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• 21. [Article] Oregon Wildlife; Vol.39 No.8 (November-December 1984)

  Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p...

  Citation × Citation Citation Abstract Copy Title: Oregon Wildlife; Vol.39 No.8 (November-December 1984) Author: Oregon. Department of Fish and Wildlife Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p.13 Title: Oregon Wildlife; Vol.39 No.8 (November-December 1984) Author: Oregon. Department of Fish and Wildlife Contents: What do Elk Hunters Want? - p.3-6; Salmon Begin Fall Run - p.7; Playing Radio Tag in the Wilds [Radio tags on wildlife] - p.8-9; Watchable Wildlife in Central Oregon - p.10-11; Deer Mouse - p.13 Close

• 22. [Article] Oregon coastal salmon and steelhead tagging programs

  Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum ...

  Citation × Citation Citation Abstract Copy Title: Oregon coastal salmon and steelhead tagging programs Author: Henry, Kenneth A., Morgan, Alfred R. Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum length of time the fish remained in the fishery, population sizes, and fishing mortalities were determined from this study. Part II. To aid in the management of the Siletz River commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1954. General migration behavior, the minimum length of time fish remained in the fishery, population estimates, and fishing mortalities were determined. Title: Oregon coastal salmon and steelhead tagging programs Author: Henry, Kenneth A., Morgan, Alfred R. Part I. To aid in the management of the Tillamook Bay commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1953. General migration behavior, the minimum length of time the fish remained in the fishery, population sizes, and fishing mortalities were determined from this study. Part II. To aid in the management of the Siletz River commercial salmon fishery, a tagging program was conducted on the salmon and steelhead trout runs in 1954. General migration behavior, the minimum length of time fish remained in the fishery, population estimates, and fishing mortalities were determined. Close

• 23. [Article] Geospatial depiction of fall run Chinook Salmon in Wallowa County

  This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary ...

  Citation × Citation Citation Abstract Copy Title: Geospatial depiction of fall run Chinook Salmon in Wallowa County Author: Thomas, Samuel, Department of Fish and Wildlife, State of Oregon, Oregon State University This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Title: Geospatial depiction of fall run Chinook Salmon in Wallowa County Author: Thomas, Samuel, Department of Fish and Wildlife, State of Oregon, Oregon State University This product is for informational purposes and may not have been prepared for, or be suitable for legal, engineering, or surveying purposes. Users of this information should review or consult the primary data and information sources to verify the purpose and limitations. The data is provided as-is, without warranty. Close

• 24. [Article] Factors affecting the abundance of fall chinook salmon in the Columbia River

  A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in ...

  Citation × Citation Citation Abstract Copy Title: Factors affecting the abundance of fall chinook salmon in the Columbia River Author: Van Hyning, Jack M. A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in the early 1950's. Fluctuations in abundance of major salmon runs the North Pacific were examined to detect any coastwide pattern. Only chinook salmon in Cook Inlet, Alaska, and chum salmon from Oregon to southwestern Alaska showed a similar trend. The following life history stages broken down into pre- and post-decline years were examined: (1) marine life including distribution and migration, growth and maturity, survival rate, oceanography, and commercial and sport fisheries; (2) upstream migration including river fisheries, gear selectivity, size and age composition of the run, escapement, and influence of dams, diseases, and water quality; (3) reproduction and incubation including spawning areas and spawning and incubation conditions; and (4) downstream migration which included predation, dams and reservoirs, diseases, flow, turbidity and temperature, and estuary life. Salient points of the analysis were: (1) a change in the maturity and survival pattern based on tagged and fin-clipped fish recovered before and after 1950; (2) a significant negative correlation between sea-water temperature during a year class' first year at sea and subsequent survival; (3) a large increase in the ocean fisheries coincident with the decline in the run; (4) catch-effort statistics of the ocean fishery show a near classic example of the effect of overexploitation; (5) estimates of the contribution of Columbia River chinook to the ocean fisheries based on tag recoveries could be underestimates rather than overestimates; (6) a significant inverse correlation between estimated ocean catch of Columbia River fall chinook and numbers entering the river; (7) size and age composition of the ocean and river catches decreased coincident with the decline in the run; (8) the gill-net fishery shows little size selectivity by age, size, or sex in the dominant group; (9) fluctuations in abundance of hatchery stocks are related to differences in survival between fingerling and adult; (10) hatchery, lower river, and upriver populations fluctuate in abundance in much the same pattern; (11) optimum escapement is between 90,000 and 100,000 adults, a value that was exceeded during most years; (12) a highly significant negative correlation between numbers of spawners and return per spawner; (13) most of the early dams had no direct effect on fall chinook and the decline in productivity occurred when river conditions were relatively stable; (14) temperatures at time of migration and spawning for fall chinook have not increased enough to be a serious mortality factor; (15) little relationship between flow, turbidity, and temperature at time of downstream migration and subsequent return was evident except that high temperatures and high flows (and turbidities) tended to produce poorer runs during certain time periods; and (16) predation and delay of smolts in reservoirs are largely unknown factors, but circumstantial evidence suggests that they were not important in regulating fall chinook numbers during the period of the study. Finally, variables that appeared to bear some relationship to fluctuations in abundance of fall chinook were submitted to multiple regression analysis. For the predecline period (1938-46 brood years), sea-water temperature and ocean troll fishing effort were significant variables (R² = 0.74). For post decline years (1947-59 broods), troll had the most influence on total return with ocean temperature and escapement having lesser effects. For the combined years, troll intensity and ocean temperature were the significant variables (R² = 0.572). Entering interaction of river flow at downstream migration with the other variables brought R² to 0.754 which means that 75% of the variability in the returning run could be accounted for by these three factors. Return per spawner was so heavily influenced by numbers of spawners that the other factors assumed negligible importance. Equations were derived that predicted the returning run in close agreement with the actual run size. Substituting a low and constant troll fishing effort in the equation resulted in the predicted run maintaining the average predecline level. The increase in ocean fishing was the main contributor to the decline of the Columbia River fall chinook run as shown by correlation, by analogy, and by the process of elimination. To demonstrate why other chinook runs have not shown similar declines, it was shown that due to several unique features in Columbia River fall chinook life history they are exposed to much more ocean fishing than other populations. It was emphasized that these conclusions should not be extrapolated to the future or to other species or runs of salmon. Title: Factors affecting the abundance of fall chinook salmon in the Columbia River Author: Van Hyning, Jack M. A study of the population ecology of Columbia River fall chinook salmon, Oncorhynchus tshawytscha (Walbaum), was made in an attempt to determine the cause of a serious decline in this run which occurred in the early 1950's. Fluctuations in abundance of major salmon runs the North Pacific were examined to detect any coastwide pattern. Only chinook salmon in Cook Inlet, Alaska, and chum salmon from Oregon to southwestern Alaska showed a similar trend. The following life history stages broken down into pre- and post-decline years were examined: (1) marine life including distribution and migration, growth and maturity, survival rate, oceanography, and commercial and sport fisheries; (2) upstream migration including river fisheries, gear selectivity, size and age composition of the run, escapement, and influence of dams, diseases, and water quality; (3) reproduction and incubation including spawning areas and spawning and incubation conditions; and (4) downstream migration which included predation, dams and reservoirs, diseases, flow, turbidity and temperature, and estuary life. Salient points of the analysis were: (1) a change in the maturity and survival pattern based on tagged and fin-clipped fish recovered before and after 1950; (2) a significant negative correlation between sea-water temperature during a year class' first year at sea and subsequent survival; (3) a large increase in the ocean fisheries coincident with the decline in the run; (4) catch-effort statistics of the ocean fishery show a near classic example of the effect of overexploitation; (5) estimates of the contribution of Columbia River chinook to the ocean fisheries based on tag recoveries could be underestimates rather than overestimates; (6) a significant inverse correlation between estimated ocean catch of Columbia River fall chinook and numbers entering the river; (7) size and age composition of the ocean and river catches decreased coincident with the decline in the run; (8) the gill-net fishery shows little size selectivity by age, size, or sex in the dominant group; (9) fluctuations in abundance of hatchery stocks are related to differences in survival between fingerling and adult; (10) hatchery, lower river, and upriver populations fluctuate in abundance in much the same pattern; (11) optimum escapement is between 90,000 and 100,000 adults, a value that was exceeded during most years; (12) a highly significant negative correlation between numbers of spawners and return per spawner; (13) most of the early dams had no direct effect on fall chinook and the decline in productivity occurred when river conditions were relatively stable; (14) temperatures at time of migration and spawning for fall chinook have not increased enough to be a serious mortality factor; (15) little relationship between flow, turbidity, and temperature at time of downstream migration and subsequent return was evident except that high temperatures and high flows (and turbidities) tended to produce poorer runs during certain time periods; and (16) predation and delay of smolts in reservoirs are largely unknown factors, but circumstantial evidence suggests that they were not important in regulating fall chinook numbers during the period of the study. Finally, variables that appeared to bear some relationship to fluctuations in abundance of fall chinook were submitted to multiple regression analysis. For the predecline period (1938-46 brood years), sea-water temperature and ocean troll fishing effort were significant variables (R² = 0.74). For post decline years (1947-59 broods), troll had the most influence on total return with ocean temperature and escapement having lesser effects. For the combined years, troll intensity and ocean temperature were the significant variables (R² = 0.572). Entering interaction of river flow at downstream migration with the other variables brought R² to 0.754 which means that 75% of the variability in the returning run could be accounted for by these three factors. Return per spawner was so heavily influenced by numbers of spawners that the other factors assumed negligible importance. Equations were derived that predicted the returning run in close agreement with the actual run size. Substituting a low and constant troll fishing effort in the equation resulted in the predicted run maintaining the average predecline level. The increase in ocean fishing was the main contributor to the decline of the Columbia River fall chinook run as shown by correlation, by analogy, and by the process of elimination. To demonstrate why other chinook runs have not shown similar declines, it was shown that due to several unique features in Columbia River fall chinook life history they are exposed to much more ocean fishing than other populations. It was emphasized that these conclusions should not be extrapolated to the future or to other species or runs of salmon. Close

• 25. [Article] Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & ...

  Citation × Citation Citation Abstract Copy Title: Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California Author: Evans, Allen F., Adrean, Lindsay J., Roby, Daniel D., Lyons, Donald E., Collis, Ken To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & Francis and can be found at: http://www.taylorandfrancis.com. Copyrighted by American Fisheries Society (http://afsjournals.org/). Title: Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California Author: Evans, Allen F., Adrean, Lindsay J., Roby, Daniel D., Lyons, Donald E., Collis, Ken To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is published by Taylor & Francis and can be found at: http://www.taylorandfrancis.com. Copyrighted by American Fisheries Society (http://afsjournals.org/). Close

• 26. [Article] Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California

  Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation ...

  Citation × Citation Citation Abstract Copy Title: Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California Author: Adrean, Lindsay J. Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation sites for some Caspian terns from the world's largest colony in the Columbia River estuary of Oregon. Juvenile salmonids have been identified in the diet of Caspian terns nesting at Brooks Island, so I investigated whether the colony, at its current or an enhanced size, poses a threat to the recovery of several runs of salmonids (Oncorhynchus spp.) in San Francisco Bay that are listed under the U.S. Endangered Species Act (ESA). I also examined the foraging ecology of Brooks Island Caspian terns to 1) determine whether the colony is suitable for expansion based on availability of forage fish resources, a factor potentially limiting the size and productivity of the colony, and 2) investigate how Caspian terns nesting at this colony exploit forage fish resources. I used a bioenergetics modeling approach, employing estimates of tern energy requirements and proportions of energy supplied by various prey types, to estimate consumption of juvenile salmonids by Caspian terns nesting on Brooks Island during 2008 and 2009. Estimated salmonid consumption was 205,000 smolts (95% CI: 175,000 – 245,000 smolts) in 2008 and 167,000 smolts (95% CI: 144,000 – 191,000 smolts) in 2009. Predation rates on ESA-listed Central Valley spring-run Chinook salmon (O. tshawytscha; 0.08%) were lower than those on unlisted fall-run Chinook salmon (1.0%). Average per capita predation rates on juvenile salmonids by Brooks Island Caspian terns (2008: 126 fish; 2009: 123 fish) were less than half those of Caspian terns nesting in the Columbia River estuary. If the current downward trend in the number of Caspian terns nesting on Brooks Island continues until the colony is no longer extant, the resulting declines in predation on salmonids would lead to increases in annual population growth rates (Δλ) of salmonid runs of just small fractions of one percentage point. The proposed enhancement of the Brooks Island Caspian tern colony to 3,000 individuals would at most cause declines in annual population growth rates of 0.3% for fall-run Chinook salmon and 0.02% for threatened spring-run Chinook salmon, assuming that smolt mortality from tern predation is 100% additive. This level of impact to the ESA-listed spring-run Chinook salmon stock is less than the level considered acceptable by the National Marine Fisheries Service (Δλ = 0.05%). Radio-tracking of Caspian terns nesting on Brooks Island revealed that the maximum foraging distance from the colony was 80 km. The median foraging distance from the colony was greater in 2009 compared to 2008 (20.6 km vs. 14.0 km), average number of foraging trips per day was higher (4.4 vs. 3.4 foraging trips), and average adult colony attendance was lower (43% vs. 52% of daylight hours). These results indicate that the colony was more food-limited during the 2009 breeding season, concurrent with anomalous downwelling along the coast of northern California and reduced availability and size of marine forage fishes, such as herring, sardines, and anchovies. Caspian terns used a number of core foraging areas within 30 km of the Brooks Island colony, both inside and just outside the Bay. Two large core foraging areas were close to or overlapped with the release site for juvenile salmonids in eastern San Pablo Bay, where > 10 million hatchery-raised smolts were released from net pens during both the 2008 and 2009 tern nesting seasons. This finding supports the hypothesis that most juvenile salmonids consumed by terns nesting at the Brooks Island colony were captured at or near the release site. Individual Caspian terns displayed foraging site fidelity, suggesting that foraging at the release site for hatchery-raised salmonids was a learned behavior by some terns. The Brooks Island colony site is within foraging distance of adequate marine forage fish resources in most years, and Caspian terns nesting there are not dependent on juvenile salmonids as a food resource. Consumption of juvenile salmonids by Brooks Island terns would be largely curtailed by modification of hatchery release practices. Title: Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California Author: Adrean, Lindsay J. Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation sites for some Caspian terns from the world's largest colony in the Columbia River estuary of Oregon. Juvenile salmonids have been identified in the diet of Caspian terns nesting at Brooks Island, so I investigated whether the colony, at its current or an enhanced size, poses a threat to the recovery of several runs of salmonids (Oncorhynchus spp.) in San Francisco Bay that are listed under the U.S. Endangered Species Act (ESA). I also examined the foraging ecology of Brooks Island Caspian terns to 1) determine whether the colony is suitable for expansion based on availability of forage fish resources, a factor potentially limiting the size and productivity of the colony, and 2) investigate how Caspian terns nesting at this colony exploit forage fish resources. I used a bioenergetics modeling approach, employing estimates of tern energy requirements and proportions of energy supplied by various prey types, to estimate consumption of juvenile salmonids by Caspian terns nesting on Brooks Island during 2008 and 2009. Estimated salmonid consumption was 205,000 smolts (95% CI: 175,000 – 245,000 smolts) in 2008 and 167,000 smolts (95% CI: 144,000 – 191,000 smolts) in 2009. Predation rates on ESA-listed Central Valley spring-run Chinook salmon (O. tshawytscha; 0.08%) were lower than those on unlisted fall-run Chinook salmon (1.0%). Average per capita predation rates on juvenile salmonids by Brooks Island Caspian terns (2008: 126 fish; 2009: 123 fish) were less than half those of Caspian terns nesting in the Columbia River estuary. If the current downward trend in the number of Caspian terns nesting on Brooks Island continues until the colony is no longer extant, the resulting declines in predation on salmonids would lead to increases in annual population growth rates (Δλ) of salmonid runs of just small fractions of one percentage point. The proposed enhancement of the Brooks Island Caspian tern colony to 3,000 individuals would at most cause declines in annual population growth rates of 0.3% for fall-run Chinook salmon and 0.02% for threatened spring-run Chinook salmon, assuming that smolt mortality from tern predation is 100% additive. This level of impact to the ESA-listed spring-run Chinook salmon stock is less than the level considered acceptable by the National Marine Fisheries Service (Δλ = 0.05%). Radio-tracking of Caspian terns nesting on Brooks Island revealed that the maximum foraging distance from the colony was 80 km. The median foraging distance from the colony was greater in 2009 compared to 2008 (20.6 km vs. 14.0 km), average number of foraging trips per day was higher (4.4 vs. 3.4 foraging trips), and average adult colony attendance was lower (43% vs. 52% of daylight hours). These results indicate that the colony was more food-limited during the 2009 breeding season, concurrent with anomalous downwelling along the coast of northern California and reduced availability and size of marine forage fishes, such as herring, sardines, and anchovies. Caspian terns used a number of core foraging areas within 30 km of the Brooks Island colony, both inside and just outside the Bay. Two large core foraging areas were close to or overlapped with the release site for juvenile salmonids in eastern San Pablo Bay, where > 10 million hatchery-raised smolts were released from net pens during both the 2008 and 2009 tern nesting seasons. This finding supports the hypothesis that most juvenile salmonids consumed by terns nesting at the Brooks Island colony were captured at or near the release site. Individual Caspian terns displayed foraging site fidelity, suggesting that foraging at the release site for hatchery-raised salmonids was a learned behavior by some terns. The Brooks Island colony site is within foraging distance of adequate marine forage fish resources in most years, and Caspian terns nesting there are not dependent on juvenile salmonids as a food resource. Consumption of juvenile salmonids by Brooks Island terns would be largely curtailed by modification of hatchery release practices. Close

• 27. [Article] Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery

  The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information ...

  Citation × Citation Citation Abstract Copy Title: Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery Author: Lin, Pei-Chien The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information to evaluate the effects of alternative policies on the benefits provided to different constituencies. Over the past decade, economists have developed techniques to measure the benefits provided by such nonmarket goods. The random utility model (RUM), a variant of the travel cost model (TCM), is one of the techniques developed by economists to measure benefits associated with changes in the quantity or quality of nonmarket goods. The advantages of using RUN over other techniques are that the substitution effects among different sites providing similar recreational activities or services can be incorporated into the model to avoid overestimating the benefits provided by a certain site. Redacted for Privacy RUM is used in this thesis to measure the welfare changes caused by a reduction in fishing quality or closure of one of the sites in a recreational fishing area. The focus of this study is the spring chinook recreational fishery in the lower Willamette River. The 1988 Willamette Run Spring Chinook Survey and the 1988 Willamette River Spring Chinook Salmon Run Report, published by the Oregon Department of Fish and Wildlife, provide the data set to do this research. Three definitions of travel costs, TC1, TC2, and TC3 are derived from the data set and used alternatively in the RUM framework. Specific objectives of this thesis include: (1) estimate how the attributes of a site (travel cost, congestion level and fishing quality of the site) will affect the individual's site choice; and (2) estimate the welfare changes arising from the two hypothetical policies which change the quality of fishing experience and which restrict the access of anglers to a certain fishing site. The results indicate that fishing sites on the Willamette River are more attractive to anglers if the fishing quality is increased, if more people visit, and if the site is relatively inexpensive to reach. The results of the elasticities of probabilities show that the travel cost has the largest effect on individual site choice decision. For different definitions of travel costs, the estimated welfare losses caused by the first hypothetical policy (of a reduction in fishing. success) for a representative angler in the sample are $ 0.37, $ 0.91, and $ 0.47 respectively, per trip. For different definitions of travel costs, the aggregate welfare losses associated with this hypothetical policy are $ 82,309, $ 202,436, and $ 104,555. For different definitions of travel costs, the estimated welfare losses caused by the second hypothetical policy (a closure of one site) for a representative angler in the sample are $ 3.82, $ 54.91, and $ 4.83 per trip respectively. The aggregate welfare losses associated with this hypothetical policy are $ 849,786, $ 12,215,114, and $ 1,074,467 respectively for TC1, TC2, and TC3. Assuming that these two policies achieved the same objectives, the policy implication of these results is that the first policy is preferred because the welfare loss is much smaller than the second one. There is a methodological implication suggested by one of the findings. A few of the individual results obtained from the model with TC2 travel cost violate the assumption of utility maximization. This implies that TC2 may over-value the opportunity cost of time in the travel cost variable, and points out the uncertain of the definition of travel cost used in RUM analyses. Title: Measuring recreational fishing benefits in a multiple site framework : a case study of the Willamette spring chinook sports fishery Author: Lin, Pei-Chien The management options chosen by decision makers in managing wildlife and fisheries have different effects for diverse user groups. As a result, natural resource management agencies often seek information to evaluate the effects of alternative policies on the benefits provided to different constituencies. Over the past decade, economists have developed techniques to measure the benefits provided by such nonmarket goods. The random utility model (RUM), a variant of the travel cost model (TCM), is one of the techniques developed by economists to measure benefits associated with changes in the quantity or quality of nonmarket goods. The advantages of using RUN over other techniques are that the substitution effects among different sites providing similar recreational activities or services can be incorporated into the model to avoid overestimating the benefits provided by a certain site. Redacted for Privacy RUM is used in this thesis to measure the welfare changes caused by a reduction in fishing quality or closure of one of the sites in a recreational fishing area. The focus of this study is the spring chinook recreational fishery in the lower Willamette River. The 1988 Willamette Run Spring Chinook Survey and the 1988 Willamette River Spring Chinook Salmon Run Report, published by the Oregon Department of Fish and Wildlife, provide the data set to do this research. Three definitions of travel costs, TC1, TC2, and TC3 are derived from the data set and used alternatively in the RUM framework. Specific objectives of this thesis include: (1) estimate how the attributes of a site (travel cost, congestion level and fishing quality of the site) will affect the individual's site choice; and (2) estimate the welfare changes arising from the two hypothetical policies which change the quality of fishing experience and which restrict the access of anglers to a certain fishing site. The results indicate that fishing sites on the Willamette River are more attractive to anglers if the fishing quality is increased, if more people visit, and if the site is relatively inexpensive to reach. The results of the elasticities of probabilities show that the travel cost has the largest effect on individual site choice decision. For different definitions of travel costs, the estimated welfare losses caused by the first hypothetical policy (of a reduction in fishing. success) for a representative angler in the sample are $ 0.37, $ 0.91, and $ 0.47 respectively, per trip. For different definitions of travel costs, the aggregate welfare losses associated with this hypothetical policy are $ 82,309, $ 202,436, and $ 104,555. For different definitions of travel costs, the estimated welfare losses caused by the second hypothetical policy (a closure of one site) for a representative angler in the sample are $ 3.82, $ 54.91, and $ 4.83 per trip respectively. The aggregate welfare losses associated with this hypothetical policy are $ 849,786, $ 12,215,114, and $ 1,074,467 respectively for TC1, TC2, and TC3. Assuming that these two policies achieved the same objectives, the policy implication of these results is that the first policy is preferred because the welfare loss is much smaller than the second one. There is a methodological implication suggested by one of the findings. A few of the individual results obtained from the model with TC2 travel cost violate the assumption of utility maximization. This implies that TC2 may over-value the opportunity cost of time in the travel cost variable, and points out the uncertain of the definition of travel cost used in RUM analyses. Close

• 28. [Article] Non-regulatory efforts to combat nonpoint source pollution in Oregon

  This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development ...

  Citation × Citation Citation Abstract Copy Title: Non-regulatory efforts to combat nonpoint source pollution in Oregon Author: Lindberg, Roberta J. This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development of Oregon's new federally mandated Coastal Nonpoint Pollution Control Program (CNPCP). When Congress reauthorized the Coastal Zone Management Act in 1990, it added significant new responsibilities for coastal states regarding water pollution from diffuse, widespread sources that in the past have not been regulated. Section 6217 of the Coastal Zone Act Reauthorization Amendments (CZARA) requires states to adopt enforceable programs to address nonpoint source pollution arising from agriculture, forestry, urban runoff, recreational boating and marinas, channelization, dams and eroding stream banks. "Nonpoint source pollution" in this context includes any discharge to the state's waters which is not regulated by the Clean Water Act's permit system, the National Pollutant Discharge Elimination System (NPDES). When Congress mandated the coastal nonpoint source program, it directed that states' coastal programs and water quality agencies work together in developing and implementing the program. In Oregon, the Department of Land Conservation and Development (DLCD) and the Department of Environmental Quality (DEQ) are jointly responsible for the development of the coastal nonpoint control program. DLCD's Coastal Management Program implements provisions of the federal Coastal Zone Management Act. DEQ's Water Quality Division manages the statewide nonpoint source control program pursuant to Section 319 of the Clean Water Act (CWA). Staff at DLCD's Coastal Management Program prepared an extensive report and analysis of Oregon's current array of enforceable programs and the extent to which those programs satisfy the federal requirements for the new coastal program. Gaps in program coverage were identified, and efforts to fill those gaps are currently in progress. This report is a companion to the DLCD gap analysis. However, instead of focusing on enforceable programs, this report highlights nonpoint source control and watershed management programs that rely on voluntary efforts to achieve their goals. Staff at DEQ have identified nine types of activities which, together with enforcement, make constitute an effective watershed management program. This report presents an inventory of the state and federal government efforts currently underway within the state of Oregon which contribute to the control of nonpoint source pollution but do not rely on a regulatory program to do so. This is a time of extensive reevaluation and reordering of natural resource priorities and strategies at both the state and federal levels. The Clinton Forest Summit and the Forest Ecosystem Management Assessment Team (FEMAT) process have been examining federal forest policy from top to bottom. The two major federal land management agencies, the Forest Service and the Bureau of Land Management, began reviewing their policies and practices well before the Forest Summit, and have made significant changes as a result. At the state level, the Watershed Health Initiative directed $10 million to two regions of the state during the 1993-95 biennium, in an unprecedented effort to restore salmon habitat and improve water quality. The impetus for change comes from the visible results of past natural resource management practices: the collapse of many native salmon runs and the decline in many other species leading to a great expansion of activity under the federal Endangered Species Act. The federal court logging injunction to protect the Northern Spotted Owl triggered much activity at the state and local levels in an effort to avoid further listings and the potential economic dislocations associated with them. Title: Non-regulatory efforts to combat nonpoint source pollution in Oregon Author: Lindberg, Roberta J. This report and accompanying program inventory have been prepared in support of the Oregon Department of Environmental Quality's statewide nonpoint source pollution control efforts and for use in the development of Oregon's new federally mandated Coastal Nonpoint Pollution Control Program (CNPCP). When Congress reauthorized the Coastal Zone Management Act in 1990, it added significant new responsibilities for coastal states regarding water pollution from diffuse, widespread sources that in the past have not been regulated. Section 6217 of the Coastal Zone Act Reauthorization Amendments (CZARA) requires states to adopt enforceable programs to address nonpoint source pollution arising from agriculture, forestry, urban runoff, recreational boating and marinas, channelization, dams and eroding stream banks. "Nonpoint source pollution" in this context includes any discharge to the state's waters which is not regulated by the Clean Water Act's permit system, the National Pollutant Discharge Elimination System (NPDES). When Congress mandated the coastal nonpoint source program, it directed that states' coastal programs and water quality agencies work together in developing and implementing the program. In Oregon, the Department of Land Conservation and Development (DLCD) and the Department of Environmental Quality (DEQ) are jointly responsible for the development of the coastal nonpoint control program. DLCD's Coastal Management Program implements provisions of the federal Coastal Zone Management Act. DEQ's Water Quality Division manages the statewide nonpoint source control program pursuant to Section 319 of the Clean Water Act (CWA). Staff at DLCD's Coastal Management Program prepared an extensive report and analysis of Oregon's current array of enforceable programs and the extent to which those programs satisfy the federal requirements for the new coastal program. Gaps in program coverage were identified, and efforts to fill those gaps are currently in progress. This report is a companion to the DLCD gap analysis. However, instead of focusing on enforceable programs, this report highlights nonpoint source control and watershed management programs that rely on voluntary efforts to achieve their goals. Staff at DEQ have identified nine types of activities which, together with enforcement, make constitute an effective watershed management program. This report presents an inventory of the state and federal government efforts currently underway within the state of Oregon which contribute to the control of nonpoint source pollution but do not rely on a regulatory program to do so. This is a time of extensive reevaluation and reordering of natural resource priorities and strategies at both the state and federal levels. The Clinton Forest Summit and the Forest Ecosystem Management Assessment Team (FEMAT) process have been examining federal forest policy from top to bottom. The two major federal land management agencies, the Forest Service and the Bureau of Land Management, began reviewing their policies and practices well before the Forest Summit, and have made significant changes as a result. At the state level, the Watershed Health Initiative directed $10 million to two regions of the state during the 1993-95 biennium, in an unprecedented effort to restore salmon habitat and improve water quality. The impetus for change comes from the visible results of past natural resource management practices: the collapse of many native salmon runs and the decline in many other species leading to a great expansion of activity under the federal Endangered Species Act. The federal court logging injunction to protect the Northern Spotted Owl triggered much activity at the state and local levels in an effort to avoid further listings and the potential economic dislocations associated with them. Close

• 29. [Article] Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon

  In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking ...

  Citation × Citation Citation Abstract Copy Title: Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon Author: Courter, Ian I. In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking from hatcheries over the past hundred years is often suggested to be a major cause. The listing of over two dozen runs of salmon under the Endangered Species Act has catalyzed a re-assessment of hatchery effects on naturally spawning salmon. Recent policies have placed a much greater emphasis on restoring runs of wild salmon rather than maintaining runs through stocking from hatchery production. Except at the most superficial level, there is no consensus about how to define "wild." Rather, there is a continuum of definitions for "wild" and each definition supports an implicit policy goal. The precise way in which "wild salmon" is defined potentially has profound policy implications. Ultimately, the choice of definition is a policy decision that incorporates science as one of several factors influencing the decision. A suite of options, often poorly articulated, for defining "wild" are available to policy makers who are selecting recovery goals. To test a subset of the available definitions of wild, I quantified the number of hatchery and naturally spawning salmon for 19 populations of Oregon coastal coho. "Wild" was defined by types 1 through 5 based on the number of hatchery fish released annually and the number of naturally spawning hatchery adults. As currently managed by the Oregon Department of Fish and Wildlife, the Oregon coast has a range of "types" of coho salmon. By clearly and explicitly defining "wild" as steps along a continuum, policy makers and managers can more effectively monitor and achieve specific salmon recovery goals. Title: Salmon recovery in the Pacific Northwest : defining what constitutes a wild salmon Author: Courter, Ian I. In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking from hatcheries over the past hundred years is often suggested to be a major cause. The listing of over two dozen runs of salmon under the Endangered Species Act has catalyzed a re-assessment of hatchery effects on naturally spawning salmon. Recent policies have placed a much greater emphasis on restoring runs of wild salmon rather than maintaining runs through stocking from hatchery production. Except at the most superficial level, there is no consensus about how to define "wild." Rather, there is a continuum of definitions for "wild" and each definition supports an implicit policy goal. The precise way in which "wild salmon" is defined potentially has profound policy implications. Ultimately, the choice of definition is a policy decision that incorporates science as one of several factors influencing the decision. A suite of options, often poorly articulated, for defining "wild" are available to policy makers who are selecting recovery goals. To test a subset of the available definitions of wild, I quantified the number of hatchery and naturally spawning salmon for 19 populations of Oregon coastal coho. "Wild" was defined by types 1 through 5 based on the number of hatchery fish released annually and the number of naturally spawning hatchery adults. As currently managed by the Oregon Department of Fish and Wildlife, the Oregon coast has a range of "types" of coho salmon. By clearly and explicitly defining "wild" as steps along a continuum, policy makers and managers can more effectively monitor and achieve specific salmon recovery goals. Close

• 30. [Article] Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression

  Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been ...

  Citation × Citation Citation Abstract Copy Title: Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression Author: Banks, Michael A., McArthur, Andrew G., Birkeland, Shanda R., Bernier, Jeremiah C., Cipriano, Michael J. Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been well described. Current methods, such as long serial analysis of gene expression (LongSAGE) and microarrays, allow gene expression to be analyzed for thousands of genes simultaneously. To investigate whether differential gene expression is observed between fall- and spring-run Chinook salmon from California's Central Valley, LongSAGE libraries were constructed. Three libraries containing between 25,512 and 29,372 sequenced tags (21 base pairs/tag) were generated using messenger RNA from the brains of adult Chinook salmon returning in fall and spring and from one ocean-caught Chinook salmon. Tags were annotated to genes using complementary DNA libraries from Atlantic salmon Salmo salar and rainbow trout O. mykiss. Differentially expressed genes, as estimated by differences in the number of sequence tags, were found in all pairwise comparisons of libraries (freshwater versus saltwater = 40 genes; fall versus spring = 11 genes; and spawning versus nonspawning = 51 genes). The gene for ependymin, an extracellular glycoprotein involved in behavioral plasticity in fish, exhibited the most differential expression among the three groupings. Reverse transcription polymerase chain reaction analysis verified the differential expression of ependymin between the fall- and spring-run samples. These LongSAGE libraries, the first reported for Chinook salmon, provide a window of the transcriptional changes during Chinook salmon return migration to freshwater and spawning and increase the amount of expressed sequence data. Title: Differential gene expression between fall- and spring-run Chinook salmon assessed by long serial analysis of gene expression Author: Banks, Michael A., McArthur, Andrew G., Birkeland, Shanda R., Bernier, Jeremiah C., Cipriano, Michael J. Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been well described. Current methods, such as long serial analysis of gene expression (LongSAGE) and microarrays, allow gene expression to be analyzed for thousands of genes simultaneously. To investigate whether differential gene expression is observed between fall- and spring-run Chinook salmon from California's Central Valley, LongSAGE libraries were constructed. Three libraries containing between 25,512 and 29,372 sequenced tags (21 base pairs/tag) were generated using messenger RNA from the brains of adult Chinook salmon returning in fall and spring and from one ocean-caught Chinook salmon. Tags were annotated to genes using complementary DNA libraries from Atlantic salmon Salmo salar and rainbow trout O. mykiss. Differentially expressed genes, as estimated by differences in the number of sequence tags, were found in all pairwise comparisons of libraries (freshwater versus saltwater = 40 genes; fall versus spring = 11 genes; and spawning versus nonspawning = 51 genes). The gene for ependymin, an extracellular glycoprotein involved in behavioral plasticity in fish, exhibited the most differential expression among the three groupings. Reverse transcription polymerase chain reaction analysis verified the differential expression of ependymin between the fall- and spring-run samples. These LongSAGE libraries, the first reported for Chinook salmon, provide a window of the transcriptional changes during Chinook salmon return migration to freshwater and spawning and increase the amount of expressed sequence data. Close

• 31. [Article] Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction

  Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular ...

  Citation × Citation Citation Abstract Copy Title: Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction Author: Shaklee, James B., Bentzen, Paul, Olsen, Jeffrey B., Young, Sewall, Banks, Michael A. Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular concern in supportive breeding programs, in which misidentification of individuals to population may result in progeny of mixed heritage, which, in turn, results in the erosion of the genetic population structure and of the existing genetic diversity and local adaptations of the target population. We evaluated two classes of genetic markers, allozymes and microsatellites, for estimating population identity of pink salmon Oncorhynchus gorbuscha in a supportive breeding program on the Dungeness River in Washington State. Fall-run pink salmon of the Dungeness River are the target of restoration, but they presumably overlap, in terms of timing, with an earlier summer run. Both marker types revealed similarly low estimates of relative genetic differentiation ( <(theta)over cap> = 0.02), which suggests that there is little variation in allele frequency among populations. However, microsatellites provided a more accurate estimate of population identity. When applying a log-likelihood ratio criterion of greater than 1.3, 74.8% of individuals were correctly assigned to population using microsatellites (versus 3.1% of individuals using allozymes). The difference in assignment accuracy was best predicted by the statistic <(delta)over cap>, which estimates cumulative allele frequency differences among populations. Our results suggest that genetic markers with many alleles are preferred when populations exhibit little genetic differentiation (as is the case in pink salmon), because <(delta)over cap> is more likely to be large, presumably as a result of genetic drift at each allele. The use of microsatellites to select fall-run pink salmon for supportive breeding confirmed the run-timing overlap and prevented unintentional crosses between the two populations. Title: Microsatellites Reveal Population Identity of Individual Pink Salmon to Allow Supportive Breeding of a Population at Risk of Extinction Author: Shaklee, James B., Bentzen, Paul, Olsen, Jeffrey B., Young, Sewall, Banks, Michael A. Efforts to restore depressed populations of Pacific salmon Oncorhynchus spp. are often hampered by the inability to assign population identity to individuals in an admixture. This knowledge is of particular concern in supportive breeding programs, in which misidentification of individuals to population may result in progeny of mixed heritage, which, in turn, results in the erosion of the genetic population structure and of the existing genetic diversity and local adaptations of the target population. We evaluated two classes of genetic markers, allozymes and microsatellites, for estimating population identity of pink salmon Oncorhynchus gorbuscha in a supportive breeding program on the Dungeness River in Washington State. Fall-run pink salmon of the Dungeness River are the target of restoration, but they presumably overlap, in terms of timing, with an earlier summer run. Both marker types revealed similarly low estimates of relative genetic differentiation ( <(theta)over cap> = 0.02), which suggests that there is little variation in allele frequency among populations. However, microsatellites provided a more accurate estimate of population identity. When applying a log-likelihood ratio criterion of greater than 1.3, 74.8% of individuals were correctly assigned to population using microsatellites (versus 3.1% of individuals using allozymes). The difference in assignment accuracy was best predicted by the statistic <(delta)over cap>, which estimates cumulative allele frequency differences among populations. Our results suggest that genetic markers with many alleles are preferred when populations exhibit little genetic differentiation (as is the case in pink salmon), because <(delta)over cap> is more likely to be large, presumably as a result of genetic drift at each allele. The use of microsatellites to select fall-run pink salmon for supportive breeding confirmed the run-timing overlap and prevented unintentional crosses between the two populations. Close

• 32. [Article] Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries ...

  Citation × Citation Citation Abstract Copy Title: Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option Author: Bartholomew, J. L., Fogerty, R., True, K., Buckles, G. R., Alexander, J. D., Foott, J. S., Hallett, S. L., Bolick, A., Stone, R. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/uahh20/current Title: Production of Ceratonova shasta Myxospores from Salmon Carcasses: Carcass Removal Is Not a Viable Management Option Author: Bartholomew, J. L., Fogerty, R., True, K., Buckles, G. R., Alexander, J. D., Foott, J. S., Hallett, S. L., Bolick, A., Stone, R. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the American Fisheries Society and published by Taylor & Francis. It can be found at: http://www.tandfonline.com/toc/uahh20/current Close

• 33. [Article] Some factors influencing the trends of salmon populations in Oregon

  Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. ...

  Citation × Citation Citation Abstract Copy Title: Some factors influencing the trends of salmon populations in Oregon Author: Johnson, Donald R., Oregon. Fish Commission, Hodges, John I., McKernan, Donald L. (Donald Lynn), 1918-1979 Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. Exceptional winter floods seem to produce poor resulting runs. Low summer water flows also appear to produce lower than average runs on some rivers, while higher summer flows appear to be followed by an increase in the resultant runs. The intensity of fishing was also found to affect the subsequent productivity of the fisheries. Increases in fishing effort on the rivers studied were followed in succeeding cycles by a lower catch, and when the fishing effort declined the ensuing production of silver salmon generally increased. Other factors studied did not bear a significant relationship to the fluctuations or trends of productivity of silver salmon. Title: Some factors influencing the trends of salmon populations in Oregon Author: Johnson, Donald R., Oregon. Fish Commission, Hodges, John I., McKernan, Donald L. (Donald Lynn), 1918-1979 Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. Exceptional winter floods seem to produce poor resulting runs. Low summer water flows also appear to produce lower than average runs on some rivers, while higher summer flows appear to be followed by an increase in the resultant runs. The intensity of fishing was also found to affect the subsequent productivity of the fisheries. Increases in fishing effort on the rivers studied were followed in succeeding cycles by a lower catch, and when the fishing effort declined the ensuing production of silver salmon generally increased. Other factors studied did not bear a significant relationship to the fluctuations or trends of productivity of silver salmon. Close

• 34. [Article] The Effect of Temperature on the Survival of Chinook Eggs and Fry

  Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature ...

  Citation × Citation Citation Abstract Copy Title: The Effect of Temperature on the Survival of Chinook Eggs and Fry Author: Teose, Maarika Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature regimes a®ect the growth and survival of threatened spring- run Chinook salmon. An ARIMA time-series model was used to approximate each temperature record and a MATLAB program was written to simulate the growth of an individual Chinook salmon from egg to fry. Given a spawning distribution, the model was used to grow several hundred ¯sh in each temperature regime for a given period of time, and the distributions of ¯sh weights were recorded in histograms. The distributions of ¯sh weights above and below the dam were signi¯cantly di®erent (p < 0:001) and the temperature regime above the dam produced larger ¯sh than the temperature regime below the dam (p < 0:001). We conclude that the temperature regime below the dam (prior to the construction of the temperature control structure) is less conducive to the survival of Chinook than the temperature regime above. Title: The Effect of Temperature on the Survival of Chinook Eggs and Fry Author: Teose, Maarika Temperature data from above and below the Cougar Dam collected by the U.S. Geological Survey prior to the construction of the temperature control structure was analyzed to determine how the di®ering temperature regimes a®ect the growth and survival of threatened spring- run Chinook salmon. An ARIMA time-series model was used to approximate each temperature record and a MATLAB program was written to simulate the growth of an individual Chinook salmon from egg to fry. Given a spawning distribution, the model was used to grow several hundred ¯sh in each temperature regime for a given period of time, and the distributions of ¯sh weights were recorded in histograms. The distributions of ¯sh weights above and below the dam were signi¯cantly di®erent (p < 0:001) and the temperature regime above the dam produced larger ¯sh than the temperature regime below the dam (p < 0:001). We conclude that the temperature regime below the dam (prior to the construction of the temperature control structure) is less conducive to the survival of Chinook than the temperature regime above. Close

• 35. [Article] Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska

  Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. ...

  Citation × Citation Citation Abstract Copy Title: Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska Author: Adams, Noah Swayambhu Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. The study populations consisted of early- and late-run chinook salmon in each of the Kenai and Kasilof rivers in Alaska, and a single population from the Minam River, Oregon, that provided a relative scale for the differences among the Alaskan populations. Two segments of mtDNA were amplified separately using the polymerase chain reaction (PCR) and then digested with 14 to 16 restriction enzymes. Results showed that the two early runs were genetically similar to each other but different from either of the late runs. The late runs were different from each other based on the frequency of the common haplotypes. The Minam River stock shared two haplotypes with the Alaskan stocks and displayed one unique haplotype. The frequency difference in the shared haplotypes together with the presence of a unique haplotype allowed us to separate the Oregon population from those in Alaska. In the protein analysis, each of the five populations was examined at 30 allozyme loci to determine variation within and between the runs. Based on 14 polymorphic loci, Minam River chinook salmon were genetically distinct from the Alaskan populations. Within the Alaskan populations, the two early runs were most similar to each other but different from the two late runs; the two late runs were also genetically most similar to each other. Based on all loci, protein electrophoresis proved to be a useful technique to separate stocks of chinook salmon. On a locus by locus basis, however, mtDNA was more powerful. Both mtDNA and allozyme analysis suggest that chinook salmon may segregate into genetically different early and late forms within a drainage. Title: Variation in mitochondrial DNA and allozymes discriminates early and late forms of chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof Rivers, Alaska Author: Adams, Noah Swayambhu Genetic differences between early and late forms of Alaskan chinook salmon (Oncorhynchus tshawytscha) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis and protein electrophoresis. The study populations consisted of early- and late-run chinook salmon in each of the Kenai and Kasilof rivers in Alaska, and a single population from the Minam River, Oregon, that provided a relative scale for the differences among the Alaskan populations. Two segments of mtDNA were amplified separately using the polymerase chain reaction (PCR) and then digested with 14 to 16 restriction enzymes. Results showed that the two early runs were genetically similar to each other but different from either of the late runs. The late runs were different from each other based on the frequency of the common haplotypes. The Minam River stock shared two haplotypes with the Alaskan stocks and displayed one unique haplotype. The frequency difference in the shared haplotypes together with the presence of a unique haplotype allowed us to separate the Oregon population from those in Alaska. In the protein analysis, each of the five populations was examined at 30 allozyme loci to determine variation within and between the runs. Based on 14 polymorphic loci, Minam River chinook salmon were genetically distinct from the Alaskan populations. Within the Alaskan populations, the two early runs were most similar to each other but different from the two late runs; the two late runs were also genetically most similar to each other. Based on all loci, protein electrophoresis proved to be a useful technique to separate stocks of chinook salmon. On a locus by locus basis, however, mtDNA was more powerful. Both mtDNA and allozyme analysis suggest that chinook salmon may segregate into genetically different early and late forms within a drainage. Close

• 36. [Article] Conflicts in the multiple use of Wallowa Lake

  The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians ...

  Citation × Citation Citation Abstract Copy Title: Conflicts in the multiple use of Wallowa Lake Author: Craig, Kenneth Mackenzie The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians but the advent of irrigation in the area by the early settlers eliminated the blueback salmon (oncorhynchus nerka) run that spawned in the lake. This was caused by the establishment of unscreened irrigation ditches in the Wallowa River below the lake and the construction of a concrete dam in the outlet of the lake by the Associated Ditch Companies. The dam raised the natural level of the lake 28.4 feet, creating an irrigation reservoir. The use of this water for irrigation purposes has caused considerable erosion along the steep banks of the east and west moraines, reducing the desirability of the beaches and hampering the use of boating facilities. The Pacific Power and Light Company used a considerable amount of water from the lake for their generating plant in Joseph from 1929 to 1956. This limited the number of times the lake was filled to capacity, lessening the amount of sloughing of the relatively undeveloped shoreline property around the lake since the greatest damage occurred when the lake was full. After 1950, many more people purchased lots and built cabins on the west moraine and became increasingly aware of the erosion of their property. The erosion problem increased sharply after the Joseph power plant was abandoned in 1956, enabling the Associated Ditch Companies to fill the reservoir to capacity nearly every year since that time. Increased dissatisfaction by the cabin owners with the management practices of the Associated Ditch Companies resulted in a lawsuit in which the ditch companies were found guilty of trespass of private property by exceeding their storage rights. Although the fine in this instance was negligible, future confrontations appear to be inevitable due to the increasing influence of recreationists in an area once considered the exclusive domain of agriculture and power interests. Future cooperation between these conflicting interests is vital in order to realize the full potential of the multiple uses of the lake. Title: Conflicts in the multiple use of Wallowa Lake Author: Craig, Kenneth Mackenzie The purpose of this thesis is to examine the problem of the increasing competition between recreation and irrigation at Wallowa Lake. Originally Wallowa Lake was an abundant source of fish for the Indians but the advent of irrigation in the area by the early settlers eliminated the blueback salmon (oncorhynchus nerka) run that spawned in the lake. This was caused by the establishment of unscreened irrigation ditches in the Wallowa River below the lake and the construction of a concrete dam in the outlet of the lake by the Associated Ditch Companies. The dam raised the natural level of the lake 28.4 feet, creating an irrigation reservoir. The use of this water for irrigation purposes has caused considerable erosion along the steep banks of the east and west moraines, reducing the desirability of the beaches and hampering the use of boating facilities. The Pacific Power and Light Company used a considerable amount of water from the lake for their generating plant in Joseph from 1929 to 1956. This limited the number of times the lake was filled to capacity, lessening the amount of sloughing of the relatively undeveloped shoreline property around the lake since the greatest damage occurred when the lake was full. After 1950, many more people purchased lots and built cabins on the west moraine and became increasingly aware of the erosion of their property. The erosion problem increased sharply after the Joseph power plant was abandoned in 1956, enabling the Associated Ditch Companies to fill the reservoir to capacity nearly every year since that time. Increased dissatisfaction by the cabin owners with the management practices of the Associated Ditch Companies resulted in a lawsuit in which the ditch companies were found guilty of trespass of private property by exceeding their storage rights. Although the fine in this instance was negligible, future confrontations appear to be inevitable due to the increasing influence of recreationists in an area once considered the exclusive domain of agriculture and power interests. Future cooperation between these conflicting interests is vital in order to realize the full potential of the multiple uses of the lake. Close

• 37. [Article] The Umpqua River study : a joint report

  The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass ...

  Citation × Citation Citation Abstract Copy Title: The Umpqua River study : a joint report Author: Oregon. State Game Commission, Oregon. Fish Commission The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass and sturgeon. The winter steelhead, striped bass, and shad runs appear to be maintaining themselves. The runs of the other species appear to be in various stages of depletion. Major factors which have contributed to this depletion are: overfishing by the commercial fishery and more recently the sport fishery; and barriers such as log jams, "splash" damns, mill dam and hydroelectric developments. Other factors which may be of importance are: predation; unscreened gravity water diversions; water removal by pumping for irrigation, industrial, and municipal use; and fluctuations in water levels due to meterological conditions. The total run of spring chinook salmon into the Umpqua River in 1946 was estimated to be 4,400 fish of which approximately 935 were jacks. (fish under 20 inches). The fishing mortality of shad of commercial size, in the 1946 Umpqua River run, was estimated to be 50 percent. The total catch of the various species of salmon by the commercial and sport fisheries in 1946 were as follows: Under a proper management program, an average sustained yield of several times in the 1946 catches may be expected. During 1946, anglers spent at least $292,700 in this area while fishing for salmon and trout in the Umpqua River. The capital investment was estimated to be $2,402,500. The commercial fishery products of salmon steelhead, shad, striped bass, pilchards, and crabs taken from the Umpqua River in 1946 had a wholesale valur of $652,400. The capital investment was not determined. Title: The Umpqua River study : a joint report Author: Oregon. State Game Commission, Oregon. Fish Commission The species of anadromous fish entering the Umpqua River are: chinook salmon (spring, summer, and fall runs), silver salmon, steelhead trout (summer and winter runs), cutthroat trout, shad, striped bass and sturgeon. The winter steelhead, striped bass, and shad runs appear to be maintaining themselves. The runs of the other species appear to be in various stages of depletion. Major factors which have contributed to this depletion are: overfishing by the commercial fishery and more recently the sport fishery; and barriers such as log jams, "splash" damns, mill dam and hydroelectric developments. Other factors which may be of importance are: predation; unscreened gravity water diversions; water removal by pumping for irrigation, industrial, and municipal use; and fluctuations in water levels due to meterological conditions. The total run of spring chinook salmon into the Umpqua River in 1946 was estimated to be 4,400 fish of which approximately 935 were jacks. (fish under 20 inches). The fishing mortality of shad of commercial size, in the 1946 Umpqua River run, was estimated to be 50 percent. The total catch of the various species of salmon by the commercial and sport fisheries in 1946 were as follows: Under a proper management program, an average sustained yield of several times in the 1946 catches may be expected. During 1946, anglers spent at least $292,700 in this area while fishing for salmon and trout in the Umpqua River. The capital investment was estimated to be $2,402,500. The commercial fishery products of salmon steelhead, shad, striped bass, pilchards, and crabs taken from the Umpqua River in 1946 had a wholesale valur of $652,400. The capital investment was not determined. Close

• 38. [Article] Proposed regional general permit for stream restoration : programmatic biological opinion

  On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation ...

  Citation × Citation Citation Abstract Copy Title: Proposed regional general permit for stream restoration : programmatic biological opinion On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation for programmatic coverage for a proposed Regional General Permit (RGP) for certain stream restoration activities (habitat restoration using large wood or boulders throughout the State of Oregon) requiring COE approval. The Biological Assessment (BA) provided with the request determined that the proposed activities covered under the RGP would be likely to adversely affect anadromous fish species listed under the ESA (Table 1). Species considered in this Biological Opinion (Opinion) are: Snake River sockeye salmon (Oncorhynchus nerka); Snake River spring /summer chinook salmon (O. tshawytscha); Snake River fall chinook salmon (O. tshawytscha); Lower Columbia River steelhead (O. mykiss); Upper Columbia River steelhead (O. mykiss); Snake River steelhead (O. mykiss); Upper Willamette River steelhead (O. mykiss); Middle Columbia River steelhead (O. mykiss); Columbia River chum salmon (O. keta); Lower Columbia River chinook salmon (O. tshawytscha); Upper Willamette River chinook salmon (O. tshawytscha); Upper Columbia River spring run chinook salmon (O. tshawytscha); S. Oregon/N. California Coast coho salmon (O. kisutch); and Oregon Coast coho salmon (O. kisutch). On April 18, 2000, NMFS received a letter from COE providing additional information on proposed criteria to be included in the RGP. On May 12, 2000, NMFS received an e-mail with further proposed criteria to be included in the RGP. Title: Proposed regional general permit for stream restoration : programmatic biological opinion On April 7, 2000, the National Marine Fisheries Service (NMFS) received a request from the U.S. Army Corps of Engineers, Portland District (COE) for Endangered Species Act (ESA) section 7 formal consultation for programmatic coverage for a proposed Regional General Permit (RGP) for certain stream restoration activities (habitat restoration using large wood or boulders throughout the State of Oregon) requiring COE approval. The Biological Assessment (BA) provided with the request determined that the proposed activities covered under the RGP would be likely to adversely affect anadromous fish species listed under the ESA (Table 1). Species considered in this Biological Opinion (Opinion) are: Snake River sockeye salmon (Oncorhynchus nerka); Snake River spring /summer chinook salmon (O. tshawytscha); Snake River fall chinook salmon (O. tshawytscha); Lower Columbia River steelhead (O. mykiss); Upper Columbia River steelhead (O. mykiss); Snake River steelhead (O. mykiss); Upper Willamette River steelhead (O. mykiss); Middle Columbia River steelhead (O. mykiss); Columbia River chum salmon (O. keta); Lower Columbia River chinook salmon (O. tshawytscha); Upper Willamette River chinook salmon (O. tshawytscha); Upper Columbia River spring run chinook salmon (O. tshawytscha); S. Oregon/N. California Coast coho salmon (O. kisutch); and Oregon Coast coho salmon (O. kisutch). On April 18, 2000, NMFS received a letter from COE providing additional information on proposed criteria to be included in the RGP. On May 12, 2000, NMFS received an e-mail with further proposed criteria to be included in the RGP. Close

• 39. [Article] Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout

  On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under ...

  Citation × Citation Citation Abstract Copy Title: Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under the Endangered Species Act (ESA). The effective date for the final listing was May 24, 1999, and the ESU is defined as 'all naturally spawned populations of spring-run chinook salmon residing below impassable natural barriers' (64 FR 14308). Critical habitat for this ESU was proposed on March 9, 1998 (63 FR 11482), and this proposed designation is still pending at the time of this Biological Opinion. Upper Willamette River chinook salmon occur within the action area of this consultation. The Upper Willamette River steelhead ESU was listed as threatened under the ESA (64 FR 14517; March 25, 1999) simultaneously with Upper Willamette River chinook salmon, but its range does not include the action area for this consultation 1 , and it is not addressed in this Biological Opinion. The objective of this Biological Opinion is to address the effects of providing a license to operate the McKenzie project, as proposed by FERC, on listed UW chinook salmon and bull trout, and to determine if this federal action by FERC will jeopardize the continued existence of either species. It will also serve as a conference opinion on the effects of the proposed action on proposed UW chinook salmon critical habitat. Until FERC issues a license for the McKenzie project incorporating the reasonable and prudent measures of this Biological Opinion, the existing project has no authorization for take of listed species Title: Biological opinion on effects of issuance of license for McKenzie (Bigelow) Hydropower Project on Upper Willamette River chinook salmon, its proposed critical habitat, and bull trout On March 24, 1999, the National Marine Fisheries Service (NMFS) published its final decision to list the Upper Willamette River evolutionarily significant unit (ESU) of chinook salmon as threatened under the Endangered Species Act (ESA). The effective date for the final listing was May 24, 1999, and the ESU is defined as 'all naturally spawned populations of spring-run chinook salmon residing below impassable natural barriers' (64 FR 14308). Critical habitat for this ESU was proposed on March 9, 1998 (63 FR 11482), and this proposed designation is still pending at the time of this Biological Opinion. Upper Willamette River chinook salmon occur within the action area of this consultation. The Upper Willamette River steelhead ESU was listed as threatened under the ESA (64 FR 14517; March 25, 1999) simultaneously with Upper Willamette River chinook salmon, but its range does not include the action area for this consultation 1 , and it is not addressed in this Biological Opinion. The objective of this Biological Opinion is to address the effects of providing a license to operate the McKenzie project, as proposed by FERC, on listed UW chinook salmon and bull trout, and to determine if this federal action by FERC will jeopardize the continued existence of either species. It will also serve as a conference opinion on the effects of the proposed action on proposed UW chinook salmon critical habitat. Until FERC issues a license for the McKenzie project incorporating the reasonable and prudent measures of this Biological Opinion, the existing project has no authorization for take of listed species Close

• 40. [Article] When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon

  This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more ...

  Citation × Citation Citation Abstract Copy Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon Author: Teel, David J., Miller, Jessica A., Tomaro, Londi M., Peterson, William T. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/journals/meps/meps-home/. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close