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• 41. [Article] Patch dynamics of desert fishes in the arid wetlands of western Utah

  The conservation of declining desert fish species requires the identification of relations between fish population dynamics and their environments. Dynamic occupancy modeling, an approach that requires ...

  Citation × Citation Citation Abstract Copy Title: Patch dynamics of desert fishes in the arid wetlands of western Utah Author: Sáenz, Jessica The conservation of declining desert fish species requires the identification of relations between fish population dynamics and their environments. Dynamic occupancy modeling, an approach that requires less information than traditional mark-recapture studies, may help identify important factors affecting population processes and aid desert fish conservation and restoration efforts. I used dynamic multi-season occupancy models for two analyses (multi-state and multi-species) to evaluate the influence of patch-level characteristics (patch percent open water, average patch depth, patch area), grazing damage, species interactions, population differences, patch connectivity and environmental variation (seasonal precipitation and temperature) on the patch dynamics (colonization, persistence, reproduction) of two desert chub species found in Snake Valley, UT. My results indicate that there was the strongest evidence according to model weights that patch dynamics in this system were influenced by patch-level characteristics (patch percent open water and average patch depth), grazing damage, population differences, biotic interactions, and winter precipitation rather than landscape level features such as connectivity. I observed positive effects of patch percent open water and average patch depth on least chub and Utah chub persistence. I also found that grazing damage increased their persistence at the medium damage level but decreased least chub and Utah chub colonization at the high grazing damage level. Least chub and Utah chub colonization varied between the two populations (study areas) with a higher probability of colonization at Bishop Springs than at Gandy Salt Marsh. In addition, I found some evidence that biotic interactions between least chub and Utah chub may be occurring in this system. Least chub were less likely to colonize patches previously occupied by Utah chub but surprisingly there was little evidence that these species interactions affected least chub persistence. Least chub reproduction increased with winter precipitation and was higher at Gandy Salt Marsh than Bishop Springs. The use of dynamic occupancy modeling in desert spring wetland complexes may provide a valuable tool for managers tasked with conserving at-risk desert fish species. Title: Patch dynamics of desert fishes in the arid wetlands of western Utah Author: Sáenz, Jessica The conservation of declining desert fish species requires the identification of relations between fish population dynamics and their environments. Dynamic occupancy modeling, an approach that requires less information than traditional mark-recapture studies, may help identify important factors affecting population processes and aid desert fish conservation and restoration efforts. I used dynamic multi-season occupancy models for two analyses (multi-state and multi-species) to evaluate the influence of patch-level characteristics (patch percent open water, average patch depth, patch area), grazing damage, species interactions, population differences, patch connectivity and environmental variation (seasonal precipitation and temperature) on the patch dynamics (colonization, persistence, reproduction) of two desert chub species found in Snake Valley, UT. My results indicate that there was the strongest evidence according to model weights that patch dynamics in this system were influenced by patch-level characteristics (patch percent open water and average patch depth), grazing damage, population differences, biotic interactions, and winter precipitation rather than landscape level features such as connectivity. I observed positive effects of patch percent open water and average patch depth on least chub and Utah chub persistence. I also found that grazing damage increased their persistence at the medium damage level but decreased least chub and Utah chub colonization at the high grazing damage level. Least chub and Utah chub colonization varied between the two populations (study areas) with a higher probability of colonization at Bishop Springs than at Gandy Salt Marsh. In addition, I found some evidence that biotic interactions between least chub and Utah chub may be occurring in this system. Least chub were less likely to colonize patches previously occupied by Utah chub but surprisingly there was little evidence that these species interactions affected least chub persistence. Least chub reproduction increased with winter precipitation and was higher at Gandy Salt Marsh than Bishop Springs. The use of dynamic occupancy modeling in desert spring wetland complexes may provide a valuable tool for managers tasked with conserving at-risk desert fish species. Close

• 42. [Article] Habitat selection by Greater Sage-Grouse during winter in southeastern Oregon

  This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University and can be found at: https://ojs.lib.byu.edu/wnan/index.php/wnan/. To the best of our knowledge, one ...

  Citation × Citation Citation Abstract Copy Title: Habitat selection by Greater Sage-Grouse during winter in southeastern Oregon Author: Hagen, Christian A., Glenn, Elizabeth M., Anthony, Robert G., Willis, Mitchell J. This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University and can be found at: https://ojs.lib.byu.edu/wnan/index.php/wnan/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: Habitat selection by Greater Sage-Grouse during winter in southeastern Oregon Author: Hagen, Christian A., Glenn, Elizabeth M., Anthony, Robert G., Willis, Mitchell J. This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University and can be found at: https://ojs.lib.byu.edu/wnan/index.php/wnan/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close

• 43. [Article] Habitat Selection by Greater Sage-Grouse During Winter in Southeastern Oregon

  This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University, Monte L Bean Life Science Museau and can be found at: https://ojs.lib.byu.edu/spc/index.php/wnan

  Citation × Citation Citation Abstract Copy Title: Habitat Selection by Greater Sage-Grouse During Winter in Southeastern Oregon Author: Hagen, Christian A., Glenn, Elizabeth M., Anthony, Robert G., Willis, Mitchell J. This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University, Monte L Bean Life Science Museau and can be found at: https://ojs.lib.byu.edu/spc/index.php/wnan Title: Habitat Selection by Greater Sage-Grouse During Winter in Southeastern Oregon Author: Hagen, Christian A., Glenn, Elizabeth M., Anthony, Robert G., Willis, Mitchell J. This is the publisher’s final pdf. The published article is copyrighted by Brigham Young University, Monte L Bean Life Science Museau and can be found at: https://ojs.lib.byu.edu/spc/index.php/wnan Close

• 44. [Article] Performance of Willamette Valley native plants following herbicide exposure

  Prairies were once the dominant vegetation type in Oregon's Willamette Valley. Land use conversion, fire suppression, succession, and invasive species have reduced Willamette Valley prairies to less than ...

  Citation × Citation Citation Abstract Copy Title: Performance of Willamette Valley native plants following herbicide exposure Author: Blakeley-Smith, Matthew R. Prairies were once the dominant vegetation type in Oregon's Willamette Valley. Land use conversion, fire suppression, succession, and invasive species have reduced Willamette Valley prairies to less than 1% of their historical area. The remnant prairies that persist today are small in size and are highly fragmented. Marginal strips of habitat along roadsides and agricultural fields play an important role as refugia for native species and provide important resources for wildlife. These seemingly insignificant habitat units may also play an important role in facilitating gene flow between disjunct populations of prairie plants, thus reducing the potential for the negative effects of inbreeding depression. Presently, much of the land area in the Willamette Valley is dedicated to commercial agricultural which is heavily reliant on herbicides for weed control and field preparation. Since herbicide applications are imprecise and prone to drift, there is potential to impact the native plants surrounding these agricultural fields. Current EPA methods for assessing the ecological effects of herbicides may not be robust enough to account for potential impacts on native plants since the suggested test species are ten annual agricultural crops. To address the need for improved phytotoxicity testing protocols, we incorporated non-crop plant species into the EPA vegetative vigor test methodology for use in determining effects of low concentrations of chemical herbicides on Willamette Valley terrestrial plants. A separate experiment was conducted in order to determine how herbicides might be used to restore Butterfly Meadows, a degraded Willamette Valley prairie. The specific objective of this study were to: 1.) determine which herbicide treatments were most effective at reducing dominance of an invasive species, Brachypodium sylvaticum, 2.) determine if native species declined following herbicide treatments, and 3.) describe the compositional changes in the plant communities over a four-year period. The EPA vegetative vigor test study showed that there was a wide variety of responses among 17 species (14 native and 3 introduced) to each herbicide tested (glyphosate, tribenuron, and fluazifop). For glyphosate, Potentilla gracilis was the most sensitive species based on an EC25 value of 0.012 x f.a.r. for dry weight; while Bromus carinatus, Clarkia amoena, Gilia capitata, and Lupinus albicaulis were tolerant to glyphosate as indicated by no effect on dry weight. Seven Willamette Valley forb species were sensitive to tribenuron based on EC25 values ranging from 0.001 to 0.012 x f.a.r.; Clarkia amoena, Collinsia grandflora, Leucanthemum vulgare, Potentilla gracilis, Prunella vulgaris, Ranunculus occidentalis and Sanquisorba occidentalis. Six grass species and Eriophyllum lanatum were resistant to tribenuron showing no reduction in dry weight. Fluazifop primarily affected grass species as expected due to the grass-specific activity for this herbicide. Two native grasses, Elymus trachycaulus and Danthonia californica were the most sensitive to fluazifop, based on low EC25 values of 0.002 to 0.010 x f.a.r. A native fescue grass, Festuca roemeri, and nearly all the forb species were resistant to fluazifop, showing no response at any herbicide rate applied. The results from this research will be useful as background information for evaluating potential modifications in the EPA's Vegetative Vigor Test to assess the risk of herbicides to non-target plants. Seven different herbicide combinations were effective at reducing the cover of Brachypodium sylvaticum in test plots at Butterfly Meadows one year after treatment. The reduction of B. sylvaticum was short lived however, since the cover of this grass species was not different from control plots during the second growing season. Native plant species were not negatively impacted by the herbicide treatments, as shown by MRPP analysis. Successional trajectories illustrate that control plots that were dominated by B. sylvaticum remained relatively unchanged over the course of four years. Some treatments exhibited a sharp decline in dominance by graminoids after the first year, a recovery the second year, but never returned exactly to their pretreatment community composition after the third year. The reduction of the dominant species after the first growing season was associated with colonization by a number of introduced species into the newly created open habitat. Over the same period there was no overall increase in native species cover, suggesting that the native species at this site may be recruitment limited. Future restoration activities at this site should include multiple years of B. sylvaticum control, with special attention to the seed bank and tolerant individuals. Seed additions of native species may help fill empty niches and afford resistance to invasion by introduced species. Title: Performance of Willamette Valley native plants following herbicide exposure Author: Blakeley-Smith, Matthew R. Prairies were once the dominant vegetation type in Oregon's Willamette Valley. Land use conversion, fire suppression, succession, and invasive species have reduced Willamette Valley prairies to less than 1% of their historical area. The remnant prairies that persist today are small in size and are highly fragmented. Marginal strips of habitat along roadsides and agricultural fields play an important role as refugia for native species and provide important resources for wildlife. These seemingly insignificant habitat units may also play an important role in facilitating gene flow between disjunct populations of prairie plants, thus reducing the potential for the negative effects of inbreeding depression. Presently, much of the land area in the Willamette Valley is dedicated to commercial agricultural which is heavily reliant on herbicides for weed control and field preparation. Since herbicide applications are imprecise and prone to drift, there is potential to impact the native plants surrounding these agricultural fields. Current EPA methods for assessing the ecological effects of herbicides may not be robust enough to account for potential impacts on native plants since the suggested test species are ten annual agricultural crops. To address the need for improved phytotoxicity testing protocols, we incorporated non-crop plant species into the EPA vegetative vigor test methodology for use in determining effects of low concentrations of chemical herbicides on Willamette Valley terrestrial plants. A separate experiment was conducted in order to determine how herbicides might be used to restore Butterfly Meadows, a degraded Willamette Valley prairie. The specific objective of this study were to: 1.) determine which herbicide treatments were most effective at reducing dominance of an invasive species, Brachypodium sylvaticum, 2.) determine if native species declined following herbicide treatments, and 3.) describe the compositional changes in the plant communities over a four-year period. The EPA vegetative vigor test study showed that there was a wide variety of responses among 17 species (14 native and 3 introduced) to each herbicide tested (glyphosate, tribenuron, and fluazifop). For glyphosate, Potentilla gracilis was the most sensitive species based on an EC25 value of 0.012 x f.a.r. for dry weight; while Bromus carinatus, Clarkia amoena, Gilia capitata, and Lupinus albicaulis were tolerant to glyphosate as indicated by no effect on dry weight. Seven Willamette Valley forb species were sensitive to tribenuron based on EC25 values ranging from 0.001 to 0.012 x f.a.r.; Clarkia amoena, Collinsia grandflora, Leucanthemum vulgare, Potentilla gracilis, Prunella vulgaris, Ranunculus occidentalis and Sanquisorba occidentalis. Six grass species and Eriophyllum lanatum were resistant to tribenuron showing no reduction in dry weight. Fluazifop primarily affected grass species as expected due to the grass-specific activity for this herbicide. Two native grasses, Elymus trachycaulus and Danthonia californica were the most sensitive to fluazifop, based on low EC25 values of 0.002 to 0.010 x f.a.r. A native fescue grass, Festuca roemeri, and nearly all the forb species were resistant to fluazifop, showing no response at any herbicide rate applied. The results from this research will be useful as background information for evaluating potential modifications in the EPA's Vegetative Vigor Test to assess the risk of herbicides to non-target plants. Seven different herbicide combinations were effective at reducing the cover of Brachypodium sylvaticum in test plots at Butterfly Meadows one year after treatment. The reduction of B. sylvaticum was short lived however, since the cover of this grass species was not different from control plots during the second growing season. Native plant species were not negatively impacted by the herbicide treatments, as shown by MRPP analysis. Successional trajectories illustrate that control plots that were dominated by B. sylvaticum remained relatively unchanged over the course of four years. Some treatments exhibited a sharp decline in dominance by graminoids after the first year, a recovery the second year, but never returned exactly to their pretreatment community composition after the third year. The reduction of the dominant species after the first growing season was associated with colonization by a number of introduced species into the newly created open habitat. Over the same period there was no overall increase in native species cover, suggesting that the native species at this site may be recruitment limited. Future restoration activities at this site should include multiple years of B. sylvaticum control, with special attention to the seed bank and tolerant individuals. Seed additions of native species may help fill empty niches and afford resistance to invasion by introduced species. Close

• 45. [Article] Contrasting distribution patterns of invasive and naturalized non-native species along environmental gradients in a semi-arid montane ecosystem

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by International Association ...

  Citation × Citation Citation Abstract Copy Title: Contrasting distribution patterns of invasive and naturalized non-native species along environmental gradients in a semi-arid montane ecosystem Author: Andersen, Kelly M., Endress, Bryan A., Parks, Catherine G., Naylor, Bridgett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by International Association for Vegetation Science and published by John Wiley & Sons, Ltd.. It can be found at: http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291654-109X Title: Contrasting distribution patterns of invasive and naturalized non-native species along environmental gradients in a semi-arid montane ecosystem Author: Andersen, Kelly M., Endress, Bryan A., Parks, Catherine G., Naylor, Bridgett J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by International Association for Vegetation Science and published by John Wiley & Sons, Ltd.. It can be found at: http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291654-109X Close

• 46. [Article] The roles of provenance and phylogeny in recruitment, community assembly, and species coexistence in invaded California grasslands

  Biological invasions pose one of the greatest threats to global biodiversity, but many naturalized invaders coexist with the native community. Community ecology theory provides a framework for understanding ...

  Citation × Citation Citation Abstract Copy Title: The roles of provenance and phylogeny in recruitment, community assembly, and species coexistence in invaded California grasslands Author: Brandt, Angela J. Biological invasions pose one of the greatest threats to global biodiversity, but many naturalized invaders coexist with the native community. Community ecology theory provides a framework for understanding the mechanisms by which invaders might coexist with native species or exclude them from the community, thus informing management practices to maximize their effectiveness at conserving native biodiversity. Differences in functional or phylogenetic similarity of invaders to native residents can affect invasion success and the probability they will coexist with natives. For example, functionally dissimilar species may not compete strongly and distantly related species may share fewer natural enemies. Furthermore, environmental heterogeneity can promote species coexistence by providing the opportunity for a greater number of coexistence mechanisms to operate, thereby mitigating the potential for species invasions to lead to native extinction. My thesis examines how provenance (i.e., native origin) and phylogenetic relatedness of plant species affect community dynamics and species interactions in the invaded California grasslands. To do this I have assembled two unique community data sets, one spanning 48 years across a 1000-ha site and one spanning 7 years along a 500-km latitudinal transect. I show that native and exotic species abundance and diversity is highly variable in both time and space, but these provenance group responses are rarely negatively correlated (Chapter 2). Thus, exotic species do not generally appear to exclude natives from communities. Long-term abundance patterns further suggest that the system remains in a state of transience, and populations of several native species are declining at local scales (Chapter 3). Recruitment limitation due to the build-up of plant litter associated with exotic grasses may be generally responsible for these declines, but habitat suitability, land-use history, and community composition also affect native recruitment. Across the grasslands, disturbance and resource supply can interact to affect both species and phylogenetic diversity (Chapter 4). Disturbance in particular can increase diversity, likely by increasing opportunities for colonization by removing plant litter that previously limited recruitment. Both phylogeny and provenance can also affect biotic interactions, such as with communities of soil organisms (Chapter 5). Thus, I have shown that spatio-temporal heterogeneity, alterations to the biotic environment mediated by exotic invasion, and phylogenetic relationships among species are all important considerations when evaluating impacts of invasion and designing management strategies to conserve native biodiversity, especially in light of anthropogenic influence on disturbance regimes and resource supply. Title: The roles of provenance and phylogeny in recruitment, community assembly, and species coexistence in invaded California grasslands Author: Brandt, Angela J. Biological invasions pose one of the greatest threats to global biodiversity, but many naturalized invaders coexist with the native community. Community ecology theory provides a framework for understanding the mechanisms by which invaders might coexist with native species or exclude them from the community, thus informing management practices to maximize their effectiveness at conserving native biodiversity. Differences in functional or phylogenetic similarity of invaders to native residents can affect invasion success and the probability they will coexist with natives. For example, functionally dissimilar species may not compete strongly and distantly related species may share fewer natural enemies. Furthermore, environmental heterogeneity can promote species coexistence by providing the opportunity for a greater number of coexistence mechanisms to operate, thereby mitigating the potential for species invasions to lead to native extinction. My thesis examines how provenance (i.e., native origin) and phylogenetic relatedness of plant species affect community dynamics and species interactions in the invaded California grasslands. To do this I have assembled two unique community data sets, one spanning 48 years across a 1000-ha site and one spanning 7 years along a 500-km latitudinal transect. I show that native and exotic species abundance and diversity is highly variable in both time and space, but these provenance group responses are rarely negatively correlated (Chapter 2). Thus, exotic species do not generally appear to exclude natives from communities. Long-term abundance patterns further suggest that the system remains in a state of transience, and populations of several native species are declining at local scales (Chapter 3). Recruitment limitation due to the build-up of plant litter associated with exotic grasses may be generally responsible for these declines, but habitat suitability, land-use history, and community composition also affect native recruitment. Across the grasslands, disturbance and resource supply can interact to affect both species and phylogenetic diversity (Chapter 4). Disturbance in particular can increase diversity, likely by increasing opportunities for colonization by removing plant litter that previously limited recruitment. Both phylogeny and provenance can also affect biotic interactions, such as with communities of soil organisms (Chapter 5). Thus, I have shown that spatio-temporal heterogeneity, alterations to the biotic environment mediated by exotic invasion, and phylogenetic relationships among species are all important considerations when evaluating impacts of invasion and designing management strategies to conserve native biodiversity, especially in light of anthropogenic influence on disturbance regimes and resource supply. Close

• 47. [Article] Rapid endangered species assessment : a novel approach to improve extinction risk assessments in poorly known species

  The number of endangered species is rapidly increasing while paucity of adequate information and resources delays establishment of conservation actions. The IUCN’s listing system is insufficient to determine ...

  Citation × Citation Citation Abstract Copy Title: Rapid endangered species assessment : a novel approach to improve extinction risk assessments in poorly known species Author: Bianchi, Carlos A. The number of endangered species is rapidly increasing while paucity of adequate information and resources delays establishment of conservation actions. The IUCN’s listing system is insufficient to determine conservation priorities and many species lack information even to be evaluated (i.e., “data deficient”). Here I proposed and tested the Rapid Endangered Species Assessment approach, combining methods including distribution modeling, landscape/habitat availability analysis and an evaluation of population spatial structure to improve information about species of concern and make future extinction risk assessments more attainable. I used the Pfrimer’s Parakeet (Pyrrhura pfrimeri) an endemic Brazilian species, as a case study. I modeled and validated the potential distribution of the species, known to occur in association with the tropical dry forests in central Brazil, using the Maxent method. The model predicted potential occurrence in three regions in central Brazil. Field surveys used to validate model found the species at 17 sites, all located in the dry forests of the Paranã River Basin. Modeling results set boundaries for the analysis of loss and fragmentation of the species’ habitat. Satellite imagery and remote sensing techniques were used to estimate deforestation trends over a large spatiotemporal scale (31 years). Results indicated a 66.3% decrease in forest extent, average annual deforestation rate of 2.1% and significant increase in fragmentation, suggesting that these forests may disappear in less than 20 years if current deforestation rates persist. The habitat availability analysis set boundaries for the investigation of spatial arrangement of local populations of Pfrimer’s Parakeets, which was carried out by collecting information on abundance, densities estimates, species home range, and habitat use. Twenty individuals were monitored with radio transmitters and home range estimates averaged between 195.7 ha (fixed kernel) and 261.8 ha (minimum convex polygons). Habitat use was estimated with behavioral observations of birds flying through a mosaic of forests and pastures. I found no evidence that the species used open areas farther than 300m from the forest edge. Systematic line transects and observations of parakeets per time effort produced estimates of population densities at 11.7 individuals/km2; indicating strong variation in abundance indices among areas, suggesting a population decline. The Rapid Endangered Species Assessment represents a broad and integrative approach carried out over a short term and was successfully used to produce relevant data about a poorly known species. Thus, I propose the use of this approach as a minimally ideal yet scientifically viable method to generate information for extinction risk assessment of species. Title: Rapid endangered species assessment : a novel approach to improve extinction risk assessments in poorly known species Author: Bianchi, Carlos A. The number of endangered species is rapidly increasing while paucity of adequate information and resources delays establishment of conservation actions. The IUCN’s listing system is insufficient to determine conservation priorities and many species lack information even to be evaluated (i.e., “data deficient”). Here I proposed and tested the Rapid Endangered Species Assessment approach, combining methods including distribution modeling, landscape/habitat availability analysis and an evaluation of population spatial structure to improve information about species of concern and make future extinction risk assessments more attainable. I used the Pfrimer’s Parakeet (Pyrrhura pfrimeri) an endemic Brazilian species, as a case study. I modeled and validated the potential distribution of the species, known to occur in association with the tropical dry forests in central Brazil, using the Maxent method. The model predicted potential occurrence in three regions in central Brazil. Field surveys used to validate model found the species at 17 sites, all located in the dry forests of the Paranã River Basin. Modeling results set boundaries for the analysis of loss and fragmentation of the species’ habitat. Satellite imagery and remote sensing techniques were used to estimate deforestation trends over a large spatiotemporal scale (31 years). Results indicated a 66.3% decrease in forest extent, average annual deforestation rate of 2.1% and significant increase in fragmentation, suggesting that these forests may disappear in less than 20 years if current deforestation rates persist. The habitat availability analysis set boundaries for the investigation of spatial arrangement of local populations of Pfrimer’s Parakeets, which was carried out by collecting information on abundance, densities estimates, species home range, and habitat use. Twenty individuals were monitored with radio transmitters and home range estimates averaged between 195.7 ha (fixed kernel) and 261.8 ha (minimum convex polygons). Habitat use was estimated with behavioral observations of birds flying through a mosaic of forests and pastures. I found no evidence that the species used open areas farther than 300m from the forest edge. Systematic line transects and observations of parakeets per time effort produced estimates of population densities at 11.7 individuals/km2; indicating strong variation in abundance indices among areas, suggesting a population decline. The Rapid Endangered Species Assessment represents a broad and integrative approach carried out over a short term and was successfully used to produce relevant data about a poorly known species. Thus, I propose the use of this approach as a minimally ideal yet scientifically viable method to generate information for extinction risk assessment of species. Close

• 48. [Article] Marine bird colony and at-sea distributions along the Oregon coast: Implications for marine spatial planning and information gap analysis

  Increasingly diverse interests in commercial and recreational use of marine resources are creating new challenges for coastal ocean management. One concern of increased offshore use and development off ...

  Citation × Citation Citation Abstract Copy Title: Marine bird colony and at-sea distributions along the Oregon coast: Implications for marine spatial planning and information gap analysis Author: Lowe, Roy W., Suryan, Robert M., Phillips, Elizabeth M., Zamon, Jeannette E., So, Khemarith, Stephensen, Shawn W. Increasingly diverse interests in commercial and recreational use of marine resources are creating new challenges for coastal ocean management. One concern of increased offshore use and development off the Oregon coast is the potential impact on marine bird populations. We summarized the primary surveys of seabird breeding colonies and at-sea distribution along the Oregon coast to describe spatial patterns in species distribution and identify gaps where additional data are needed. The abundance of breeding birds during the summer (over 1 million in total, primarily Common Murre Uria aalge and Leach’s Storm-Petrel Oceanodroma leucorhoa) is greatest in northern and southern Oregon due to the availability of breeding habitat on large offshore rocks and islands. While there are fewer breeding colonies along sandy shorelines, the adjacent coastal waters are still frequented by breeding birds and nonbreeding migrants, but generally in lower densities during summer. Seabird density, and likely potential interaction with offshore structures, is greatest nearshore and steadily declines to lowest levels beyond the outer continental shelf. Dynamic soaring species, however, which have a greater potential to interact with taller structures such as wind turbines, tend to be more common on the middle to outer shelf. Species composition also changes dramatically among seasons. Low flying (< 30 m above sea level) diving species dominate in most seasons, however, which has potential conservation implications for interactions with structures above and below the water’s surface. Given the abundance of storm-petrels, increased light pollution is also a concern for these and other nocturnal, phototactic species. Dramatic declines or redistributions have occurred at some breeding colonies, indicating long-term planning should consider changing habitat requirements. The greatest data needs currently include fall/winter/spring at-sea distribution, summer distribution off southern Oregon, and more accurate estimates and monitoring of burrow-nesting seabirds. Oregon’s coastal waters provide habitat for a large portion of breeding and nonbreeding marine birds along the U.S. west coast and a thorough knowledge of their spatial distribution, seasonal abundance, and migration corridors is critical for well-informed marine spatial planning. Title: Marine bird colony and at-sea distributions along the Oregon coast: Implications for marine spatial planning and information gap analysis Author: Lowe, Roy W., Suryan, Robert M., Phillips, Elizabeth M., Zamon, Jeannette E., So, Khemarith, Stephensen, Shawn W. Increasingly diverse interests in commercial and recreational use of marine resources are creating new challenges for coastal ocean management. One concern of increased offshore use and development off the Oregon coast is the potential impact on marine bird populations. We summarized the primary surveys of seabird breeding colonies and at-sea distribution along the Oregon coast to describe spatial patterns in species distribution and identify gaps where additional data are needed. The abundance of breeding birds during the summer (over 1 million in total, primarily Common Murre Uria aalge and Leach’s Storm-Petrel Oceanodroma leucorhoa) is greatest in northern and southern Oregon due to the availability of breeding habitat on large offshore rocks and islands. While there are fewer breeding colonies along sandy shorelines, the adjacent coastal waters are still frequented by breeding birds and nonbreeding migrants, but generally in lower densities during summer. Seabird density, and likely potential interaction with offshore structures, is greatest nearshore and steadily declines to lowest levels beyond the outer continental shelf. Dynamic soaring species, however, which have a greater potential to interact with taller structures such as wind turbines, tend to be more common on the middle to outer shelf. Species composition also changes dramatically among seasons. Low flying (< 30 m above sea level) diving species dominate in most seasons, however, which has potential conservation implications for interactions with structures above and below the water’s surface. Given the abundance of storm-petrels, increased light pollution is also a concern for these and other nocturnal, phototactic species. Dramatic declines or redistributions have occurred at some breeding colonies, indicating long-term planning should consider changing habitat requirements. The greatest data needs currently include fall/winter/spring at-sea distribution, summer distribution off southern Oregon, and more accurate estimates and monitoring of burrow-nesting seabirds. Oregon’s coastal waters provide habitat for a large portion of breeding and nonbreeding marine birds along the U.S. west coast and a thorough knowledge of their spatial distribution, seasonal abundance, and migration corridors is critical for well-informed marine spatial planning. Close

• 49. [Article] Vegetation response following thinning in young Douglas-fir forests of western Oregon : can thinning accelerate development of late-successional structure and composition?

  Across western Oregon, Washington, and British Columbia, forest management practices over the past century reduced the amount of late-successional forest while simultaneously increasing the amount of young ...

  Citation × Citation Citation Abstract Copy Title: Vegetation response following thinning in young Douglas-fir forests of western Oregon : can thinning accelerate development of late-successional structure and composition? Author: Beggs, Liane R. Across western Oregon, Washington, and British Columbia, forest management practices over the past century reduced the amount of late-successional forest while simultaneously increasing the amount of young (less than 80 years old), managed Douglas-fir (Pseudotsuga menziesii) dominated forests. Recently, concerns over loss of late-successional habitat pushed management objectives on public lands away from timber production and toward maintenance and restoration of late-successional habitat. In accordance with these new objectives, The Young Stand Thinning and Diversity Study (YSTDS) was developed to test if thinning could accelerate development of latesuccessional habitat in young managed Douglas-fir forests. Though the YSTDS examines several components of forest ecosystems, the goal of this study was to investigate short-term (5-7 years post-treatment) responses of vegetation to thinning treatments and to evaluate this response in relation to long-term objectives of late-successional development. The study is located on the western slope of the central Oregon Cascades. It consists of four replications of four thinning treatments (treatment areas average 30 ha each) in 30-50 year old second-growth Douglas-fir forest stands. Treatments include a control, heavy thin, light thin, and light thin with gaps. Unlike traditional thinning, the thinning treatments in this study sought to maintain and enhance overstory structural diversity by: (1) retaining species other than Douglas-fir, (2) simulating low densities that characterized development of some old-growth stands, and (3) adding canopy gaps to enhance spatial diversity. Following treatment completion, first, third, and fifth-year vegetation responses were measured Results for overstory vegetation indicate that heavy thinning may accelerate development of large trees, one important component of old-growth structure. This was evident by faster growth of the largest trees in the heavy thin than in the control. A heavy thin may also permit more time for understory development than a lighter thin because canopies of heavy thinned stands remained open longer than canopies of light thinned stands. Variation in overstory cover, which may promote heterogeneous understory development, was higher in the treatment that included canopy gaps than in other treatments including the control. Although accelerated development of a multi-layered canopy was not evident in any treatment, retention of non-dominant tree species prevented simplification of vertical canopy structure by retaining layers that are typically removed by a low thinning prescription. In addition, mortality of non-dominant species was not greater in thinned treatments than in the control. In the understory, results suggest that thinning can increase abundance of some vegetative layers without encouraging homogenization of the understory by clonal shrubs or exotic species. The thinnings resulted in initial declines of bryophytes, tall shrubs, and low shrubs followed by subsequent recovery and growth. While herbs displayed little initial response, a release of early-seral species was evident by 5-7 years post-treatment. Initial changes following thinning were likely due to harvesting damage and/or alteration of microclimate while subsequent changes were probably also related to increased resource availability. It is expected that eventually similarities and differences in overstory structure among thinned treatments will be reflected in the understory. For example, variation in canopy cover created by the addition of canopy gaps was already reflected in the understory, as plant assemblages differed across the gradient from gaps to the thinned forest matrix. Hence, although understory vegetation was similar among heavy and light thins in the short-term, early closure of the canopy following a light thin could preclude continuation of late-seral understory development. Finally, the effect of canopy gaps on the understory was more apparent at a within-stand scale than at a stand scale. Had the within-stand scale been ignored, relevant information regarding understory response would have been overlooked. This indicates that spatial scale should be considered when assessing ecological patterns. In conclusion, it is acknowledged that there are drawbacks to thinning (e.g., certain species decline following thinning) It is also acknowledged that the short-term nature of the data permits only speculation regarding long-term succession. While these limitations are recognized, current trends indicate that a moderate to heavy thinning in combination with gap formation can hasten development of late-successional features in thinned stands relative to unthinned stands. Thus, thinning similar to that used in this study can be one useful tool in the management of young Douglas-fir forests. Title: Vegetation response following thinning in young Douglas-fir forests of western Oregon : can thinning accelerate development of late-successional structure and composition? Author: Beggs, Liane R. Across western Oregon, Washington, and British Columbia, forest management practices over the past century reduced the amount of late-successional forest while simultaneously increasing the amount of young (less than 80 years old), managed Douglas-fir (Pseudotsuga menziesii) dominated forests. Recently, concerns over loss of late-successional habitat pushed management objectives on public lands away from timber production and toward maintenance and restoration of late-successional habitat. In accordance with these new objectives, The Young Stand Thinning and Diversity Study (YSTDS) was developed to test if thinning could accelerate development of latesuccessional habitat in young managed Douglas-fir forests. Though the YSTDS examines several components of forest ecosystems, the goal of this study was to investigate short-term (5-7 years post-treatment) responses of vegetation to thinning treatments and to evaluate this response in relation to long-term objectives of late-successional development. The study is located on the western slope of the central Oregon Cascades. It consists of four replications of four thinning treatments (treatment areas average 30 ha each) in 30-50 year old second-growth Douglas-fir forest stands. Treatments include a control, heavy thin, light thin, and light thin with gaps. Unlike traditional thinning, the thinning treatments in this study sought to maintain and enhance overstory structural diversity by: (1) retaining species other than Douglas-fir, (2) simulating low densities that characterized development of some old-growth stands, and (3) adding canopy gaps to enhance spatial diversity. Following treatment completion, first, third, and fifth-year vegetation responses were measured Results for overstory vegetation indicate that heavy thinning may accelerate development of large trees, one important component of old-growth structure. This was evident by faster growth of the largest trees in the heavy thin than in the control. A heavy thin may also permit more time for understory development than a lighter thin because canopies of heavy thinned stands remained open longer than canopies of light thinned stands. Variation in overstory cover, which may promote heterogeneous understory development, was higher in the treatment that included canopy gaps than in other treatments including the control. Although accelerated development of a multi-layered canopy was not evident in any treatment, retention of non-dominant tree species prevented simplification of vertical canopy structure by retaining layers that are typically removed by a low thinning prescription. In addition, mortality of non-dominant species was not greater in thinned treatments than in the control. In the understory, results suggest that thinning can increase abundance of some vegetative layers without encouraging homogenization of the understory by clonal shrubs or exotic species. The thinnings resulted in initial declines of bryophytes, tall shrubs, and low shrubs followed by subsequent recovery and growth. While herbs displayed little initial response, a release of early-seral species was evident by 5-7 years post-treatment. Initial changes following thinning were likely due to harvesting damage and/or alteration of microclimate while subsequent changes were probably also related to increased resource availability. It is expected that eventually similarities and differences in overstory structure among thinned treatments will be reflected in the understory. For example, variation in canopy cover created by the addition of canopy gaps was already reflected in the understory, as plant assemblages differed across the gradient from gaps to the thinned forest matrix. Hence, although understory vegetation was similar among heavy and light thins in the short-term, early closure of the canopy following a light thin could preclude continuation of late-seral understory development. Finally, the effect of canopy gaps on the understory was more apparent at a within-stand scale than at a stand scale. Had the within-stand scale been ignored, relevant information regarding understory response would have been overlooked. This indicates that spatial scale should be considered when assessing ecological patterns. In conclusion, it is acknowledged that there are drawbacks to thinning (e.g., certain species decline following thinning) It is also acknowledged that the short-term nature of the data permits only speculation regarding long-term succession. While these limitations are recognized, current trends indicate that a moderate to heavy thinning in combination with gap formation can hasten development of late-successional features in thinned stands relative to unthinned stands. Thus, thinning similar to that used in this study can be one useful tool in the management of young Douglas-fir forests. Close

• 50. [Article] The influence of prescribed fire on the rare endemic plant Delphinium pavonaceum (Peacock larkspur)

  In the wetland prairie of William L. Finley National Wildlife Refuge (FNWR) in western Oregon, we investigated the response of Delphinium pavonaceum Ewan (peacock larkspur, Ranunculaceae), an endangered ...

  Citation × Citation Citation Abstract Copy Title: The influence of prescribed fire on the rare endemic plant Delphinium pavonaceum (Peacock larkspur) Author: McKernan, Brie-Anne In the wetland prairie of William L. Finley National Wildlife Refuge (FNWR) in western Oregon, we investigated the response of Delphinium pavonaceum Ewan (peacock larkspur, Ranunculaceae), an endangered perennial forb, to four unreplicated dormant season fire regimes of 0, 2, 4, or 10 fires that were applied over a 12-year period. Additionally, an unexpected removal of woody plants by refuge staff within some portions of our control area offered an unplanned opportunity for study. In 2002 we measured the density and vigor of reproductive plants, and performed seed germination trials. In 2003 we repeated previous field measurements, sampled immature plant density, and recorded observations of the insects visiting D. pavonaceum in burned and unburned habitats. We hypothesized that this rare endemic species and its insect visitors would respond positively to prescribed burning or the removal of woody species. Low seedling density was found in the unburned and hand-removal areas, likely due to interference from litter and/or taller, shading plants. We also found low seedling density in sites burned the previous year, implying that fire consumes or damages unprotected seeds in the litter layer or exposed on the soil surface. Seedling density was greater in a site burned three seasons previously, suggesting that fire ultimately leads to the enhancement of seedling density following the replenishment of the seed bank. The largest density of recruits was detected in a subunit recently returned to fire management in 1999, and also burned in 2002 following our first field season. However, the other, more-frequently burned sites did not exhibit an increased density of recruits, possibly due to a reduction of the seed bank following repeated bums, and increased intraspecific competition with mature plants. The elevated density of seedlings and recruits we observed in some burned areas may lead to population growth, as we observed a greater density of reproductive plants in the two most-frequently burned subunits during both years of study. Our results also suggest that fewer plants enter summer dormancy in burned areas, and that increases in flowering plant density may decline after 3 years. Plants in the burned and hand-removal sites were shorter, likely resulting from water stress following the removal of shading plants and litter. Additionally, plants in unburned areas might have experienced greater stem elongation due to competition with tall and dense vegetation. Plants in the burned and hand-removal areas were generally similar to the unburned control site for flower and fruit production, fruit set, seed production and seed mass. However, plants in the burned and hand-removal areas produced more flowers per centimeter of height, indicating that they allocated more energy to reproduction than plants in the unburned area. We suggest that the decreased productivity we observed in some vigor traits is not problematic to D. pavonaceum conservation goals and may be ameliorated after 3 years. Bombus ca1ifornicus, B. appositus, and several large moths were the only insects we observed visiting D. pavonaceum during the two years of this study. We did not detect a difference in bumblebee abundance between a frequently burned and unburned study plot during the peak flowering time of D. pavonaceum. However, our small sample size requires that this result be cautiously interpreted and further studied, as it is possible that our visitation data would change appreciably with a broader range of observations. Our results indicate that the current FNWR fire management plan is not in conflict with D. pavonaceum conservation. The choice of fire-return interval seems to influence D. pavonaceum populations and plant vigor, but because the fire-schedule at FNWR was altered in 1997, our ability to recommend an appropriate fire-regime for this species is limited. Although not directly investigated, we suggest that annual fires, when applied for more than five consecutive years, might lead to population declines for this species because fire appears to consume the seed bank and reduce seedling density. If annual fires are returned to FNWR, the potential for this undesirable result should be investigated for at least 10 years by population monitoring. Title: The influence of prescribed fire on the rare endemic plant Delphinium pavonaceum (Peacock larkspur) Author: McKernan, Brie-Anne In the wetland prairie of William L. Finley National Wildlife Refuge (FNWR) in western Oregon, we investigated the response of Delphinium pavonaceum Ewan (peacock larkspur, Ranunculaceae), an endangered perennial forb, to four unreplicated dormant season fire regimes of 0, 2, 4, or 10 fires that were applied over a 12-year period. Additionally, an unexpected removal of woody plants by refuge staff within some portions of our control area offered an unplanned opportunity for study. In 2002 we measured the density and vigor of reproductive plants, and performed seed germination trials. In 2003 we repeated previous field measurements, sampled immature plant density, and recorded observations of the insects visiting D. pavonaceum in burned and unburned habitats. We hypothesized that this rare endemic species and its insect visitors would respond positively to prescribed burning or the removal of woody species. Low seedling density was found in the unburned and hand-removal areas, likely due to interference from litter and/or taller, shading plants. We also found low seedling density in sites burned the previous year, implying that fire consumes or damages unprotected seeds in the litter layer or exposed on the soil surface. Seedling density was greater in a site burned three seasons previously, suggesting that fire ultimately leads to the enhancement of seedling density following the replenishment of the seed bank. The largest density of recruits was detected in a subunit recently returned to fire management in 1999, and also burned in 2002 following our first field season. However, the other, more-frequently burned sites did not exhibit an increased density of recruits, possibly due to a reduction of the seed bank following repeated bums, and increased intraspecific competition with mature plants. The elevated density of seedlings and recruits we observed in some burned areas may lead to population growth, as we observed a greater density of reproductive plants in the two most-frequently burned subunits during both years of study. Our results also suggest that fewer plants enter summer dormancy in burned areas, and that increases in flowering plant density may decline after 3 years. Plants in the burned and hand-removal sites were shorter, likely resulting from water stress following the removal of shading plants and litter. Additionally, plants in unburned areas might have experienced greater stem elongation due to competition with tall and dense vegetation. Plants in the burned and hand-removal areas were generally similar to the unburned control site for flower and fruit production, fruit set, seed production and seed mass. However, plants in the burned and hand-removal areas produced more flowers per centimeter of height, indicating that they allocated more energy to reproduction than plants in the unburned area. We suggest that the decreased productivity we observed in some vigor traits is not problematic to D. pavonaceum conservation goals and may be ameliorated after 3 years. Bombus ca1ifornicus, B. appositus, and several large moths were the only insects we observed visiting D. pavonaceum during the two years of this study. We did not detect a difference in bumblebee abundance between a frequently burned and unburned study plot during the peak flowering time of D. pavonaceum. However, our small sample size requires that this result be cautiously interpreted and further studied, as it is possible that our visitation data would change appreciably with a broader range of observations. Our results indicate that the current FNWR fire management plan is not in conflict with D. pavonaceum conservation. The choice of fire-return interval seems to influence D. pavonaceum populations and plant vigor, but because the fire-schedule at FNWR was altered in 1997, our ability to recommend an appropriate fire-regime for this species is limited. Although not directly investigated, we suggest that annual fires, when applied for more than five consecutive years, might lead to population declines for this species because fire appears to consume the seed bank and reduce seedling density. If annual fires are returned to FNWR, the potential for this undesirable result should be investigated for at least 10 years by population monitoring. Close