 4-year-old fish in 1949 was 91.7 to 97.1 percent. Sex ratios during the course of the run were computed. It appeared that during the latter part of October there were significantly more males than females in the catch. During November the number of males and females tended to be nearly equal. Finally, during the first part of December there were more females than males in the catch. Growth for the earlier ages was determined by analyzing the growth of the scales and then assuming that scale growth was proportionate to fish growth throughout life. It appeared that the greatest absolute increase in length occurred in the first year of life, and that the greatest absolute increase in weight occurred during the last year of life. Length-weight equations were computed for both the males and the females. When tested by means of a t-test, these equations proved to be significantly different. These equations are: for the males W = 0.000234 [superscript L3.19370]; for the females W = 0.000430 [superscript L 3.01479]. In comparing Tillamook Bay chum salmon with chum salmon from other localities, it was observed that chums of like age decrease in average length from south to north. Tillamook Bay chums do not follow the tendency for the percentage of younger fish to decrease from south to north. Finally, there are limitations to some of the results determined in the study because of the assumptions upon which these results are based. The principal limitation is the small amount of data available. Furthermore, the following assumptions were made, and if they were not true, they could invalidate the results obtained: (1) fish length increases in direct proportion to scale growth; (2) the samples used in this study do not represent an abnormal year and do represent the populations sampled; (3) ages of these fish can be determined from their scales; and (4) that the sexes can be determined by their external characteristics. Close

• 72. [Article] Cormorant harassment to protect juvenile salmonids in Tillamook County, Oregon

  The goal of the Oregon Plan is to restore wild coho and wild steelhead runs. Under the federal Endangered Species Act, wild coho salmon along the Oregon Coast are listed as Threatened and wild Oregon Coast ...

  Citation × Citation Citation Abstract Copy Title: Cormorant harassment to protect juvenile salmonids in Tillamook County, Oregon Author: Bayer, Range D., 1947- The goal of the Oregon Plan is to restore wild coho and wild steelhead runs. Under the federal Endangered Species Act, wild coho salmon along the Oregon Coast are listed as Threatened and wild Oregon Coast steelhead are a candidate for listing. Although cormorants have been hazed at the Nehalem Estuary for at least 10 years and at the Tillamook and Nestucca Estuaries for at least three years, spawning ground counts of wild coho salmon, winter steelhead, and fall chinook have averaged less since hazing began. Thus, hazing does not appear to be useful in recovering wild salmonids. Hazing is not correlated with consistently improved hatchery returns. The survival of Coded Wire Tag marked coho smolts at the Nehalem was about the same whether hazing occurred or not, the percent return for coho smolts was not significantly greater at the hazed Nehalem than at the nonhazed Salmon River, and the number of returning adult coho salmon was significantly greater with hazing at the Nehalem hatchery but not at the Trask hatchery in the Tillamook Basin. For winter steelhead, the number of returning adults to the Nehalem and jacks to the Cedar Creek hatchery in the Nestucca Basin did not increase significantly with hazing, but the number of jacks returning to the Nehalem did. Changes in fisheries subsequent to hazing are mixed. Coho catches increased with hazing at the Nehalem but not at the Tillamook Basin. Nehalem steelhead catches averaged less with hazing, but chinook fisheries have grown. However, the increase in chinook catches occurred as the number of wild chinook at spawning areas declined, so the larger catch may be a consequence of a greater harvest of wild chinook rather than hazing. Returns may not have increased with hazing because it was ineffective in substantially reducing predation, because smolts saved by hazing died anyway, or because other factors such as unfavorable ocean conditions may have been much more important in affecting smolt survival than hazing. In any case, hazing does not appear to be a panacea for salmonid recovery, and it has costs. During 1996-1999, the Oregon Legislature spent $100,000 for cormorant hazing, and a biological cost of hazing is the disturbance of wildlife other than cormorants. Title: Cormorant harassment to protect juvenile salmonids in Tillamook County, Oregon Author: Bayer, Range D., 1947- The goal of the Oregon Plan is to restore wild coho and wild steelhead runs. Under the federal Endangered Species Act, wild coho salmon along the Oregon Coast are listed as Threatened and wild Oregon Coast steelhead are a candidate for listing. Although cormorants have been hazed at the Nehalem Estuary for at least 10 years and at the Tillamook and Nestucca Estuaries for at least three years, spawning ground counts of wild coho salmon, winter steelhead, and fall chinook have averaged less since hazing began. Thus, hazing does not appear to be useful in recovering wild salmonids. Hazing is not correlated with consistently improved hatchery returns. The survival of Coded Wire Tag marked coho smolts at the Nehalem was about the same whether hazing occurred or not, the percent return for coho smolts was not significantly greater at the hazed Nehalem than at the nonhazed Salmon River, and the number of returning adult coho salmon was significantly greater with hazing at the Nehalem hatchery but not at the Trask hatchery in the Tillamook Basin. For winter steelhead, the number of returning adults to the Nehalem and jacks to the Cedar Creek hatchery in the Nestucca Basin did not increase significantly with hazing, but the number of jacks returning to the Nehalem did. Changes in fisheries subsequent to hazing are mixed. Coho catches increased with hazing at the Nehalem but not at the Tillamook Basin. Nehalem steelhead catches averaged less with hazing, but chinook fisheries have grown. However, the increase in chinook catches occurred as the number of wild chinook at spawning areas declined, so the larger catch may be a consequence of a greater harvest of wild chinook rather than hazing. Returns may not have increased with hazing because it was ineffective in substantially reducing predation, because smolts saved by hazing died anyway, or because other factors such as unfavorable ocean conditions may have been much more important in affecting smolt survival than hazing. In any case, hazing does not appear to be a panacea for salmonid recovery, and it has costs. During 1996-1999, the Oregon Legislature spent $100,000 for cormorant hazing, and a biological cost of hazing is the disturbance of wildlife other than cormorants. Close

• 73. [Article] Oregon State Game Commission bulletin; Vol.18 No.11 (November 1963)

  Contents: "Let's Introduce Widgets" [Foreign bird species introduced in Oregon] - p.3-5; The Kenneth Denman Game Management Area - p.6; 1962 Salmon-Steelhead Sport Catch Sets Record - p.6; The Piscatorial ...

  Citation × Citation Citation Abstract Copy Title: Oregon State Game Commission bulletin; Vol.18 No.11 (November 1963) Author: Oregon. State Game Commission Contents: "Let's Introduce Widgets" [Foreign bird species introduced in Oregon] - p.3-5; The Kenneth Denman Game Management Area - p.6; 1962 Salmon-Steelhead Sport Catch Sets Record - p.6; The Piscatorial Combine [Wizard Falls Hatchery] - p.7; Kokanee Run in Detroit Reservoir - p.7 Title: Oregon State Game Commission bulletin; Vol.18 No.11 (November 1963) Author: Oregon. State Game Commission Contents: "Let's Introduce Widgets" [Foreign bird species introduced in Oregon] - p.3-5; The Kenneth Denman Game Management Area - p.6; 1962 Salmon-Steelhead Sport Catch Sets Record - p.6; The Piscatorial Combine [Wizard Falls Hatchery] - p.7; Kokanee Run in Detroit Reservoir - p.7 Close

• 74. [Article] Oregon State Game Commission bulletin; Vol.27 No.8 (August 1972)

  Contents: Don't Blame the Fish [Reasons for strange tasting fish] - p.2; Oregon's Sea-Run Cutthroat Trout - p.3-7; Elk in the Wasco Game Management Unit - p.8-9; Angler's Report Record Salmon, Steelhead ...

  Citation × Citation Citation Abstract Copy Title: Oregon State Game Commission bulletin; Vol.27 No.8 (August 1972) Author: Oregon. State Game Commission Contents: Don't Blame the Fish [Reasons for strange tasting fish] - p.2; Oregon's Sea-Run Cutthroat Trout - p.3-7; Elk in the Wasco Game Management Unit - p.8-9; Angler's Report Record Salmon, Steelhead Catch - p.12 Title: Oregon State Game Commission bulletin; Vol.27 No.8 (August 1972) Author: Oregon. State Game Commission Contents: Don't Blame the Fish [Reasons for strange tasting fish] - p.2; Oregon's Sea-Run Cutthroat Trout - p.3-7; Elk in the Wasco Game Management Unit - p.8-9; Angler's Report Record Salmon, Steelhead Catch - p.12 Close

• 75. [Article] The Indian Dip Net Fishery at Celilo Falls on the Columbia River

  1. The Indians at Celilo Falls catch an average of over 2,600,000 pounds of fish each year, in dip nets in a manner very much the same as used by their ancestors. 2. The bulk of the fish caught at Celilo ...

  Citation × Citation Citation Abstract Copy Title: The Indian Dip Net Fishery at Celilo Falls on the Columbia River Author: Johnson, Donald R., Oregon. Fish Commission, Merrell, Theodore R., Schoning, Robert W. 1. The Indians at Celilo Falls catch an average of over 2,600,000 pounds of fish each year, in dip nets in a manner very much the same as used by their ancestors. 2. The bulk of the fish caught at Celilo Falls is from the upriver fall run of chinook salmon which spawns in the main Columbia, between Pasco and Rock Island Dam and on the main Snake River between Swan Falls and Marsing. 3. Until the present study, the magnitude of the Indian closed season subsistence catch, averaging 500,000 pounds annually, has been unknown. 4. Most of the fall closed season catch is dried for home use by the Indians during the year although some is sold illegally. 5. The annual average of 50,000 pounds of fish sold directly to tourists is relatively insignificant when compared to the amount sold through regular commercial channels during the open season. 6. The elimination of fixed gear in the Columbia River has increased the percentage of total fish caught by the Indians. In the case of chinooks, the Indian commercial catch increased 8.8 percent. 7. The average annual value of the total Indian catch 1947-1950 is estimated to be $700,000. Title: The Indian Dip Net Fishery at Celilo Falls on the Columbia River Author: Johnson, Donald R., Oregon. Fish Commission, Merrell, Theodore R., Schoning, Robert W. 1. The Indians at Celilo Falls catch an average of over 2,600,000 pounds of fish each year, in dip nets in a manner very much the same as used by their ancestors. 2. The bulk of the fish caught at Celilo Falls is from the upriver fall run of chinook salmon which spawns in the main Columbia, between Pasco and Rock Island Dam and on the main Snake River between Swan Falls and Marsing. 3. Until the present study, the magnitude of the Indian closed season subsistence catch, averaging 500,000 pounds annually, has been unknown. 4. Most of the fall closed season catch is dried for home use by the Indians during the year although some is sold illegally. 5. The annual average of 50,000 pounds of fish sold directly to tourists is relatively insignificant when compared to the amount sold through regular commercial channels during the open season. 6. The elimination of fixed gear in the Columbia River has increased the percentage of total fish caught by the Indians. In the case of chinooks, the Indian commercial catch increased 8.8 percent. 7. The average annual value of the total Indian catch 1947-1950 is estimated to be $700,000. Close

• 76. [Article] Behavior and survival of coho salmon, Oncorhynchus kisutch (Walbaum), in Sashin Creek, southeastern Alaska

  Behavior and survival in fresh water were studied for three brood years of coho salmon in Sashin Creek, Alaska, from October 1963, until September 1966. Investigations of spawning adults were conducted ...

  Citation × Citation Citation Abstract Copy Title: Behavior and survival of coho salmon, Oncorhynchus kisutch (Walbaum), in Sashin Creek, southeastern Alaska Author: Crone, Richard Allan Behavior and survival in fresh water were studied for three brood years of coho salmon in Sashin Creek, Alaska, from October 1963, until September 1966. Investigations of spawning adults were conducted to determine numbers of spawners, distribution on the spawning grounds, effects on pink salmon, age composition, redd life, fecundities, and egg retention. Juvenile coho were studied to determine changes in population size, distribution in the stream, age composition of the population, food habits, and rates of mortality during fresh-water life. The number of coho spawners counted into Sashin Creek each year normally varied from 50 to 300. Weir counts and estimations of the number of spawners determined from observed spawning effort and redd life were not accurate methods of estimating the coho escapement into Sashin Creek. In 1965, a more accurate estimate was obtained by tagging a portion of the run and recording marked to unmarked ratios on the spawning grounds. I estimated that less than two percent of the viable pink salmon embryos were destroyed in 1965 by the spawning activities of coho salmon. Most coho spawners returned to Sashin Creek in 1965 and 1966 in their fourth year of life after having migrated to sea in their third year (designated 4₃). Smaller numbers of 3₂ and 5₄ individuals composed the remainder of the spawning population. The mean redd life of 56 females was 13 days. A small sample of coho from Sashin Creek examined for fecundity in 1966 gave a mean of 2,868 eggs per female. A weir or fyke net was fished in the spring to estimate emigration of juvenile coho. Coho smolts left Sashin Creek from April through July; peak emigration occurred in late May or early June. Coho fry left the stream in the spring and summer in widely varying numbers from year to year. I estimated from growth data, population estimates, and analysis of scale samples that most coho juveniles remained in Sashin Creek for two growing seasons before migrating to sea. Analysis of scales from juvenile coho indicated that some reabsorption of scales occurs during the winter. The possibility of reabsorption of circuli makes back-calculation of the length of younger age-groups of coho from scale measurements unreliable. Diptera were represented more often than any other order of insects in the stomachs of juvenile coho. Hemiptera were important as food items to juvenile coho in a tributary stream. The estimated survival from egg deposition to immediately prior to emergence varied between 17.5 and. 34.9 percent for the three brood years, and averaged 27. 8 percent. Early summer populations of fry were variable in size and dependent on the size of the egg deposition of the brood. Populations of fry declined rapidly during July and early August. Instantaneous mortality rates were much higher for this period than during any other time in the fresh-water life of coho salmon in Sashin Creek. Mortality dropped to a low level during the following winter period. Title: Behavior and survival of coho salmon, Oncorhynchus kisutch (Walbaum), in Sashin Creek, southeastern Alaska Author: Crone, Richard Allan Behavior and survival in fresh water were studied for three brood years of coho salmon in Sashin Creek, Alaska, from October 1963, until September 1966. Investigations of spawning adults were conducted to determine numbers of spawners, distribution on the spawning grounds, effects on pink salmon, age composition, redd life, fecundities, and egg retention. Juvenile coho were studied to determine changes in population size, distribution in the stream, age composition of the population, food habits, and rates of mortality during fresh-water life. The number of coho spawners counted into Sashin Creek each year normally varied from 50 to 300. Weir counts and estimations of the number of spawners determined from observed spawning effort and redd life were not accurate methods of estimating the coho escapement into Sashin Creek. In 1965, a more accurate estimate was obtained by tagging a portion of the run and recording marked to unmarked ratios on the spawning grounds. I estimated that less than two percent of the viable pink salmon embryos were destroyed in 1965 by the spawning activities of coho salmon. Most coho spawners returned to Sashin Creek in 1965 and 1966 in their fourth year of life after having migrated to sea in their third year (designated 4₃). Smaller numbers of 3₂ and 5₄ individuals composed the remainder of the spawning population. The mean redd life of 56 females was 13 days. A small sample of coho from Sashin Creek examined for fecundity in 1966 gave a mean of 2,868 eggs per female. A weir or fyke net was fished in the spring to estimate emigration of juvenile coho. Coho smolts left Sashin Creek from April through July; peak emigration occurred in late May or early June. Coho fry left the stream in the spring and summer in widely varying numbers from year to year. I estimated from growth data, population estimates, and analysis of scale samples that most coho juveniles remained in Sashin Creek for two growing seasons before migrating to sea. Analysis of scales from juvenile coho indicated that some reabsorption of scales occurs during the winter. The possibility of reabsorption of circuli makes back-calculation of the length of younger age-groups of coho from scale measurements unreliable. Diptera were represented more often than any other order of insects in the stomachs of juvenile coho. Hemiptera were important as food items to juvenile coho in a tributary stream. The estimated survival from egg deposition to immediately prior to emergence varied between 17.5 and. 34.9 percent for the three brood years, and averaged 27. 8 percent. Early summer populations of fry were variable in size and dependent on the size of the egg deposition of the brood. Populations of fry declined rapidly during July and early August. Instantaneous mortality rates were much higher for this period than during any other time in the fresh-water life of coho salmon in Sashin Creek. Mortality dropped to a low level during the following winter period. Close

• 77. [Article] FishXing: evaluation of fish passage culvert model and comparision with Oregon Department of Forestry's compliance with fish passage and peak flow requirements at stream crossings

  FishXing (fish crossing), a computer aided stream crossing culvert model designed to analyze fish passage through culverts was compared with results of an Oregon Department of Forestry fish passage monitoring ...

  Citation × Citation Citation Abstract Copy Title: FishXing: evaluation of fish passage culvert model and comparision with Oregon Department of Forestry's compliance with fish passage and peak flow requirements at stream crossings Author: Morrissette, Brett A. FishXing (fish crossing), a computer aided stream crossing culvert model designed to analyze fish passage through culverts was compared with results of an Oregon Department of Forestry fish passage monitoring report. FishXing was created at Humboldt State University through sponsorship from the US Forest Service, USDA, Stream Team, Six Rivers National Forest, San Dimas Technology and Development Center, The Watershed Stewards Project, and the Federal Highway Administration. A comparison was made between results generated using FishXing with results found by ODF in the Oregon Department of Forestry (ODF): Compliance With Fish Passage and Peak Flow Requirements at Stream Crossings monitoring project. Stream crossing culvert data from the ODF fish passage study was used to run FishXing. The ODF monitoring project investigated 74 fish passage culvert installations that were constructed following approval of Written Plans filed with ODF in 1998. (An approved Written Plan is equivalent to a permit with ODF). Information about culvert installations was analyzed using FishXing. Four different trials were run for each culvert using both adult and juvenile Coho Salmon and Cutthroat trout using the FishXing software. Three trials used the default values for swimming abilities of adult and juvenile Coho salmon and adult Cutthroat trout. Juvenile Cutthroat trout were also included in the comparison; however, FishXing did not contain a default setting for them. Therefore, a velocity of 2 feet per second (fj,$), the current target velocity for stream crossings on fish 111 bearing streams in the state of Oregon, was used for juvenile Cutthroat trout (ODFW 2). After making comparisons with the preliminary ODF results, further study was done to assess the accuracy of the calculations carried out within FishXing. This was based on Manning's equation (V=1 .49/n*R2"3*Sh"2) and other formulas given in the "help" section of FishXing. Flow calculations were also compared with the Haestad Culvert Master program. The results produced using Manning's equation show no statistical difference from those generated using FishXing. Furthermore, there was an insignificant statistical difference found between FishXing-generated output and that of Culvert Master. Positive and negative attributes concerning FishXing are addressed at the end of the report. Title: FishXing: evaluation of fish passage culvert model and comparision with Oregon Department of Forestry's compliance with fish passage and peak flow requirements at stream crossings Author: Morrissette, Brett A. FishXing (fish crossing), a computer aided stream crossing culvert model designed to analyze fish passage through culverts was compared with results of an Oregon Department of Forestry fish passage monitoring report. FishXing was created at Humboldt State University through sponsorship from the US Forest Service, USDA, Stream Team, Six Rivers National Forest, San Dimas Technology and Development Center, The Watershed Stewards Project, and the Federal Highway Administration. A comparison was made between results generated using FishXing with results found by ODF in the Oregon Department of Forestry (ODF): Compliance With Fish Passage and Peak Flow Requirements at Stream Crossings monitoring project. Stream crossing culvert data from the ODF fish passage study was used to run FishXing. The ODF monitoring project investigated 74 fish passage culvert installations that were constructed following approval of Written Plans filed with ODF in 1998. (An approved Written Plan is equivalent to a permit with ODF). Information about culvert installations was analyzed using FishXing. Four different trials were run for each culvert using both adult and juvenile Coho Salmon and Cutthroat trout using the FishXing software. Three trials used the default values for swimming abilities of adult and juvenile Coho salmon and adult Cutthroat trout. Juvenile Cutthroat trout were also included in the comparison; however, FishXing did not contain a default setting for them. Therefore, a velocity of 2 feet per second (fj,$), the current target velocity for stream crossings on fish 111 bearing streams in the state of Oregon, was used for juvenile Cutthroat trout (ODFW 2). After making comparisons with the preliminary ODF results, further study was done to assess the accuracy of the calculations carried out within FishXing. This was based on Manning's equation (V=1 .49/n*R2"3*Sh"2) and other formulas given in the "help" section of FishXing. Flow calculations were also compared with the Haestad Culvert Master program. The results produced using Manning's equation show no statistical difference from those generated using FishXing. Furthermore, there was an insignificant statistical difference found between FishXing-generated output and that of Culvert Master. Positive and negative attributes concerning FishXing are addressed at the end of the report. Close

• 78. [Article] Habitat Improvement Project, No. 21

  "A view-window counting station was operated at the Pacific Power and Light Company's dam on the North Umpqua River at Winchester, Douglas County, Oregon. The fish passing the dam each season were enumerated ...

  Citation × Citation Citation Abstract Copy Title: Habitat Improvement Project, No. 21 Author: Bauer, Jerry A., Oregon. State Game Commission. Fishery Division "A view-window counting station was operated at the Pacific Power and Light Company's dam on the North Umpqua River at Winchester, Douglas County, Oregon. The fish passing the dam each season were enumerated by species, according to a statistical sampling program established at Oregon State University. The counter recorded the marked fish of hatchery origin contained in each run of fish. The data collected were used to project total figures for each species of fish, evaluate hatchery production, provide information to the public, and in formulating angling regulations." (Abstract From Author) Title: Habitat Improvement Project, No. 21 Author: Bauer, Jerry A., Oregon. State Game Commission. Fishery Division "A view-window counting station was operated at the Pacific Power and Light Company's dam on the North Umpqua River at Winchester, Douglas County, Oregon. The fish passing the dam each season were enumerated by species, according to a statistical sampling program established at Oregon State University. The counter recorded the marked fish of hatchery origin contained in each run of fish. The data collected were used to project total figures for each species of fish, evaluate hatchery production, provide information to the public, and in formulating angling regulations." (Abstract From Author) Close

• 79. [Article] Relationships among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics over multiple years and spatial scales in the Elk River, Oregon

  Research on the distribution of juvenile salmonids in streams has been dominated by studies examining small areas over short periods. However, information relevant to freshwater influences on population ...

  Citation × Citation Citation Abstract Copy Title: Relationships among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics over multiple years and spatial scales in the Elk River, Oregon Author: Burnett, Kelly M. Research on the distribution of juvenile salmonids in streams has been dominated by studies examining small areas over short periods. However, information relevant to freshwater influences on population persistence is likely to derive from longer-term, multi-scale studies. Relationships were examined among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics throughout the Elk River, Oregon over 7 years at multiple spatial scales. Ocean-type chinook salmon (Oncorhynchus tshawytscha), coho salmon (0. kisutch), coastal cutthroat trout (0. clarki) and winter-run steelhead (0. mykiss) comprised the salmonid assemblage. Habitat selection was quantified at stream system, valley segment, and channel unit scales by selection ratios estimated with bootstrapping methods. Unconstrained valleys in tributaries and pools in the mainstem were typically selected by each species except steelhead, which often avoided these. Valley segment types generally did not differ for characteristics routinely assessed in stream surveys. Thus, fish probably perceived other biotic or abiotic differences among valley segment types. Evidence suggested competition may have influenced selection by coho and chinook salmon. Discriminant analysis indicated that level of use by juvenile chinook salmon appeared related to valley segment type and spatial position. Unconstrained valleys, nearby valley segments, and valley segments with larger, deeper pools, containing more wood were most highly used by chinook salmon. Mean volume and maximum depth of pools were each directly related to catchment area, which explained more variation than landscape characteristics summarized at any of five spatial scales. At each scale except the most spatially extensive, wood density in valley segments was negatively related to the percent area in resistant rock types and positively related to the percent area in mature to old forests. The most variation was explained with these landscape variables summarized at an intermediate spatial scale (i.e., sub-catchment). Although spatial scales appeared similar in processes affecting wood density, finer scales omitted key source areas for wood delivery, and coarser scales included source areas less tightly coupled to wood dynamics in surveyed channels. If only 1 or 2 years of data or one spatial scale had been examined, as commonly occurs, conclusions may have differed substantially from those in this study. Title: Relationships among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics over multiple years and spatial scales in the Elk River, Oregon Author: Burnett, Kelly M. Research on the distribution of juvenile salmonids in streams has been dominated by studies examining small areas over short periods. However, information relevant to freshwater influences on population persistence is likely to derive from longer-term, multi-scale studies. Relationships were examined among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics throughout the Elk River, Oregon over 7 years at multiple spatial scales. Ocean-type chinook salmon (Oncorhynchus tshawytscha), coho salmon (0. kisutch), coastal cutthroat trout (0. clarki) and winter-run steelhead (0. mykiss) comprised the salmonid assemblage. Habitat selection was quantified at stream system, valley segment, and channel unit scales by selection ratios estimated with bootstrapping methods. Unconstrained valleys in tributaries and pools in the mainstem were typically selected by each species except steelhead, which often avoided these. Valley segment types generally did not differ for characteristics routinely assessed in stream surveys. Thus, fish probably perceived other biotic or abiotic differences among valley segment types. Evidence suggested competition may have influenced selection by coho and chinook salmon. Discriminant analysis indicated that level of use by juvenile chinook salmon appeared related to valley segment type and spatial position. Unconstrained valleys, nearby valley segments, and valley segments with larger, deeper pools, containing more wood were most highly used by chinook salmon. Mean volume and maximum depth of pools were each directly related to catchment area, which explained more variation than landscape characteristics summarized at any of five spatial scales. At each scale except the most spatially extensive, wood density in valley segments was negatively related to the percent area in resistant rock types and positively related to the percent area in mature to old forests. The most variation was explained with these landscape variables summarized at an intermediate spatial scale (i.e., sub-catchment). Although spatial scales appeared similar in processes affecting wood density, finer scales omitted key source areas for wood delivery, and coarser scales included source areas less tightly coupled to wood dynamics in surveyed channels. If only 1 or 2 years of data or one spatial scale had been examined, as commonly occurs, conclusions may have differed substantially from those in this study. Close

• 80. [Article] Racial identification of chinook salmon (Oncorhynchus tshawytscha) and juvenile steelhead trout (Salmo gairdneri)

  Efforts to manage stocks of salmonids in Pacific Northwest stream systems are complicated by the occurrence of several runs of a species thought to represent races rearing sympatrically as juveniles. In ...

  Citation × Citation Citation Abstract Copy Title: Racial identification of chinook salmon (Oncorhynchus tshawytscha) and juvenile steelhead trout (Salmo gairdneri) Author: Martin, James T. Efforts to manage stocks of salmonids in Pacific Northwest stream systems are complicated by the occurrence of several runs of a species thought to represent races rearing sympatrically as juveniles. In order to collect the population statistics needed to properly manage these stocks, managers need a method of identifying juvenile salmonids by race. In an effort to determine if taxonomic or morphological differences exist between these races, wild juvenile summer and winter steelhead trout (Salmo gairdneri) and wild juvenile spring and fall chinook salmon (Oncorhynchus tshawytscha) from the Rogue River (Oregon) were studied. The goal of the study was to determine if differences in taxonomic characters would allow racial identification of individual fish with 90% accuracy. The wild juvenile summer steelhead trout had significantly fewer vertebrae and larger nuclei, greater average intracircular spacing, and a larger length at first annulus formation of scales than winter steelhead trout. No differences between juvenile summer and winter steelhead trout were found in otolith nuclear diameter, total lipids or fatty acid composition of the muscle tissue. Wild juvenile spring chinook salmon exhibited significantly lower vertebral counts, larger otolith nuclear diameter, greater average intracircular spacing, larger scale nuclei, and a larger first and second band of five intracircular spaces than juvenile fall chinook salmon. Mesentary fat deposition was highly variable between fish from the same streams and was not useful in separating juveniles by race. Although significant differences between races were found for both species, none of these differences were sufficient to allow the racial identification of individual fish with 90% accuracy. It is not known if the differences found were caused by genetic or environmental effects or both. One experiment showed that summer and winter steelhead showed no difference in vertebrae or otolith dimensions when incubated under the same conditions, suggesting that differences found in wild steelhead trout were caused by environmental effects. The lack of distinct phenotypic differences between individual fish of different races may be caused by extensive interbreeding between races of salmonids in the Rogue Basin due to large environmental variability during the spawning season for chinook salmon and steelhead trout. It is also possible that environmental variation in the early life history masked genetic differences between the races. Title: Racial identification of chinook salmon (Oncorhynchus tshawytscha) and juvenile steelhead trout (Salmo gairdneri) Author: Martin, James T. Efforts to manage stocks of salmonids in Pacific Northwest stream systems are complicated by the occurrence of several runs of a species thought to represent races rearing sympatrically as juveniles. In order to collect the population statistics needed to properly manage these stocks, managers need a method of identifying juvenile salmonids by race. In an effort to determine if taxonomic or morphological differences exist between these races, wild juvenile summer and winter steelhead trout (Salmo gairdneri) and wild juvenile spring and fall chinook salmon (Oncorhynchus tshawytscha) from the Rogue River (Oregon) were studied. The goal of the study was to determine if differences in taxonomic characters would allow racial identification of individual fish with 90% accuracy. The wild juvenile summer steelhead trout had significantly fewer vertebrae and larger nuclei, greater average intracircular spacing, and a larger length at first annulus formation of scales than winter steelhead trout. No differences between juvenile summer and winter steelhead trout were found in otolith nuclear diameter, total lipids or fatty acid composition of the muscle tissue. Wild juvenile spring chinook salmon exhibited significantly lower vertebral counts, larger otolith nuclear diameter, greater average intracircular spacing, larger scale nuclei, and a larger first and second band of five intracircular spaces than juvenile fall chinook salmon. Mesentary fat deposition was highly variable between fish from the same streams and was not useful in separating juveniles by race. Although significant differences between races were found for both species, none of these differences were sufficient to allow the racial identification of individual fish with 90% accuracy. It is not known if the differences found were caused by genetic or environmental effects or both. One experiment showed that summer and winter steelhead showed no difference in vertebrae or otolith dimensions when incubated under the same conditions, suggesting that differences found in wild steelhead trout were caused by environmental effects. The lack of distinct phenotypic differences between individual fish of different races may be caused by extensive interbreeding between races of salmonids in the Rogue Basin due to large environmental variability during the spawning season for chinook salmon and steelhead trout. It is also possible that environmental variation in the early life history masked genetic differences between the races. Close

• 81. [Article] A biological and taxonomic study of selected myxosporida of some Oregon fresh-water fishes

  Biological studies were conducted on a histozoic myxosporidan Myxobolus insidiosus (Wyatt and Pratt, 1963) from the musculature of Oncorhynchus tshawytscha (Walbaum). This organism is known to occur in ...

  Citation × Citation Citation Abstract Copy Title: A biological and taxonomic study of selected myxosporida of some Oregon fresh-water fishes Author: Wyatt, Ellis Junior Biological studies were conducted on a histozoic myxosporidan Myxobolus insidiosus (Wyatt and Pratt, 1963) from the musculature of Oncorhynchus tshawytscha (Walbaum). This organism is known to occur in spring chinook salmon in Oregon and coho salmon O. kisutch (Walbaum) in Washington. In addition Myxobolus kisutchi (Yasutake and Wood, 1957) was found in cysts in the brain of a new host, the spring chinook salmon. Salmo clarki clarki (Richardson) was found to be parasitized by a Myxobolus sp. The spore morphology and the location of some cysts in the connective tissue of the striated muscle differ from that of M. insidiosus. Transmission studies on Myxobolus insidiosus in disease free water supplies provided only negative data. Infected tissue from juvenile and adult fish fed to susceptible juvenile salmon failed to produce disease. Contact of non-infected juvenile fish with infected juvenile salmon also failed to produce disease. Uninfected, juvenile fish, continuously exposed to spore-seeded mud for 210 days failed to develop the infection. Mud from an infective area in running spring water was not infective to susceptible fish. Fish placed in rearing ponds receiving water in which fish previously had developed the infection became diseased. Experiments with fish infected in this way provided positive data. The time between exposure to infective water and finding of patent disease was between 76 and 83 days. The disease becomes patent when the average daily water temperature is near 8.4°C. Fish exposed to infective water for a period of eight to 22 days became infected. If the exposure was in February and March, increases in exposure time raised the percent of infection, but similar periods of exposure in May resulted in a reduced incidence of the disease. Data indicate that the McKenzie River water is probably not continuously infective. Placement of fish with the prepatent disease in warmer water caused the disease to become patent and accelerated the time to spore formation. Susceptibility was not dependent on age or size of fish. Spores were found in adult fish that had returned to spawn after four years at sea. Transmission of the disease on or in the egg does not appear to take place. There was a 12.5 percent disease incidence in fish reared in concrete raceway ponds. Fish from dirt rearing ponds which were in series had a 100 percent incidence at the time of liberation. Water turnover rate is important in the epidemiology of the disease. Calcium hydroxide at 0.12 and 0.25 percent caused apparent degeneration of the spores when tested in mud after 216 hours of exposure. Spores in mud with water flowing near them may remain morphologically intact up to 298 days. The nitrofuran drug, Furanace, was ineffective against trophozoites of Chloromyxym sp. and vegetative stages of Myxobolus insidiosus. A diagnosis of Myxobolus insidiosus in juvenile and adult coho salmon in the Lewis River in Washington was confirmed. Autoinfection of juvenile spring chinook with M. insidiosus could not be confirmed. Compact nodular areas made up of fibroblasts and mesenchymal-like cells were found in areas of striated muscle where spore-bearing cysts once occurred. Title: A biological and taxonomic study of selected myxosporida of some Oregon fresh-water fishes Author: Wyatt, Ellis Junior Biological studies were conducted on a histozoic myxosporidan Myxobolus insidiosus (Wyatt and Pratt, 1963) from the musculature of Oncorhynchus tshawytscha (Walbaum). This organism is known to occur in spring chinook salmon in Oregon and coho salmon O. kisutch (Walbaum) in Washington. In addition Myxobolus kisutchi (Yasutake and Wood, 1957) was found in cysts in the brain of a new host, the spring chinook salmon. Salmo clarki clarki (Richardson) was found to be parasitized by a Myxobolus sp. The spore morphology and the location of some cysts in the connective tissue of the striated muscle differ from that of M. insidiosus. Transmission studies on Myxobolus insidiosus in disease free water supplies provided only negative data. Infected tissue from juvenile and adult fish fed to susceptible juvenile salmon failed to produce disease. Contact of non-infected juvenile fish with infected juvenile salmon also failed to produce disease. Uninfected, juvenile fish, continuously exposed to spore-seeded mud for 210 days failed to develop the infection. Mud from an infective area in running spring water was not infective to susceptible fish. Fish placed in rearing ponds receiving water in which fish previously had developed the infection became diseased. Experiments with fish infected in this way provided positive data. The time between exposure to infective water and finding of patent disease was between 76 and 83 days. The disease becomes patent when the average daily water temperature is near 8.4°C. Fish exposed to infective water for a period of eight to 22 days became infected. If the exposure was in February and March, increases in exposure time raised the percent of infection, but similar periods of exposure in May resulted in a reduced incidence of the disease. Data indicate that the McKenzie River water is probably not continuously infective. Placement of fish with the prepatent disease in warmer water caused the disease to become patent and accelerated the time to spore formation. Susceptibility was not dependent on age or size of fish. Spores were found in adult fish that had returned to spawn after four years at sea. Transmission of the disease on or in the egg does not appear to take place. There was a 12.5 percent disease incidence in fish reared in concrete raceway ponds. Fish from dirt rearing ponds which were in series had a 100 percent incidence at the time of liberation. Water turnover rate is important in the epidemiology of the disease. Calcium hydroxide at 0.12 and 0.25 percent caused apparent degeneration of the spores when tested in mud after 216 hours of exposure. Spores in mud with water flowing near them may remain morphologically intact up to 298 days. The nitrofuran drug, Furanace, was ineffective against trophozoites of Chloromyxym sp. and vegetative stages of Myxobolus insidiosus. A diagnosis of Myxobolus insidiosus in juvenile and adult coho salmon in the Lewis River in Washington was confirmed. Autoinfection of juvenile spring chinook with M. insidiosus could not be confirmed. Compact nodular areas made up of fibroblasts and mesenchymal-like cells were found in areas of striated muscle where spore-bearing cysts once occurred. Close

• 82. [Article] A methodology for evaluating the economic impact on directed fisheries of by-catch losses in the foreign and joint-venture groundfish fisheries

  The principal objective of this analysis is the development of a methodological approach that would permit a more complete evaluation of the physical and economic consequences of prohibited species by-catch (PSC) ...

  Citation × Citation Citation Abstract Copy Title: A methodology for evaluating the economic impact on directed fisheries of by-catch losses in the foreign and joint-venture groundfish fisheries Author: Queirolo, Lewis E. The principal objective of this analysis is the development of a methodological approach that would permit a more complete evaluation of the physical and economic consequences of prohibited species by-catch (PSC) losses, such as occur in the harvest of groundfish. To achieve efficient management of the several marine species involved in the groundfish and associated PSC controversy, U.S. regulatory authorities sought to obtain estimates of the probable economic and physical impacts attributable to these harvesting activities. Early efforts were based upon the assumption that all PSC losses would have accrued to directed fisheries in the year subsequent to that in which the by-caught specimen would have been legally harvestable. The present analysis hypothesizes that substantial latent economic costs, associated with foregone reproductive potential, are also attributable to PSC losses and incorrectly ignored by previous assessment methodologies. To test this assertion an alternative methodology was developed and empirically applied to the case of Pacific salmon PSCs in the Gulf of Alaska groundfish fisheries. The empirical results demonstrate the presence of substantial latent losses associated with salmon PSC reproductive potential foregone. Although preliminary, these results confirm the presence of the hypothesized long run adverse economic impacts on directed salmon fisheries associated with a single season's PSC interception. Similar results would be expected in the case of Pacific halibut, king crab, and Tanner crab, although substantial research on the biological impacts of PSC losses on these species remains to be done. Refinement of the economic components of the proposed model and improvement of the primary data upon which it relies will, likewise, involve substantial investments in further research. Title: A methodology for evaluating the economic impact on directed fisheries of by-catch losses in the foreign and joint-venture groundfish fisheries Author: Queirolo, Lewis E. The principal objective of this analysis is the development of a methodological approach that would permit a more complete evaluation of the physical and economic consequences of prohibited species by-catch (PSC) losses, such as occur in the harvest of groundfish. To achieve efficient management of the several marine species involved in the groundfish and associated PSC controversy, U.S. regulatory authorities sought to obtain estimates of the probable economic and physical impacts attributable to these harvesting activities. Early efforts were based upon the assumption that all PSC losses would have accrued to directed fisheries in the year subsequent to that in which the by-caught specimen would have been legally harvestable. The present analysis hypothesizes that substantial latent economic costs, associated with foregone reproductive potential, are also attributable to PSC losses and incorrectly ignored by previous assessment methodologies. To test this assertion an alternative methodology was developed and empirically applied to the case of Pacific salmon PSCs in the Gulf of Alaska groundfish fisheries. The empirical results demonstrate the presence of substantial latent losses associated with salmon PSC reproductive potential foregone. Although preliminary, these results confirm the presence of the hypothesized long run adverse economic impacts on directed salmon fisheries associated with a single season's PSC interception. Similar results would be expected in the case of Pacific halibut, king crab, and Tanner crab, although substantial research on the biological impacts of PSC losses on these species remains to be done. Refinement of the economic components of the proposed model and improvement of the primary data upon which it relies will, likewise, involve substantial investments in further research. Close

• 83. [Article] Weak Stock Bycatch Avoidance in the West Coast Ocean Salmon Fishery: A Bioeconomic Model Using Spatio-Temporal Data from Commercial Fishermen

  Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, ...

  Citation × Citation Citation Abstract Copy Title: Weak Stock Bycatch Avoidance in the West Coast Ocean Salmon Fishery: A Bioeconomic Model Using Spatio-Temporal Data from Commercial Fishermen Author: Simons, Sarah, Lewis, Staci, Lawson, Peter, Otto, Saskia A., Stoll, Josua Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Title: Weak Stock Bycatch Avoidance in the West Coast Ocean Salmon Fishery: A Bioeconomic Model Using Spatio-Temporal Data from Commercial Fishermen Author: Simons, Sarah, Lewis, Staci, Lawson, Peter, Otto, Saskia A., Stoll, Josua Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Close

• 84. [Article] A study of conflict in natural resource use: evaluation of recreational benefits as related to changes in water quality

  The evaluation of social investment in water pollution control has been retarded by a lack of methodology with which to evaluate the direct benefits. The objective of this dissertation was to develop theory ...

  Citation × Citation Citation Abstract Copy Title: A study of conflict in natural resource use: evaluation of recreational benefits as related to changes in water quality Author: Stevens, Joe Bruce The evaluation of social investment in water pollution control has been retarded by a lack of methodology with which to evaluate the direct benefits. The objective of this dissertation was to develop theory and methodology for estimating direct recreational benefits associated with the protection of sport fisheries. An inter-disciplinary case study of pulp mill waste disposal alternatives at Yaquina Bay, Oregon, provided the setting for research. Methodology for estimating direct benefits was based on a bio-economic model of sports angling. A theory of angler demand behavior was developed, with special consideration of the "quality" of the recreational experience. This quality factor was specified as "angler success per unit of angling effort". The aggregate relationship between these two variables in a sport fishery was termed a "success-effort relationship". Conventional demand relationships between quantity, price, and income were also postulated. A biological production function for a sport fishery was envisioned between inputs of angler effort and an output, angler yield. The marginal product was termed a biological "success" function. Equilibrium levels of success and effort are determined by the biological "success" and behavioral "success-effort" relationships. Water pollution would reduce the level of water quality, lower the biological production function, and reduce the equilibrium levels of success and effort. The reduced level of effort would be manifested in a decreased net economic value of the sport fishery. Direct benefits of water pollution control would be equal to the averted reduction in net economic value. Data for empirical estimation of the biological "success", behavioral "success-effort", and conventional demand functions were obtained from a field survey of Yaquina Bay sports anglers, two related mail surveys, and secondary sources. Estimates of these three types of relationships were made for each of three major sport fisheries in the estuary. The "success-effort" relationships were estimated by multiple regression analysis of time-series and cross-sectional data. The level of salmon angling effort was significantly responsive to success changes at fisheries similar to Yaquina Bay. The degree of response was expressed in terms of a "success elasticity". Two short-run success elasticity estimates (.375 and .584) were made for offshore salmon angling at Newport, and a long-run estimate of .999 was made for off-shore salmon angling at Winchester Bay. Bottomfish anglers at Yaquina Bay were not significantly responsive to success changes in time-series analyses, although the results of a mail questionnaire which posed hypothetical "success-effort" situations indicated that the response would be greater if angler knowledge of current success could be increased. Cross-sectional analyses of these data also revealed that increased angler incomes and distances from the fishery were reflected in larger success elasticities. Demand equations were estimated for each sport fishery. Net economic value of the total Yaquina Bay sport fishery was estimated to be $22,747 per year. A non-discriminating monopolistic owner of the fisheries could maximize revenues at this level by charging $1.50 per angler day for salmon and bottomfish angling, and $1.00 per day for clam digging. Negative income elasticities for bottomfish angling and clam digging prevented the projected yearly rate of increase in net economic value (2.25 percent) from being larger. The methodology for estimating direct benefits was illustrated with a hypothetical water pollution control alternative at Yaquina Bay. The "success elasticities" were used to reduce each quantity observation in the demand models, and estimation of the revised demand equations facilitated a comparison of net economic values with and without water pollution control. The methodology will be used later to evaluate direct benefits from each pollution control alternative at Yaquina Bay. Title: A study of conflict in natural resource use: evaluation of recreational benefits as related to changes in water quality Author: Stevens, Joe Bruce The evaluation of social investment in water pollution control has been retarded by a lack of methodology with which to evaluate the direct benefits. The objective of this dissertation was to develop theory and methodology for estimating direct recreational benefits associated with the protection of sport fisheries. An inter-disciplinary case study of pulp mill waste disposal alternatives at Yaquina Bay, Oregon, provided the setting for research. Methodology for estimating direct benefits was based on a bio-economic model of sports angling. A theory of angler demand behavior was developed, with special consideration of the "quality" of the recreational experience. This quality factor was specified as "angler success per unit of angling effort". The aggregate relationship between these two variables in a sport fishery was termed a "success-effort relationship". Conventional demand relationships between quantity, price, and income were also postulated. A biological production function for a sport fishery was envisioned between inputs of angler effort and an output, angler yield. The marginal product was termed a biological "success" function. Equilibrium levels of success and effort are determined by the biological "success" and behavioral "success-effort" relationships. Water pollution would reduce the level of water quality, lower the biological production function, and reduce the equilibrium levels of success and effort. The reduced level of effort would be manifested in a decreased net economic value of the sport fishery. Direct benefits of water pollution control would be equal to the averted reduction in net economic value. Data for empirical estimation of the biological "success", behavioral "success-effort", and conventional demand functions were obtained from a field survey of Yaquina Bay sports anglers, two related mail surveys, and secondary sources. Estimates of these three types of relationships were made for each of three major sport fisheries in the estuary. The "success-effort" relationships were estimated by multiple regression analysis of time-series and cross-sectional data. The level of salmon angling effort was significantly responsive to success changes at fisheries similar to Yaquina Bay. The degree of response was expressed in terms of a "success elasticity". Two short-run success elasticity estimates (.375 and .584) were made for offshore salmon angling at Newport, and a long-run estimate of .999 was made for off-shore salmon angling at Winchester Bay. Bottomfish anglers at Yaquina Bay were not significantly responsive to success changes in time-series analyses, although the results of a mail questionnaire which posed hypothetical "success-effort" situations indicated that the response would be greater if angler knowledge of current success could be increased. Cross-sectional analyses of these data also revealed that increased angler incomes and distances from the fishery were reflected in larger success elasticities. Demand equations were estimated for each sport fishery. Net economic value of the total Yaquina Bay sport fishery was estimated to be $22,747 per year. A non-discriminating monopolistic owner of the fisheries could maximize revenues at this level by charging $1.50 per angler day for salmon and bottomfish angling, and $1.00 per day for clam digging. Negative income elasticities for bottomfish angling and clam digging prevented the projected yearly rate of increase in net economic value (2.25 percent) from being larger. The methodology for estimating direct benefits was illustrated with a hypothetical water pollution control alternative at Yaquina Bay. The "success elasticities" were used to reduce each quantity observation in the demand models, and estimation of the revised demand equations facilitated a comparison of net economic values with and without water pollution control. The methodology will be used later to evaluate direct benefits from each pollution control alternative at Yaquina Bay. Close

• 85. [Article] Cumulative effects of land use on salmon habitat in southwest Oregon coastal streams

  As part of a hierarchical approach to classifying watersheds and stream habitats based on geomorphic and geologic criteria, we defined ten classes of fluvial and lacustrine habitats at the scale of valley ...

  Citation × Citation Citation Abstract Copy Title: Cumulative effects of land use on salmon habitat in southwest Oregon coastal streams Author: Frissell, Christopher Andrew, 1960- As part of a hierarchical approach to classifying watersheds and stream habitats based on geomorphic and geologic criteria, we defined ten classes of fluvial and lacustrine habitats at the scale of valley segments. Valley segments are landscape units which encompass surface waters and the adjacent floodplains and hillslopes with which they interact over time frames of thousands of years. They form a large-scale template that constrains the character of aquatic habitat, controls the effects of disturbances in riparian areas, and mediates responses of streams to upland and upstream events. The regional distribution of valley segment types in southwest Oregon reflects bedrock geology and tectonic history of the landscape. Fluvial segment types differ in stream adjacent landforms, slope erosion processes, floodplain and valley morphology, channel slope, riparian vegetation, streambank texture, gravel bar morphology, and pool-forming features. Studies that do not carefully account for inherent differences between valley segment types could fail to detect critical changes in stream habitat caused by human disturbance. Alluvial valley and alluviated canyon segment types, which have extensive floodplains, low channel slopes, abundant woody debris, and ample gravel beds, are of greatest direct importance for salmon and other native fishes. Virtually all alluvial valleys in the study area have been heavily disturbed by logging, agriculture, and residential development. Alluviated canyon segments located in the few drainage basins where human activity has been limited probably serve as habitat refugia for the last diverse assemblages and productive populations of salmon in the region. Alluviated canyons in extensively-fogged basins exhibit increased abundance of large woody debris, fewer cross-channel debris jams, more extensive bank erosion, reduced pool area and increased riffle area, shallower riffles, and increased surface concentration of fine sediments in pools and other habitats, compared to similar segments in lesser-disturbed basins. These changes in channel morphology and stability appear to be driven by increased sediment load, caused by logging-related landslides and other erosion sources. Field studies in Sixes River basin indicated that abundance and diversity of salmonid fishes declines as maximum stream temperature increases. Changes in summer distribution of juvenile chinook and coho salmon since 1970 are related to changes In water temperature. Although some tributaries have cooled, a decline in rearing distribution in mainstem areas could be caused by long-term loss of channel complexity and associated coolwater refugia. Analysis of fish habitat structures constructed by federal and state agencies indicated that failure rates are high. Recovery of anadromous fish runs in southwest Oregon will require protection of remaining habitat refugia and reduction of sediment yield from disturbed watersheds. Title: Cumulative effects of land use on salmon habitat in southwest Oregon coastal streams Author: Frissell, Christopher Andrew, 1960- As part of a hierarchical approach to classifying watersheds and stream habitats based on geomorphic and geologic criteria, we defined ten classes of fluvial and lacustrine habitats at the scale of valley segments. Valley segments are landscape units which encompass surface waters and the adjacent floodplains and hillslopes with which they interact over time frames of thousands of years. They form a large-scale template that constrains the character of aquatic habitat, controls the effects of disturbances in riparian areas, and mediates responses of streams to upland and upstream events. The regional distribution of valley segment types in southwest Oregon reflects bedrock geology and tectonic history of the landscape. Fluvial segment types differ in stream adjacent landforms, slope erosion processes, floodplain and valley morphology, channel slope, riparian vegetation, streambank texture, gravel bar morphology, and pool-forming features. Studies that do not carefully account for inherent differences between valley segment types could fail to detect critical changes in stream habitat caused by human disturbance. Alluvial valley and alluviated canyon segment types, which have extensive floodplains, low channel slopes, abundant woody debris, and ample gravel beds, are of greatest direct importance for salmon and other native fishes. Virtually all alluvial valleys in the study area have been heavily disturbed by logging, agriculture, and residential development. Alluviated canyon segments located in the few drainage basins where human activity has been limited probably serve as habitat refugia for the last diverse assemblages and productive populations of salmon in the region. Alluviated canyons in extensively-fogged basins exhibit increased abundance of large woody debris, fewer cross-channel debris jams, more extensive bank erosion, reduced pool area and increased riffle area, shallower riffles, and increased surface concentration of fine sediments in pools and other habitats, compared to similar segments in lesser-disturbed basins. These changes in channel morphology and stability appear to be driven by increased sediment load, caused by logging-related landslides and other erosion sources. Field studies in Sixes River basin indicated that abundance and diversity of salmonid fishes declines as maximum stream temperature increases. Changes in summer distribution of juvenile chinook and coho salmon since 1970 are related to changes In water temperature. Although some tributaries have cooled, a decline in rearing distribution in mainstem areas could be caused by long-term loss of channel complexity and associated coolwater refugia. Analysis of fish habitat structures constructed by federal and state agencies indicated that failure rates are high. Recovery of anadromous fish runs in southwest Oregon will require protection of remaining habitat refugia and reduction of sediment yield from disturbed watersheds. Close

• 86. [Article] Migratory Patterns of Wild Chinook Salmon Oncorhynchus tshawytscha Returning to a Large, Free-Flowing River Basin

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library ...

  Citation × Citation Citation Abstract Copy Title: Migratory Patterns of Wild Chinook Salmon Oncorhynchus tshawytscha Returning to a Large, Free-Flowing River Basin Author: Schreck, Carl B., Evans, Allison N., Eiler, John H. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library of Science and is in the public domain. The published article can be found at: http://www.plosone.org/. Title: Migratory Patterns of Wild Chinook Salmon Oncorhynchus tshawytscha Returning to a Large, Free-Flowing River Basin Author: Schreck, Carl B., Evans, Allison N., Eiler, John H. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library of Science and is in the public domain. The published article can be found at: http://www.plosone.org/. Close

• 87. [Article] Genetic Identification of Chinook Salmon: Stock-Specific Distributions of Juveniles along the Washington and Oregon Coasts

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) ...

  Citation × Citation Citation Abstract Copy Title: Genetic Identification of Chinook Salmon: Stock-Specific Distributions of Juveniles along the Washington and Oregon Coasts Author: Teel, David J., Burke, Brian J., Morgan, Cheryl A., Kuligowski, David R., Van Doornik, Donald M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Taylor & Francis. The published article can be found at: http://www.tandfonline.com/doi/full/10.1080/19425120.2015.1045961 Title: Genetic Identification of Chinook Salmon: Stock-Specific Distributions of Juveniles along the Washington and Oregon Coasts Author: Teel, David J., Burke, Brian J., Morgan, Cheryl A., Kuligowski, David R., Van Doornik, Donald M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Taylor & Francis. The published article can be found at: http://www.tandfonline.com/doi/full/10.1080/19425120.2015.1045961 Close

• 88. [Article] An economic analysis of alternative water allocations and habitat investments for anadromous fish production, John Day Basin, Oregon

  This thesis focuses on the economic efficiency of alternative habitat, streamfiow, and land use allocations within a major drainage of the Pacific Northwest. Specifically, productivity of present habitat and ...

  Citation × Citation Citation Abstract Copy Title: An economic analysis of alternative water allocations and habitat investments for anadromous fish production, John Day Basin, Oregon Author: Cerda, Arcadio Alberto This thesis focuses on the economic efficiency of alternative habitat, streamfiow, and land use allocations within a major drainage of the Pacific Northwest. Specifically, productivity of present habitat and streamfiow conditions is evaluated with respect to anadromous fish species (chinook salmon and steelhead trout) in the John Day River Basin, a high-desert system in the Pacific Northwest. Alternative water allocations and fish habitat enhancements to improve anadromous fish productivity are also examined. This biophysical information is combined with economics concepts to evaluate comparative benefits and economic efficiency of selected technically feasible habitat/streamflow alternatives. The John Day River Basin is used as a case study because it provides one of the most significant runs of wild summer steelhead trout and spring chinook salmon in the Columbia River Basin. Specific categories of alternative enhancements included water transfers to instream flow, habitat vegetation improvements, and habitat structural measures. The benefits of changes in fish numbers are valued through the travel cost method. Costs of habitat investments are derived from a synthesis of cost data for similar investments for the region. For most lower-reach stream sections, benefits of habitat investments/streamflow alternatives do not equal costs. However, changes in water allocations and habitat do appear economically efficient to some upper reaches. The main results suggest that economic efficiency varies greatly within the system, indicating the need for site-specific proposals for streamfiow or habitat alterations within this or similar high desert streams. In addition to providing preliminary estimates of the economic efficency of streamfiow and habitat investments, this thesis serves as a methodological template for future integrated bioeconomic evaluations of water and fishery management issues. Title: An economic analysis of alternative water allocations and habitat investments for anadromous fish production, John Day Basin, Oregon Author: Cerda, Arcadio Alberto This thesis focuses on the economic efficiency of alternative habitat, streamfiow, and land use allocations within a major drainage of the Pacific Northwest. Specifically, productivity of present habitat and streamfiow conditions is evaluated with respect to anadromous fish species (chinook salmon and steelhead trout) in the John Day River Basin, a high-desert system in the Pacific Northwest. Alternative water allocations and fish habitat enhancements to improve anadromous fish productivity are also examined. This biophysical information is combined with economics concepts to evaluate comparative benefits and economic efficiency of selected technically feasible habitat/streamflow alternatives. The John Day River Basin is used as a case study because it provides one of the most significant runs of wild summer steelhead trout and spring chinook salmon in the Columbia River Basin. Specific categories of alternative enhancements included water transfers to instream flow, habitat vegetation improvements, and habitat structural measures. The benefits of changes in fish numbers are valued through the travel cost method. Costs of habitat investments are derived from a synthesis of cost data for similar investments for the region. For most lower-reach stream sections, benefits of habitat investments/streamflow alternatives do not equal costs. However, changes in water allocations and habitat do appear economically efficient to some upper reaches. The main results suggest that economic efficiency varies greatly within the system, indicating the need for site-specific proposals for streamfiow or habitat alterations within this or similar high desert streams. In addition to providing preliminary estimates of the economic efficency of streamfiow and habitat investments, this thesis serves as a methodological template for future integrated bioeconomic evaluations of water and fishery management issues. Close

• 89. [Article] Economic evaluation of projects and policies affecting anadromous fish : a simulation approach

  Anadromous fish populations in the Pacific Northwest have undergone substantial change throughout the past century. Historical periods of over-harvest and the construction of numerous dams throughout the ...

  Citation × Citation Citation Abstract Copy Title: Economic evaluation of projects and policies affecting anadromous fish : a simulation approach Author: Hastie, James D. Anadromous fish populations in the Pacific Northwest have undergone substantial change throughout the past century. Historical periods of over-harvest and the construction of numerous dams throughout the region have contributed to declines in the runs of naturally spawning stocks. Management efforts to rebuild fish populations have focused on the restriction of harvest activities and the release of hatchery-reared salmon. A microcomputer simulation model is developed to estimate the economic impacts of management alternatives. In it, fish are passed throughout a network of nodes, according to parameters governing mortality and harvest. These parameters, and the node structure itself, are provided to the model by a user-specified input file. As a result, the model affords flexibility in meeting the modeling needs of differing salmonid stocks. The model's economic assessment capabilities are demonstrated through a case study of Rogue River spring chinook. Results of this exercise include estimates for the impacts of dam construction, hatchery releases, and changes in ocean and river harvest policies on the social value derived from harvest activities. The research also examines the redistribution of economic benefits associated with these policies. The impact of a recently constructed dam upon spring chinook fishermen is estimated at a loss of more than $10,600,000 over thirty years, given no hatchery supplementation. Current hatchery programs have mitigated the loss to fishermen, but whether they also offset their operating costs depends upon the particular harvest values employed. The value of providing an additional wild spawner to the basin is estimated to be roughly $300. Examination of various harvest alternatives indicates that restrictions placed on the commercial ocean fishery would be more successful in increasing the present value of harvests than would similar restrictions in the sport fishery. An important factor in this outcome is the higher value attributed to sport catch by currently accepted methods of valuation. Suggestions are made for improvements to the simulation model and the availability of information for use with it. Foremost among these is the need for improved specification of the marginal social value derived from salmon harvested in commercial and recreational fisheries. Title: Economic evaluation of projects and policies affecting anadromous fish : a simulation approach Author: Hastie, James D. Anadromous fish populations in the Pacific Northwest have undergone substantial change throughout the past century. Historical periods of over-harvest and the construction of numerous dams throughout the region have contributed to declines in the runs of naturally spawning stocks. Management efforts to rebuild fish populations have focused on the restriction of harvest activities and the release of hatchery-reared salmon. A microcomputer simulation model is developed to estimate the economic impacts of management alternatives. In it, fish are passed throughout a network of nodes, according to parameters governing mortality and harvest. These parameters, and the node structure itself, are provided to the model by a user-specified input file. As a result, the model affords flexibility in meeting the modeling needs of differing salmonid stocks. The model's economic assessment capabilities are demonstrated through a case study of Rogue River spring chinook. Results of this exercise include estimates for the impacts of dam construction, hatchery releases, and changes in ocean and river harvest policies on the social value derived from harvest activities. The research also examines the redistribution of economic benefits associated with these policies. The impact of a recently constructed dam upon spring chinook fishermen is estimated at a loss of more than $10,600,000 over thirty years, given no hatchery supplementation. Current hatchery programs have mitigated the loss to fishermen, but whether they also offset their operating costs depends upon the particular harvest values employed. The value of providing an additional wild spawner to the basin is estimated to be roughly $300. Examination of various harvest alternatives indicates that restrictions placed on the commercial ocean fishery would be more successful in increasing the present value of harvests than would similar restrictions in the sport fishery. An important factor in this outcome is the higher value attributed to sport catch by currently accepted methods of valuation. Suggestions are made for improvements to the simulation model and the availability of information for use with it. Foremost among these is the need for improved specification of the marginal social value derived from salmon harvested in commercial and recreational fisheries. Close

• 90. [Article] Evidence for selective mortality in marine environments: the role of fish migration size, timing, and production type

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research ...

  Citation × Citation Citation Abstract Copy Title: Evidence for selective mortality in marine environments: the role of fish migration size, timing, and production type Author: Teel, David J., Emmett, Robert L., Miller, Jessica A., Weitkamp, Laurie A., Claiborne, Andrew M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. Title: Evidence for selective mortality in marine environments: the role of fish migration size, timing, and production type Author: Teel, David J., Emmett, Robert L., Miller, Jessica A., Weitkamp, Laurie A., Claiborne, Andrew M. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. Close

• 91. [Article] The 1951 Alsea River silver salmon tagging program

  During a tagging operation conducted in 1951 on the Alsea River, 1,142 adult silver salmon were tagged with plastic Petersen-type tags and stainless steel jaw tags. An attempt was made to determine whether ...

  Citation × Citation Citation Abstract Copy Title: The 1951 Alsea River silver salmon tagging program Author: Oregon. Fish Commission, Cleaver, Fred C. (Frederick Charles), 1916-, Morgan, Alfred R. During a tagging operation conducted in 1951 on the Alsea River, 1,142 adult silver salmon were tagged with plastic Petersen-type tags and stainless steel jaw tags. An attempt was made to determine whether tagged fish released in different apparent conditions suffered differential mortalities. Under the hypothesis that the recovery of the fish in the commercial fishery was independent of the apparent condition of the fish when it was released, a significant value of chi-square was obtained. However, it was concluded that this significance was a result of sampling differences and not actually due to differences in mortality. The number of fish taken in the commercial catch each week was calculated by dividing the number of pounds in the weekly catch by the average weight of the fish in the samples for that week. It was calculated that the commercial fishery took approximately 14,000 fish during the season, which was only about 15 per cent of the run available to the fishery. This is an extremely low fishing mortality and is considerably lower than had been expected. The number of tags taken each week by the commercial fishery was calculated by dividing the number of fish in the catch each week by the number of fish per tag in the samples for the week. It was calculated that 67 tags were taken during the season by the commercial fishery. This number of recoveries was 15.5 per cent of the 438 tags available to the fishery. With the cooperation of a number of boat moorages on the Alsea River, an estimate of the sport catch of silver salmon was made. It was calculated that the lower river sport fishery took approximately 3,000 adult silvers with an additional 500 fish being taken by the bank fishery. The weight of the total catch of 3,500 fish was calculated to be about 33,000 pounds. This weight formed 20.2 percent of the combined commercial and sport catches. It was calculated that 18 tagged fish were taken in the sport catch. A total of 44 numbered Petersen and jaw tags were recovered from both dead and live fish which had reached spawning areas. This number includes three tags recovered from the spawning grounds of adjacent streams. When the tagged fish were examined according to areas recovered, it was found that Drift Creek had a smaller number of fish per tag than any other area with one exception. Recoveries appeared to be distributed throughout the drainage from any particular time of tagging. Fish enter the lower river together, then separate to the various spawning areas in the system. Several fish moved from the tagging location in the Alsea River to adjacent streams. About 7 percent of the total recoveries in Table 12 were made from streams other than the Alsea River. The Petersen and jaw tag recoveries in the samples of the commercial catch were examined for selection of the Petersen tags by the nets. The percentage by size group in the catch of fish with each type of tag was about the same as the percentage by size group with each type of tag at the time of release. Large losses of tags in the fishery would have been reflected by a higher number of fish per tag on the spawning grounds. Since the gill-nets did not appear to be selective on either type of tag, the Petersen tags, jaw tags, and tag scars were combined in the calculations involving tag recoveries. After the fish moved beyond the fishing area, many still did not move rapidly to the spawning grounds. Several were taken in tidewater or in the vicinity of tidewater 48-58 days after they had been tagged. The average time between tagging and recovery on the spawning grounds was 63 days for live fish and 70 days for dead fish. Using the method proposed by Schaefer (1951a) for obtaining a population estimate from spawning ground recoveries, an estimate of the population available to the fishery was made from the number of tags recovered by sampling the commercial catch. It was calculated that approximately 90,000 fish were available to the fishery. About 89,000 fish were calculated to be available to the fishery when the equation N = nt/s was used, where N = the population, n = the sample size, t = the number of fish tagged, and s = the number of tag recoveries. The 95 percent limits of confidence for the population estimate derived from the equation N = nt/s were calculated using the method developed by Chapman (1948). The lower limit was found to be 63,736 fish, and the upper limit was 119,371 fish. Approximately 63,000 of the fish available to the commercial fishery continued the migration to the spawning grounds. Spawning ground tag recoveries provided an estimate of the population in the lower river which was in close agreement with the estimate of the population made from tag recoveries in the commercial fishery. Title: The 1951 Alsea River silver salmon tagging program Author: Oregon. Fish Commission, Cleaver, Fred C. (Frederick Charles), 1916-, Morgan, Alfred R. During a tagging operation conducted in 1951 on the Alsea River, 1,142 adult silver salmon were tagged with plastic Petersen-type tags and stainless steel jaw tags. An attempt was made to determine whether tagged fish released in different apparent conditions suffered differential mortalities. Under the hypothesis that the recovery of the fish in the commercial fishery was independent of the apparent condition of the fish when it was released, a significant value of chi-square was obtained. However, it was concluded that this significance was a result of sampling differences and not actually due to differences in mortality. The number of fish taken in the commercial catch each week was calculated by dividing the number of pounds in the weekly catch by the average weight of the fish in the samples for that week. It was calculated that the commercial fishery took approximately 14,000 fish during the season, which was only about 15 per cent of the run available to the fishery. This is an extremely low fishing mortality and is considerably lower than had been expected. The number of tags taken each week by the commercial fishery was calculated by dividing the number of fish in the catch each week by the number of fish per tag in the samples for the week. It was calculated that 67 tags were taken during the season by the commercial fishery. This number of recoveries was 15.5 per cent of the 438 tags available to the fishery. With the cooperation of a number of boat moorages on the Alsea River, an estimate of the sport catch of silver salmon was made. It was calculated that the lower river sport fishery took approximately 3,000 adult silvers with an additional 500 fish being taken by the bank fishery. The weight of the total catch of 3,500 fish was calculated to be about 33,000 pounds. This weight formed 20.2 percent of the combined commercial and sport catches. It was calculated that 18 tagged fish were taken in the sport catch. A total of 44 numbered Petersen and jaw tags were recovered from both dead and live fish which had reached spawning areas. This number includes three tags recovered from the spawning grounds of adjacent streams. When the tagged fish were examined according to areas recovered, it was found that Drift Creek had a smaller number of fish per tag than any other area with one exception. Recoveries appeared to be distributed throughout the drainage from any particular time of tagging. Fish enter the lower river together, then separate to the various spawning areas in the system. Several fish moved from the tagging location in the Alsea River to adjacent streams. About 7 percent of the total recoveries in Table 12 were made from streams other than the Alsea River. The Petersen and jaw tag recoveries in the samples of the commercial catch were examined for selection of the Petersen tags by the nets. The percentage by size group in the catch of fish with each type of tag was about the same as the percentage by size group with each type of tag at the time of release. Large losses of tags in the fishery would have been reflected by a higher number of fish per tag on the spawning grounds. Since the gill-nets did not appear to be selective on either type of tag, the Petersen tags, jaw tags, and tag scars were combined in the calculations involving tag recoveries. After the fish moved beyond the fishing area, many still did not move rapidly to the spawning grounds. Several were taken in tidewater or in the vicinity of tidewater 48-58 days after they had been tagged. The average time between tagging and recovery on the spawning grounds was 63 days for live fish and 70 days for dead fish. Using the method proposed by Schaefer (1951a) for obtaining a population estimate from spawning ground recoveries, an estimate of the population available to the fishery was made from the number of tags recovered by sampling the commercial catch. It was calculated that approximately 90,000 fish were available to the fishery. About 89,000 fish were calculated to be available to the fishery when the equation N = nt/s was used, where N = the population, n = the sample size, t = the number of fish tagged, and s = the number of tag recoveries. The 95 percent limits of confidence for the population estimate derived from the equation N = nt/s were calculated using the method developed by Chapman (1948). The lower limit was found to be 63,736 fish, and the upper limit was 119,371 fish. Approximately 63,000 of the fish available to the commercial fishery continued the migration to the spawning grounds. Spawning ground tag recoveries provided an estimate of the population in the lower river which was in close agreement with the estimate of the population made from tag recoveries in the commercial fishery. Close

• 92. [Article] Designing a Monitoring Program to Estimate Estuarine Survival of Anadromous Salmon Smolts: Simulating the Effect of Sample Design on Inference

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library ...

  Citation × Citation Citation Abstract Copy Title: Designing a Monitoring Program to Estimate Estuarine Survival of Anadromous Salmon Smolts: Simulating the Effect of Sample Design on Inference Author: Schreck, Carl B., Gitelman, Alix I., Romer, Jeremy D., Clements, Shaun To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library of Science and is in the public domain. The published article can be found at: http://www.plosone.org/. Title: Designing a Monitoring Program to Estimate Estuarine Survival of Anadromous Salmon Smolts: Simulating the Effect of Sample Design on Inference Author: Schreck, Carl B., Gitelman, Alix I., Romer, Jeremy D., Clements, Shaun To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article was published by the Public Library of Science and is in the public domain. The published article can be found at: http://www.plosone.org/. Close

• 93. [Article] Effective size of a wild salmonid population is greatly reduced by hatchery supplementation

  This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the ...

  Citation × Citation Citation Abstract Copy Title: Effective size of a wild salmonid population is greatly reduced by hatchery supplementation Author: Blouin, M. S., French, R. A., Marine, M. L., Christie, M. R., Waples, R. S. This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: Effective size of a wild salmonid population is greatly reduced by hatchery supplementation Author: Blouin, M. S., French, R. A., Marine, M. L., Christie, M. R., Waples, R. S. This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close

• 94. [Article] Arctic Char Fish Farming in Iceland: Is it a Success?

  Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, ...

  Citation × Citation Citation Abstract Copy Title: Arctic Char Fish Farming in Iceland: Is it a Success? Author: Arnason, Ragnar, Olafsdottir, Gudrun, Heimisson, Asgeir Fridrik Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Title: Arctic Char Fish Farming in Iceland: Is it a Success? Author: Arnason, Ragnar, Olafsdottir, Gudrun, Heimisson, Asgeir Fridrik Year: 2016 Suggested Bibliographic Reference: Challenging New Frontiers in the Global Seafood Sector: Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, July 11-15, 2016. Compiled by Stefani J. Evers and Ann L. Shriver. International Institute of Fisheries Economics and Trade (IIFET), Corvallis, 2016. Close

• 95. [Article] The intrusion of logging debris into artificial gravel streambeds

  The objective of this study was to quantitatively describe the intrusion of logging debris into artificial gravel streambeds during conditions of low stream flow with a stable streambed, and begin an analysis ...

  Citation × Citation Citation Abstract Copy Title: The intrusion of logging debris into artificial gravel streambeds Author: Garvin, William Fredrick The objective of this study was to quantitatively describe the intrusion of logging debris into artificial gravel streambeds during conditions of low stream flow with a stable streambed, and begin an analysis of the effect of high flow and unstable streambeds. This study was initiated because prior studies indicated that logging debris was responsible for dissolved oxygen reduction within the gravel bed of spawning streams. Low flow -- stable streambed studies were run for eighteen to twenty days in a flume. Two control samples of the gravel were taken. Logging slash was then placed on the gravel in volumes approximating those of logged streams. A sample was taken every other day for eighteen to twenty days using a device which froze a core of the streambed gravel. Since there were many problems with vandalism and weather, only two low flow replications were completed. shows the large random error which occurs even in the deeper sections. The range of debris concentrations of the two deeper sections for low flow studies one and two were .07 gm/l and .15 gm/l respectively. The average concentration values for low flow studies one and two were .03 gm/l and .02 gm/l respectively. No variables in the high flow study were found to be good predictors of intrusion. Natural random error and the extreme variability of this dynamic system were too great to draw even general conclusions. The range of concentrations of high flow studies one and two were .14 gm/l and .04 gm/l respectively. The average concentration values for high flow studies one and two were .01 gm/l and .02 gm/l respectively. Beneath the armour layer, the streambed exhibits less variability, but the large random error is sufficient to make prediction of intrusion difficult. During high flow periods where the streambed is moving, no predictive equation could be developed to estimate organic material release or incorporation owing to the large variability existing in the system. Title: The intrusion of logging debris into artificial gravel streambeds Author: Garvin, William Fredrick The objective of this study was to quantitatively describe the intrusion of logging debris into artificial gravel streambeds during conditions of low stream flow with a stable streambed, and begin an analysis of the effect of high flow and unstable streambeds. This study was initiated because prior studies indicated that logging debris was responsible for dissolved oxygen reduction within the gravel bed of spawning streams. Low flow -- stable streambed studies were run for eighteen to twenty days in a flume. Two control samples of the gravel were taken. Logging slash was then placed on the gravel in volumes approximating those of logged streams. A sample was taken every other day for eighteen to twenty days using a device which froze a core of the streambed gravel. Since there were many problems with vandalism and weather, only two low flow replications were completed. shows the large random error which occurs even in the deeper sections. The range of debris concentrations of the two deeper sections for low flow studies one and two were .07 gm/l and .15 gm/l respectively. The average concentration values for low flow studies one and two were .03 gm/l and .02 gm/l respectively. No variables in the high flow study were found to be good predictors of intrusion. Natural random error and the extreme variability of this dynamic system were too great to draw even general conclusions. The range of concentrations of high flow studies one and two were .14 gm/l and .04 gm/l respectively. The average concentration values for high flow studies one and two were .01 gm/l and .02 gm/l respectively. Beneath the armour layer, the streambed exhibits less variability, but the large random error is sufficient to make prediction of intrusion difficult. During high flow periods where the streambed is moving, no predictive equation could be developed to estimate organic material release or incorporation owing to the large variability existing in the system. Close

• 96. [Article] In the midst of a revolution : science, fish culture, and the Oregon Game Commission, 1935-1949

  This thesis will address the transformation of biological sciences during the 1930s and 1940s and it effects on fisheries science. It will focus on Oregon State College and specifically the Department ...

  Citation × Citation Citation Abstract Copy Title: In the midst of a revolution : science, fish culture, and the Oregon Game Commission, 1935-1949 Author: Hahn, Linda This thesis will address the transformation of biological sciences during the 1930s and 1940s and it effects on fisheries science. It will focus on Oregon State College and specifically the Department of Fish and Game Management and the interaction with the Oregon Game Commission. Support for mutation theory and neo- Lamarckism lasted throughout this study's time frame. The resulting belief that the environment can directly affect species fitness could have been a factor in fisheries managers' support for fish hatcheries. Throughout this time frame the science of ecology was emerging, but the dominant science of agricultural breeding science within wildlife management took precedence over ecology. Two case studies show changing ideas about agricultural breeding science as applied to wildlife management. In the first case study, the debate concerning fishways over Bonneville Dam shows that fish hatcheries were counted on to mitigate the loss of salmon habitat due to construction, and to act as a failsafe should the fishways fail. When the 1934 Oregon Game Commission members failed to enthusiastically support the construction of the dam and the fishway plans, this thesis argues that the commission members were dismissed in 1935. The second case study addresses the actions of the Oregon Game Commission in placing some high dams on tributaries of the Willamette River, the Willamette Valley project. This thesis shows that the inclusion of ecological principles in the evaluation of fish hatcheries led the commission to oppose this project. For their opposition, this thesis argues that the 1949 Oregon Game Commission members were dismissed. In both cases, this thesis concludes that the federal funding of water development projects played an important role in the dismissals of both Oregon Game Commissions. In addition, the evolving nature of biological science during the 1 930s and 1940s shows that lingering beliefs in mutation theory and neo-Lamarckism would have supported the use of fish hatcheries as a scientifically acceptable solution to declines in fish runs within the scientific tradition of agricultural methods of breeding wildlife. Title: In the midst of a revolution : science, fish culture, and the Oregon Game Commission, 1935-1949 Author: Hahn, Linda This thesis will address the transformation of biological sciences during the 1930s and 1940s and it effects on fisheries science. It will focus on Oregon State College and specifically the Department of Fish and Game Management and the interaction with the Oregon Game Commission. Support for mutation theory and neo- Lamarckism lasted throughout this study's time frame. The resulting belief that the environment can directly affect species fitness could have been a factor in fisheries managers' support for fish hatcheries. Throughout this time frame the science of ecology was emerging, but the dominant science of agricultural breeding science within wildlife management took precedence over ecology. Two case studies show changing ideas about agricultural breeding science as applied to wildlife management. In the first case study, the debate concerning fishways over Bonneville Dam shows that fish hatcheries were counted on to mitigate the loss of salmon habitat due to construction, and to act as a failsafe should the fishways fail. When the 1934 Oregon Game Commission members failed to enthusiastically support the construction of the dam and the fishway plans, this thesis argues that the commission members were dismissed in 1935. The second case study addresses the actions of the Oregon Game Commission in placing some high dams on tributaries of the Willamette River, the Willamette Valley project. This thesis shows that the inclusion of ecological principles in the evaluation of fish hatcheries led the commission to oppose this project. For their opposition, this thesis argues that the 1949 Oregon Game Commission members were dismissed. In both cases, this thesis concludes that the federal funding of water development projects played an important role in the dismissals of both Oregon Game Commissions. In addition, the evolving nature of biological science during the 1 930s and 1940s shows that lingering beliefs in mutation theory and neo-Lamarckism would have supported the use of fish hatcheries as a scientifically acceptable solution to declines in fish runs within the scientific tradition of agricultural methods of breeding wildlife. Close

• 97. [Article] Survival and behavior of juvenile steelhead trout (Oncorhynchus mykiss) in two small estuaries in Oregon

  A number of steelhead (Oncorhynchus mykiss) populations are at risk throughout Oregon, including five populations that are federally listed as threatened or endangered. However, little is known about behavior ...

  Citation × Citation Citation Abstract Copy Title: Survival and behavior of juvenile steelhead trout (Oncorhynchus mykiss) in two small estuaries in Oregon Author: Romer, Jeremy D. A number of steelhead (Oncorhynchus mykiss) populations are at risk throughout Oregon, including five populations that are federally listed as threatened or endangered. However, little is known about behavior and survival of these fish as they transition from freshwater to seawater. We investigated whether estuarine survival varies on a temporal scale within or between years, on a spatial scale between zones within the estuary, and between basins within the same distinct population segment. We implanted acoustic transmitters on 69 wild steelhead smolts in the Nehalem basin and 70 in the Alsea basin and compared run timing, migration rate, and estuarine residence times between basins. We also measured gill ATP-ase levels and parasite loads in each basin to evaluate the relationship between these indices and migration timing, life history strategy or age of smoltification. In general, only 40-50% of the wild steelhead smolts tagged at upstream smolt traps were detected entering the ocean, although survival was highly variable among years. The majority of "mortality" occurred in the lower estuary near the mouth. Wild steelhead smolts spent a median of 0.72 and 0.83 d in the estuary in the Nehalem and Alsea basin, respectively, in 2009. This research provides a baseline by which we can monitor temporal changes in the survival and behavior of juvenile salmon in the estuary. Such information is vital for monitoring the impact of estuarine restoration and reiterates the importance of the lower river and estuary environment for smolt survival. Title: Survival and behavior of juvenile steelhead trout (Oncorhynchus mykiss) in two small estuaries in Oregon Author: Romer, Jeremy D. A number of steelhead (Oncorhynchus mykiss) populations are at risk throughout Oregon, including five populations that are federally listed as threatened or endangered. However, little is known about behavior and survival of these fish as they transition from freshwater to seawater. We investigated whether estuarine survival varies on a temporal scale within or between years, on a spatial scale between zones within the estuary, and between basins within the same distinct population segment. We implanted acoustic transmitters on 69 wild steelhead smolts in the Nehalem basin and 70 in the Alsea basin and compared run timing, migration rate, and estuarine residence times between basins. We also measured gill ATP-ase levels and parasite loads in each basin to evaluate the relationship between these indices and migration timing, life history strategy or age of smoltification. In general, only 40-50% of the wild steelhead smolts tagged at upstream smolt traps were detected entering the ocean, although survival was highly variable among years. The majority of "mortality" occurred in the lower estuary near the mouth. Wild steelhead smolts spent a median of 0.72 and 0.83 d in the estuary in the Nehalem and Alsea basin, respectively, in 2009. This research provides a baseline by which we can monitor temporal changes in the survival and behavior of juvenile salmon in the estuary. Such information is vital for monitoring the impact of estuarine restoration and reiterates the importance of the lower river and estuary environment for smolt survival. Close

• 98. [Article] Modeling the impact of logging debris on the dissolved oxygen balance of small mountain streams

  Previous research has indicated that considerable amounts of finely divided slash accumulate in small mountain streams following timber harvesting. The subsequent biological decomposition of this organic ...

  Citation × Citation Citation Abstract Copy Title: Modeling the impact of logging debris on the dissolved oxygen balance of small mountain streams Author: Berry, John David Previous research has indicated that considerable amounts of finely divided slash accumulate in small mountain streams following timber harvesting. The subsequent biological decomposition of this organic matter can result i.n the reduction of dissolved oxygen (DO) concentration to levels as low as 0.6 ppm. These DO levels are lethal to the salmon and trout fry which inhabit these waters during the summer months. The purpose of this study was to verify the results of previous research on the biochemical oxygen demand (BOD) characteristics of Douglas-fir needles, western hemlock needles, and red alder leaves, and to develop an oxygen balance model to describe the effect of logging debris BOD on the dissolved oxygen of small mountain streams. The concept of the leaching process was examined and refined. As a result K₄, the leaching rate constant, was introduced to describe the addition of leachate to the stream. This necessitated redefining K₁, the first order decay rate constant, as it had been reported in previous studies. Slash may be described by its ultimate oxygen demand, or potential BOD, and two rate constants, K₁ and K₄. Manometric BOD tests were run for 20-day periods to estimate the potential BOD and the rate constants K₁ and K₄. The 20-day ultimate BOD, K₁ and K₄ estimates at 20°C were: 139mg 0₂ /gm (dry weight), 0.266 and 0.189 per day for Douglas-fir needles, 183mg 0₂/gm (dry weight), 0.202 and 0.089 per day for western hemlock needles, and 226 mg 0₂/gm (dry weight), 0.121 and 0.141 per day for red alder leaves. Laboratory experiments designed to examine the possibilities of occurrence and impact of nitrification on the oxygen demand curve concluded that even though it is possible to observe nitrification under special conditions, coastal streams are generally too nitrogen and carbon poor for nitrification to exert a significant oxygen demand. Even with the addition of large amounts of vegetation to the stream water, an available form of nitrogen must be added to produce detectable amounts of nitrogenous oxygen demand. It was found that the presence of nitrification cannot be detected in small mountain streams by nitrate analysis because of rapid fixation of nitrogen. Thus, the nitrification process appears to be of more concern for evaluating nutrient pathways and fixation than oxygen demand. The leachate of the Douglas-firs western hemlock, and red alder vegetation was analyzed for sugar and phenol concentration and rate of leaching. The vegetation was gas sterilized using ethylene oxide. The sterile vegetation was placed in autoclaved aliquots of water and sealed. The leachate of each vegetation type was analyzed at periodic intervals over 90 days, and the leachate expressed in glucose and gallic acid equivalents. Of the 120 samples treated, only one showed signs of contamination. The sugar and phenolic release rate constants for Douglas-fir and western hemlock were very similar; 0.049 and 0.062 for Douglas-fir sugars and phenols respectively and 0.060 and 0.046 for western hemlock sugars and phenols. All of these rates are less than the leaching rates derived by BOD experimentation. These differences may be due to biological interaction in the leaching process. The leaching rate constants for red alder leaves were much higher than the experimental rates, 0.88 and 0.187 for sugars and phenols respectively. The mean maximum sugar concentration was: 117 mg glucose equivalent / gm (dry weight) for Douglas-fir needles, 86 mg glucose equivalents / gm (dry weight) for western hemlock needles, 121 mg glucose equivalents / gm (dry weight) for red alder leaves, and 50 mg glucose equivalent/gm (dry weight) for dissected Douglas-fir twigs. No rate constant was computed for Douglas-fir twigs because of the lack of fit to an exponential function. Experimentation of the effects of temperature showed & significant response of potential BOD, K₁ and K₄ to variations in water temperature from 15 to 27°C. In general, ultimate BOD, K₁ and K₄ values increased with increasing water temperature. The effect of mass concentration on ultimate BOD, K₁ and K₄ were negligible for vegetative loadings of 4 to 16 gm, fresh weight per liter. The second phase of this study involved constructing a finite difference model of the dissolved oxygen balance in small mountain streams. A fixed cell approach was used to demonstrate the negligible effects of dispersion on pollutant and oxygen concentration. This then allowed the use of the much more efficient Lagrange variation of the finite difference modeling technique, utilizing a moving cell. By using available data and estimates of the distribution of slash in a simulated stream following clearcutting along 991 ft of the stream, DO levels as low as 5.72 ppm were computed for the simulated stream 5890 ft below the top of the clearcut. At these DO concentrations, salmon and trout fry experience "critical" stress conditions. Further model runs indicated that by reducing the length of the clearcut or by removing a portion of slash this condition could be avoided. Title: Modeling the impact of logging debris on the dissolved oxygen balance of small mountain streams Author: Berry, John David Previous research has indicated that considerable amounts of finely divided slash accumulate in small mountain streams following timber harvesting. The subsequent biological decomposition of this organic matter can result i.n the reduction of dissolved oxygen (DO) concentration to levels as low as 0.6 ppm. These DO levels are lethal to the salmon and trout fry which inhabit these waters during the summer months. The purpose of this study was to verify the results of previous research on the biochemical oxygen demand (BOD) characteristics of Douglas-fir needles, western hemlock needles, and red alder leaves, and to develop an oxygen balance model to describe the effect of logging debris BOD on the dissolved oxygen of small mountain streams. The concept of the leaching process was examined and refined. As a result K₄, the leaching rate constant, was introduced to describe the addition of leachate to the stream. This necessitated redefining K₁, the first order decay rate constant, as it had been reported in previous studies. Slash may be described by its ultimate oxygen demand, or potential BOD, and two rate constants, K₁ and K₄. Manometric BOD tests were run for 20-day periods to estimate the potential BOD and the rate constants K₁ and K₄. The 20-day ultimate BOD, K₁ and K₄ estimates at 20°C were: 139mg 0₂ /gm (dry weight), 0.266 and 0.189 per day for Douglas-fir needles, 183mg 0₂/gm (dry weight), 0.202 and 0.089 per day for western hemlock needles, and 226 mg 0₂/gm (dry weight), 0.121 and 0.141 per day for red alder leaves. Laboratory experiments designed to examine the possibilities of occurrence and impact of nitrification on the oxygen demand curve concluded that even though it is possible to observe nitrification under special conditions, coastal streams are generally too nitrogen and carbon poor for nitrification to exert a significant oxygen demand. Even with the addition of large amounts of vegetation to the stream water, an available form of nitrogen must be added to produce detectable amounts of nitrogenous oxygen demand. It was found that the presence of nitrification cannot be detected in small mountain streams by nitrate analysis because of rapid fixation of nitrogen. Thus, the nitrification process appears to be of more concern for evaluating nutrient pathways and fixation than oxygen demand. The leachate of the Douglas-firs western hemlock, and red alder vegetation was analyzed for sugar and phenol concentration and rate of leaching. The vegetation was gas sterilized using ethylene oxide. The sterile vegetation was placed in autoclaved aliquots of water and sealed. The leachate of each vegetation type was analyzed at periodic intervals over 90 days, and the leachate expressed in glucose and gallic acid equivalents. Of the 120 samples treated, only one showed signs of contamination. The sugar and phenolic release rate constants for Douglas-fir and western hemlock were very similar; 0.049 and 0.062 for Douglas-fir sugars and phenols respectively and 0.060 and 0.046 for western hemlock sugars and phenols. All of these rates are less than the leaching rates derived by BOD experimentation. These differences may be due to biological interaction in the leaching process. The leaching rate constants for red alder leaves were much higher than the experimental rates, 0.88 and 0.187 for sugars and phenols respectively. The mean maximum sugar concentration was: 117 mg glucose equivalent / gm (dry weight) for Douglas-fir needles, 86 mg glucose equivalents / gm (dry weight) for western hemlock needles, 121 mg glucose equivalents / gm (dry weight) for red alder leaves, and 50 mg glucose equivalent/gm (dry weight) for dissected Douglas-fir twigs. No rate constant was computed for Douglas-fir twigs because of the lack of fit to an exponential function. Experimentation of the effects of temperature showed & significant response of potential BOD, K₁ and K₄ to variations in water temperature from 15 to 27°C. In general, ultimate BOD, K₁ and K₄ values increased with increasing water temperature. The effect of mass concentration on ultimate BOD, K₁ and K₄ were negligible for vegetative loadings of 4 to 16 gm, fresh weight per liter. The second phase of this study involved constructing a finite difference model of the dissolved oxygen balance in small mountain streams. A fixed cell approach was used to demonstrate the negligible effects of dispersion on pollutant and oxygen concentration. This then allowed the use of the much more efficient Lagrange variation of the finite difference modeling technique, utilizing a moving cell. By using available data and estimates of the distribution of slash in a simulated stream following clearcutting along 991 ft of the stream, DO levels as low as 5.72 ppm were computed for the simulated stream 5890 ft below the top of the clearcut. At these DO concentrations, salmon and trout fry experience "critical" stress conditions. Further model runs indicated that by reducing the length of the clearcut or by removing a portion of slash this condition could be avoided. Close

• 99. [Article] The value of short run in-stream temperature forecasts : an application to salmonids in the Klamath and John Day Rivers

  Water temperature is an important measure of water quality, as well as a dominant factor affecting aquatic life within the stream environment. Elevated water temperatures can decrease the survival rate ...

  Citation × Citation Citation Abstract Copy Title: The value of short run in-stream temperature forecasts : an application to salmonids in the Klamath and John Day Rivers Author: Huang, Biao Water temperature is an important measure of water quality, as well as a dominant factor affecting aquatic life within the stream environment. Elevated water temperatures can decrease the survival rate of fish in each life stage. Cold water species, such as salmonids, are particularly susceptible to elevated water temperatures. For example, increased water temperatures are believed to have been the major cause of the large fish kill observed in the Klamath River in September 2002. This thesis examines the economic value of short-term water temperature forecasts for salmonid management. Forecasts may have value if they allow the water resource manager to make more cost-effective water allocation decisions. Specifically, this study considers two applications. One is the case of adult Chinook salmon (O. tshawytscha) returning to the Lower Klamath River in California, where cold water could be released upstream from the Lewiston Dam into the Trinity River to lower The Klamath River water temperature. Water releases create opportunity costs because of foregone hydropower production and crop irrigation. The second application is to juvenile summer steelhead (Oncorhynchus mykiss) in the North Fork John Day River, where water could be purchased from agricultural uses to prevent excessive water temperature increases. This generates opportunity costs in the form of lower crop yields. This thesis incorporates bio-physical models and water temperature distribution data into a Bayesian framework to simulate the potential fish populations after ten generations and the corresponding opportunity cost of water under different forecast accuracies. Simulation results indicate that the marginal cost in the Klamath River decreases from about $80 per fish saved when the forecast standard deviation is 6 to about $40 when the forecast standard deviation is 0(perfect forecast). In the John Day River the marginal cost per fish decreases from $34 for a standard deviation of 6 to $29 for a standard deviation of 0. A key result of the thesis is the pattern of decreasing marginal costs as the forecast accuracy increases, suggesting that provision and use of such stream temperature forecasts would have value to society. Title: The value of short run in-stream temperature forecasts : an application to salmonids in the Klamath and John Day Rivers Author: Huang, Biao Water temperature is an important measure of water quality, as well as a dominant factor affecting aquatic life within the stream environment. Elevated water temperatures can decrease the survival rate of fish in each life stage. Cold water species, such as salmonids, are particularly susceptible to elevated water temperatures. For example, increased water temperatures are believed to have been the major cause of the large fish kill observed in the Klamath River in September 2002. This thesis examines the economic value of short-term water temperature forecasts for salmonid management. Forecasts may have value if they allow the water resource manager to make more cost-effective water allocation decisions. Specifically, this study considers two applications. One is the case of adult Chinook salmon (O. tshawytscha) returning to the Lower Klamath River in California, where cold water could be released upstream from the Lewiston Dam into the Trinity River to lower The Klamath River water temperature. Water releases create opportunity costs because of foregone hydropower production and crop irrigation. The second application is to juvenile summer steelhead (Oncorhynchus mykiss) in the North Fork John Day River, where water could be purchased from agricultural uses to prevent excessive water temperature increases. This generates opportunity costs in the form of lower crop yields. This thesis incorporates bio-physical models and water temperature distribution data into a Bayesian framework to simulate the potential fish populations after ten generations and the corresponding opportunity cost of water under different forecast accuracies. Simulation results indicate that the marginal cost in the Klamath River decreases from about $80 per fish saved when the forecast standard deviation is 6 to about $40 when the forecast standard deviation is 0(perfect forecast). In the John Day River the marginal cost per fish decreases from $34 for a standard deviation of 6 to $29 for a standard deviation of 0. A key result of the thesis is the pattern of decreasing marginal costs as the forecast accuracy increases, suggesting that provision and use of such stream temperature forecasts would have value to society. Close

• 100. [Article] The relationships between fluctuations in oceanographic conditions, forage fishes, predatory fishes, predator food habits, and juvenile salmonid marine survival off the Columbia River

  Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other ...

  Citation × Citation Citation Abstract Copy Title: The relationships between fluctuations in oceanographic conditions, forage fishes, predatory fishes, predator food habits, and juvenile salmonid marine survival off the Columbia River Author: Emmett, Robert L. Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other fishes. Changes in the biological and physical environment off the Columbia River region affects the distribution and abundance of predatory fishes and their feeding, forage fishes, and juvenile salmonid marine survival. From 1998-2004, forage fish and predatory fish distribution and abundance off the Columbia River was quantified by surface trawling at night during spring/summer. The effect of predation on salmonids was measured by stomach analysis of predatory fishes. During the study period (1998-2004), forage fishes increased in abundance by orders of magnitude and were strongly related to the abundance of cold-water copepods the previous year. Higher forage fish populations were also linked to cooler ocean conditions and perhaps fewer predatory Pacific hake (Merluccius productus). Most forage fishes were distributed nearshore while predators had a more offshore distribution. Pacific hake was most abundant in 1998, 2003, and 2004; warm ocean years. Jack mackerel (Trachurus symmetricus) was most abundant during 1999-2002; relatively cool ocean years. Deep (50-m) ocean temperatures and the date of the spring transition, when nearshore currents switched from northward to southward, were good predictors of Pacific hake abundance in the study area. Forage fish or salmonid occurrence in a haul was negatively related to the occurrence of predators. Pacific hake and jack mackerel ate primarily euphausiids and small fishes. Salmonids were rarely eaten by either predator. However, because the Pacific hake population can be very large, hake predation can be a significant source of juvenile salmon mortality off the Columbia River during some years. A trophic model showed that marine mortality of Columbia River juvenile salmonids may be related to the abundance of Pacific hake and forage fishes. A multiple regression using the predictions from the trophic model of annual numbers of juvenile salmonids eaten by hake and Columbia River spring flows as independent variables, accounted for much of the variation observed in the annual marine survival of Columbia River coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytscha), the dependent variable. Future research should identify the physical and biological forces that alter the feeding habits, migration and movements of Pacific hake and jack mackerel off the Northwest, and how Columbia River flows affect trophic interactions. Title: The relationships between fluctuations in oceanographic conditions, forage fishes, predatory fishes, predator food habits, and juvenile salmonid marine survival off the Columbia River Author: Emmett, Robert L. Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other fishes. Changes in the biological and physical environment off the Columbia River region affects the distribution and abundance of predatory fishes and their feeding, forage fishes, and juvenile salmonid marine survival. From 1998-2004, forage fish and predatory fish distribution and abundance off the Columbia River was quantified by surface trawling at night during spring/summer. The effect of predation on salmonids was measured by stomach analysis of predatory fishes. During the study period (1998-2004), forage fishes increased in abundance by orders of magnitude and were strongly related to the abundance of cold-water copepods the previous year. Higher forage fish populations were also linked to cooler ocean conditions and perhaps fewer predatory Pacific hake (Merluccius productus). Most forage fishes were distributed nearshore while predators had a more offshore distribution. Pacific hake was most abundant in 1998, 2003, and 2004; warm ocean years. Jack mackerel (Trachurus symmetricus) was most abundant during 1999-2002; relatively cool ocean years. Deep (50-m) ocean temperatures and the date of the spring transition, when nearshore currents switched from northward to southward, were good predictors of Pacific hake abundance in the study area. Forage fish or salmonid occurrence in a haul was negatively related to the occurrence of predators. Pacific hake and jack mackerel ate primarily euphausiids and small fishes. Salmonids were rarely eaten by either predator. However, because the Pacific hake population can be very large, hake predation can be a significant source of juvenile salmon mortality off the Columbia River during some years. A trophic model showed that marine mortality of Columbia River juvenile salmonids may be related to the abundance of Pacific hake and forage fishes. A multiple regression using the predictions from the trophic model of annual numbers of juvenile salmonids eaten by hake and Columbia River spring flows as independent variables, accounted for much of the variation observed in the annual marine survival of Columbia River coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytscha), the dependent variable. Future research should identify the physical and biological forces that alter the feeding habits, migration and movements of Pacific hake and jack mackerel off the Northwest, and how Columbia River flows affect trophic interactions. Close