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• 1. [Article] Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline

  The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, ...

  Citation × Citation Citation Abstract Copy Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Close

• 2. [Article] Status of Nutria (Myocastor coypus) Populations in the Pacific Northwest and Development of Associated Control and Management Strategies, with an Emphasis on Metropolitan Habitats

  The nutria (Myocastor coypus) is a semi-aquatic rodent native to South America that was introduced to the Pacific Northwest, USA, in the 1930s. Primary damage categories from this invasive species include ...

  Citation × Citation Citation Abstract Copy Title: Status of Nutria (Myocastor coypus) Populations in the Pacific Northwest and Development of Associated Control and Management Strategies, with an Emphasis on Metropolitan Habitats Author: Sheffels, Trevor Robert Year: 2013 The nutria (Myocastor coypus) is a semi-aquatic rodent native to South America that was introduced to the Pacific Northwest, USA, in the 1930s. Primary damage categories from this invasive species include burrowing and herbivory, resulting in habitat degradation. Nutria have become well-established in metropolitan habitats, and anecdotal information suggests the problem has increased in recent years. However, little regional research on the species has been conducted. The scope of this research, which emphasizes metropolitan habitats, includes three primary foci in relation to nutria populations in the Pacific Northwest: modeling habitat suitability, assessing activity and movement patterns, and identifying and managing negative impacts. Large-scale management of any invasive species requires understanding of the current and potential future population distribution. Cold temperatures have been assumed to be a limiting factor for the geographic distribution of nutria populations, but this assumption had not been explicitly tested. A mechanistic habitat suitability model based on winter temperatures performed well in predicting nutria distribution in the Pacific Northwest and nationally. Regional results suggest nutria currently occupy most accessible suitable habitat. However, coupling the model with future climate change data suggests a much larger suitable habitat zone regionally and nationally in the near future. Management of an invasive species on a local scale requires region-specific information about behavior patterns. Radio-telemetry tracking of local nutria populations in metropolitan habitats suggested higher diurnal activity levels than reported elsewhere. Activity areas were also on the lower end of reported nutria home ranges, suggesting the studied metropolitan wetland sites represent core habitat for nutria in the region. Comparison of two transmitter attachment methods, a neck collar and a tail mount, did not identify a clearly superior attachment method for short-term nutria behavior studies. The presence of nutria in metropolitan habitats in the Pacific Northwest necessitates the need to expand the limited management techniques available for these habitats. Standard Vexar® plastic mesh tubes very effectively mitigated nutria herbivory damage to woody vegetation live stakes planted in a metropolitan habitat restoration site. A recently developed nutria multiple-capture cage trap captured larger nutria and reduced non-target captures compared to a standard cage trap. The design of the multiple-capture trap, however, prevented multiple-capture events because small nutria escaped the trap. This research contributes substantially to previously limited information about nutria in the Pacific Northwest and resulted in several new findings. Climate change modeling provides the first evidence that nutria ranges could expand in the near future. Evaluation of new radio-telemetry methods will benefit future behavior studies. The assessment of new damage prevention tools provides more options for the management of nutria in urban habitats. Management recommendations include creating regional nutria management plans, identifying and targeting priority monitoring regions, finding key stakeholders, focusing on public education, and initiating a pilot control program. Recommendations for research include evaluating effects on native fauna, conducting disease surveys, assessing the extent of damage, continuing habitat suitability analysis, and developing population indices. Title: Status of Nutria (Myocastor coypus) Populations in the Pacific Northwest and Development of Associated Control and Management Strategies, with an Emphasis on Metropolitan Habitats Author: Sheffels, Trevor Robert Year: 2013 The nutria (Myocastor coypus) is a semi-aquatic rodent native to South America that was introduced to the Pacific Northwest, USA, in the 1930s. Primary damage categories from this invasive species include burrowing and herbivory, resulting in habitat degradation. Nutria have become well-established in metropolitan habitats, and anecdotal information suggests the problem has increased in recent years. However, little regional research on the species has been conducted. The scope of this research, which emphasizes metropolitan habitats, includes three primary foci in relation to nutria populations in the Pacific Northwest: modeling habitat suitability, assessing activity and movement patterns, and identifying and managing negative impacts. Large-scale management of any invasive species requires understanding of the current and potential future population distribution. Cold temperatures have been assumed to be a limiting factor for the geographic distribution of nutria populations, but this assumption had not been explicitly tested. A mechanistic habitat suitability model based on winter temperatures performed well in predicting nutria distribution in the Pacific Northwest and nationally. Regional results suggest nutria currently occupy most accessible suitable habitat. However, coupling the model with future climate change data suggests a much larger suitable habitat zone regionally and nationally in the near future. Management of an invasive species on a local scale requires region-specific information about behavior patterns. Radio-telemetry tracking of local nutria populations in metropolitan habitats suggested higher diurnal activity levels than reported elsewhere. Activity areas were also on the lower end of reported nutria home ranges, suggesting the studied metropolitan wetland sites represent core habitat for nutria in the region. Comparison of two transmitter attachment methods, a neck collar and a tail mount, did not identify a clearly superior attachment method for short-term nutria behavior studies. The presence of nutria in metropolitan habitats in the Pacific Northwest necessitates the need to expand the limited management techniques available for these habitats. Standard Vexar® plastic mesh tubes very effectively mitigated nutria herbivory damage to woody vegetation live stakes planted in a metropolitan habitat restoration site. A recently developed nutria multiple-capture cage trap captured larger nutria and reduced non-target captures compared to a standard cage trap. The design of the multiple-capture trap, however, prevented multiple-capture events because small nutria escaped the trap. This research contributes substantially to previously limited information about nutria in the Pacific Northwest and resulted in several new findings. Climate change modeling provides the first evidence that nutria ranges could expand in the near future. Evaluation of new radio-telemetry methods will benefit future behavior studies. The assessment of new damage prevention tools provides more options for the management of nutria in urban habitats. Management recommendations include creating regional nutria management plans, identifying and targeting priority monitoring regions, finding key stakeholders, focusing on public education, and initiating a pilot control program. Recommendations for research include evaluating effects on native fauna, conducting disease surveys, assessing the extent of damage, continuing habitat suitability analysis, and developing population indices. Close

• 3. [Article] Modeling Predator Habitat to Enhance Reintroduction Planning

  Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations ...

  Citation × Citation Citation Abstract Copy Title: Modeling Predator Habitat to Enhance Reintroduction Planning Author: Halsey, Shiloh Michael, Zielinski, William J., Scheller, Robert M. Year: 2015 Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations in the western United States have declined substantially in the last century. Reintroduction plans are underway, but the ability of the species to establish a selfsustaining population is affected by predation from its primary predator, the bobcat (Lynx rufus). Objectives To develop a habitat model that incorporates both habitat of the focal species and the spatial patterning of predator habitat. To locate areas of densely aggregated habitat that would be suitable for reintroduction. Methods Using camera survey data, we modeled the association between bobcat presence and environmental features using a classification tree. We applied this model to a spatial analysis of fisher habitat and identified reintroduction areas in the southern Washington Cascade Range. Results The classification tree predicted bobcat detection based on elevation and mean tree diameter. The final model identified fisher reintroduction locations primarily in or near existing wilderness areas. Fisher habitat areas identified considering both habitat and predation risk differed from those identified without considering predation. Conclusion Our spatial approach is unique among fisher reintroduction plans by accounting for both resource requirements and risk of predation. It can be used as a template for future reintroduction efforts in other regions and for other species. Using similar models to refine population management and reintroduction should improve the probability of successful population establishment and stability. Title: Modeling Predator Habitat to Enhance Reintroduction Planning Author: Halsey, Shiloh Michael, Zielinski, William J., Scheller, Robert M. Year: 2015 Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations in the western United States have declined substantially in the last century. Reintroduction plans are underway, but the ability of the species to establish a selfsustaining population is affected by predation from its primary predator, the bobcat (Lynx rufus). Objectives To develop a habitat model that incorporates both habitat of the focal species and the spatial patterning of predator habitat. To locate areas of densely aggregated habitat that would be suitable for reintroduction. Methods Using camera survey data, we modeled the association between bobcat presence and environmental features using a classification tree. We applied this model to a spatial analysis of fisher habitat and identified reintroduction areas in the southern Washington Cascade Range. Results The classification tree predicted bobcat detection based on elevation and mean tree diameter. The final model identified fisher reintroduction locations primarily in or near existing wilderness areas. Fisher habitat areas identified considering both habitat and predation risk differed from those identified without considering predation. Conclusion Our spatial approach is unique among fisher reintroduction plans by accounting for both resource requirements and risk of predation. It can be used as a template for future reintroduction efforts in other regions and for other species. Using similar models to refine population management and reintroduction should improve the probability of successful population establishment and stability. Close

• 4. [Article] The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science

  In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project ...

  Citation × Citation Citation Abstract Copy Title: The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science Author: Gulick, Kristen S. Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Authors: Kristen S. Gulick, Marion Dresner, Nikkie West Presenter: Kristen S. Gulick Title: The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science Author: Gulick, Kristen S. Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Authors: Kristen S. Gulick, Marion Dresner, Nikkie West Presenter: Kristen S. Gulick Close

• 5. [Article] Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species

  In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project ...

  Citation × Citation Citation Abstract Copy Title: Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species Author: Gulick, Kristen S., West, Nikkie, Dresner, Marion Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Title: Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species Author: Gulick, Kristen S., West, Nikkie, Dresner, Marion Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Close

• 6. [Article] Postfledging Survival and Habitat Use of Spotted Towhees (Pipilo maculatus) in an Urban Park

  Habitat fragmentation, and the resulting increase in edge habitat, has important effects on birds, including the increased probability of nest predation, changes in habitat structure, and the increased ...

  Citation × Citation Citation Abstract Copy Title: Postfledging Survival and Habitat Use of Spotted Towhees (Pipilo maculatus) in an Urban Park Author: Shipley, Amy Ann Year: 2011 Habitat fragmentation, and the resulting increase in edge habitat, has important effects on birds, including the increased probability of nest predation, changes in habitat structure, and the increased presence of non-native plant species. It is critical to understand the effects of fragmentation at all stages of the avian life cycle, including the often overlooked postfledging period. Because much of juvenile mortality occurs during the immediate postfledging period, and juvenile mortality contributes substantially to population dynamics, it is necessary to understand if fledgling survival is reduced in edge habitats and if fledglings' survival is influenced by their habitat use. During 2008 and 2009 I radio-tracked 52 fledgling Spotted Towhees (Pipilo maculatus) during the 30-day postfledging period in a 24-ha urban park near Portland, Oregon. Thirty-six fledglings (69%) survived the 27-day tracking period (an estimated 62.1% survived the entire 30-day postfledging period). At least 9 of 16 predation events were attributable to domestic cats (Felis domesticus) or Western Screech-owls (Megascops kennicottii). Although fledglings were more likely to be found near edges than the park interior, fledglings located closer to park edges had a higher probability of dying. However, I found that towhee nests were more likely to be found near edges, nests near edges produced more fledglings, and nestlings near edges were heavier. I used a STELLA-based stochastic model of nest success and fledgling survival to show that the benefits initially gained by nesting near edges were reversed during the postfledging period. The number of fledglings per nest that survived to the end of the 30-day postfledging period was significantly lower near edges than in the park interior. This apparent preference for nesting near edges, paired with higher fledgling mortality near edges, is consistent with the idea that edges are ecological traps. Fledgling habitat was significantly more structurally dense and had a greater abundance of non-native plant species, particularly Himalayan Blackberry (Rubus armeniacus), than nest habitat. Towhees avoided English Ivy (Hedera helix) for both nesting and care of fledglings. However, fledgling survival was not related to vegetation characteristics, which suggests that increased fledgling mortality near edges was a direct result of increased predator abundance or predation near edges, and was not an artifact of changes in habitat near edges. My results help to establish that fledgling survival and the unique habitat requirements of fledglings should be considered along with nest success and nest habitat when examining the effects of habitat fragmentation on bird populations. More broadly, this study has important implications for conservation, as it exemplifies how phenomena such as ecological traps created by anthropogenic changes in the environment can be overlooked if only one life history stage is studied. Title: Postfledging Survival and Habitat Use of Spotted Towhees (Pipilo maculatus) in an Urban Park Author: Shipley, Amy Ann Year: 2011 Habitat fragmentation, and the resulting increase in edge habitat, has important effects on birds, including the increased probability of nest predation, changes in habitat structure, and the increased presence of non-native plant species. It is critical to understand the effects of fragmentation at all stages of the avian life cycle, including the often overlooked postfledging period. Because much of juvenile mortality occurs during the immediate postfledging period, and juvenile mortality contributes substantially to population dynamics, it is necessary to understand if fledgling survival is reduced in edge habitats and if fledglings' survival is influenced by their habitat use. During 2008 and 2009 I radio-tracked 52 fledgling Spotted Towhees (Pipilo maculatus) during the 30-day postfledging period in a 24-ha urban park near Portland, Oregon. Thirty-six fledglings (69%) survived the 27-day tracking period (an estimated 62.1% survived the entire 30-day postfledging period). At least 9 of 16 predation events were attributable to domestic cats (Felis domesticus) or Western Screech-owls (Megascops kennicottii). Although fledglings were more likely to be found near edges than the park interior, fledglings located closer to park edges had a higher probability of dying. However, I found that towhee nests were more likely to be found near edges, nests near edges produced more fledglings, and nestlings near edges were heavier. I used a STELLA-based stochastic model of nest success and fledgling survival to show that the benefits initially gained by nesting near edges were reversed during the postfledging period. The number of fledglings per nest that survived to the end of the 30-day postfledging period was significantly lower near edges than in the park interior. This apparent preference for nesting near edges, paired with higher fledgling mortality near edges, is consistent with the idea that edges are ecological traps. Fledgling habitat was significantly more structurally dense and had a greater abundance of non-native plant species, particularly Himalayan Blackberry (Rubus armeniacus), than nest habitat. Towhees avoided English Ivy (Hedera helix) for both nesting and care of fledglings. However, fledgling survival was not related to vegetation characteristics, which suggests that increased fledgling mortality near edges was a direct result of increased predator abundance or predation near edges, and was not an artifact of changes in habitat near edges. My results help to establish that fledgling survival and the unique habitat requirements of fledglings should be considered along with nest success and nest habitat when examining the effects of habitat fragmentation on bird populations. More broadly, this study has important implications for conservation, as it exemplifies how phenomena such as ecological traps created by anthropogenic changes in the environment can be overlooked if only one life history stage is studied. Close

• 7. [Article] Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington

  Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern ...

  Citation × Citation Citation Abstract Copy Title: Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington Author: Carpenter, Forrest Michael Year: 2016 Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern Washington where this study was conducted. Many native salmonid populations have declined in abundance since the early 1900s due to a variety of climate- and human-driven forces. Westslope Cutthroat Trout are especially sensitive to habitat loss or degradation and to climate change. Together, climate change, habitat degradation, and non-native salmonid invasions are contributing to increasingly fragmented WCT populations. Ongoing and predicted future warming trends are expected to further fragment these populations and isolate them in headwater stream reaches, with populations in the spatial margins of their distributions facing greater risk. Native salmonid populations are often separated or isolated by natural or artificial upstream migration barriers (i.e., waterfalls, culverts, etc.). Prior to continuing conservation and management actions targeting WCT, it is imperative to understand habitat requirements of this keystone species in fragmented areas. Field survey data were collected in the summer of 2015 on channel geomorphic characteristics and WCT presence/absence in 26 streams located in the Colville National Forest. A clear spatial separation was observed between Eastern Brook Trout (Salvenius fontinalis, EBT) and WCT above four culvert road crossings and the habitat in both of these areas was compared statistically to identify explicit differences. This dataset was also analyzed using logistic regression modeling to determine the best habitat predictors of the presence of isolated WCT populations existing upstream of these crossing. In general, stream habitat in the Middle and South Forks of Mill Creek had low large substrate, high fine sediments, and exhibited pool-riffle channel morphology. Pool habitat supporting isolated WCT was significantly smaller, in terms of volume and surface area, than pool habitat supporting sympatric populations of WCT and EBT, largely due to the headwater nature of channel units supporting isolated WCT populations. Additionally, due to the extreme drought conditions during 2015, stream flow was substantially diminished in the study area causing these reaches to be highly fragmented and largely disconnected from the rest of the stream channel. Fine sediments were generally higher in headwater reaches supporting isolated WCT, including in pools and riffles, which was unexpected, mainly because they exist above sediment delivery points in the longitudinal extent of the system. Logistic regression analysis indicated that the presence of isolated WCT populations was primarily positively associated with an increase in large wood and boulders, and negatively associated with increasing gravel, bedrock, habitat unit length, depth, and width (Significant x2, R2=0.174, misclassification rate = 14.9%, α=0.05). The final model correctly predicted 37.5% of isolated WCT presence observations and 96.5% of the WCT/EBT presence observations significantly better than by chance alone (k=0.81). This model, in fact, may be useful in identifying limited habitat due to the fragmented nature of the channel units supporting IWCT. Large wood and boulders were positively correlated to WCT presence, likely because both are important in the formation of pools and cascades. Channel unit length, width, depth, active channel width as well as gravel and bedrock substrates, were all negatively associated with WCT presence. This suggests that isolated WCT are primarily associated with small headwater cascades with complex shelter, which may provide greater thermal and predation refuge compared to shallow glide or large pool habitats. Future model analysis should include additional habitat variables such as water temperature, stream gradient, and species interactions to strengthen the prediction of Westslope Cutthroat Trout presence. Overall, I concluded that differences in stream habitat above and below blocking culverts are not driving Westslope Cutthroat Trout distributions in the study area due to confounding factors such as the presence of problematic barriers and small sample size. I also conclude that future conservation and management decisions specific to WCT should prioritize complex cascade habitat in headwater stream reaches because of the type and quantity of habitat they may provide, especially during severe drought or low flow conditions. Title: Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington Author: Carpenter, Forrest Michael Year: 2016 Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern Washington where this study was conducted. Many native salmonid populations have declined in abundance since the early 1900s due to a variety of climate- and human-driven forces. Westslope Cutthroat Trout are especially sensitive to habitat loss or degradation and to climate change. Together, climate change, habitat degradation, and non-native salmonid invasions are contributing to increasingly fragmented WCT populations. Ongoing and predicted future warming trends are expected to further fragment these populations and isolate them in headwater stream reaches, with populations in the spatial margins of their distributions facing greater risk. Native salmonid populations are often separated or isolated by natural or artificial upstream migration barriers (i.e., waterfalls, culverts, etc.). Prior to continuing conservation and management actions targeting WCT, it is imperative to understand habitat requirements of this keystone species in fragmented areas. Field survey data were collected in the summer of 2015 on channel geomorphic characteristics and WCT presence/absence in 26 streams located in the Colville National Forest. A clear spatial separation was observed between Eastern Brook Trout (Salvenius fontinalis, EBT) and WCT above four culvert road crossings and the habitat in both of these areas was compared statistically to identify explicit differences. This dataset was also analyzed using logistic regression modeling to determine the best habitat predictors of the presence of isolated WCT populations existing upstream of these crossing. In general, stream habitat in the Middle and South Forks of Mill Creek had low large substrate, high fine sediments, and exhibited pool-riffle channel morphology. Pool habitat supporting isolated WCT was significantly smaller, in terms of volume and surface area, than pool habitat supporting sympatric populations of WCT and EBT, largely due to the headwater nature of channel units supporting isolated WCT populations. Additionally, due to the extreme drought conditions during 2015, stream flow was substantially diminished in the study area causing these reaches to be highly fragmented and largely disconnected from the rest of the stream channel. Fine sediments were generally higher in headwater reaches supporting isolated WCT, including in pools and riffles, which was unexpected, mainly because they exist above sediment delivery points in the longitudinal extent of the system. Logistic regression analysis indicated that the presence of isolated WCT populations was primarily positively associated with an increase in large wood and boulders, and negatively associated with increasing gravel, bedrock, habitat unit length, depth, and width (Significant x2, R2=0.174, misclassification rate = 14.9%, α=0.05). The final model correctly predicted 37.5% of isolated WCT presence observations and 96.5% of the WCT/EBT presence observations significantly better than by chance alone (k=0.81). This model, in fact, may be useful in identifying limited habitat due to the fragmented nature of the channel units supporting IWCT. Large wood and boulders were positively correlated to WCT presence, likely because both are important in the formation of pools and cascades. Channel unit length, width, depth, active channel width as well as gravel and bedrock substrates, were all negatively associated with WCT presence. This suggests that isolated WCT are primarily associated with small headwater cascades with complex shelter, which may provide greater thermal and predation refuge compared to shallow glide or large pool habitats. Future model analysis should include additional habitat variables such as water temperature, stream gradient, and species interactions to strengthen the prediction of Westslope Cutthroat Trout presence. Overall, I concluded that differences in stream habitat above and below blocking culverts are not driving Westslope Cutthroat Trout distributions in the study area due to confounding factors such as the presence of problematic barriers and small sample size. I also conclude that future conservation and management decisions specific to WCT should prioritize complex cascade habitat in headwater stream reaches because of the type and quantity of habitat they may provide, especially during severe drought or low flow conditions. Close

• 8. [Article] Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA

  Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, ...

  Citation × Citation Citation Abstract Copy Title: Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA Author: Dinsmore, Stephen J., Lauten, David J., Castelein, Kathleen J., Gaines, Eleanor P., Stern, Mark A. Year: 2014 Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, USA, to Baja California, Mexico, and in disjunct interior sites. The Pacific coast population is federally listed as Threatened; habitat loss and nest loss to a suite of terrestrial and avian predators are thought to be primary factors limiting population growth in this species. In coastal Oregon, USA, a consortium of state and federal management agencies deployed nest exclosures on active Snowy Plover nests, initiated a lethal predator management program, and conducted local-scale habitat management in an effort to boost local productivity. During 1990–2009, we monitored 1,951 Snowy Plover nests at 9 sites with varying treatments. We examined the effectiveness of 3 types of nest exclosures (large, small, and outfitted with electric wire), predator removal, and habitat management on nest survival. Habitat management to remove invasive grasses and provide more suitable nesting substrate more than doubled nest survival. Predator management or use of any of the 3 types of exclosures also affected nest survival. There appeared to be no additional benefit to using both approaches, but the biological relevance of these findings is unclear because of site differences in treatments applied. Importantly, these management techniques only affected nesting success; their effect on other contributions to population viability (e.g., fledging success) was not correlated with nesting success. This long-term study illustrates the short-term benefits and tradeoffs of using nest exclosures, predator management, and habitat restoration to improve nesting success. Although we gained broader insight into the relative efficacy of common management techniques to improve avian nesting success, we cannot yet determine how improved nest success contributes to population growth. Title: Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA Author: Dinsmore, Stephen J., Lauten, David J., Castelein, Kathleen J., Gaines, Eleanor P., Stern, Mark A. Year: 2014 Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, USA, to Baja California, Mexico, and in disjunct interior sites. The Pacific coast population is federally listed as Threatened; habitat loss and nest loss to a suite of terrestrial and avian predators are thought to be primary factors limiting population growth in this species. In coastal Oregon, USA, a consortium of state and federal management agencies deployed nest exclosures on active Snowy Plover nests, initiated a lethal predator management program, and conducted local-scale habitat management in an effort to boost local productivity. During 1990–2009, we monitored 1,951 Snowy Plover nests at 9 sites with varying treatments. We examined the effectiveness of 3 types of nest exclosures (large, small, and outfitted with electric wire), predator removal, and habitat management on nest survival. Habitat management to remove invasive grasses and provide more suitable nesting substrate more than doubled nest survival. Predator management or use of any of the 3 types of exclosures also affected nest survival. There appeared to be no additional benefit to using both approaches, but the biological relevance of these findings is unclear because of site differences in treatments applied. Importantly, these management techniques only affected nesting success; their effect on other contributions to population viability (e.g., fledging success) was not correlated with nesting success. This long-term study illustrates the short-term benefits and tradeoffs of using nest exclosures, predator management, and habitat restoration to improve nesting success. Although we gained broader insight into the relative efficacy of common management techniques to improve avian nesting success, we cannot yet determine how improved nest success contributes to population growth. Close

• 9. [Article] Habitat and Distribution of the Ruffed Lemur, "Varecia", North of the Bay of Antongil in Northeastern Madagascar

  Here we present information on the conservation status of ruffed lemurs (Varecia) north of the Bay of Antongil in northeastern Madagascar. Two contiguous protected areas were recently established that ...

  Citation × Citation Citation Abstract Copy Title: Habitat and Distribution of the Ruffed Lemur, "Varecia", North of the Bay of Antongil in Northeastern Madagascar Author: Hekkala, Evon R., Rakotondratsima, Marius, Vasey, Natalie Year: 2007 Here we present information on the conservation status of ruffed lemurs (Varecia) north of the Bay of Antongil in northeastern Madagascar. Two contiguous protected areas were recently established that traverse this region via blocks of forest connected by narrow forest corridors: the Masoala National Park, which expands further to the east, and the Makira Protected Area, which expands further to the west and northwest. The two extant ruffed lemurs, Varecia variegata and V. rubra, overlapped in this region historically and, on rare occasions, hybridized. As such, land north of the Bay of Antongil is a critical part of the ruffed lemur's northern geographic range. Habitat surveys and interviews with local informants were carried out in this region to determine the extent of suitable habitat for Varecia populations, to assess the extent of human exploitation of this genus, and to obtain data on the western and northern range limits of V. rubra. Interviews indicated that there are populations of V. rubraas far northwest as the confluence of the Antainambalana and Sahantaha Rivers. Surveys and interviews revealed extensive habitat degradation and lemur hunting in the three major river drainages north of the Bay of Antongil. The recent establishment of protected forest blocks and forest corridors in the region was critical, as these links will provide the only connections between Varecia populations that would otherwise be entirely isolated in forest patches surrounded by agricultural land. The geo-referenced habitat survey and the summary of interview results provided here can be used as comparators for future population and habitat assessments following the establishment of the protected areas. A primary direction for future work should be to examine how Varecia populations are adapting to conditions in and near forest corridors. Title: Habitat and Distribution of the Ruffed Lemur, "Varecia", North of the Bay of Antongil in Northeastern Madagascar Author: Hekkala, Evon R., Rakotondratsima, Marius, Vasey, Natalie Year: 2007 Here we present information on the conservation status of ruffed lemurs (Varecia) north of the Bay of Antongil in northeastern Madagascar. Two contiguous protected areas were recently established that traverse this region via blocks of forest connected by narrow forest corridors: the Masoala National Park, which expands further to the east, and the Makira Protected Area, which expands further to the west and northwest. The two extant ruffed lemurs, Varecia variegata and V. rubra, overlapped in this region historically and, on rare occasions, hybridized. As such, land north of the Bay of Antongil is a critical part of the ruffed lemur's northern geographic range. Habitat surveys and interviews with local informants were carried out in this region to determine the extent of suitable habitat for Varecia populations, to assess the extent of human exploitation of this genus, and to obtain data on the western and northern range limits of V. rubra. Interviews indicated that there are populations of V. rubraas far northwest as the confluence of the Antainambalana and Sahantaha Rivers. Surveys and interviews revealed extensive habitat degradation and lemur hunting in the three major river drainages north of the Bay of Antongil. The recent establishment of protected forest blocks and forest corridors in the region was critical, as these links will provide the only connections between Varecia populations that would otherwise be entirely isolated in forest patches surrounded by agricultural land. The geo-referenced habitat survey and the summary of interview results provided here can be used as comparators for future population and habitat assessments following the establishment of the protected areas. A primary direction for future work should be to examine how Varecia populations are adapting to conditions in and near forest corridors. Close

• 10. [Article] Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management

  Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics ...

  Citation × Citation Citation Abstract Copy Title: Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management Author: Guderyahn, Laura B., Smithers, Ashley P., Mims, Meryl C. Year: 2016 Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics of urban aquatic habitat promote or inhibit amphibian occupancy and recruitment is limited. In this study, we examined amphibian community composition and occurrence patterns in ponds, wetlands, and swales of Gresham, Oregon. We collected occurrence data for five native amphibians: northwestern salamander (Ambystoma gracile), long-toed salamander (A. macrodactylum), Pacific chorus frog (Pseudacris regilla), northern red-legged frog (Rana aurora aurora), and rough-skinned newt (Taricha granulosa) as well as one non-native amphibian, the American bullfrog (Lithobates catesbeianus). One hundred sites were surveyed from 2007 to 2013. Local and landscape attributes were characterized for each site, and potential drivers of species occupancy were evaluated using a combination of multivariate approaches and generalized linear models. In general, percent impervious surface and distance to nearest forest patch, both associated with urbanization, were negatively correlated with site occupancy for all species. Non-native vegetation was also negatively associated with occupancy of three species (long-toed salamanders, Pacific chorus frogs, and northern red-legged frogs). In contrast, occupancy was positively correlated with pond depth and hydroperiod length for all species. We found evidence of two distinct groups of co-occurring amphibian species driven by habitat depth and hydroperiod. Finally, we report results of threshold analyses that examined species-specific habitat associations. This study describes urban habitat associations of a native amphibian community, identifies factors with positive, negative or mixed relationships with amphibian species, and is an important step in informing the management of urban aquatic habitat to promote persistence of native amphibians. Title: Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management Author: Guderyahn, Laura B., Smithers, Ashley P., Mims, Meryl C. Year: 2016 Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics of urban aquatic habitat promote or inhibit amphibian occupancy and recruitment is limited. In this study, we examined amphibian community composition and occurrence patterns in ponds, wetlands, and swales of Gresham, Oregon. We collected occurrence data for five native amphibians: northwestern salamander (Ambystoma gracile), long-toed salamander (A. macrodactylum), Pacific chorus frog (Pseudacris regilla), northern red-legged frog (Rana aurora aurora), and rough-skinned newt (Taricha granulosa) as well as one non-native amphibian, the American bullfrog (Lithobates catesbeianus). One hundred sites were surveyed from 2007 to 2013. Local and landscape attributes were characterized for each site, and potential drivers of species occupancy were evaluated using a combination of multivariate approaches and generalized linear models. In general, percent impervious surface and distance to nearest forest patch, both associated with urbanization, were negatively correlated with site occupancy for all species. Non-native vegetation was also negatively associated with occupancy of three species (long-toed salamanders, Pacific chorus frogs, and northern red-legged frogs). In contrast, occupancy was positively correlated with pond depth and hydroperiod length for all species. We found evidence of two distinct groups of co-occurring amphibian species driven by habitat depth and hydroperiod. Finally, we report results of threshold analyses that examined species-specific habitat associations. This study describes urban habitat associations of a native amphibian community, identifies factors with positive, negative or mixed relationships with amphibian species, and is an important step in informing the management of urban aquatic habitat to promote persistence of native amphibians. Close

• 11. [Article] Influence of Wetland Landscape Structure on Duck Nest Success at Malheur National Wildlife Refuge, Oregon

  The decline of waterfowl populations and their requisite wetland habitats remains a concern. Because migratory bird refuges are often artificial landscapes of actively managed wetlands, and wildlife populations ...

  Citation × Citation Citation Abstract Copy Title: Influence of Wetland Landscape Structure on Duck Nest Success at Malheur National Wildlife Refuge, Oregon Author: Craver, Daniel Robert Year: 2010 The decline of waterfowl populations and their requisite wetland habitats remains a concern. Because migratory bird refuges are often artificial landscapes of actively managed wetlands, and wildlife populations experience their greatest change during the breeding season, refuges should be designed to maximize breeding habitat. While past nest success studies have focused on at-nest variables, new approaches are needed to evaluate the effect of composition and configuration of plant communities at the landscape scale. This study aims to quantify landscape patterns within individual refuge management units to determine influence upon historical nesting success averages of ducks at Malheur National Wildlife Refuge in southeastern Oregon. The Mayfield estimate of nest success for 8 duck species yields a survival rate of 25% for the years 1987-1998 with a range of 0-74% across 48 management units. FRAGSTATS was used to calculate a suite of 9 landscape pattern metrics per unit at the class-level for each of 3 wetland habitat classes, and at the landscape-level using all habitat types. These 36 variables were tested for association with survival rate using Pearson R correlation. Results suggest fragmentation of dry meadow habitat; patch size, complexity, and extensiveness of wet meadow habitat; and diversity of habitats across the landscape positively influence duck nest success at the scale of the individual management unit. Title: Influence of Wetland Landscape Structure on Duck Nest Success at Malheur National Wildlife Refuge, Oregon Author: Craver, Daniel Robert Year: 2010 The decline of waterfowl populations and their requisite wetland habitats remains a concern. Because migratory bird refuges are often artificial landscapes of actively managed wetlands, and wildlife populations experience their greatest change during the breeding season, refuges should be designed to maximize breeding habitat. While past nest success studies have focused on at-nest variables, new approaches are needed to evaluate the effect of composition and configuration of plant communities at the landscape scale. This study aims to quantify landscape patterns within individual refuge management units to determine influence upon historical nesting success averages of ducks at Malheur National Wildlife Refuge in southeastern Oregon. The Mayfield estimate of nest success for 8 duck species yields a survival rate of 25% for the years 1987-1998 with a range of 0-74% across 48 management units. FRAGSTATS was used to calculate a suite of 9 landscape pattern metrics per unit at the class-level for each of 3 wetland habitat classes, and at the landscape-level using all habitat types. These 36 variables were tested for association with survival rate using Pearson R correlation. Results suggest fragmentation of dry meadow habitat; patch size, complexity, and extensiveness of wet meadow habitat; and diversity of habitats across the landscape positively influence duck nest success at the scale of the individual management unit. Close

• 12. [Article] Differences in Sexual Dimorphism and Influences of Sexual Dichromatism on Crypsis Among Populations of the Jumping Spider Habronattus oregonensis

  Crypsis can be an important mechanism of predator avoidance for organisms. However, many species exhibit sexual dichromatism, in which the males possess a suite of colorations in order to attract female ...

  Citation × Citation Citation Abstract Copy Title: Differences in Sexual Dimorphism and Influences of Sexual Dichromatism on Crypsis Among Populations of the Jumping Spider Habronattus oregonensis Author: Bazzano, Jason Year: 2011 Crypsis can be an important mechanism of predator avoidance for organisms. However, many species exhibit sexual dichromatism, in which the males possess a suite of colorations in order to attract female attention. The resulting differences in crypsis between the males and females can provide insight into the relative strengths of the sexually and naturally selective forces shaping the coloration of the organism, as well as clues regarding potential sensory biases of the selecting sex. In this study, I examine variation in the coloration of four Pacific Northwest populations of the sexually dimorphic and dichromatic polygynous species of jumping spider Habronattus oregonensis and compare the coloration of different body regions of the spiders to their habitats. I also investigate differences in relative size of a male sexual ornament, the enlarged first leg tibia. Field work for this study was conducted in June and July of 2009. The three main foci of this study are 1) to compare the degree of color matching of females and their habitat to the degree of color matching of males and their habitat, evaluating whether sexual selection on males has reduced their degree of crypsis relative to that of females, 2) if there is indeed a difference in crypsis between the sexes, to gauge whether there are similar divergences from crypsis among the populations - both in the quantitative amount of divergences as well as the colorimetric direction of such divergences, and 3) whether there is any variation in sexual ornament size among populations. Male first leg tibia size is a sexual character that is presumably not influenced by habitat coloration; differences in male tibia allometry among populations would provide supporting evidence for the hypothesis that sexual selection is indeed maintaining phenotypic differences among the populations, regardless of habitat location and color. I found a high degree of conformity of hue and chroma between male and female spiders and their habitats, with three notable exceptions. The most extreme difference in coloration between spider and habitat was that of the Gorge and Siskiyou population male anteriors. The anteriors had proportionally less green and more ultraviolet reflectance than their habitat. Second, the Mt. Hood and Tillamook population male abdomens diverged from their habitat in a similar, although less pronounced manner to that of the Gorge and Siskiyou population male anteriors: they had proportionally less green and more UV reflectance. Third, female abdomens of all populations were highly variable in chroma, despite having hues that generally matched their habitat. Tibia area relative to body size of Gorge and Siskiyou population males was significantly smaller than that of Mt. Hood and Tillamook population males. The lower level of background hue matching among males compared to females implies that sexual selection has directly conflicted with natural selection, resulting in impaired crypsis. While the reduced crypsis of the Gorge and Siskiyou population males is centered on their anterior (the primary body region presented to the females during courtship), the deviations from crypsis in the Mt. Hood and Tillamook population males are highest on their abdomen, although the degree of contrast is lower than that of the Gorge and Siskiyou population anteriors. These differences in coloration between the Mt. Hood and Tillamook population male abdomens and their habitats are in the same colorimetric direction as those of the Gorge and Siskiyou population anteriors and their habitat; this may indicate a sensory bias of the females, conserved in all four populations, selecting for male reflectance with a higher UV to green ratio. The fact that Mt. Hood and Tillamook population male abdomens have a more modest reduction in background matching compared to Gorge and Siskiyou population male anteriors may be due to the search methods of flying predators (e.g., spider wasps); the dorsum would presumably be more conspicuous to predators than the anterior, and would thus be subject to more intense selection for crypsis despite sexual selection to the contrary. The variability of abdomen coloration of females of both morphs may indicate that selection for crypsis is less strong among females than among males. One possible reason for this would be if females spent less time in the exposed courtship habitat than males, a conclusion implied by a highly male-skewed sex ratio encountered during field collections. Like the differences in coloration between different males of different populations, the significant differences in male tibia size also imply variability in the intensity of sexual selection. Relative importance of male coloration and tibia size may be weighted differently among populations, operating under similar constraints on reductions in survival accrued by developing these characters. The high degree of variation found among the populations implies that there is a degree of reproductive isolation among the chromatically and morphologically dissimilar populations. However, the similarity of the environments in which the populations existed, the close geographic proximity of some of the dissimilar populations, and the lack of any substantial geographic boundaries between the populations imply that this isolation is not maintained through extrinsic factors. Rather, it would seem that the interpopulational diversity is maintained by sexual selection. However, evidence from morphology and coloration suggest that the generation of this diversity is not evolving exclusively under sexual selection pressure, but rather is constrained to a degree by natural selection. Title: Differences in Sexual Dimorphism and Influences of Sexual Dichromatism on Crypsis Among Populations of the Jumping Spider Habronattus oregonensis Author: Bazzano, Jason Year: 2011 Crypsis can be an important mechanism of predator avoidance for organisms. However, many species exhibit sexual dichromatism, in which the males possess a suite of colorations in order to attract female attention. The resulting differences in crypsis between the males and females can provide insight into the relative strengths of the sexually and naturally selective forces shaping the coloration of the organism, as well as clues regarding potential sensory biases of the selecting sex. In this study, I examine variation in the coloration of four Pacific Northwest populations of the sexually dimorphic and dichromatic polygynous species of jumping spider Habronattus oregonensis and compare the coloration of different body regions of the spiders to their habitats. I also investigate differences in relative size of a male sexual ornament, the enlarged first leg tibia. Field work for this study was conducted in June and July of 2009. The three main foci of this study are 1) to compare the degree of color matching of females and their habitat to the degree of color matching of males and their habitat, evaluating whether sexual selection on males has reduced their degree of crypsis relative to that of females, 2) if there is indeed a difference in crypsis between the sexes, to gauge whether there are similar divergences from crypsis among the populations - both in the quantitative amount of divergences as well as the colorimetric direction of such divergences, and 3) whether there is any variation in sexual ornament size among populations. Male first leg tibia size is a sexual character that is presumably not influenced by habitat coloration; differences in male tibia allometry among populations would provide supporting evidence for the hypothesis that sexual selection is indeed maintaining phenotypic differences among the populations, regardless of habitat location and color. I found a high degree of conformity of hue and chroma between male and female spiders and their habitats, with three notable exceptions. The most extreme difference in coloration between spider and habitat was that of the Gorge and Siskiyou population male anteriors. The anteriors had proportionally less green and more ultraviolet reflectance than their habitat. Second, the Mt. Hood and Tillamook population male abdomens diverged from their habitat in a similar, although less pronounced manner to that of the Gorge and Siskiyou population male anteriors: they had proportionally less green and more UV reflectance. Third, female abdomens of all populations were highly variable in chroma, despite having hues that generally matched their habitat. Tibia area relative to body size of Gorge and Siskiyou population males was significantly smaller than that of Mt. Hood and Tillamook population males. The lower level of background hue matching among males compared to females implies that sexual selection has directly conflicted with natural selection, resulting in impaired crypsis. While the reduced crypsis of the Gorge and Siskiyou population males is centered on their anterior (the primary body region presented to the females during courtship), the deviations from crypsis in the Mt. Hood and Tillamook population males are highest on their abdomen, although the degree of contrast is lower than that of the Gorge and Siskiyou population anteriors. These differences in coloration between the Mt. Hood and Tillamook population male abdomens and their habitats are in the same colorimetric direction as those of the Gorge and Siskiyou population anteriors and their habitat; this may indicate a sensory bias of the females, conserved in all four populations, selecting for male reflectance with a higher UV to green ratio. The fact that Mt. Hood and Tillamook population male abdomens have a more modest reduction in background matching compared to Gorge and Siskiyou population male anteriors may be due to the search methods of flying predators (e.g., spider wasps); the dorsum would presumably be more conspicuous to predators than the anterior, and would thus be subject to more intense selection for crypsis despite sexual selection to the contrary. The variability of abdomen coloration of females of both morphs may indicate that selection for crypsis is less strong among females than among males. One possible reason for this would be if females spent less time in the exposed courtship habitat than males, a conclusion implied by a highly male-skewed sex ratio encountered during field collections. Like the differences in coloration between different males of different populations, the significant differences in male tibia size also imply variability in the intensity of sexual selection. Relative importance of male coloration and tibia size may be weighted differently among populations, operating under similar constraints on reductions in survival accrued by developing these characters. The high degree of variation found among the populations implies that there is a degree of reproductive isolation among the chromatically and morphologically dissimilar populations. However, the similarity of the environments in which the populations existed, the close geographic proximity of some of the dissimilar populations, and the lack of any substantial geographic boundaries between the populations imply that this isolation is not maintained through extrinsic factors. Rather, it would seem that the interpopulational diversity is maintained by sexual selection. However, evidence from morphology and coloration suggest that the generation of this diversity is not evolving exclusively under sexual selection pressure, but rather is constrained to a degree by natural selection. Close

• 13. [Article] Koll Center Wetlands Natural Resources Maintenance Management Plan

  The intention of this plan is to provide a vision and guidelines for maintaining and improving the ecological health of Koll Center Wetlands in the short and long term. Although the plan will change over ...

  Citation × Citation Citation Abstract Copy Title: Koll Center Wetlands Natural Resources Maintenance Management Plan Author: Clayton, Meredith Year: 2006 The intention of this plan is to provide a vision and guidelines for maintaining and improving the ecological health of Koll Center Wetlands in the short and long term. Although the plan will change over time, the goal is to quantify natural resource needs spatially, temporally, and economically. Koll Center Wetlands is part of the Greenway/Fanno Creek/Koll Center Wetlands Park complex. The nearly 13 acre park is dominated by aquatic habitats that attract a wide variety of wildlife, particularly birds. The park grounds are not easily traversed and experience limited human use, but there are many viewpoints from which the park is easily and commonly observed by visitors. The park serves as valuable habitat for both local and migratory wildlife as it connects with the many other terrestrial and aquatic habitats of the park complex, forming a large wildlife corridor in an otherwise urban setting. The aquatic habitats respond to fluctuating water levels, creating seasonally diverse habitat conditions that support a variety of birds, mammals, and reptiles. A mixed forest grows on the southern slope of the park, housing a heron rookery and many well-established oaks and conifers. A weir located just past the south border of the property enables the wetlands to provide the services of storm detention and water filtration for runoff from the surrounding business park. Runoff from parking lots and landscaped areas can contain contaminants and nutrients capable of jeopardizing stream health. Settling and filtration of these compounds occurs as water travels north to south in the wetland, making the water that ultimately reaches Fanno Creek cleaner than it began. Since Koll Center Wetlands is located within a highly urbanized area, direct and indirect impacts to the natural areas from the surrounding region are considered in the maintenance management plan (MMP) for the park and its individual habitat units. These include, but are not limited to, direct human impacts, invasive plants and animals, and ongoing natural processes in plant communities. Title: Koll Center Wetlands Natural Resources Maintenance Management Plan Author: Clayton, Meredith Year: 2006 The intention of this plan is to provide a vision and guidelines for maintaining and improving the ecological health of Koll Center Wetlands in the short and long term. Although the plan will change over time, the goal is to quantify natural resource needs spatially, temporally, and economically. Koll Center Wetlands is part of the Greenway/Fanno Creek/Koll Center Wetlands Park complex. The nearly 13 acre park is dominated by aquatic habitats that attract a wide variety of wildlife, particularly birds. The park grounds are not easily traversed and experience limited human use, but there are many viewpoints from which the park is easily and commonly observed by visitors. The park serves as valuable habitat for both local and migratory wildlife as it connects with the many other terrestrial and aquatic habitats of the park complex, forming a large wildlife corridor in an otherwise urban setting. The aquatic habitats respond to fluctuating water levels, creating seasonally diverse habitat conditions that support a variety of birds, mammals, and reptiles. A mixed forest grows on the southern slope of the park, housing a heron rookery and many well-established oaks and conifers. A weir located just past the south border of the property enables the wetlands to provide the services of storm detention and water filtration for runoff from the surrounding business park. Runoff from parking lots and landscaped areas can contain contaminants and nutrients capable of jeopardizing stream health. Settling and filtration of these compounds occurs as water travels north to south in the wetland, making the water that ultimately reaches Fanno Creek cleaner than it began. Since Koll Center Wetlands is located within a highly urbanized area, direct and indirect impacts to the natural areas from the surrounding region are considered in the maintenance management plan (MMP) for the park and its individual habitat units. These include, but are not limited to, direct human impacts, invasive plants and animals, and ongoing natural processes in plant communities. Close

• 14. [Article] Rebuilding with Habitat: a Feasibility Study for a Portland Re-Store

  In September 1998 Habitat for Humanity's director asked our team to conduct a feasibility study on the possibility of opening a Habitat Re-Store in Portland, a store that would re-sell used building materials. ...

  Citation × Citation Citation Abstract Copy Title: Rebuilding with Habitat: a Feasibility Study for a Portland Re-Store Author: Spevak, Eli, Newman, Rebecca, Linssen, Barbara, Wertz, Clint Year: 1999 In September 1998 Habitat for Humanity's director asked our team to conduct a feasibility study on the possibility of opening a Habitat Re-Store in Portland, a store that would re-sell used building materials. In addition to exploring that question in the traditional manner - considering issues of supply and demand, local competition and potential market niches -- we found ourselves compelled by a deeper exploration of the possibilities. Given that the store would be a Habitat for Humanity venture.... how could the store be utilized to improve people's lives... to empower and to educate... to both gain from and give back to the community? With the following report we hope we have answered the original question and raised some new ones. Title: Rebuilding with Habitat: a Feasibility Study for a Portland Re-Store Author: Spevak, Eli, Newman, Rebecca, Linssen, Barbara, Wertz, Clint Year: 1999 In September 1998 Habitat for Humanity's director asked our team to conduct a feasibility study on the possibility of opening a Habitat Re-Store in Portland, a store that would re-sell used building materials. In addition to exploring that question in the traditional manner - considering issues of supply and demand, local competition and potential market niches -- we found ourselves compelled by a deeper exploration of the possibilities. Given that the store would be a Habitat for Humanity venture.... how could the store be utilized to improve people's lives... to empower and to educate... to both gain from and give back to the community? With the following report we hope we have answered the original question and raised some new ones. Close

• 15. [Article] The effect of salinity on habitat selection of two Oregon chiton species (Katharina tunicata and Mopalia hindsii)

  Adult specimens of Katharina tunicata (mean weight = 10.23 grams) and Mopalia hindsii (mean weight = 10.90 grams) were tested for osmotic stress tolerance and oxygen consumption rates in a series of salinities ...

  Citation × Citation Citation Abstract Copy Title: The effect of salinity on habitat selection of two Oregon chiton species (Katharina tunicata and Mopalia hindsii) Author: Rostal, David Carl Year: 1986 Adult specimens of Katharina tunicata (mean weight = 10.23 grams) and Mopalia hindsii (mean weight = 10.90 grams) were tested for osmotic stress tolerance and oxygen consumption rates in a series of salinities (120%, 100%, 80%, 60%, and 40% seawater) at 11°C and 16L:8D photoperiod. K. tunicata and M. hindsii displayed similar trends in percent body weight variation and volume regulatory responses to osmotic stress. However, K. tunicata experienced a significantly higher percent body weight increase than did M. hindsii in response to hypo-osmotic conditions (80%, 60%, and 40% seawater). The mean rates of oxygen consumption per salinity for the two species were not significantly different. Both species, however, showed reduced oxygen consumption rates and significantly increased weight gain in 40% seawater. SEM comparisons of radulae, ctenidia, and shape of the pallial groove revealed no significant differences between the species relevant to differences observed in habitat selection. Title: The effect of salinity on habitat selection of two Oregon chiton species (Katharina tunicata and Mopalia hindsii) Author: Rostal, David Carl Year: 1986 Adult specimens of Katharina tunicata (mean weight = 10.23 grams) and Mopalia hindsii (mean weight = 10.90 grams) were tested for osmotic stress tolerance and oxygen consumption rates in a series of salinities (120%, 100%, 80%, 60%, and 40% seawater) at 11°C and 16L:8D photoperiod. K. tunicata and M. hindsii displayed similar trends in percent body weight variation and volume regulatory responses to osmotic stress. However, K. tunicata experienced a significantly higher percent body weight increase than did M. hindsii in response to hypo-osmotic conditions (80%, 60%, and 40% seawater). The mean rates of oxygen consumption per salinity for the two species were not significantly different. Both species, however, showed reduced oxygen consumption rates and significantly increased weight gain in 40% seawater. SEM comparisons of radulae, ctenidia, and shape of the pallial groove revealed no significant differences between the species relevant to differences observed in habitat selection. Close

• 16. [Article] A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

  The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of ...

  Citation × Citation Citation Abstract Copy Title: A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment Author: Lindgren, Annie R., Pankey, Molly S., Hochberg, Frederick G., Oakley, Todd H. Year: 2012 The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of pelagic squids, fishes, and some marine mammals. However, little is known about the frequency of, and circumstances leading to, convergent evolution in the open ocean. Here, we present a comparative study of the molluscan class Cephalopoda, a marine group known to occupy habitats from the intertidal to the deep sea. Several lineages bear features that may coincide with a benthic or pelagic existence, making this a valuable group for testing hypotheses of correlated evolution. To test for convergence and correlation, we generate the most taxonomically comprehensive multi-gene phylogeny of cephalopods to date. We then create a character matrix of habitat type and morphological characters, which we use to infer ancestral character states and test for correlation between habitat and morphology. Our study utilizes a taxonomically well-sampled phylogeny to show convergent evolution in all six morphological characters we analyzed. Three of these characters also correlate with habitat. The presence of an autogenic photophore (those relying upon autonomous enzymatic light reactions) is correlated with a pelagic habitat, while the cornea and accessory nidamental gland correlate with a benthic lifestyle. Here, we present the first statistical tests for correlation between convergent traits and habitat in cephalopods to better understand the evolutionary history of characters that are adaptive in benthic or pelagic environments, respectively. Our study supports the hypothesis that habitat has influenced convergent evolution in the marine environment: benthic organisms tend to exhibit similar characteristics that confer protection from invasion by other benthic taxa, while pelagic organisms possess features that facilitate crypsis and communication in an environment lacking physical refuges. Features that have originated multiple times in distantly related lineages are likely adaptive for the organisms inhabiting a particular environment: studying the frequency and evolutionary history of such convergent characters can increase understanding of the underlying forces driving ecological and evolutionary transitions in the marine environment. Title: A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment Author: Lindgren, Annie R., Pankey, Molly S., Hochberg, Frederick G., Oakley, Todd H. Year: 2012 The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of pelagic squids, fishes, and some marine mammals. However, little is known about the frequency of, and circumstances leading to, convergent evolution in the open ocean. Here, we present a comparative study of the molluscan class Cephalopoda, a marine group known to occupy habitats from the intertidal to the deep sea. Several lineages bear features that may coincide with a benthic or pelagic existence, making this a valuable group for testing hypotheses of correlated evolution. To test for convergence and correlation, we generate the most taxonomically comprehensive multi-gene phylogeny of cephalopods to date. We then create a character matrix of habitat type and morphological characters, which we use to infer ancestral character states and test for correlation between habitat and morphology. Our study utilizes a taxonomically well-sampled phylogeny to show convergent evolution in all six morphological characters we analyzed. Three of these characters also correlate with habitat. The presence of an autogenic photophore (those relying upon autonomous enzymatic light reactions) is correlated with a pelagic habitat, while the cornea and accessory nidamental gland correlate with a benthic lifestyle. Here, we present the first statistical tests for correlation between convergent traits and habitat in cephalopods to better understand the evolutionary history of characters that are adaptive in benthic or pelagic environments, respectively. Our study supports the hypothesis that habitat has influenced convergent evolution in the marine environment: benthic organisms tend to exhibit similar characteristics that confer protection from invasion by other benthic taxa, while pelagic organisms possess features that facilitate crypsis and communication in an environment lacking physical refuges. Features that have originated multiple times in distantly related lineages are likely adaptive for the organisms inhabiting a particular environment: studying the frequency and evolutionary history of such convergent characters can increase understanding of the underlying forces driving ecological and evolutionary transitions in the marine environment. Close

• 17. [Article] Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community

  With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, ...

  Citation × Citation Citation Abstract Copy Title: Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community Author: Gonsalves, Sydney Marie Year: 2016 With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed the literature on urban invertebrate communities and diversity to better understand the role of green roofs in providing habitat in the context of the larger urban mosaic. My review concluded that, while other factors such as surrounding land use and connectivity are also important to specific invertebrate taxa, local habitat variables contribute substantially to the structure and diversity of urban invertebrate communities. The importance of local habitat variables in urban green spaces and strong support for the habitat complexity hypothesis in a number of other ecosystems has led to proposals that "biodiverse" roofs--those intentionally designed with varied substrate depth, greater plant diversity, or added elements such as logs or stones--would support greater invertebrate diversity, but there is currently limited peer reviewed data to support this. In order to address the habitat complexity hypothesis in the context of green roofs, in the second part of this study I surveyed three roofs designed primarily for stormwater management, three biodiverse roofs, and five ground-level green spaces, from March until September of 2014 in the Portland metropolitan area. Beetles (Coleoptera) were sampled bi-weekly as representatives of total species diversity. Biodiverse roofs had greater richness, abundance, and diversity of beetle species compared to stormwater roofs, but were not more diverse than ground sites. Both biodiverse roofs and ground sites had approximately 20% native beetle species while stormwater roofs had only 5%. Functional diversity was also higher on biodiverse roofs with an average of seven trophic groups represented, while stormwater roofs averaged only three. Ground sites, biodiverse roofs, and stormwater roofs each grouped distinctively in terms of beetle community composition and biodiverse roof communities were found to be positively correlated with roof age, percent plant cover, average plant height, and plant species richness. These results support the findings of previous studies on the importance of local variables in structuring urban invertebrate communities and suggest that biodiverse design can reliably increase greenroof diversity, with the caution that they remain no replacement for ground level conservation. Title: Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community Author: Gonsalves, Sydney Marie Year: 2016 With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed the literature on urban invertebrate communities and diversity to better understand the role of green roofs in providing habitat in the context of the larger urban mosaic. My review concluded that, while other factors such as surrounding land use and connectivity are also important to specific invertebrate taxa, local habitat variables contribute substantially to the structure and diversity of urban invertebrate communities. The importance of local habitat variables in urban green spaces and strong support for the habitat complexity hypothesis in a number of other ecosystems has led to proposals that "biodiverse" roofs--those intentionally designed with varied substrate depth, greater plant diversity, or added elements such as logs or stones--would support greater invertebrate diversity, but there is currently limited peer reviewed data to support this. In order to address the habitat complexity hypothesis in the context of green roofs, in the second part of this study I surveyed three roofs designed primarily for stormwater management, three biodiverse roofs, and five ground-level green spaces, from March until September of 2014 in the Portland metropolitan area. Beetles (Coleoptera) were sampled bi-weekly as representatives of total species diversity. Biodiverse roofs had greater richness, abundance, and diversity of beetle species compared to stormwater roofs, but were not more diverse than ground sites. Both biodiverse roofs and ground sites had approximately 20% native beetle species while stormwater roofs had only 5%. Functional diversity was also higher on biodiverse roofs with an average of seven trophic groups represented, while stormwater roofs averaged only three. Ground sites, biodiverse roofs, and stormwater roofs each grouped distinctively in terms of beetle community composition and biodiverse roof communities were found to be positively correlated with roof age, percent plant cover, average plant height, and plant species richness. These results support the findings of previous studies on the importance of local variables in structuring urban invertebrate communities and suggest that biodiverse design can reliably increase greenroof diversity, with the caution that they remain no replacement for ground level conservation. Close

• 18. [Article] A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry

  Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. ...

  Citation × Citation Citation Abstract Copy Title: A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry Author: Johnson, Amelia Lee Year: 2016 Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations. Title: A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry Author: Johnson, Amelia Lee Year: 2016 Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations. Close

• 19. [Article] Modeling the Distribution of Bobcats and Areas of Reintroduction for Fisher in the Southern Washington Cascades

  The fisher (Martes pennanti) is a medium sized member of the mustelid family that once roamed the forests of Washington and whose historic range in the western United States once spread throughout the ...

  Citation × Citation Citation Abstract Copy Title: Modeling the Distribution of Bobcats and Areas of Reintroduction for Fisher in the Southern Washington Cascades Author: Halsey, Shiloh Michael Year: 2013 The fisher (Martes pennanti) is a medium sized member of the mustelid family that once roamed the forests of Washington and whose historic range in the western United States once spread throughout the northern Rocky Mountains, the Cascade and Coast Ranges, and the Sierra Nevada (Carroll, Zielinski, and Noss 1999; Powell 1993, Spencer et al. 2011). Due to pressures from trapping and habitat fragmentation, the abundance of the species in the western United States has decreased dramatically and is thought to be limited to several small, isolated populations. In 2008, fishers were reintroduced to the Olympic Peninsula; however, bobcat (Lynx rufus) predation in the first years is thought to have killed off a significant portion of the released fisher hindering their ability to establish a self-sustaining population (Lewis et al. 2011). Other studies in the western United States have shown that bobcats can be a dramatic force on small or isolated fisher populations. The coniferous forest of the southern Washington Cascades is the possible site of a release of currently extirpated fishers. My research examines the distribution of bobcats in the region and explores the implication this and the habitat variables of the area have for a future reintroduction of fisher. The workflow of the research was a stepwise process of: 1) surveying forested areas in the southern Washington Cascades for the presence and absence of bobcat and acquiring previously completed survey data 2) using a classification tree to model the correlation of bobcat presence or absence with forest variables and 3) applying these relationships to spatial analysis the creation of maps showing areas of high ranking fisher habitat. The classification tree modeled the correlation between the forest variables and the results of the surveys, which included 145 bobcat absence observations and 39 presence observations. The model highlighted a 95% probability of absence above 1,303 m in elevation, 73% probability of absence in areas under 1,303 m in elevation and with a tree diameter value under 43.45 cm, 57% probability of absence in areas between 1,070 m and 1,303 m in elevation and with a tree diameter value above 43.45 cm, and an 89% probability of bobcat presence in areas under 1,070 m in elevation with a tree diameter value above 43.45 cm. I applied an upper elevation limit of 1,676 meters as a threshold for suitable habitat and only considered habitat suitable in cells with a tree diameter above 29 cm. The three locations highlighted as the most suitable areas for reintroduction due to a large amount of the highest ranking habitat and the largest aggregations of suitable habitat cells were around the William O. Douglas Wilderness that straddles the border of the Gifford Pinchot National Forest (GPNF) and the Wenatchee National Forest, another location in the Norse Peak Wilderness northeast of Mount Rainier, and a third location in Indian Heaven Wilderness in the southern portion of the GPNF. Title: Modeling the Distribution of Bobcats and Areas of Reintroduction for Fisher in the Southern Washington Cascades Author: Halsey, Shiloh Michael Year: 2013 The fisher (Martes pennanti) is a medium sized member of the mustelid family that once roamed the forests of Washington and whose historic range in the western United States once spread throughout the northern Rocky Mountains, the Cascade and Coast Ranges, and the Sierra Nevada (Carroll, Zielinski, and Noss 1999; Powell 1993, Spencer et al. 2011). Due to pressures from trapping and habitat fragmentation, the abundance of the species in the western United States has decreased dramatically and is thought to be limited to several small, isolated populations. In 2008, fishers were reintroduced to the Olympic Peninsula; however, bobcat (Lynx rufus) predation in the first years is thought to have killed off a significant portion of the released fisher hindering their ability to establish a self-sustaining population (Lewis et al. 2011). Other studies in the western United States have shown that bobcats can be a dramatic force on small or isolated fisher populations. The coniferous forest of the southern Washington Cascades is the possible site of a release of currently extirpated fishers. My research examines the distribution of bobcats in the region and explores the implication this and the habitat variables of the area have for a future reintroduction of fisher. The workflow of the research was a stepwise process of: 1) surveying forested areas in the southern Washington Cascades for the presence and absence of bobcat and acquiring previously completed survey data 2) using a classification tree to model the correlation of bobcat presence or absence with forest variables and 3) applying these relationships to spatial analysis the creation of maps showing areas of high ranking fisher habitat. The classification tree modeled the correlation between the forest variables and the results of the surveys, which included 145 bobcat absence observations and 39 presence observations. The model highlighted a 95% probability of absence above 1,303 m in elevation, 73% probability of absence in areas under 1,303 m in elevation and with a tree diameter value under 43.45 cm, 57% probability of absence in areas between 1,070 m and 1,303 m in elevation and with a tree diameter value above 43.45 cm, and an 89% probability of bobcat presence in areas under 1,070 m in elevation with a tree diameter value above 43.45 cm. I applied an upper elevation limit of 1,676 meters as a threshold for suitable habitat and only considered habitat suitable in cells with a tree diameter above 29 cm. The three locations highlighted as the most suitable areas for reintroduction due to a large amount of the highest ranking habitat and the largest aggregations of suitable habitat cells were around the William O. Douglas Wilderness that straddles the border of the Gifford Pinchot National Forest (GPNF) and the Wenatchee National Forest, another location in the Norse Peak Wilderness northeast of Mount Rainier, and a third location in Indian Heaven Wilderness in the southern portion of the GPNF. Close

• 20. [Article] Impacts of Columbia River Discharge on Salmonid Habitat: 2. Changes in Shallow-Water Habitat

  This is the second part of an investigation that analyzes human alteration of shallow-water habitat (SWH) available to juvenile salmonids in the tidal Lower Columbia River. Part 2 develops a one-dimensional, ...

  Citation × Citation Citation Abstract Copy Title: Impacts of Columbia River Discharge on Salmonid Habitat: 2. Changes in Shallow-Water Habitat Author: Jay, David A., Kukulka, Tobias Year: 2003 This is the second part of an investigation that analyzes human alteration of shallow-water habitat (SWH) available to juvenile salmonids in the tidal Lower Columbia River. Part 2 develops a one-dimensional, subtidal river stage model that explains ~90% of the stage variance in the tidal river. This model and the tidal model developed in part 1 (Kukulka and Jay, 2003) uncouple the nonlinear interaction of river tides and river stage by referring both to external forcing by river discharge, ocean tides, and atmospheric pressure. Applying the two models, daily high-water levels were predicted for a reach from rkm-50 to rkm-90 during 1974 to 1998, the period of contemporary management. Predicted water levels were related to the bathymetry and topography to determine the changes in shallow-water habitat area (SWHA) caused by flood control dikes and altered flow management. Model results suggest that diking and a >40% reduction of peak flows have reduced SWHA by ~62% during the crucial spring freshet period during which juvenile salmon use of SWHA is maximal. Taken individually, diking and flow cycle alteration reduced spring freshet SWHA by 52% and 29%, respectively. SWHA has been both displaced to lower elevations and modified in its character because tidal range has increased. Our models of these processes are economical for the very long simulations (seasons to centuries) needed to understand historic changes and climate impacts on SWH. Through analysis of the nonlinear processes controlling surface elevation in a tidal river, we have identified some of the mechanisms that link freshwater discharge to SWH and salmonid survival. Title: Impacts of Columbia River Discharge on Salmonid Habitat: 2. Changes in Shallow-Water Habitat Author: Jay, David A., Kukulka, Tobias Year: 2003 This is the second part of an investigation that analyzes human alteration of shallow-water habitat (SWH) available to juvenile salmonids in the tidal Lower Columbia River. Part 2 develops a one-dimensional, subtidal river stage model that explains ~90% of the stage variance in the tidal river. This model and the tidal model developed in part 1 (Kukulka and Jay, 2003) uncouple the nonlinear interaction of river tides and river stage by referring both to external forcing by river discharge, ocean tides, and atmospheric pressure. Applying the two models, daily high-water levels were predicted for a reach from rkm-50 to rkm-90 during 1974 to 1998, the period of contemporary management. Predicted water levels were related to the bathymetry and topography to determine the changes in shallow-water habitat area (SWHA) caused by flood control dikes and altered flow management. Model results suggest that diking and a >40% reduction of peak flows have reduced SWHA by ~62% during the crucial spring freshet period during which juvenile salmon use of SWHA is maximal. Taken individually, diking and flow cycle alteration reduced spring freshet SWHA by 52% and 29%, respectively. SWHA has been both displaced to lower elevations and modified in its character because tidal range has increased. Our models of these processes are economical for the very long simulations (seasons to centuries) needed to understand historic changes and climate impacts on SWH. Through analysis of the nonlinear processes controlling surface elevation in a tidal river, we have identified some of the mechanisms that link freshwater discharge to SWH and salmonid survival. Close