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• 1. [Article] Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon

  Abstract -- Bacterial kidney disease (BKD) caused by Renibacterium salmoninarum (Rs) is a serious problem among Pacific Northwest salmon hatcheries and has raised concerns that salmon reared in hatcheries ...

  Citation × Citation Citation Abstract Copy Title: Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon Abstract -- Bacterial kidney disease (BKD) caused by Renibacterium salmoninarum (Rs) is a serious problem among Pacific Northwest salmon hatcheries and has raised concerns that salmon reared in hatcheries may spread BKD to natural populations. In order to monitor the potential spread of this disease to salmon spawning in nature, a method must be available to collect and analyze tissues from naturally spawning salmon. Kidney tissue analyzed by enzyme-linked immunosorbent assay (ELISA) is the standard method to detect the presence of Rs in salmon sampled in hatcheries. In this study, we tested the validity of using ELISA on kidney tissue collected from intact carcasses recovered on the spawning grounds to monitor BKD in naturally spawning populations by comparing ELISA optical density (OD) values from kidney tissue that was subjected to conditions that simulated decomposition in a carcass and collection during a spawning ground survey with samples freshly collected from salmon at a hatchery. Mean ELISA OD levels were 1.060 for the samples prepared by the normal preparation and 1.115 for samples prepared by simulating spawning ground survey collection. There was no significant difference in mean ELISA OD between the 2 sample preparations and the relationship did not significantly differ from 1:1 (slope = 0.946). This demonstrates that BKD prevalence in natural populations can be monitored using ELISA conducted on samples from intact carcasses recovered on spawning ground surveys. This will be an important tool for monitoring the effect of hatchery supplementation on naturally spawning salmon populations. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon Abstract -- Bacterial kidney disease (BKD) caused by Renibacterium salmoninarum (Rs) is a serious problem among Pacific Northwest salmon hatcheries and has raised concerns that salmon reared in hatcheries may spread BKD to natural populations. In order to monitor the potential spread of this disease to salmon spawning in nature, a method must be available to collect and analyze tissues from naturally spawning salmon. Kidney tissue analyzed by enzyme-linked immunosorbent assay (ELISA) is the standard method to detect the presence of Rs in salmon sampled in hatcheries. In this study, we tested the validity of using ELISA on kidney tissue collected from intact carcasses recovered on the spawning grounds to monitor BKD in naturally spawning populations by comparing ELISA optical density (OD) values from kidney tissue that was subjected to conditions that simulated decomposition in a carcass and collection during a spawning ground survey with samples freshly collected from salmon at a hatchery. Mean ELISA OD levels were 1.060 for the samples prepared by the normal preparation and 1.115 for samples prepared by simulating spawning ground survey collection. There was no significant difference in mean ELISA OD between the 2 sample preparations and the relationship did not significantly differ from 1:1 (slope = 0.946). This demonstrates that BKD prevalence in natural populations can be monitored using ELISA conducted on samples from intact carcasses recovered on spawning ground surveys. This will be an important tool for monitoring the effect of hatchery supplementation on naturally spawning salmon populations. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 2. [Article] Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon - Information Reports 2006

  Abstract -- Bacterial kidney disease (BKD), caused by Renibacterium salmoninarum (Rs), is a serious problem among Pacific Northwest salmon hatcheries, including the concern that salmon reared in hatcheries ...

  Citation × Citation Citation Abstract Copy Title: Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon - Information Reports 2006 Abstract -- Bacterial kidney disease (BKD), caused by Renibacterium salmoninarum (Rs), is a serious problem among Pacific Northwest salmon hatcheries, including the concern that salmon reared in hatcheries may spread BKD to natural populations. In order to monitor the potential spread of this disease to salmon spawning in nature, a method must be available to collect and analyze tissues from naturally spawning salmon. Kidney tissue analyzed by enzyme-linked immunosorbent assay (ELISA) is the standard method to detect the presence of Rs in salmon sampled in hatcheries. We tested the ability to use ELISA on kidney tissue collected from intact carcasses recovered on the spawning grounds to monitor BKD in naturally spawning populations. We compared ELISA optical density (OD) values from kidney tissue that was subjected to simulated conditions to which kidney tissue would be exposed in a decomposing carcass and following collection during a spawning ground survey versus samples collected from freshly killed salmon at a hatchery. Mean ELISA OD levels were 1.060 for the samples prepared by the normal preparation and 1.115 for samples prepared by simulating spawning ground survey collection. We found no significant difference in mean ELISA optical density between the sample preparations and the relationship between them was nearly 1:1 (slope = 0.946). This demonstrates that BKD prevalence in natural populations can be monitored using ELISA conducted on samples from intact carcasses on spawning ground surveys. This will be an important tool for monitoring the effect of hatchery supplementation on naturally spawning salmon populations. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Use of ELISA to Monitor Bacterial Kidney Disease in Naturally Spawning Chinook Salmon - Information Reports 2006 Abstract -- Bacterial kidney disease (BKD), caused by Renibacterium salmoninarum (Rs), is a serious problem among Pacific Northwest salmon hatcheries, including the concern that salmon reared in hatcheries may spread BKD to natural populations. In order to monitor the potential spread of this disease to salmon spawning in nature, a method must be available to collect and analyze tissues from naturally spawning salmon. Kidney tissue analyzed by enzyme-linked immunosorbent assay (ELISA) is the standard method to detect the presence of Rs in salmon sampled in hatcheries. We tested the ability to use ELISA on kidney tissue collected from intact carcasses recovered on the spawning grounds to monitor BKD in naturally spawning populations. We compared ELISA optical density (OD) values from kidney tissue that was subjected to simulated conditions to which kidney tissue would be exposed in a decomposing carcass and following collection during a spawning ground survey versus samples collected from freshly killed salmon at a hatchery. Mean ELISA OD levels were 1.060 for the samples prepared by the normal preparation and 1.115 for samples prepared by simulating spawning ground survey collection. We found no significant difference in mean ELISA optical density between the sample preparations and the relationship between them was nearly 1:1 (slope = 0.946). This demonstrates that BKD prevalence in natural populations can be monitored using ELISA conducted on samples from intact carcasses on spawning ground surveys. This will be an important tool for monitoring the effect of hatchery supplementation on naturally spawning salmon populations. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 3. [Article] Pine Creek and Catherine Creek Bull Trout Surveys - 2011

  Abstract -- Spawning ground index surveys for bull trout in the Pine Creek Basin (Baker County) and the Grande Ronde Basin (Catherine Creek)

  Citation × Citation Citation Abstract Copy Title: Pine Creek and Catherine Creek Bull Trout Surveys - 2011 Abstract -- Spawning ground index surveys for bull trout in the Pine Creek Basin (Baker County) and the Grande Ronde Basin (Catherine Creek) Title: Pine Creek and Catherine Creek Bull Trout Surveys - 2011 Abstract -- Spawning ground index surveys for bull trout in the Pine Creek Basin (Baker County) and the Grande Ronde Basin (Catherine Creek) Close

• 4. [Article] Run Timing, Spawn Timing, and Spawning Distribution of Hatchery- and Natural-Origin Spring Chinook Salmon in the Imnaha River, Oregon

  Abstract -- We evaluated 16 years (1990-2005) of weir collection and spawning ground survey data to examine differences in run timing, spawn timing, and spawning distribution between naturally and hatchery-reared ...

  Citation × Citation Citation Abstract Copy Title: Run Timing, Spawn Timing, and Spawning Distribution of Hatchery- and Natural-Origin Spring Chinook Salmon in the Imnaha River, Oregon Abstract -- We evaluated 16 years (1990-2005) of weir collection and spawning ground survey data to examine differences in run timing, spawn timing, and spawning distribution between naturally and hatchery-reared Chinook salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon, and to look for changes in these variables over time. We compared run timing based on arrival time at the weir and found that naturally reared Chinook salmon arrived earlier than hatchery-reared fish in all 16 years. Carcasses of naturally reared fish of either or both sexes were recovered on the spawning grounds earlier than carcasses of hatchery-reared fish for all years combined and during 5 of 16 years, indicating earlier spawning by naturally reared fish. We compared spawning distribution using the percent of female carcasses recovered in each spawning ground survey reach. The percent recovery of the carcasses of naturally reared females was greater in reaches above the weir than below the weir and these carcasses were farther upstream than those of hatchery-reared females. For females of hatchery origin, carcasses were more commonly found in reaches closer to and below the weir (the smolt release location). Alternate management strategies designed to improve the maintenance of genetic integrity and life history characteristics of the Imnaha River Chinook salmon population should be considered, implemented, and evaluated. Collection strategies should be modified to ensure that the hatchery broodstock is representative of the entire natural run, and release strategies should be developed to promote a spawning distribution of hatchery adults that mimics the distribution of natural imnaha Chinook salmon. Eastern Oregon Fish Research (EOFR) Title: Run Timing, Spawn Timing, and Spawning Distribution of Hatchery- and Natural-Origin Spring Chinook Salmon in the Imnaha River, Oregon Abstract -- We evaluated 16 years (1990-2005) of weir collection and spawning ground survey data to examine differences in run timing, spawn timing, and spawning distribution between naturally and hatchery-reared Chinook salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon, and to look for changes in these variables over time. We compared run timing based on arrival time at the weir and found that naturally reared Chinook salmon arrived earlier than hatchery-reared fish in all 16 years. Carcasses of naturally reared fish of either or both sexes were recovered on the spawning grounds earlier than carcasses of hatchery-reared fish for all years combined and during 5 of 16 years, indicating earlier spawning by naturally reared fish. We compared spawning distribution using the percent of female carcasses recovered in each spawning ground survey reach. The percent recovery of the carcasses of naturally reared females was greater in reaches above the weir than below the weir and these carcasses were farther upstream than those of hatchery-reared females. For females of hatchery origin, carcasses were more commonly found in reaches closer to and below the weir (the smolt release location). Alternate management strategies designed to improve the maintenance of genetic integrity and life history characteristics of the Imnaha River Chinook salmon population should be considered, implemented, and evaluated. Collection strategies should be modified to ensure that the hatchery broodstock is representative of the entire natural run, and release strategies should be developed to promote a spawning distribution of hatchery adults that mimics the distribution of natural imnaha Chinook salmon. Eastern Oregon Fish Research (EOFR) Close

• 5. [Article] A Comparison of Run Timing, Spawn Timing and Spawning Distribution of Natural and Hatchery Spring Chinook Salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon - Information Reports 2005-03

  Abstract -- We compared fourteen years (1990-2003) of weir collection and spawning ground survey data to examine differences in run timing, spawning distribution and spawn timing between adult natural ...

  Citation × Citation Citation Abstract Copy Title: A Comparison of Run Timing, Spawn Timing and Spawning Distribution of Natural and Hatchery Spring Chinook Salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon - Information Reports 2005-03 Abstract -- We compared fourteen years (1990-2003) of weir collection and spawning ground survey data to examine differences in run timing, spawning distribution and spawn timing between adult natural and hatchery-reared Chinook salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon. We compared run timing using arrival time at the weir and found that natural salmon arrived earlier than hatchery salmon in 12 of 14 years. Natural carcasses, of either or both sexes, were recovered earlier than hatchery carcasses for all years combined and during 6 of 14 years, indicating earlier spawning by natural salmon. We compared spawning distribution using the percent of female carcasses recovered in each spawning ground survey reach. A greater percent of natural female carcasses were recovered in reaches above the weir and further upstream than carcasses of hatchery-reared females, which were more commonly found in reaches closer to and below the weir. Management strategies designed to maintain the genetic integrity and life history characteristics of the Imnaha River Chinook salmon should be considered, implemented and evaluated. Collected broodstock should mimic the wild run and spawn timing. Release strategies should be developed to promote a broader spatial spawning distribution of returning hatchery adults. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: A Comparison of Run Timing, Spawn Timing and Spawning Distribution of Natural and Hatchery Spring Chinook Salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon - Information Reports 2005-03 Abstract -- We compared fourteen years (1990-2003) of weir collection and spawning ground survey data to examine differences in run timing, spawning distribution and spawn timing between adult natural and hatchery-reared Chinook salmon Oncorhynchus tshawytscha in the Imnaha River, Oregon. We compared run timing using arrival time at the weir and found that natural salmon arrived earlier than hatchery salmon in 12 of 14 years. Natural carcasses, of either or both sexes, were recovered earlier than hatchery carcasses for all years combined and during 6 of 14 years, indicating earlier spawning by natural salmon. We compared spawning distribution using the percent of female carcasses recovered in each spawning ground survey reach. A greater percent of natural female carcasses were recovered in reaches above the weir and further upstream than carcasses of hatchery-reared females, which were more commonly found in reaches closer to and below the weir. Management strategies designed to maintain the genetic integrity and life history characteristics of the Imnaha River Chinook salmon should be considered, implemented and evaluated. Collected broodstock should mimic the wild run and spawn timing. Release strategies should be developed to promote a broader spatial spawning distribution of returning hatchery adults. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 6. [Article] Using Calibrated Index Surveys to Estimate Chinook Spawner Escapement into the Salmon River, Oregon Information Report number 2012-01

  Abstract -- The Pacific Salmon Commission has designated the Salmon River hatchery stock of fall Chinook as an Exploitation Rate Indicator Stock (ERIS) for all 16 naturally produced stocks of fall Chinook ...

  Citation × Citation Citation Abstract Copy Title: Using Calibrated Index Surveys to Estimate Chinook Spawner Escapement into the Salmon River, Oregon Information Report number 2012-01 Abstract -- The Pacific Salmon Commission has designated the Salmon River hatchery stock of fall Chinook as an Exploitation Rate Indicator Stock (ERIS) for all 16 naturally produced stocks of fall Chinook on Oregon’s north coast. The Pacific Salmon Treaty (PST) specifies the necessity of these stocks to model the effects of mixed stock fisheries on wild Chinook salmon. The ocean migration patterns and catch rates of this stock are thought to closely resemble Oregon’s north migrating Chinook from coastal basins ranging from the Necanicum River in the north to the Siuslaw River in the south. A relatively long and continuous history of mark and recapture experiments with corresponding extensive spawning ground surveys and harvest estimates from a fresh water creel, serves as the foundation for a predictive model of spawner abundance. Peak counts from two spawning ground surveys were identified as an index that strongly correlates with relatively precise abundance estimates derived from a Peterson two event mark-recapture model. Index surveys are less labor intensive than previous mark-recapture activities, and evidence suggests they are an efficient and cost effective method to estimate spawner abundance. Title: Using Calibrated Index Surveys to Estimate Chinook Spawner Escapement into the Salmon River, Oregon Information Report number 2012-01 Abstract -- The Pacific Salmon Commission has designated the Salmon River hatchery stock of fall Chinook as an Exploitation Rate Indicator Stock (ERIS) for all 16 naturally produced stocks of fall Chinook on Oregon’s north coast. The Pacific Salmon Treaty (PST) specifies the necessity of these stocks to model the effects of mixed stock fisheries on wild Chinook salmon. The ocean migration patterns and catch rates of this stock are thought to closely resemble Oregon’s north migrating Chinook from coastal basins ranging from the Necanicum River in the north to the Siuslaw River in the south. A relatively long and continuous history of mark and recapture experiments with corresponding extensive spawning ground surveys and harvest estimates from a fresh water creel, serves as the foundation for a predictive model of spawner abundance. Peak counts from two spawning ground surveys were identified as an index that strongly correlates with relatively precise abundance estimates derived from a Peterson two event mark-recapture model. Index surveys are less labor intensive than previous mark-recapture activities, and evidence suggests they are an efficient and cost effective method to estimate spawner abundance. Close

• 7. [Article] Salmonberry River Steelhead Spawning Surveys

  Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP ...

  Citation × Citation Citation Abstract Copy Title: Salmonberry River Steelhead Spawning Surveys Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP Report-Salmonberry Spawning Surveys". For convenience and further long-term context, the data also include ODFW peak counts since 1973, based on Streamnet data (1973-1992) and personal communication from Walt Weber (1993 and later) Title: Salmonberry River Steelhead Spawning Surveys Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP Report-Salmonberry Spawning Surveys". For convenience and further long-term context, the data also include ODFW peak counts since 1973, based on Streamnet data (1973-1992) and personal communication from Walt Weber (1993 and later) Close

• 8. [Article] Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009

  Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests ...

  Citation × Citation Citation Abstract Copy Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 9. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Grande Ronde and Imnaha river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1997 and 1998 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 1999 return of adult Chinook salmon, and the collection of eggs for the 1999 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Grande Ronde and Imnaha river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1997 and 1998 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 1999 return of adult Chinook salmon, and the collection of eggs for the 1999 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 10. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate salmon culture performance and achievement of management objectives for spring Chinook salmon hatchery programs in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1998 and 1999 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2000 return of adult Chinook salmon, and the collection of eggs for the 2000 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate salmon culture performance and achievement of management objectives for spring Chinook salmon hatchery programs in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1998 and 1999 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2000 return of adult Chinook salmon, and the collection of eggs for the 2000 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 11. [Article] Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin

  Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal ...

  Citation × Citation Citation Abstract Copy Title: Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal mitigation obligations. The goal of this project was to provide information on spawning distribution of winter steelhead above and below Foster Dam considering the influence of upstream fish passage and outplanting procedures. Data were collected by conducting spawning ground surveys throughout the South Santiam subbasin using a spatially-balanced design during the 2015/2016 and 2016/2017 spawning seasons. During the 2016/2017 season additional surveys were conducted explicitly to determine the amount of overlap between winter-run and non-native, hatchery summer-run steelhead on the spawning grounds. Generally, both summer- and winter-run steelhead spawned in the upper reaches of streams and near Foster Dam. There was a six-week separation between the end of summer-run spawning and the onset of winter-run spawning. Outplanting methods for both runs have been consistent since at least 2006 and we found no evidence of negative impacts of the program on prespawn mortality. The spatiallybalanced survey design resulted in a threefold increase in miles surveyed compared to traditional index surveys and provided information regarding the distribution of spawning activity in the South Santiam subbasin that was lacking. The South Santiam River does not have any fish counting stations and, other than fish volitionally entering the trap at Foster Dam, there is no way to know how many fish enter the subbasin. Continued spawning ground surveys, a video monitoring system at Lebanon Dam, or both are needed to monitor these ESA-listed fish in the subbasin and evaluate the possible negative effects of the hatchery program and outplanting procedures. Title: Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal mitigation obligations. The goal of this project was to provide information on spawning distribution of winter steelhead above and below Foster Dam considering the influence of upstream fish passage and outplanting procedures. Data were collected by conducting spawning ground surveys throughout the South Santiam subbasin using a spatially-balanced design during the 2015/2016 and 2016/2017 spawning seasons. During the 2016/2017 season additional surveys were conducted explicitly to determine the amount of overlap between winter-run and non-native, hatchery summer-run steelhead on the spawning grounds. Generally, both summer- and winter-run steelhead spawned in the upper reaches of streams and near Foster Dam. There was a six-week separation between the end of summer-run spawning and the onset of winter-run spawning. Outplanting methods for both runs have been consistent since at least 2006 and we found no evidence of negative impacts of the program on prespawn mortality. The spatiallybalanced survey design resulted in a threefold increase in miles surveyed compared to traditional index surveys and provided information regarding the distribution of spawning activity in the South Santiam subbasin that was lacking. The South Santiam River does not have any fish counting stations and, other than fish volitionally entering the trap at Foster Dam, there is no way to know how many fish enter the subbasin. Continued spawning ground surveys, a video monitoring system at Lebanon Dam, or both are needed to monitor these ESA-listed fish in the subbasin and evaluate the possible negative effects of the hatchery program and outplanting procedures. Close

• 12. [Article] Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit

  Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships ...

  Citation × Citation Citation Abstract Copy Title: Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships we linked multi-year data sets of overwinter survival rates from three streams within the Oregon Coast Coho Evolutionarily Significant Unit (OCC) to summer parr abundance estimates from calibrated OCC-wide snorkel survey counts to estimate annual Coho Salmon smolt abundance from 2000-2017. Smolt abundance estimates ranged from a low of 0.9 million in 2000 to a high of 4.1 million in 2013 within the OCC. Accuracy of the smolt abundance estimates was tested using two datasets: (i) adult abundance modeled from the corresponding smolt abundance estimate was compared with adult abundance derived empirically from spawning ground surveys and (ii) our smolt abundance estimates were compared with smolt abundance estimates from trapping efforts in select basins within the OCC. Adult abundance modeled from smolt abundance estimates was highly correlated with adult abundance from spawning ground surveys (r = 0.88, p < 0.001) and smolt abundance estimates correlated with abundance from smolt trapping efforts (r = 0.81, p <0.001). Graphical relationships between smolt abundance and parental abundance suggest that freshwater productivity may be limited in the OCC by density dependent processes at spawner levels observed since 1998. Additionally, smolt abundance estimates have potential use as a variable in adult forecast models and could be used to assess trends in freshwater productivity and to probe factors of density dependence. Title: Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships we linked multi-year data sets of overwinter survival rates from three streams within the Oregon Coast Coho Evolutionarily Significant Unit (OCC) to summer parr abundance estimates from calibrated OCC-wide snorkel survey counts to estimate annual Coho Salmon smolt abundance from 2000-2017. Smolt abundance estimates ranged from a low of 0.9 million in 2000 to a high of 4.1 million in 2013 within the OCC. Accuracy of the smolt abundance estimates was tested using two datasets: (i) adult abundance modeled from the corresponding smolt abundance estimate was compared with adult abundance derived empirically from spawning ground surveys and (ii) our smolt abundance estimates were compared with smolt abundance estimates from trapping efforts in select basins within the OCC. Adult abundance modeled from smolt abundance estimates was highly correlated with adult abundance from spawning ground surveys (r = 0.88, p < 0.001) and smolt abundance estimates correlated with abundance from smolt trapping efforts (r = 0.81, p <0.001). Graphical relationships between smolt abundance and parental abundance suggest that freshwater productivity may be limited in the OCC by density dependent processes at spawner levels observed since 1998. Additionally, smolt abundance estimates have potential use as a variable in adult forecast models and could be used to assess trends in freshwater productivity and to probe factors of density dependence. Close

• 13. [Article] Development of Methods to Estimate Spawning Escapement of Spring Chinook in the John Day, Grande Ronde and Imnaha River Basins of Northeast Oregon; 1989 Summary Report

  Abstract -- The Confederated Tribes of the umatilla Indian Reservation (CTUIR), in conjunction with the Oregon Department of Fish and Wildlife (ODFW) , and Nez Perce Tribe (NPT), conducted comprehensive spawning ...

  Citation × Citation Citation Abstract Copy Title: Development of Methods to Estimate Spawning Escapement of Spring Chinook in the John Day, Grande Ronde and Imnaha River Basins of Northeast Oregon; 1989 Summary Report Abstract -- The Confederated Tribes of the umatilla Indian Reservation (CTUIR), in conjunction with the Oregon Department of Fish and Wildlife (ODFW) , and Nez Perce Tribe (NPT), conducted comprehensive spawning ground surveys for spring chinook salmon (Oncorhynchus tshawytscha) in the John Day, Grande Ronde, and Imnaha River basins in 1989. These surveys represent the fourth year of the US/Canada Pacific Salmon Treaty Monitoring Program implemented in 1986 by tribal, state and federal fishery agencies. The Pacific Salmon Treaty directs fishery management entities to conserve and rebuild chinook salmon stocks originating from the Columbia River Basin by appropriate ocean and in-river harvest controls. In order to monitor the success of the Pacific Salmon Treaty, annual spawner escapement of chinook salmon "indicator" stocks must be determined. The spring chinook salmon stocks of the John Day, Grande Ronde, and Imnaha River basins have been identified as potential indicator stocks for monitoring. These drainages were selected because of the unique wild salmon chinook stock in John Day River and wild stock component of spring chinook runs in the Grande Ronde and Imnaha Rivers. In addition, base line data have been established because ODFW has conducted spring chinook salmon spawning ground surveys in these basins since 1960. The comprehensive and multiple index surveys completed in 1989 were developed to collect information which could provide an estimate of spawner escapement and be comparable to historic redd survey data. In addition to spawning ground surveys, a new method was implemented to estimate spawning escapement. In 1989, snorkel and foot surveys were conducted in the Middle Fork John Day River to enumerate spring chinook salmon holding prior to spawning. The Middle Fork of John Day River was selected as the study site because 1) the holding and spawning area is only 30 miles long (the entire 30 miles could be sampled within one week) 2) the 30 mile section has good access by road and 3) the 30 mile section is generally narrow and shallow. Snorkeling and foot surveys were chosen as the method because 1) there are no weirs on the John Day River to count fish 2) snorkeling is a low-impact method and 3) other studies have shown snorkeling to be both time and cost effective with good success for estimating fish population size (Northcote and Wilkie (1963); Zubik and Frayley (1988)). Title: Development of Methods to Estimate Spawning Escapement of Spring Chinook in the John Day, Grande Ronde and Imnaha River Basins of Northeast Oregon; 1989 Summary Report Abstract -- The Confederated Tribes of the umatilla Indian Reservation (CTUIR), in conjunction with the Oregon Department of Fish and Wildlife (ODFW) , and Nez Perce Tribe (NPT), conducted comprehensive spawning ground surveys for spring chinook salmon (Oncorhynchus tshawytscha) in the John Day, Grande Ronde, and Imnaha River basins in 1989. These surveys represent the fourth year of the US/Canada Pacific Salmon Treaty Monitoring Program implemented in 1986 by tribal, state and federal fishery agencies. The Pacific Salmon Treaty directs fishery management entities to conserve and rebuild chinook salmon stocks originating from the Columbia River Basin by appropriate ocean and in-river harvest controls. In order to monitor the success of the Pacific Salmon Treaty, annual spawner escapement of chinook salmon "indicator" stocks must be determined. The spring chinook salmon stocks of the John Day, Grande Ronde, and Imnaha River basins have been identified as potential indicator stocks for monitoring. These drainages were selected because of the unique wild salmon chinook stock in John Day River and wild stock component of spring chinook runs in the Grande Ronde and Imnaha Rivers. In addition, base line data have been established because ODFW has conducted spring chinook salmon spawning ground surveys in these basins since 1960. The comprehensive and multiple index surveys completed in 1989 were developed to collect information which could provide an estimate of spawner escapement and be comparable to historic redd survey data. In addition to spawning ground surveys, a new method was implemented to estimate spawning escapement. In 1989, snorkel and foot surveys were conducted in the Middle Fork John Day River to enumerate spring chinook salmon holding prior to spawning. The Middle Fork of John Day River was selected as the study site because 1) the holding and spawning area is only 30 miles long (the entire 30 miles could be sampled within one week) 2) the 30 mile section has good access by road and 3) the 30 mile section is generally narrow and shallow. Snorkeling and foot surveys were chosen as the method because 1) there are no weirs on the John Day River to count fish 2) snorkeling is a low-impact method and 3) other studies have shown snorkeling to be both time and cost effective with good success for estimating fish population size (Northcote and Wilkie (1963); Zubik and Frayley (1988)). Close

• 14. [Article] Survey of the Waters of South Umpqua Ranger District, Umpqua National Forest, 1937

  Abstract -- The objectives of the present survey of the upper waters of the South Fork of the Umpqua River were to: (1) develop practical and scientifically sound stocking policies; (2) determine the need ...

  Citation × Citation Citation Abstract Copy Title: Survey of the Waters of South Umpqua Ranger District, Umpqua National Forest, 1937 Abstract -- The objectives of the present survey of the upper waters of the South Fork of the Umpqua River were to: (1) develop practical and scientifically sound stocking policies; (2) determine the need for stream and lake improvements; and (3) obtain facts to assist in the settlement of the controversy with regard to the South Umpqua Falls. There has been continual demand by sportsmen that the South Umpqua Falls be supplied with fish ladders to permit safe ascent of sea-run species to spawning grounds above the falls. Study of this problem was undertaken as a definite part of the survey work described herein. The stream run and lake survey work was initiated by the Forest Service in cooperation with the U.S. Bureau of Fisheries during the summer of 1937. Emphasis was placed on the detailed studies relating to the physical and biological factors upon which it would be possible to recommend adequate stocking policies. No study of chemical conditions whatsoever was made for two reasons, first, lack of equipment prevented making gas analyses and, second, such studies seemed unnecessary by reason of the fact that there is no pollution present in the streams surveyed and all of them are well aerated, clean, rapid flowing mountain streams. Chemical conditions as shown by general observations were quite suitable and it is only whore natural or artificial pollutants occur in great abundance that chemical analyses would aid in determining tho basic effects of some of those fishes and their food organisms present in streams. Title: Survey of the Waters of South Umpqua Ranger District, Umpqua National Forest, 1937 Abstract -- The objectives of the present survey of the upper waters of the South Fork of the Umpqua River were to: (1) develop practical and scientifically sound stocking policies; (2) determine the need for stream and lake improvements; and (3) obtain facts to assist in the settlement of the controversy with regard to the South Umpqua Falls. There has been continual demand by sportsmen that the South Umpqua Falls be supplied with fish ladders to permit safe ascent of sea-run species to spawning grounds above the falls. Study of this problem was undertaken as a definite part of the survey work described herein. The stream run and lake survey work was initiated by the Forest Service in cooperation with the U.S. Bureau of Fisheries during the summer of 1937. Emphasis was placed on the detailed studies relating to the physical and biological factors upon which it would be possible to recommend adequate stocking policies. No study of chemical conditions whatsoever was made for two reasons, first, lack of equipment prevented making gas analyses and, second, such studies seemed unnecessary by reason of the fact that there is no pollution present in the streams surveyed and all of them are well aerated, clean, rapid flowing mountain streams. Chemical conditions as shown by general observations were quite suitable and it is only whore natural or artificial pollutants occur in great abundance that chemical analyses would aid in determining tho basic effects of some of those fishes and their food organisms present in streams. Close

• 15. [Article] Willamette Biological Opinion Hatchery Research 2008 Interim Activities Report

  Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2008 Interim Activities Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, by providing a genetic reserve as well as providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring Chinook within the Upper Willamette River ESU. ODFW submits this report in fulfillment of Task Order NWPOD-08-FH-05 (per Task 3). This report covers activities of July 2008–May 2009 that were implemented by ODFW on behalf of the Corps to assist with meeting the requirements of the reasonable and prudent alternatives and measures prescribed in the Willamette Project Biological Opinion (BiOp) of July 2008 (NOAA 2008). Although a strategy to implement actions identified on the BiOp has not yet been completed, the Corps provided interim funding to continue certain monitoring activities and initiate long-term planning as detailed below: Task 1 (a–f). Monitor straying of hatchery fish on natural spawning grounds in the North Santiam, South Santiam, McKenzie, and Middle Fork Willamette rivers to determine the distribution, abundance and proportion of hatchery and natural-origin fish spawning by: (1) conducting spawning ground surveys downstream of projects and upstream of Detroit and Foster reservoirs; (2) conducting re-surveys to assess variability in redd counts among crews; (3) estimating pre-spawning mortality; (4) estimating the percentage of hatchery-origin spawners using otolith analysis; (5) monitoring fin-clipped and unclipped fish passing Leaburg and upper Bennett dams. Task 2 (a–c). Monitor fin-clipped and unclipped fish entering hatcheries and collection facilities (i.e., record number, origin, length, date of return); determine origin using otolith analysis; collect tissue samples for genetic analysis. Task 4. Work with Corps and/or contractors to develop coordinated monitoring plan for Corps-funded hatchery programs based on requirements in the 2008 BiOp. Title: Willamette Biological Opinion Hatchery Research 2008 Interim Activities Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, by providing a genetic reserve as well as providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring Chinook within the Upper Willamette River ESU. ODFW submits this report in fulfillment of Task Order NWPOD-08-FH-05 (per Task 3). This report covers activities of July 2008–May 2009 that were implemented by ODFW on behalf of the Corps to assist with meeting the requirements of the reasonable and prudent alternatives and measures prescribed in the Willamette Project Biological Opinion (BiOp) of July 2008 (NOAA 2008). Although a strategy to implement actions identified on the BiOp has not yet been completed, the Corps provided interim funding to continue certain monitoring activities and initiate long-term planning as detailed below: Task 1 (a–f). Monitor straying of hatchery fish on natural spawning grounds in the North Santiam, South Santiam, McKenzie, and Middle Fork Willamette rivers to determine the distribution, abundance and proportion of hatchery and natural-origin fish spawning by: (1) conducting spawning ground surveys downstream of projects and upstream of Detroit and Foster reservoirs; (2) conducting re-surveys to assess variability in redd counts among crews; (3) estimating pre-spawning mortality; (4) estimating the percentage of hatchery-origin spawners using otolith analysis; (5) monitoring fin-clipped and unclipped fish passing Leaburg and upper Bennett dams. Task 2 (a–c). Monitor fin-clipped and unclipped fish entering hatcheries and collection facilities (i.e., record number, origin, length, date of return); determine origin using otolith analysis; collect tissue samples for genetic analysis. Task 4. Work with Corps and/or contractors to develop coordinated monitoring plan for Corps-funded hatchery programs based on requirements in the 2008 BiOp. Close

• 16. [Article] Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature Information Reports number 2009-06

  Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests ...

  Citation × Citation Citation Abstract Copy Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature Information Reports number 2009-06 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Mean ELISA OD levels differed among all sampled streams from 2004-2008 and was lowest in the Imnaha River salmon (0.0839) and highest in the Minam River (0.1750). Salmon spawned at LFH had a lower mean ELISA OD level (0.086) than those collected from carcasses on spawning ground surveys (0.118). Natural salmon mean ELISA OD level was 0.1058 and 97% were from salmon with ELISA OD level <0.2 and in hatchery salmon, 96% had an ELISA OD level <0.2 and mean ELISA OD level was 0.1138, with no difference between the groups. Over 17 years in the Imnaha River we see no difference in mean ELISA OD levels between natural and hatchery Chinook salmon. There was no difference in mean ELISA OD levels between adult Chinook salmon from wilderness (0.1663) vs. supplemented (0.1184) streams. However, when comparing mean ELISA OD for only natural Chinook salmon carcasses recovered in these streams, we found that mean ELISA OD level was higher in the wilderness streams (0.1676) than in the supplemented streams. Returning adults from the Captive Broodstock F1 generation had a higher mean ELISA OD level (0.1349) than those of Conventional Hatchery Program offspring (0.0957). Annual mean ELISA OD level decreased over time in the Lostine River stock but did not change for any of the other stocks. The data for BKD in Chinook salmon from northeast Oregon streams and hatcheries show that this disease is not prevalent and we found no evidence that the release of hatchery salmon is causing an increase in BKD prevalence in the monitored streams. However, we will continue to monitor this disease. Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature Information Reports number 2009-06 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Mean ELISA OD levels differed among all sampled streams from 2004-2008 and was lowest in the Imnaha River salmon (0.0839) and highest in the Minam River (0.1750). Salmon spawned at LFH had a lower mean ELISA OD level (0.086) than those collected from carcasses on spawning ground surveys (0.118). Natural salmon mean ELISA OD level was 0.1058 and 97% were from salmon with ELISA OD level <0.2 and in hatchery salmon, 96% had an ELISA OD level <0.2 and mean ELISA OD level was 0.1138, with no difference between the groups. Over 17 years in the Imnaha River we see no difference in mean ELISA OD levels between natural and hatchery Chinook salmon. There was no difference in mean ELISA OD levels between adult Chinook salmon from wilderness (0.1663) vs. supplemented (0.1184) streams. However, when comparing mean ELISA OD for only natural Chinook salmon carcasses recovered in these streams, we found that mean ELISA OD level was higher in the wilderness streams (0.1676) than in the supplemented streams. Returning adults from the Captive Broodstock F1 generation had a higher mean ELISA OD level (0.1349) than those of Conventional Hatchery Program offspring (0.0957). Annual mean ELISA OD level decreased over time in the Lostine River stock but did not change for any of the other stocks. The data for BKD in Chinook salmon from northeast Oregon streams and hatcheries show that this disease is not prevalent and we found no evidence that the release of hatchery salmon is causing an increase in BKD prevalence in the monitored streams. However, we will continue to monitor this disease. Close

• 17. [Article] Lower Snake River Compensation Plan; Oregon Evaluation Studies - 1995 and 1996 Annual Progress Report

  Abstract -- This report summarizes fish culture monitoring data for Lower Snake River Compensation Plan (LSRCP) facilities for each species. These data should serve as the basis for the analysis of trends ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Evaluation Studies - 1995 and 1996 Annual Progress Report Abstract -- This report summarizes fish culture monitoring data for Lower Snake River Compensation Plan (LSRCP) facilities for each species. These data should serve as the basis for the analysis of trends in culture performance. Generally speaking, the data in this report were derived from hatchery inventories and standard databases (i.e., PSMFC, Coded-wire tag) or through standard measuring techniques. As such, specific protocols are usually not described. In cases where expansions of data or unique methodologies were used, protocols are described in more detail. Additional descriptions of protocols can be found in the 1995 and 1996 work statements (Carmichael 1995, 1996). Coded-wire tag (CWT) data that were collected from 1995-1996 adult returns is used to evaluate smolt-to-adult survival rates in experimental rearing and release groups. In 1995-1996, experimental treatments from which fish returned included acclimated vs. direct stream for steelhead and size-at-release for both steelhead and Chinook. In 1995-1996, experimental treatments for which fish were released included size-at-release, exercise, acclimation, and low density treatments for Chinook, acclimated vs. direct stream for both steelhead and Chinook, and forced vs. volitional release for steelhead. Analysis of specific survival studies will be completed once all brood years have returned and CWT data are complete for a given experiment. In addition, much of the data that we discuss in this report will be used in separate and specific evaluations of ongoing supplementation programs for both steelhead and Chinook in the Imnaha River basin. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Evaluation Studies - 1995 and 1996 Annual Progress Report Abstract -- This report summarizes fish culture monitoring data for Lower Snake River Compensation Plan (LSRCP) facilities for each species. These data should serve as the basis for the analysis of trends in culture performance. Generally speaking, the data in this report were derived from hatchery inventories and standard databases (i.e., PSMFC, Coded-wire tag) or through standard measuring techniques. As such, specific protocols are usually not described. In cases where expansions of data or unique methodologies were used, protocols are described in more detail. Additional descriptions of protocols can be found in the 1995 and 1996 work statements (Carmichael 1995, 1996). Coded-wire tag (CWT) data that were collected from 1995-1996 adult returns is used to evaluate smolt-to-adult survival rates in experimental rearing and release groups. In 1995-1996, experimental treatments from which fish returned included acclimated vs. direct stream for steelhead and size-at-release for both steelhead and Chinook. In 1995-1996, experimental treatments for which fish were released included size-at-release, exercise, acclimation, and low density treatments for Chinook, acclimated vs. direct stream for both steelhead and Chinook, and forced vs. volitional release for steelhead. Analysis of specific survival studies will be completed once all brood years have returned and CWT data are complete for a given experiment. In addition, much of the data that we discuss in this report will be used in separate and specific evaluations of ongoing supplementation programs for both steelhead and Chinook in the Imnaha River basin. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 18. [Article] A Compendium of Grande Ronde River and Imnaha River Basins Spring Chinook Salmon Spawning Ground Surveys Conducted from 1948 through 2003

  Abstract -- A variety of methods have been used to estimate the number of spring/summer Chinook salmon returning to spawn in Northeast Oregon streams. However, little quantitative information has been ...

  Citation × Citation Citation Abstract Copy Title: A Compendium of Grande Ronde River and Imnaha River Basins Spring Chinook Salmon Spawning Ground Surveys Conducted from 1948 through 2003 Abstract -- A variety of methods have been used to estimate the number of spring/summer Chinook salmon returning to spawn in Northeast Oregon streams. However, little quantitative information has been available to fisheries biologists and studies to quantify total annual escapement have not been conducted. Techniques used to estimate spawning escapement were often not documented (Van Cleave and Ting 1960, Oregon Fish Commission, unpublished data; Smith 1975). While other estimates have formed the basis for compensating losses due to the construction of the lower Snake River dams and setting subbasin supplementation goals, the accuracy of these estimates is unknown (USACE 1975, Carmichael and Boyce 1987, ODFW 1990). As populations continue to decline, accurate historic and current escapement estimates are needed to set management goals for conservation, recovery, supplementation, harvest, and to monitor population health. Spawning populations of spring/summer Chinook salmon have been monitored in Northeast Oregon streams since 1948 by visually counting redds. The Oregon Fish Commission established early surveys and in 1961 the Oregon Game Commission also began surveys. The two agencies were merged into the Oregon Department of Fish and Wildlife in 1975. In the past, time and budget limitations prevented fishery biologists from surveying entire streams. Redd counts, therefore, were limited to only a portion of the available spawning habitat on each stream termed the “index” area. The index area was chosen as the area most likely to provide a good sample (represent majority of spawning) of spawning escapement for a given stream. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: A Compendium of Grande Ronde River and Imnaha River Basins Spring Chinook Salmon Spawning Ground Surveys Conducted from 1948 through 2003 Abstract -- A variety of methods have been used to estimate the number of spring/summer Chinook salmon returning to spawn in Northeast Oregon streams. However, little quantitative information has been available to fisheries biologists and studies to quantify total annual escapement have not been conducted. Techniques used to estimate spawning escapement were often not documented (Van Cleave and Ting 1960, Oregon Fish Commission, unpublished data; Smith 1975). While other estimates have formed the basis for compensating losses due to the construction of the lower Snake River dams and setting subbasin supplementation goals, the accuracy of these estimates is unknown (USACE 1975, Carmichael and Boyce 1987, ODFW 1990). As populations continue to decline, accurate historic and current escapement estimates are needed to set management goals for conservation, recovery, supplementation, harvest, and to monitor population health. Spawning populations of spring/summer Chinook salmon have been monitored in Northeast Oregon streams since 1948 by visually counting redds. The Oregon Fish Commission established early surveys and in 1961 the Oregon Game Commission also began surveys. The two agencies were merged into the Oregon Department of Fish and Wildlife in 1975. In the past, time and budget limitations prevented fishery biologists from surveying entire streams. Redd counts, therefore, were limited to only a portion of the available spawning habitat on each stream termed the “index” area. The index area was chosen as the area most likely to provide a good sample (represent majority of spawning) of spawning escapement for a given stream. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 19. [Article] Fish Research Project Oregon; John Day Basin Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2002

  Abstract -- Spring (stream-type) chinook spawning ground surveys were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and three minor spawning areas ...

  Citation × Citation Citation Abstract Copy Title: Fish Research Project Oregon; John Day Basin Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2002 Abstract -- Spring (stream-type) chinook spawning ground surveys were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and three minor spawning areas (South Fork, Camas Creek, Desolation Creek) of the John Day River during September 2001. Included in these surveys were 254.3 river kilometers (rkm; 87.6 rkm index, 91.9 rkm extensive, and 74.8 rkm exploratory) of spawning habitat. Chinook smolts were captured by beach seining while wading and with the aid of a jet boat in the Mainstem John Day River between river kilometers (rkm) 274 and 296 from February 21 to May 15, 2002. Riffles, eddies and river margins were sampled with a seine constructed of 12.7 mm mesh netting that measured 30.5 m long by 2.4 m deep with a 1.2 m x 1.2 m bag constructed of 9.5 mm mesh netting in the middle. Our sampling strategy did not include the use of standard seining sites. Instead, locations for sampling within our river kilometer reaches varied on a daily basis depending on daily discharge and success during previous sampling days. Appendix Table C-1 lists our sampling sites. ODFW, Eastern Oregon Fish Research (EOFR) Title: Fish Research Project Oregon; John Day Basin Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2002 Abstract -- Spring (stream-type) chinook spawning ground surveys were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and three minor spawning areas (South Fork, Camas Creek, Desolation Creek) of the John Day River during September 2001. Included in these surveys were 254.3 river kilometers (rkm; 87.6 rkm index, 91.9 rkm extensive, and 74.8 rkm exploratory) of spawning habitat. Chinook smolts were captured by beach seining while wading and with the aid of a jet boat in the Mainstem John Day River between river kilometers (rkm) 274 and 296 from February 21 to May 15, 2002. Riffles, eddies and river margins were sampled with a seine constructed of 12.7 mm mesh netting that measured 30.5 m long by 2.4 m deep with a 1.2 m x 1.2 m bag constructed of 9.5 mm mesh netting in the middle. Our sampling strategy did not include the use of standard seining sites. Instead, locations for sampling within our river kilometer reaches varied on a daily basis depending on daily discharge and success during previous sampling days. Appendix Table C-1 lists our sampling sites. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 20. [Article] Willamette Biological Opinion Hatchery Research 2002-03 Addendum

  Abstract -- This report is an addendum to the report on activities in 2002 that was generated in December of that year. This report also presents results of spawning surveys and stomach content analysis ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2002-03 Addendum Abstract -- This report is an addendum to the report on activities in 2002 that was generated in December of that year. This report also presents results of spawning surveys and stomach content analysis that were completed in 2003. A complete report for the 2003 survey season will be prepared after the seasons trapping and angler surveys have ended. Title: Willamette Biological Opinion Hatchery Research 2002-03 Addendum Abstract -- This report is an addendum to the report on activities in 2002 that was generated in December of that year. This report also presents results of spawning surveys and stomach content analysis that were completed in 2003. A complete report for the 2003 survey season will be prepared after the seasons trapping and angler surveys have ended. Close

• 21. [Article] Willamette Biological Opinion Hatchery Research 2002 Annual Report

  Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2002 Annual Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects hatchery programs on naturally spawning populations of Spring Chinook and winter Steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Title: Willamette Biological Opinion Hatchery Research 2002 Annual Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects hatchery programs on naturally spawning populations of Spring Chinook and winter Steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Close

• 22. [Article] Willamette Biological Opinion Hatchery Research 2003 Annual Report

  Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2003 Annual Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring chinook and winter steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Title: Willamette Biological Opinion Hatchery Research 2003 Annual Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring chinook and winter steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Close

• 23. [Article] Willamette Biological Opinion Hatchery Research 2007 Interim Activities Report

  Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2007 Interim Activities Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, by providing a genetic reserve as well as providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring Chinook within the Upper Willamette River ESU. The project employs three types of activities to achieve this goal: sampling of returns to hatcheries, monitoring of adult migration through the use video observations, and monitoring natural production through spawning ground surveys. Title: Willamette Biological Opinion Hatchery Research 2007 Interim Activities Report Abstract -- Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation, increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, by providing a genetic reserve as well as providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring Chinook within the Upper Willamette River ESU. The project employs three types of activities to achieve this goal: sampling of returns to hatcheries, monitoring of adult migration through the use video observations, and monitoring natural production through spawning ground surveys. Close

• 24. [Article] Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Report 2000

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Report 2000 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Report 2000 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 25. [Article] Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2001

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2001 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Fish Research Project Oregon; John Day Basin Spring Chinook Salmon Escapement and Productivity Monitoring - Annual Progress Report 2001 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 26. [Article] Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2003

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2003 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2003 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 27. [Article] Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2004

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2004 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Annual Report 2004 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 28. [Article] Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Technical Report 2005

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Technical Report 2005 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Escapement and Productivity of Spring Chinook and Summer Steelhead in the John Day River Basin - Technical Report 2005 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 29. [Article] Escapement and Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2006

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Escapement and Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2006 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Escapement and Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2006 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 30. [Article] Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2007

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2007 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2007 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 31. [Article] Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2008

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2008 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2008 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 32. [Article] Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2009

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2009 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2009 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 33. [Article] Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2010

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2010 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2010 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 34. [Article] Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2011

  Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, ...

  Citation × Citation Citation Abstract Copy Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2011 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Title: Productivity of Spring Chinook Salmon and Summer Steelhead in the John Day River Basin - Annual Technical Report 2011 Abstract -- The John Day River subbasin supports one of the last remaining intact wild populations of spring Chinook salmon and summer steelhead in the Columbia River Basin. These populations, however, remain depressed relative to historic levels. Between the completion of the life history and natural escapement study in 1984 and the start of this project in 1998, spring Chinook spawning surveys did not provide adequate information to assess age structure, progeny-to-parent production values, smolt-to-adult survival (SAR), or natural spawning escapement. Further, only very limited information is available for steelhead life history, escapement, and productivity measures in the John Day subbasin. Numerous habitat protection and rehabilitation projects to improve salmonid freshwater production and survival have also been implemented in the basin and are in need of effectiveness monitoring. While our monitoring efforts outlined here will not specifically measure the effectiveness of any particular project, they will provide much needed background information for developing context for project-specific effectiveness monitoring efforts. To meet the data needs as index stocks, to assess the long-term effectiveness of habitat projects, and to differentiate freshwater and ocean survival, sufficient annual estimates of spawner escapement, age structure, SAR, egg-to-smolt survival, smolt-per-redd ratio, and freshwater habitat use are essential. We have begun to meet this need through spawning ground surveys initiated for spring Chinook salmon in 1998 and smolt PIT-tagging efforts initiated in 1999. Additional sampling and analyses to meet these goals include an estimate of smolt abundance and SAR rates, and an updated measure of the freshwater distribution of critical life stages. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 35. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2007

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2007 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and seven minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek, Clear Creek, and Big Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2007 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and seven minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek, Clear Creek, and Big Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 36. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2008

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2008 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and seven minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek, Clear Creek, and Big Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2008 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and seven minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek, Clear Creek, and Big Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 37. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2009

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2009 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2009 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 38. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2010

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2010 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2010 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at three rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. Two rotary screw traps were located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day River and the South Fork trap located at rkm 10 of the South Fork John Day River. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The third rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 39. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2011

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2011 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2011 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 40. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2012

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2012 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2012 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 41. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2013

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2013 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2013 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 42. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2014

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2014 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2014 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 43. [Article] Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2015

  Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), ...

  Citation × Citation Citation Abstract Copy Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2015 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Title: Chinook Salmon Productivity and Escapement Monitoring in the John Day River Basin - Annual Technical Report 2015 Abstract -- Juvenile spring Chinook and steelhead migrants were captured at two rotary screw trap sites and while seining in the Mainstem John Day River to estimate abundance, smolt-to-adult survival (SAR), and to study the life history characteristics of steelhead in the John Day River subbasin. One rotary screw trap was located in the Upper Mainstem fourth-level HUC. The Mainstem trap at rkm 326 of the Mainstem John Day. The Mainstem trap is located downstream of the confluence of the Mainstem John Day River with the South Fork John Day River. The second rotary screw trap was located on the Middle Fork John Day River at rkm 24 and is hereafter referred to as the Middle Fork trap. Spawning ground surveys for spring (stream-type) Chinook salmon were conducted in four main spawning areas (Mainstem, Middle Fork, North Fork, and Granite Creek System) and six minor spawning areas (South Fork, Camas Creek, Desolation Creek, Trail Creek, Deardorff Creek and Clear Creek) in the John Day River basin. Originator: ODFW, Eastern Oregon Fish Research (EOFR). Funded by Oregon Watershed Enhancement Board (OWEB) Close

• 44. [Article] Willamette BiOp - Genetic Stock Identification and Relative Natural Production of Willamette River Steelhead

  Abstract -- We used genotypic data from 15 microsatellite loci to characterize the stock structure of Oncorhynchus mykiss in the upper Willamette River basin. We then used two analytical approaches, implemented ...

  Citation × Citation Citation Abstract Copy Title: Willamette BiOp - Genetic Stock Identification and Relative Natural Production of Willamette River Steelhead Abstract -- We used genotypic data from 15 microsatellite loci to characterize the stock structure of Oncorhynchus mykiss in the upper Willamette River basin. We then used two analytical approaches, implemented in the programs ONCOR and STRUCTURE, to assign (presumably) natural-origin, unmarked fish to their most likely reporting group or hybrid class. We investigated sibling relationships among unknown samples with the program ML RELATE. In the upper Willamette River, O. mykiss genetic structure can be characterized by four principal groups: summer steelhead of Skamania stock ancestry, eastern tributaries winter steelhead, western tributaries winter steelhead and resident rainbow trout. We found that about 10% of unmarked juvenile O. mykiss sampled at Willamette Falls in 2009-2011 were summer steelhead and that an additional 10% of samples were summer x winter steelhead hybrids. Most O. mykiss sampled from the McKenzie River were either summer steelhead or summer x winter steelhead hybrids. Natural production of pure summer steelhead appeared to be very low in the North and South Santiam rivers, though summer steelhead hybrids represented 11.1% and 14.8% of samples. Results from ML RELATE analyses appeared unreliable and inconclusive, and may have been limited by low genetic diversity among summer steelhead samples. We provide several recommendations to better understand and reduce potentially negative interactions between hatchery summer steelhead and native upper Willamette River O. mykiss populations. These include reductions in adult steelhead on natural spawning grounds, improved reproductive isolation between hatchery and native populations and additional research to evaluate genetic integrity within and among O. mykiss populations. Title: Willamette BiOp - Genetic Stock Identification and Relative Natural Production of Willamette River Steelhead Abstract -- We used genotypic data from 15 microsatellite loci to characterize the stock structure of Oncorhynchus mykiss in the upper Willamette River basin. We then used two analytical approaches, implemented in the programs ONCOR and STRUCTURE, to assign (presumably) natural-origin, unmarked fish to their most likely reporting group or hybrid class. We investigated sibling relationships among unknown samples with the program ML RELATE. In the upper Willamette River, O. mykiss genetic structure can be characterized by four principal groups: summer steelhead of Skamania stock ancestry, eastern tributaries winter steelhead, western tributaries winter steelhead and resident rainbow trout. We found that about 10% of unmarked juvenile O. mykiss sampled at Willamette Falls in 2009-2011 were summer steelhead and that an additional 10% of samples were summer x winter steelhead hybrids. Most O. mykiss sampled from the McKenzie River were either summer steelhead or summer x winter steelhead hybrids. Natural production of pure summer steelhead appeared to be very low in the North and South Santiam rivers, though summer steelhead hybrids represented 11.1% and 14.8% of samples. Results from ML RELATE analyses appeared unreliable and inconclusive, and may have been limited by low genetic diversity among summer steelhead samples. We provide several recommendations to better understand and reduce potentially negative interactions between hatchery summer steelhead and native upper Willamette River O. mykiss populations. These include reductions in adult steelhead on natural spawning grounds, improved reproductive isolation between hatchery and native populations and additional research to evaluate genetic integrity within and among O. mykiss populations. Close

• 45. [Article] Oregon North Coast Spring Chinook Stock Assessment – 2005-06 Information Reports 2008-01

  Abstract -- Chinook salmon populations of the Oregon coast exhibit two general life history types, classified as either spring-run or fall-run depending on adult life-history traits. Fall chinook are present ...

  Citation × Citation Citation Abstract Copy Title: Oregon North Coast Spring Chinook Stock Assessment – 2005-06 Information Reports 2008-01 Abstract -- Chinook salmon populations of the Oregon coast exhibit two general life history types, classified as either spring-run or fall-run depending on adult life-history traits. Fall chinook are present in most Oregon coastal basins, and the Oregon Department of Fish and Wildlife (ODFW) has identified 28 fall chinook populations in this area (ODFW 2005). Spring chinook salmon are found in larger river basins on the Oregon coast, and the upper portions of the Umpqua and Rogue rivers. This is a more limited distribution than coastal fall chinook and includes only 10 populations (ODFW 2005). Oregon coastal fall chinook stocks have been monitored through a set of 56 standard spawning ground surveys, many conducted since the 1950’s. There has not been a similar, consistent, coast-wide monitoring program for Oregon coastal spring chinook spawners. Abundance of these populations has been monitoring through a variety of methods including; freshwater harvest estimates, counts at dams and weirs, summer resting hole counts, and spawning ground surveys. In 1998, the National Marine Fisheries Service (NMFS) reviewed west coast chinook salmon populations in regards to status under the Federal Endangered Species Act (ESA). The NMFS identified a total of 15 Evolutionarily Significant Units (ESUs) of chinook salmon (Myers et al. 1998). Oregon coastal chinook are predominantly in the Oregon Coast ESU (Necanicum River to Elk River). This ESU includes both spring and fall chinook, and was determined to not warrant listing (Federal Register Notice 1998). In 2005, ODFW conducted a review of Oregon native fish status, in regards to the State’s Native Fish Conservation Policy. This review grouped populations by Species Management Unit (SMU), and examined coastal spring and fall chinook populations separately. The review determined the near-term sustainability of the Coastal Fall Chinook SMU was not at risk, but the Coastal Spring Chinook SMU was at risk (ODFW 2005). The Tillamook and Nestucca spring chinook populations were of particular concern because they failed to pass the interim criteria for abundance, productivity, and reproductive independence. Hatchery supplementation of spring chinook has occurred in the Tillamook and Nestucca basins since the early 1900’s. Currently, approximately 450,000 spring chinook smolts are released annually from Trask Hatchery, Cedar Creek Hatchery (Nestucca), and from a STEP program at Whiskey Creek. These hatchery smolts have been mass marked with an adipose fin clip since the 1998 brood year. Therefore, hatchery origin adult spring chinook may now be positively identified by the lack of an adipose fin. Declining trends in wild coastal spring chinook populations have resulted in management actions to target harvest on adipose fin clipped hatchery fish, and to restrict harvest of wild origin fish. Results of status reviews, and changes in management practices have required a more thorough evaluation of stock status for the Tillamook and Nestucca spring chinook populations (Keith Braun, personal communication). Therefore, ODFW developed a monitoring plan for spring chinook in these basins. The monitoring plan identified four project objectives; 1) Determine adult spring chinook abundance in the Trask, Wilson, and Nestucca Rivers, 2) Determine hatchery vs. wild ratios for these three basins, 3) Determine age structure and sex ratios for adult spawners, and 4) Determine distribution and abundance for spring chinook recycled from local ODFW hatcheries. This project began in 2004 with an exploratory season to determine distribution, survey methodology, and feasibility of the proposed protocol. In 2005 and 2006 a more intensive sampling effort was implemented, designed to cover the entire distribution of spring chinook spawning in the Nestucca, Trask, and Wilson rivers. Since 2004, project field work has been funded with Restoration and Enhancement Program (R&E) funds, administered by Oregon Department of Fish and Wildlife. Project administration is covered through existing funding for the ODFW Oregon Adult Salmonid Inventory and Sampling Project (OASIS). Funding from R&E is scheduled to continue through the 2008 spawning season. Further monitoring will require a new funding source for project field work. This report documents results for project Objectives 1 to 4, including the abundance and distribution of spring chinook spawners during 2005 and 2006 in Oregon’s Trask, Wilson, and Nestucca river basins. Title: Oregon North Coast Spring Chinook Stock Assessment – 2005-06 Information Reports 2008-01 Abstract -- Chinook salmon populations of the Oregon coast exhibit two general life history types, classified as either spring-run or fall-run depending on adult life-history traits. Fall chinook are present in most Oregon coastal basins, and the Oregon Department of Fish and Wildlife (ODFW) has identified 28 fall chinook populations in this area (ODFW 2005). Spring chinook salmon are found in larger river basins on the Oregon coast, and the upper portions of the Umpqua and Rogue rivers. This is a more limited distribution than coastal fall chinook and includes only 10 populations (ODFW 2005). Oregon coastal fall chinook stocks have been monitored through a set of 56 standard spawning ground surveys, many conducted since the 1950’s. There has not been a similar, consistent, coast-wide monitoring program for Oregon coastal spring chinook spawners. Abundance of these populations has been monitoring through a variety of methods including; freshwater harvest estimates, counts at dams and weirs, summer resting hole counts, and spawning ground surveys. In 1998, the National Marine Fisheries Service (NMFS) reviewed west coast chinook salmon populations in regards to status under the Federal Endangered Species Act (ESA). The NMFS identified a total of 15 Evolutionarily Significant Units (ESUs) of chinook salmon (Myers et al. 1998). Oregon coastal chinook are predominantly in the Oregon Coast ESU (Necanicum River to Elk River). This ESU includes both spring and fall chinook, and was determined to not warrant listing (Federal Register Notice 1998). In 2005, ODFW conducted a review of Oregon native fish status, in regards to the State’s Native Fish Conservation Policy. This review grouped populations by Species Management Unit (SMU), and examined coastal spring and fall chinook populations separately. The review determined the near-term sustainability of the Coastal Fall Chinook SMU was not at risk, but the Coastal Spring Chinook SMU was at risk (ODFW 2005). The Tillamook and Nestucca spring chinook populations were of particular concern because they failed to pass the interim criteria for abundance, productivity, and reproductive independence. Hatchery supplementation of spring chinook has occurred in the Tillamook and Nestucca basins since the early 1900’s. Currently, approximately 450,000 spring chinook smolts are released annually from Trask Hatchery, Cedar Creek Hatchery (Nestucca), and from a STEP program at Whiskey Creek. These hatchery smolts have been mass marked with an adipose fin clip since the 1998 brood year. Therefore, hatchery origin adult spring chinook may now be positively identified by the lack of an adipose fin. Declining trends in wild coastal spring chinook populations have resulted in management actions to target harvest on adipose fin clipped hatchery fish, and to restrict harvest of wild origin fish. Results of status reviews, and changes in management practices have required a more thorough evaluation of stock status for the Tillamook and Nestucca spring chinook populations (Keith Braun, personal communication). Therefore, ODFW developed a monitoring plan for spring chinook in these basins. The monitoring plan identified four project objectives; 1) Determine adult spring chinook abundance in the Trask, Wilson, and Nestucca Rivers, 2) Determine hatchery vs. wild ratios for these three basins, 3) Determine age structure and sex ratios for adult spawners, and 4) Determine distribution and abundance for spring chinook recycled from local ODFW hatcheries. This project began in 2004 with an exploratory season to determine distribution, survey methodology, and feasibility of the proposed protocol. In 2005 and 2006 a more intensive sampling effort was implemented, designed to cover the entire distribution of spring chinook spawning in the Nestucca, Trask, and Wilson rivers. Since 2004, project field work has been funded with Restoration and Enhancement Program (R&E) funds, administered by Oregon Department of Fish and Wildlife. Project administration is covered through existing funding for the ODFW Oregon Adult Salmonid Inventory and Sampling Project (OASIS). Funding from R&E is scheduled to continue through the 2008 spawning season. Further monitoring will require a new funding source for project field work. This report documents results for project Objectives 1 to 4, including the abundance and distribution of spring chinook spawners during 2005 and 2006 in Oregon’s Trask, Wilson, and Nestucca river basins. Close

• 46. [Article] Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Technical Report 2004

  Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most ...

  Citation × Citation Citation Abstract Copy Title: Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Technical Report 2004 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Title: Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Technical Report 2004 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 47. [Article] Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2005

  Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most ...

  Citation × Citation Citation Abstract Copy Title: Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2005 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Title: Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2005 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 48. [Article] Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2006

  Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most ...

  Citation × Citation Citation Abstract Copy Title: Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2006 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Title: Fish Research Project Oregon; Implementation of the Environmental Monitoring and Assessment Program (EMAP) Protocol in the John Day Subbasin of the Columbia Plateau Province - Annual Progress Report 2006 Abstract -- The Independent Scientific Review Panel (ISRP), in their guidance on monitoring, strongly recommended that the region move away from index surveys and embrace probabilistic sampling for most population and habitat monitoring. To meet the ISRP’s recommendation, we extended the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day subbasin. This approach incorporates the sampling strategy of the U.S. Environmental Protection Agency’s (EPA’s) Environmental Monitoring and Assessment Program (EMAP). The EMAP is a long-term research effort with a statistically based and spatially explicit sampling design. This program, successfully implemented in Oregon’s coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, integrate on-going sampling efforts, and improve agency coordination. The objectives of this project are to determine annual estimates of steelhead spawner escapement, juvenile salmonid rearing distributions, physical habitat conditions, smolt-to-adult survival rates (SAR), and track changes in the status and trends of these estimates over time. We began to meet these objectives in 2004 through spawning ground surveys initiated in spring and juvenile salmonid and habitat surveys during summer. In addition, data from on-going projects in the basin, such as smolt and adult monitoring, will be incorporated in future years to develop a more complete picture of status and trends in resources and life-stage specific survival not targeted under the EMAP program. We believe this project will be the vehicle to synthesize all related fish population and habitat monitoring data at the provincial and subbasin scales. ODFW, Eastern Oregon Fish Research (EOFR) Close

• 49. [Article] Status of Oregon Stocks of Coho Salmon, 2004 through 2008 Report Number: OPSW-ODFW-2009-3

  Abstract -- This report summarizes five years of monitoring status and trend in Oregon’s naturally spawning coho salmon (Oncorhynchus kisutch) populations. The five coho run years reported are 2004 through ...

  Citation × Citation Citation Abstract Copy Title: Status of Oregon Stocks of Coho Salmon, 2004 through 2008 Report Number: OPSW-ODFW-2009-3 Abstract -- This report summarizes five years of monitoring status and trend in Oregon’s naturally spawning coho salmon (Oncorhynchus kisutch) populations. The five coho run years reported are 2004 through 2008. Monitoring results include: abundance of naturally spawning coho; density of spawning coho; coho spawn timing; and proportion of hatchery (marked) coho in naturally spawning populations. These results are based on data from randomly selected spawning surveys, as well as other methods in areas without adequate random surveys. Results for coho standard spawning surveys, as well as spawning surveys for other species are covered in data summaries and reports posted on an Oregon Department of Fish and Wildlife (ODFW) web page (see: http://oregonstate.edu/dept/ODFW/spawn/index.htm). Monitoring occurs at three hierarchical spatial scales, as defined by the National Marine Fisheries Service (NMFS): Evolutionarily Significant Unit (ESU); Stratum; and coho Population. There are three coho ESU’s located entirely or partially within the State of Oregon: the Lower Columbia River (LCR) Coho ESU; the Oregon Coast (OC) Coho ESU; and the Southern Oregon/Northern California Coasts (SONCC) Coho ESU. This report summarizes results for coho populations in the portion of each ESU that is within the State of Oregon. In the Oregon portion of the LCR Coho ESU sufficient surveys were conducted to meet precision goals at the ESU level three out of the five sampling years. At the population complex scale, yearly precision goals were rarely met. Wild spawner abundance remained fairly stable over the five sampling years; hatchery abundance was more variable. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent at both the stratum and population scale. In the Oregon Coast ESU sufficient surveys were conducted to meet precision goals at the ESU level in all five sampling years, however at the population scale, precision goals were rarely met. Wild spawner abundance declined over the first four sampling years, but showed a significant increase in the fifth sampling year. The proportion of hatchery fish was generally low, but variable over the five sampling years. Only two populations, Salmon River and North Umpqua River, consistently had over 10% hatchery fish on the spawning grounds. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent. Inadequate funding and the need to update the GRTS sampling frame continue to hamper monitoring of the Oregon portion of the Southern Oregon/Northern California Coasts Coho ESU. In the Oregon portion of the ESU insufficient surveys were conducted to meet precision goals at the ESU level in any of the four years when GRTS surveys were done. However, estimates of wild coho spawners were obtained in all five years based on Huntley Park seining. Wild coho spawner abundance declined substantially over the five run years; but the proportion of hatchery coho spawning naturally was fairly low and stable. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent. Title: Status of Oregon Stocks of Coho Salmon, 2004 through 2008 Report Number: OPSW-ODFW-2009-3 Abstract -- This report summarizes five years of monitoring status and trend in Oregon’s naturally spawning coho salmon (Oncorhynchus kisutch) populations. The five coho run years reported are 2004 through 2008. Monitoring results include: abundance of naturally spawning coho; density of spawning coho; coho spawn timing; and proportion of hatchery (marked) coho in naturally spawning populations. These results are based on data from randomly selected spawning surveys, as well as other methods in areas without adequate random surveys. Results for coho standard spawning surveys, as well as spawning surveys for other species are covered in data summaries and reports posted on an Oregon Department of Fish and Wildlife (ODFW) web page (see: http://oregonstate.edu/dept/ODFW/spawn/index.htm). Monitoring occurs at three hierarchical spatial scales, as defined by the National Marine Fisheries Service (NMFS): Evolutionarily Significant Unit (ESU); Stratum; and coho Population. There are three coho ESU’s located entirely or partially within the State of Oregon: the Lower Columbia River (LCR) Coho ESU; the Oregon Coast (OC) Coho ESU; and the Southern Oregon/Northern California Coasts (SONCC) Coho ESU. This report summarizes results for coho populations in the portion of each ESU that is within the State of Oregon. In the Oregon portion of the LCR Coho ESU sufficient surveys were conducted to meet precision goals at the ESU level three out of the five sampling years. At the population complex scale, yearly precision goals were rarely met. Wild spawner abundance remained fairly stable over the five sampling years; hatchery abundance was more variable. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent at both the stratum and population scale. In the Oregon Coast ESU sufficient surveys were conducted to meet precision goals at the ESU level in all five sampling years, however at the population scale, precision goals were rarely met. Wild spawner abundance declined over the first four sampling years, but showed a significant increase in the fifth sampling year. The proportion of hatchery fish was generally low, but variable over the five sampling years. Only two populations, Salmon River and North Umpqua River, consistently had over 10% hatchery fish on the spawning grounds. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent. Inadequate funding and the need to update the GRTS sampling frame continue to hamper monitoring of the Oregon portion of the Southern Oregon/Northern California Coasts Coho ESU. In the Oregon portion of the ESU insufficient surveys were conducted to meet precision goals at the ESU level in any of the four years when GRTS surveys were done. However, estimates of wild coho spawners were obtained in all five years based on Huntley Park seining. Wild coho spawner abundance declined substantially over the five run years; but the proportion of hatchery coho spawning naturally was fairly low and stable. Regional patterns in fish distribution, spawn timing, and hatchery proportion are apparent. Close

• 50. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2001 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2001. The main objective of this report is to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2001 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2001. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 1999 and 2000 cohorts of juvenile Chinook salmon, the collection, spawning, and adult characteristics for the 2001 return of adult Chinook salmon, and the collection of eggs for the 2001 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2001 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2001. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 1999 and 2000 cohorts of juvenile Chinook salmon, the collection, spawning, and adult characteristics for the 2001 return of adult Chinook salmon, and the collection of eggs for the 2001 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 51. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2002 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2002. The main objectives of this report are to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2002 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2002. The main objectives of this report are to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2000 and 2001 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2002 return of adult Chinook salmon, and the collection of eggs for the 2002 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2002 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2002. The main objectives of this report are to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2000 and 2001 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2002 return of adult Chinook salmon, and the collection of eggs for the 2002 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 52. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2003 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2003. The main objectives of this report are to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2003 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2003. The main objectives of this report are to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2001 cohort of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics for the 2003 return of adult Chinook salmon, and the collection of eggs for the 2003 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2003 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2003. The main objectives of this report are to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2001 cohort of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics for the 2003 return of adult Chinook salmon, and the collection of eggs for the 2003 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 53. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2004 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2004. Also summarized are adult broodstock monitoring data collected ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2004 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2004. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2002 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics for the 2004 return of adult Chinook salmon, and the collection of eggs for the 2004 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2004 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2004. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2002 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics for the 2004 return of adult Chinook salmon, and the collection of eggs for the 2004 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 54. [Article] Work Completed for Compliance with the Biological Opinion for Hatchery Programs in the Willamette Basin USACE funding: 2004 Annual Report

  Abstract -- The National Marine Fisheries Service (NMFS) has listed spring chinook salmon(Oncorhynchus tshawytscha) and winter steelhead (O. mykiss) in the Upper Willamette River Evolutionarily Significant ...

  Citation × Citation Citation Abstract Copy Title: Work Completed for Compliance with the Biological Opinion for Hatchery Programs in the Willamette Basin USACE funding: 2004 Annual Report Abstract -- The National Marine Fisheries Service (NMFS) has listed spring chinook salmon(Oncorhynchus tshawytscha) and winter steelhead (O. mykiss) in the Upper Willamette River Evolutionarily Significant Unit (ESU) as threatened under the Endangered Species Act (ESA; 64 FRN 14308; 64 FRN 14517). Concomitant with this listing, any actions taken or funded by a federal agency must be evaluated to assess whether these actions are likely to jeopardize the continued existence of threatened and endangered species, or result in the destruction or impairment of critical habitat. Several fish hatcheries operate within the ESU and may impact wild populations of listed species. Although all of the artificial propagation programs that potentially affect listed salmonids in the Upper Willamette River ESUs are operated by the Oregon Department of Fish and Wildlife(ODFW), 90% of the funding for these operations comes from the U.S. Army Corps of Engineers (COE). Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation,increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring chinook and winter steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Title: Work Completed for Compliance with the Biological Opinion for Hatchery Programs in the Willamette Basin USACE funding: 2004 Annual Report Abstract -- The National Marine Fisheries Service (NMFS) has listed spring chinook salmon(Oncorhynchus tshawytscha) and winter steelhead (O. mykiss) in the Upper Willamette River Evolutionarily Significant Unit (ESU) as threatened under the Endangered Species Act (ESA; 64 FRN 14308; 64 FRN 14517). Concomitant with this listing, any actions taken or funded by a federal agency must be evaluated to assess whether these actions are likely to jeopardize the continued existence of threatened and endangered species, or result in the destruction or impairment of critical habitat. Several fish hatcheries operate within the ESU and may impact wild populations of listed species. Although all of the artificial propagation programs that potentially affect listed salmonids in the Upper Willamette River ESUs are operated by the Oregon Department of Fish and Wildlife(ODFW), 90% of the funding for these operations comes from the U.S. Army Corps of Engineers (COE). Possible risks of artificial propagation programs have been well documented. Hazards include disease transfer, competition for food and spawning sites, increased predation,increased incidental mortality from harvest, loss of genetic variability, genetic drift, and domestication (Steward and Bjornn 1990; Hard et al. 1992; Cuenco et al. 1993; Busack and Currens 1995; NRC 1996; and Waples 1999). Hatcheries can also play a positive role for wild salmonids by bolstering populations, especially those on the verge of extirpation, providing a genetic reserve in the case of extirpation, and providing opportunities for nutrient enrichment of streams (Steward and Bjornn 1990; Cuenco et al. 1993). The objective of this project is to evaluate the potential effects of hatchery programs on naturally spawning populations of spring chinook and winter steelhead within the Upper Willamette River ESU. The project employs four types of activities to achieve this goal: sampling of returns to hatcheries, creels to assess fisheries, monitoring of adult and juvenile migration through the use of traps and video observations, and monitoring natural production through spawning ground surveys. Close

• 55. [Article] Willamette Biological Opinion Hatchery Research 2009 Annual Report

  Abstract -- This report fulfills a requirement under Task Order NWPPM-09-FH-05, covering activities of July 2009–May 2010 that were implemented by ODFW on behalf of the Corps to assist with meeting the ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2009 Annual Report Abstract -- This report fulfills a requirement under Task Order NWPPM-09-FH-05, covering activities of July 2009–May 2010 that were implemented by ODFW on behalf of the Corps to assist with meeting the requirements of the reasonable and prudent alternatives (RPAs) and measures prescribed in the Willamette Project Biological Opinion (BiOp) of July 2008 (NOAA 2008). The Corps provided funding to continue ongoing monitoring activities and initiate long-term planning. Primary tasks by species included: Spring Chinook salmon Task 1.1: Determine abundance, distribution, and percent hatchery-origin fish on spawning grounds downstream of federal dams. Task 1.2: Monitor clipped & unclipped fish passing Leaburg and Upper Bennett dams. Task 2.1: Collection, spawn timing, and hatchery/wild composition for broodstock management. Task 2.2: Determine survival of outplanted fish (upstream of federal dams) and abundance of spawners. Title: Willamette Biological Opinion Hatchery Research 2009 Annual Report Abstract -- This report fulfills a requirement under Task Order NWPPM-09-FH-05, covering activities of July 2009–May 2010 that were implemented by ODFW on behalf of the Corps to assist with meeting the requirements of the reasonable and prudent alternatives (RPAs) and measures prescribed in the Willamette Project Biological Opinion (BiOp) of July 2008 (NOAA 2008). The Corps provided funding to continue ongoing monitoring activities and initiate long-term planning. Primary tasks by species included: Spring Chinook salmon Task 1.1: Determine abundance, distribution, and percent hatchery-origin fish on spawning grounds downstream of federal dams. Task 1.2: Monitor clipped & unclipped fish passing Leaburg and Upper Bennett dams. Task 2.1: Collection, spawn timing, and hatchery/wild composition for broodstock management. Task 2.2: Determine survival of outplanted fish (upstream of federal dams) and abundance of spawners. Close

• 56. [Article] Willamette Biological Opinion Hatchery Research 2010 Annual Report

  Abstract -- Task 1.1: Distribution, Abundance, and Proportion of Hatchery and Natural-Origin Chinook Salmon: Counts of spring Chinook redds were similar in 2010 compared to the 2002–2009 averages for the ...

  Citation × Citation Citation Abstract Copy Title: Willamette Biological Opinion Hatchery Research 2010 Annual Report Abstract -- Task 1.1: Distribution, Abundance, and Proportion of Hatchery and Natural-Origin Chinook Salmon: Counts of spring Chinook redds were similar in 2010 compared to the 2002–2009 averages for the Middle Fork Willamette, McKenzie and the North Santiam rivers and significantly higher in the South Santiam River Preliminary analyses indicate that the proportions of hatchery fish recovered as carcasses from the spawning grounds varied significantly among all four surveyed sub-basins (South Santiam > M. Fork Willamette > North Santiam > McKenzie) Task 1.2: Monitor fin-clipped & unclipped fish passing Leaburg and Upper Bennett dams. Adult fish passage at Leaburg and Upper Bennett dams was continuously monitored in 2010. We estimated that 2,696 spring Chinook (52% unclipped) passed above Leaburg Dam and 5,956 passed above upper Bennett Dam (14% unclipped). Passage at Leaburg Dam of fin-clipped fish was strongly bimodal with peaks in June (coincident with passage of the majority of unclipped fish) and September (coincident with a smaller proportion of unclipped fish). This bimodal peak suggests that hatchery fish might be removed in September to reduce the proportion of hatchery origin spawners while simultaneously reducing the impacts of handling wild fish. Task 2.1: Collection, spawn timing, and Hatchery/Wild (H/W ) composition for broodstock management. Collection, spawn timing, and H/W composition for broodstock management were successfully monitored at all facilities in 2010. Task 2.2: Determine Survival of Outplanted Fish and Abundance of Spawners. Patterns of pre-spawning mortality were similar to results in 2009 with mortality below project dams significantly higher than that above project dams. We did not detect significant differences in mortality between clipped and unclipped spring Chinook. In comparisons of pre-spawning mortality among sub-basins above project dams, pre-spawning mortality was uniformly low in the Breitenbush and N. Santiam above Detroit, S. Santiam above Foster, and in the S. Fork McKenzie. Pre-spawning mortality was uniformly higher above project dams in the N. Fork Mid. Fork Willamette, Fall Creek and the Little N. Fork Santiam. No comprehensive surveys were conducted in the Middle Fork Willamette. Task 3.1: Determine the extent of summer steelhead reproduction in the wild: We developed a formal study plan to analyze and interpret genetic results from a collection of 299 tissue samples from unclipped juvenile steelhead at Willamette Falls, five from the mainstem Willamette River, and two from the South Santiam River in 2010 in addition to a single sample from an unclipped adult steelhead at the Minto fish collection facility. Samples were preserved 7 and cataloged and then shipped to the NOAA Fisheries Manchester, Washington (WA) laboratory for analysis. Task 3.2: Evaluate release strategies for summer steelhead to increase migration and reduce impacts on wild fish. Study plans to evaluate advantages and disadvantages of volitional release strategies were completed and presented in the 2009 annual report to USACE (Cannon et al. 2010). Funding to process the tissue samples was not available in 2010, and no progress was made in executing the proposed work. Title: Willamette Biological Opinion Hatchery Research 2010 Annual Report Abstract -- Task 1.1: Distribution, Abundance, and Proportion of Hatchery and Natural-Origin Chinook Salmon: Counts of spring Chinook redds were similar in 2010 compared to the 2002–2009 averages for the Middle Fork Willamette, McKenzie and the North Santiam rivers and significantly higher in the South Santiam River Preliminary analyses indicate that the proportions of hatchery fish recovered as carcasses from the spawning grounds varied significantly among all four surveyed sub-basins (South Santiam > M. Fork Willamette > North Santiam > McKenzie) Task 1.2: Monitor fin-clipped & unclipped fish passing Leaburg and Upper Bennett dams. Adult fish passage at Leaburg and Upper Bennett dams was continuously monitored in 2010. We estimated that 2,696 spring Chinook (52% unclipped) passed above Leaburg Dam and 5,956 passed above upper Bennett Dam (14% unclipped). Passage at Leaburg Dam of fin-clipped fish was strongly bimodal with peaks in June (coincident with passage of the majority of unclipped fish) and September (coincident with a smaller proportion of unclipped fish). This bimodal peak suggests that hatchery fish might be removed in September to reduce the proportion of hatchery origin spawners while simultaneously reducing the impacts of handling wild fish. Task 2.1: Collection, spawn timing, and Hatchery/Wild (H/W ) composition for broodstock management. Collection, spawn timing, and H/W composition for broodstock management were successfully monitored at all facilities in 2010. Task 2.2: Determine Survival of Outplanted Fish and Abundance of Spawners. Patterns of pre-spawning mortality were similar to results in 2009 with mortality below project dams significantly higher than that above project dams. We did not detect significant differences in mortality between clipped and unclipped spring Chinook. In comparisons of pre-spawning mortality among sub-basins above project dams, pre-spawning mortality was uniformly low in the Breitenbush and N. Santiam above Detroit, S. Santiam above Foster, and in the S. Fork McKenzie. Pre-spawning mortality was uniformly higher above project dams in the N. Fork Mid. Fork Willamette, Fall Creek and the Little N. Fork Santiam. No comprehensive surveys were conducted in the Middle Fork Willamette. Task 3.1: Determine the extent of summer steelhead reproduction in the wild: We developed a formal study plan to analyze and interpret genetic results from a collection of 299 tissue samples from unclipped juvenile steelhead at Willamette Falls, five from the mainstem Willamette River, and two from the South Santiam River in 2010 in addition to a single sample from an unclipped adult steelhead at the Minto fish collection facility. Samples were preserved 7 and cataloged and then shipped to the NOAA Fisheries Manchester, Washington (WA) laboratory for analysis. Task 3.2: Evaluate release strategies for summer steelhead to increase migration and reduce impacts on wild fish. Study plans to evaluate advantages and disadvantages of volitional release strategies were completed and presented in the 2009 annual report to USACE (Cannon et al. 2010). Funding to process the tissue samples was not available in 2010, and no progress was made in executing the proposed work. Close

• 57. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2005 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2005. Also summarized are adult broodstock monitoring ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2005 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2005. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and successful spawning in nature by hatcheryreared adults, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2003 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics of adult Chinook salmon in the 2005 return year, and the collection of eggs for the 2005 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2005 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2005. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and successful spawning in nature by hatcheryreared adults, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2003 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics of adult Chinook salmon in the 2005 return year, and the collection of eggs for the 2005 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 58. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2006 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2006. Also summarized are adult broodstock monitoring ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2006 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2006. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and successful spawning in nature by hatcheryreared adults, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2004 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics of adult Chinook salmon in the 2006 return year, and the collection of eggs for the 2006 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2006 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2006. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality, smolt-to-adult survival rate, and successful spawning in nature by hatcheryreared adults, as well as to provide information to adapt the programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2004 brood year of juvenile Chinook salmon smolts, the collection, spawning, and adult characteristics of adult Chinook salmon in the 2006 return year, and the collection of eggs for the 2006 brood year. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 59. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2007 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2007. Also summarized are adult broodstock monitoring ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2007 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2007. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize eggto-smolt survival rate, smolt quality, smolt-to-adult survival rate, successful spawning in nature by hatchery-reared adults, and to provide information to adapt programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2005 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2007 brood year, Chinook spawning in nature, adult characteristics of adult Chinook salmon in the 2007 return year, and Bacterial Kidney Disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2007 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2007. Also summarized are adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers the Nez Perce Tribe (NPT) and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize eggto-smolt survival rate, smolt quality, smolt-to-adult survival rate, successful spawning in nature by hatchery-reared adults, and to provide information to adapt programs to most effectively meet management objectives. This report provides information on rearing and release operations for the 2005 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2007 brood year, Chinook spawning in nature, adult characteristics of adult Chinook salmon in the 2007 return year, and Bacterial Kidney Disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 60. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2008 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2008. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2008 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2008. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency. Overall, these data are used to modify culture practices as needed in order to optimize the egg-to-smolt survival, smolt quality, smolt-to-adult survival rate, and to track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2006 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2008 brood year, Chinook spawning in nature, numbers and characteristics of adult Chinook salmon in the 2008 return year, recruit summary and age composition of the 2003 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2008 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2008. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency. Overall, these data are used to modify culture practices as needed in order to optimize the egg-to-smolt survival, smolt quality, smolt-to-adult survival rate, and to track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2006 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2008 brood year, Chinook spawning in nature, numbers and characteristics of adult Chinook salmon in the 2008 return year, recruit summary and age composition of the 2003 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 61. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2009 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2009. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2009 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2009. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, the Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency. Overall, these data are used to modify culture practices, as needed, in order to optimize the egg-to-smolt survival, smolt quality, and smolt-toadult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2007 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2009 brood year, numbers and characteristics of adult Chinook salmon in the 2009 return year, spawning at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2004 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2009 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2009. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, the Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins. Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency. Overall, these data are used to modify culture practices, as needed, in order to optimize the egg-to-smolt survival, smolt quality, and smolt-toadult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2007 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2009 brood year, numbers and characteristics of adult Chinook salmon in the 2009 return year, spawning at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2004 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 62. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2010 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2010. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2010 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2010. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, the Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency). Overall, these data are used to modify culture practices, as needed, in order to optimize egg-to-smolt survival, smolt quality, and smolt-to-adult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2008 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2010 brood year, numbers and characteristics of adult Chinook salmon in the 2010 return year, the 2010 spawning year at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2005 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2010 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2010. Also summarized are the associated adult broodstock monitoring data collected in the Grande Ronde Basin by our co-managers, the Nez Perce Tribe (NPT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (Our co-managers, CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River, that are discussed and evaluated in reports prepared by each co-management agency). Overall, these data are used to modify culture practices, as needed, in order to optimize egg-to-smolt survival, smolt quality, and smolt-to-adult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2008 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2010 brood year, numbers and characteristics of adult Chinook salmon in the 2010 return year, the 2010 spawning year at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2005 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 63. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2015 Annual Progress Report

  Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2015 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2015 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 64. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2016 Annual Progress Report

  Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2016 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2016 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2015. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 65. [Article] Willamette BiOp - Genetic Diversity of Willamette River Spring Chinook Salmon Populations

  Abstract -- In this study, we used multilocus microsatellite genotype data from 813 spring Chinook salmon Oncorhynchus tshawytscha to investigate patterns of genetic diversity within and among wild and ...

  Citation × Citation Citation Abstract Copy Title: Willamette BiOp - Genetic Diversity of Willamette River Spring Chinook Salmon Populations Abstract -- In this study, we used multilocus microsatellite genotype data from 813 spring Chinook salmon Oncorhynchus tshawytscha to investigate patterns of genetic diversity within and among wild and hatchery populations from the Willamette River and Catherine Creek (Grande Ronde River, Oregon). We found that hatchery populations from the Willamette River presented higher heterozygosities than local wild populations, though no pattern was found for allelic richness. An analysis of genetic divergence (?) revealed little or no differentiation between hatchery and local wild populations within Willamette River subbasins. However, we observed weak but statistically significant structure among most Willamette River subbasins. Phylogenetic analyses of Willamette River populations further indicated that hatchery populations are most similar to local wild populations, though no inference could be made for wild Middle Fork Willamette Chinook due to an inadequate sample size. Genetic population structure did not closely reflect geographic structure of the Willamette River, as North Santiam River populations clustered with McKenzie River populations and South Santiam River populations formed a clade with hatchery Chinook from the Middle Fork Willamette River. Structure was particularly weak among populations from the Middle Fork Willamette and South Santiam rivers. We evaluated the accuracy of genetic stock identification for Willamette River spring Chinook, based on 13 GAPS (Genetic Analysis of Pacific Salmon) microsatellite markers. We found that with the GAPS baseline, individuals could be assigned to their population of origin (subbasin) with 43% - 64% accuracy. We estimated 100% assignment accuracy to the Catherine Creek Hatchery population, reflecting the distinctiveness of Willamette River Chinook relative to that population. We observed no measurable increase in assignment accuracy by adding four gene-linked markers to the GAPS baseline. We tested for signals of positive selection on both GAPS microsatellites and four gene-linked markers by examining inter-locus patterns of genetic differentiation. Although we found no evidence for locus-specific selection among Willamette River populations, one GAPS microsatellite and an immune-relevant marker presented aberrantly large genetic diversity index (FST) values between Willamette River populations and the Catherine Creek population. This result suggests that these loci may be linked to genes under positive selection that has generated markedly different allele frequencies in Catherine Creek and Willamette River spring Chinook. Lastly we used our empirical genotypic data from the McKenzie River hatchery and wild populations to perform forward-time simulations, modeling changes in ?, mean heterozygosity and total allele count over 30 generations. We use the term “migration” to describe the interaction of hatchery and wild fish in these simulations; namely the proportion of natural-origin fish spawned in the hatchery as broodstock and the proportion of hatchery fish present on natural spawning grounds. Our findings indicated that migration rates of at least 5% resulted in <2% decline in heterozygosity and an asymptotic FST value of 0.005 or less. No migration from one or both populations resulted in markedly higher rates of population divergence, loss of heterozygosity and reduction in alleles present. The mean number of alleles present (per locus) in the hatchery and wild populations was more sensitive to differences in migration rate than heterozygosity, whereby low levels of hatchery straying and natural-origin broodstock integration best conserved genetic diversity. Title: Willamette BiOp - Genetic Diversity of Willamette River Spring Chinook Salmon Populations Abstract -- In this study, we used multilocus microsatellite genotype data from 813 spring Chinook salmon Oncorhynchus tshawytscha to investigate patterns of genetic diversity within and among wild and hatchery populations from the Willamette River and Catherine Creek (Grande Ronde River, Oregon). We found that hatchery populations from the Willamette River presented higher heterozygosities than local wild populations, though no pattern was found for allelic richness. An analysis of genetic divergence (?) revealed little or no differentiation between hatchery and local wild populations within Willamette River subbasins. However, we observed weak but statistically significant structure among most Willamette River subbasins. Phylogenetic analyses of Willamette River populations further indicated that hatchery populations are most similar to local wild populations, though no inference could be made for wild Middle Fork Willamette Chinook due to an inadequate sample size. Genetic population structure did not closely reflect geographic structure of the Willamette River, as North Santiam River populations clustered with McKenzie River populations and South Santiam River populations formed a clade with hatchery Chinook from the Middle Fork Willamette River. Structure was particularly weak among populations from the Middle Fork Willamette and South Santiam rivers. We evaluated the accuracy of genetic stock identification for Willamette River spring Chinook, based on 13 GAPS (Genetic Analysis of Pacific Salmon) microsatellite markers. We found that with the GAPS baseline, individuals could be assigned to their population of origin (subbasin) with 43% - 64% accuracy. We estimated 100% assignment accuracy to the Catherine Creek Hatchery population, reflecting the distinctiveness of Willamette River Chinook relative to that population. We observed no measurable increase in assignment accuracy by adding four gene-linked markers to the GAPS baseline. We tested for signals of positive selection on both GAPS microsatellites and four gene-linked markers by examining inter-locus patterns of genetic differentiation. Although we found no evidence for locus-specific selection among Willamette River populations, one GAPS microsatellite and an immune-relevant marker presented aberrantly large genetic diversity index (FST) values between Willamette River populations and the Catherine Creek population. This result suggests that these loci may be linked to genes under positive selection that has generated markedly different allele frequencies in Catherine Creek and Willamette River spring Chinook. Lastly we used our empirical genotypic data from the McKenzie River hatchery and wild populations to perform forward-time simulations, modeling changes in ?, mean heterozygosity and total allele count over 30 generations. We use the term “migration” to describe the interaction of hatchery and wild fish in these simulations; namely the proportion of natural-origin fish spawned in the hatchery as broodstock and the proportion of hatchery fish present on natural spawning grounds. Our findings indicated that migration rates of at least 5% resulted in <2% decline in heterozygosity and an asymptotic FST value of 0.005 or less. No migration from one or both populations resulted in markedly higher rates of population divergence, loss of heterozygosity and reduction in alleles present. The mean number of alleles present (per locus) in the hatchery and wild populations was more sensitive to differences in migration rate than heterozygosity, whereby low levels of hatchery straying and natural-origin broodstock integration best conserved genetic diversity. Close

• 66. [Article] Recovery of Wild Coho Salmon in Salmon River Basin, 2008 Report Number: OPSW-ODFW-2009-10

  Abstract -- Recovery and conservation of naturally self-sustaining salmon populations is a central goal of the Oregon Plan for Salmon and Watersheds. In 1998, the Oregon Department of Fish and Wildlife ...

  Citation × Citation Citation Abstract Copy Title: Recovery of Wild Coho Salmon in Salmon River Basin, 2008 Report Number: OPSW-ODFW-2009-10 Abstract -- Recovery and conservation of naturally self-sustaining salmon populations is a central goal of the Oregon Plan for Salmon and Watersheds. In 1998, the Oregon Department of Fish and Wildlife (ODFW) initiated a comprehensive program to monitor the status of coho salmon (Oncorhynchus kisutch) populations and aquatic habitat in coastal drainages of Oregon (OWEB 2003). A 2005 assessment by ODFW concluded that Oregon coastal coho were viable at the scale of the Evolutionary Significant Unit (ESU) and demonstrated resilience in response to improving ocean conditions. Yet 7 of 21 (33%) individual populations within the ESU failed one or more of five criteria used to assess viability (Chilcote et al. 2005), and it is uncertain whether productivity levels across the ESU will recover sufficiently to withstand future periods of poor ocean conditions. The coho population in Salmon River was the only population in the ESU to fail all five viability criteria. Uncertainty remains about the response of Oregon coastal coho salmon to different combinations of freshwater and marine limiting factors, complicating recovery efforts (Lawson 1993; Lawson et al. 2004; IMST 2006). Such uncertainty cannot be resolved entirely by existing Oregon Plan monitoring programs, which target only a portion of the habitats and coho salmon life stages in large river basins, and with few exceptions (e.g., Johnson et al. 2005), were not designed to test population responses to individual management manipulations. In 2007, in response to the failure of viability criteria, ODFW managers discontinued releases of hatchery coho salmon into Salmon River as one of the primary management actions under the Oregon Conservation Plan for the Oregon Coast Coho Evolutionarily Significant Unit (hereafter “coho plan,” Nicholas 2006). This change affords the first opportunity in Oregon to monitor the results of a large scale experiment in removing hatchery coho salmon from a basin for at least four generations (twelve years). Hatchery production has been a centerpiece of salmon management for decades, but rarely has full recovery from hatchery influence been given a chance to succeed. Salmon River offers a test basin to explore whether an independent population of coho salmon can recover from a prolonged period of very low abundance following removal of the primary factor limiting productivity. Here we describe the first year of a study to monitor the dynamics of the coho salmon population in the Salmon River basin on the central Oregon coast and to determine whether management changes targeting both hatchery influence and stream habitat complexity improve population viability. This research will validate assumptions about factors limiting coho recovery and determine whether recovery measures proposed by the Coho Plan have been effective. Our research is designed to document changes in population abundance, distribution, and life history structure of coho salmon following the removal of hatchery coho salmon from the watershed. It integrates adult, juvenile, and habitat components to establish links and describe variability between juvenile performance and adult recovery. It also monitors the coho salmon population across habitat types and life history stages to identify population responses at a landscape scale. We will establish the link between productivity and survival at each salmon life stage and recovery of the adult population. From these indicators, we will determine the potential resiliency of coho salmon, detail the biological benefits/tradeoffs of returning the ecosystem to natural salmon production, and assess whether supplementation should remain an option in Salmon River. As a conceptual framework, our research design and analyses are guided by the “viable salmonid population” criteria identified by McElhany (2000) and modified by Chilcote et al. (2005) and Nicholas (2006), including abundance, productivity, distribution, diversity, and habitat quality. The results of our new research will be integrated with habitat survey and adult population data collected under the existing Oregon Plan monitoring program and coho salmon population and life history data available from previous Salmon River surveys (Mullen 1978, 1979; Cornwell et al. 2001; Bottom et al 2005; Volk et al. in review). Together these data will address four principal objectives: 1. Quantify viability of the coho salmon population before and after hatchery coho salmon are removed from Salmon River. 2. Assess whether viability of the Salmon River coho population is limited by quantity and complexity of stream habitat. 3. Describe the diversity of juvenile and adult life histories of coho salmon in the Salmon River basin and estimate the relative contributions of alternate juvenile life history to adult returns. 4. Determine salmonid use and benefits of restored tidal wetlands before and after hatchery coho salmon are removed from Salmon River. By synthesizing historic data with new information for the Salmon River basin, we will compare population structure during three distinct periods – pre-hatchery (1974-77), hatchery (1990-2008), and post-hatchery (2009-2013). This annual report discusses the activities and findings from 2008, the first year of the multi-year project, including coho salmon distribution and abundance on the Salmon River spawning grounds, juvenile abundance and distribution in the watershed and estuary, migration timing, and life history diversity. Title: Recovery of Wild Coho Salmon in Salmon River Basin, 2008 Report Number: OPSW-ODFW-2009-10 Abstract -- Recovery and conservation of naturally self-sustaining salmon populations is a central goal of the Oregon Plan for Salmon and Watersheds. In 1998, the Oregon Department of Fish and Wildlife (ODFW) initiated a comprehensive program to monitor the status of coho salmon (Oncorhynchus kisutch) populations and aquatic habitat in coastal drainages of Oregon (OWEB 2003). A 2005 assessment by ODFW concluded that Oregon coastal coho were viable at the scale of the Evolutionary Significant Unit (ESU) and demonstrated resilience in response to improving ocean conditions. Yet 7 of 21 (33%) individual populations within the ESU failed one or more of five criteria used to assess viability (Chilcote et al. 2005), and it is uncertain whether productivity levels across the ESU will recover sufficiently to withstand future periods of poor ocean conditions. The coho population in Salmon River was the only population in the ESU to fail all five viability criteria. Uncertainty remains about the response of Oregon coastal coho salmon to different combinations of freshwater and marine limiting factors, complicating recovery efforts (Lawson 1993; Lawson et al. 2004; IMST 2006). Such uncertainty cannot be resolved entirely by existing Oregon Plan monitoring programs, which target only a portion of the habitats and coho salmon life stages in large river basins, and with few exceptions (e.g., Johnson et al. 2005), were not designed to test population responses to individual management manipulations. In 2007, in response to the failure of viability criteria, ODFW managers discontinued releases of hatchery coho salmon into Salmon River as one of the primary management actions under the Oregon Conservation Plan for the Oregon Coast Coho Evolutionarily Significant Unit (hereafter “coho plan,” Nicholas 2006). This change affords the first opportunity in Oregon to monitor the results of a large scale experiment in removing hatchery coho salmon from a basin for at least four generations (twelve years). Hatchery production has been a centerpiece of salmon management for decades, but rarely has full recovery from hatchery influence been given a chance to succeed. Salmon River offers a test basin to explore whether an independent population of coho salmon can recover from a prolonged period of very low abundance following removal of the primary factor limiting productivity. Here we describe the first year of a study to monitor the dynamics of the coho salmon population in the Salmon River basin on the central Oregon coast and to determine whether management changes targeting both hatchery influence and stream habitat complexity improve population viability. This research will validate assumptions about factors limiting coho recovery and determine whether recovery measures proposed by the Coho Plan have been effective. Our research is designed to document changes in population abundance, distribution, and life history structure of coho salmon following the removal of hatchery coho salmon from the watershed. It integrates adult, juvenile, and habitat components to establish links and describe variability between juvenile performance and adult recovery. It also monitors the coho salmon population across habitat types and life history stages to identify population responses at a landscape scale. We will establish the link between productivity and survival at each salmon life stage and recovery of the adult population. From these indicators, we will determine the potential resiliency of coho salmon, detail the biological benefits/tradeoffs of returning the ecosystem to natural salmon production, and assess whether supplementation should remain an option in Salmon River. As a conceptual framework, our research design and analyses are guided by the “viable salmonid population” criteria identified by McElhany (2000) and modified by Chilcote et al. (2005) and Nicholas (2006), including abundance, productivity, distribution, diversity, and habitat quality. The results of our new research will be integrated with habitat survey and adult population data collected under the existing Oregon Plan monitoring program and coho salmon population and life history data available from previous Salmon River surveys (Mullen 1978, 1979; Cornwell et al. 2001; Bottom et al 2005; Volk et al. in review). Together these data will address four principal objectives: 1. Quantify viability of the coho salmon population before and after hatchery coho salmon are removed from Salmon River. 2. Assess whether viability of the Salmon River coho population is limited by quantity and complexity of stream habitat. 3. Describe the diversity of juvenile and adult life histories of coho salmon in the Salmon River basin and estimate the relative contributions of alternate juvenile life history to adult returns. 4. Determine salmonid use and benefits of restored tidal wetlands before and after hatchery coho salmon are removed from Salmon River. By synthesizing historic data with new information for the Salmon River basin, we will compare population structure during three distinct periods – pre-hatchery (1974-77), hatchery (1990-2008), and post-hatchery (2009-2013). This annual report discusses the activities and findings from 2008, the first year of the multi-year project, including coho salmon distribution and abundance on the Salmon River spawning grounds, juvenile abundance and distribution in the watershed and estuary, migration timing, and life history diversity. Close

• 67. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2011 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2011. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2011 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2011. Also summarized are the associated adult broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in reports prepared by each co-management agency). Overall, these data are used to modify culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2009 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2011 brood year, numbers and characteristics of adult Chinook salmon in the 2011 return year, the 2011 spawning year at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2006 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2011 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2011. Also summarized are the associated adult broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT, have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in reports prepared by each co-management agency). Overall, these data are used to modify culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality, and smolt-to-adult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2009 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2011 brood year, numbers and characteristics of adult Chinook salmon in the 2011 return year, the 2011 spawning year at Lookingglass Fish Hatchery and in nature, recruit summary and age composition of the 2006 brood year, and bacterial kidney disease (BKD) monitoring. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 68. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2012 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2012. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2012 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2012. Also summarized are the associated adult broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to modify fish culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality and smolt-toadult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2010 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2012 brood year, numbers and characteristics of adult Chinook salmon in the 2012 return year, the 2012 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD) monitoring, and recruit summary and age composition of the 2007 brood year. These metrics document the success of these pograms in meeting the LSRCP objectives for adult salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2012 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2012. Also summarized are the associated adult broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to modify fish culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality and smolt-toadult survival rate, and track spawning in nature by hatchery-reared adults. This report provides information on rearing and release operations for the 2010 brood year of juvenile Chinook salmon smolts, the collection of eggs for the 2012 brood year, numbers and characteristics of adult Chinook salmon in the 2012 return year, the 2012 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD) monitoring, and recruit summary and age composition of the 2007 brood year. These metrics document the success of these pograms in meeting the LSRCP objectives for adult salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 69. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2013 Annual Progress Report

  Abstract -- This annual progress report summarizes spring Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2013. Also summarized are the ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2013 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2013. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to modify salmon culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality, and smolt-toadult survival rate, and monitor spawning in nature by hatchery-reared salmon. This report provides information on rearing and release operations for brood year (BY) 2011 of juvenile Chinook Salmon smolts, the collection of eggs for BY 2013, numbers and characteristics of mature Chinook Salmon in the 2013 return year, the 2013 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD), and survival information (e.g., SAR, R:S) for BY 2008. These metrics document the success of these programs in meeting the LSRCP objectives for mature salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. In order to avoid confusion around whether jacks (age 3) are included with adult metrics, we will use the convention that “adults” include only ages 4 and 5 and “total” or “mature salmon” include all identifiable sexually mature salmon ages 3–5. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2013 Annual Progress Report Abstract -- This annual progress report summarizes spring Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2013. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to modify salmon culture practices, as needed, in order to optimize egg-to-smolt survival rate, smolt quality, and smolt-toadult survival rate, and monitor spawning in nature by hatchery-reared salmon. This report provides information on rearing and release operations for brood year (BY) 2011 of juvenile Chinook Salmon smolts, the collection of eggs for BY 2013, numbers and characteristics of mature Chinook Salmon in the 2013 return year, the 2013 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD), and survival information (e.g., SAR, R:S) for BY 2008. These metrics document the success of these programs in meeting the LSRCP objectives for mature salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. In order to avoid confusion around whether jacks (age 3) are included with adult metrics, we will use the convention that “adults” include only ages 4 and 5 and “total” or “mature salmon” include all identifiable sexually mature salmon ages 3–5. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 70. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2014 Annual Progress Report

  Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2014. Also summarized ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2014 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2014. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. This report provides information on rearing and release operations for brood year (BY) 2012 of juvenile Chinook Salmon smolts, the collection of eggs for BY 2014, numbers and characteristics (e.g., age composition) of mature Chinook Salmon in the 2014 return year, the 2014 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD) monitoring, and survival information (e.g., SAR, R:S) for BY 2009. These metrics document the success of these programs in meeting the LSRCP objectives for mature salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. In order to avoid confusion around whether jacks (age 3) are included with adult metrics, we will use the convention that “adults” include only ages 4 and 5 and “total” or “mature salmon” include all sexually mature salmon ages 3–5. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2014 Annual Progress Report Abstract -- This annual progress report summarizes spring-summer Chinook Salmon monitoring data collected by ODFW for the Lower Snake River Compensation Plan (LSRCP) facilities in 2014. Also summarized are the associated broodstock monitoring data collected at weirs in the Grande Ronde Basin that are operated by our co-managers, the Nez Perce Tribe (NPT; Lostine River) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR; Catherine Creek and Upper Grande Ronde River). The main objectives of this report are to document and evaluate spring-sumer Chinook Salmon culture performance for hatchery programs and achievement of management objectives in the Imnaha and Grande Ronde river basins (CTUIR and NPT have specific program goals for Chinook returns to Catherine Creek, the Upper Grande Ronde River, Lookingglass Creek, and the Lostine River that are discussed and evaluated in separate reports prepared by each co-management agency). Overall, these data are used to adaptively manage salmon culture practices in order to optimize egg-to-smolt survival rate, smolt quality, smolt-toadult survival rate, the recruits-per-spawner (R:S) ratio, and to monitor spawning in nature by hatchery-reared salmon. This report provides information on rearing and release operations for brood year (BY) 2012 of juvenile Chinook Salmon smolts, the collection of eggs for BY 2014, numbers and characteristics (e.g., age composition) of mature Chinook Salmon in the 2014 return year, the 2014 spawning year at Lookingglass Fish Hatchery and in nature, bacterial kidney disease (BKD) monitoring, and survival information (e.g., SAR, R:S) for BY 2009. These metrics document the success of these programs in meeting the LSRCP objectives for mature salmon returning to the mitigation area above Lower Granite Dam (LGD) and for harvest below LGD. In order to avoid confusion around whether jacks (age 3) are included with adult metrics, we will use the convention that “adults” include only ages 4 and 5 and “total” or “mature salmon” include all sexually mature salmon ages 3–5. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 71. [Article] Umatilla Basin Natural Production Monitoring and Evaluation; Annual Progress Report 1994 - 1995

  Abstract -- This report summarizes the activities of the Umatilla Basin Natural Production Monitoring and Evaluation Project (UBNPME) from September 30, 1994 to September 29, 1995. This program was funded ...

  Citation × Citation Citation Abstract Copy Title: Umatilla Basin Natural Production Monitoring and Evaluation; Annual Progress Report 1994 - 1995 Abstract -- This report summarizes the activities of the Umatilla Basin Natural Production Monitoring and Evaluation Project (UBNPME) from September 30, 1994 to September 29, 1995. This program was funded by Bonneville Power Administration and was managed under the Fisheries Program, Department of Natural Resources, Confederated Tribes of the Umatilla Indian Reservation. An estimated 36.7 km (22.6 miles) of stream habitat were inventoried on the Umatilla River, Moonshine, Mission, Cottonwood and Coonskin Creeks. A total of 384 of 3,652 (10.5%) habitat units were electrofished. The number of juvenile fish captured follows: 2,953 natural summer steelhead (including resident rainbow tout; Oncorhynchus mykiss), one hatchery steelhead, 341 natural chinook salmon (0. tshawytscha), 163 natural coho salmon (0. kisutch), five bull trout (Salvelinus confluentus), 185 mountain whitefish (Prosopium williamsoni), and six northern squawfish (Ptychocheilus oregonensis). The expanded population estimate for the areas surveyed was 73,716 salmonids with a mean density of 0.38 fish/m2. The following number of non-salmonids were visually estimated: 7,572 speckled dace (Rhinichthys osculus), 5,196 sculpin (Cottus spp.), 532 suckers (Catostomus spp.) and 191 redside shiners (Richardsonius balteatus). The gross estimated density of all non-salmonids combined was 0.84 fish/m2. The estimated ratio of non-salmonids to salmonids was 2.4: 1. Relative salmonid abundance, seasonal distribution and habitat utilization were monitored at index sites throughout the basin. During index site monitoring, the following species were collected in addition to those listed above: american shad (Alosa sapidissima), smallmouth bass (Micropterus dolomieu), carp (Cyprinus Carpio) and chiselmouth (Acrocheilus alutaceus). Thirty ­nine sites were electrofished during the spring and summer seasons, while 36 sites were sampled in the fall season. Index sites with the. highest mean salmonid catch/minute (fish/min.) during the three sample periods were located at the following sites: East Birch Creek (3.4 fish/min.), Boston Canyon Creek (3.2 fish/min.), Spring Creek (3.1 fish/min.) and upper Squaw Creek (3.0 fish/min.). The highest electrofishing catch rates were observed in the Umatilla River tributaries above river mile (RM) 70 in the August and September sample period (Table J-2 catalogs river miles with associated landmarks). During the November sample period, catch rates were highest in Birch Creek tributaries. Most salmonids were captured in slow water near the bank during the November and March sampling periods. A study of the migration movements and homing requirements of adult salmonids in the Umatilla River was conducted during the 1994-95 return years. Radio telemetry was used to evaluate the movements of adult salmonids past diversion dams in the lower Umatilla River and to determine migrational movements of salmonids following upstream transport. Radio transmitters were placed in 30 summer steelhead, 15 spring chinook, nine fall chinook, and eight coho salmon. Salmon were released at Three Mile Falls Dam (TMD). An additional 11 summer steelhead and ten spring chinook salmon were tagged, hauled upstream, and released at either Barnhart, Nolin, Thornhollow, or Imeques C-mem-ini-kem. On average, summer steelhead required 36 days to successfully migrate from TMD to Stanfield Dam. Spring chinook required 18 days. Average passage times for summer steelhead (hours and minutes) at Westland, Feed Canal, and Stanfield Dams were 13:06, 83:24, and 2:58, respectively. Spring chinook salmon required 04:30 at Westland, 89:42 at Feed Canal, and 04:01 at Stanfield Dams. Migrational delays were observed at Feed Canal Dam at flows ranging from 563 to 1,601 cubic feet/second (cfs). Thirty-eight percent of the fish ladder at Westland Dam, 75% at Feed canal, and 31% at Stanfield Dam. Average passage times at Feed Canal Dam (1995) were more than 15 times those at Stanfield Dam in 1994 and more than 20 times those at Stanfield Dam in 1995. Data related to homing and passage needs of Umatilla River salmonids was investigated in an attempt to maximize homing to the Umatilla River. Straying rates of adult summer steelhead and spring chinook salmon were found to be low while coho and fall chinook salmon stray rates were high in some groups, particularly adult returns from subyearling smolt releases of fall chinook salmon. Attraction flows of from the mouth of the Umatilla River of at least 150 cfs were required to encourage migration and reduce straying of fall chinook and coho salmon. Significant numbers of summer steelhead entered when flows exceeded 500 cfs. Spring chinook salmon entry was variable with fish entering at flows ranging from 150 to more than 2,000 cfs. Adult anadromous salmonids potentially available to spawn above TMD from August 26, 1994 to June 27, 1995 included: 593 adult and 530 jack fall chinook salmon (1994 brood), 879 adult and 54 jack coho salmon (1994 brood), 784 natural and 509 hatchery summer steelhead (1995 brood), and 378 adult and 62 jack spring chinook salmon (1995 brood). During escapement surveys (fall of 1994), a total of 82 fall chinook salmon redds, 24 coho salmon redds and seven unidentified salmon redds (112 redds total, 2.6/mile) were enumerated along 42.3 miles of the mainstem above TMD. In 1995, we enumerated and flagged 126 summer steelhead redds (3.6 redds/mile) along 35.3 miles of lateral tributaries of the Umatilla River. Also enumerated were 90 spring chinook salmon redds (1.6 redds/mile) along 55.8 miles of the mainstem. Ninety-six percent of the adult fall chinook salmon carcasses examined had spawned while 94% of the coho had spawned; 66.8 % of the spring chinook salmon carcasses examined bad spawned. A total of 49.3% of spring chinook salmon released above TMD were sampled during spawning ground surveys and 60 coded wire tags (CWTs) were recovered from 78 adipose clipped fish. The rotary screw trap in the Umatilla River (RM 76) operated 63 of 113 days from September 21, 1994 to January 13, 1995. The trap captured 596 juvenile steelhead with a mean trap efficiency rate of 9.9%. A total of 1,368 juvenile chinook salmon were captured with a mean trap efficiency rate of 28. 8 % . The rotary screw trap at the Imeques C-mem-ini-kem site (RM 79.5) operated 43 out of 43 days from May 5 through June 16, 1995. The trap captured 304 natural juvenile steelhead with a mean trap efficiency rate of 6.6%. A total of 102 natural juvenile chinook salmon were captured with a mean trap efficiency rate of 10.5%. The rotary screw trap at the Barnhart site (RM 42,2) operated 87 out of 125 days from March 3 to June I, 1995. The trap captured 105 natural juvenile steelhead, 247 natural juvenile chinook salmon, five natural coho salmon, 6,265 hatchery juvenile chinook salmon, 467 hatchery steelhead and 16,844 hatchery coho salmon. Mean trap efficiency rates ranged from 2.3 to 5.7% . Harvest monitors estimated that tribal anglers harvested 25 hatchery and five natural summer steelhead during the spring of 1995. There was no spring chinook salmon fishery in the Umatilla River during 1995 because of the low number of returning adults. Scale analysis determined that over 85 .0% of naturally produced juvenile summer steelhead sampled during biological and index surveys were age O+ or l +. Naturally produced summer steelhead adults, returning to the Umatilla River in 1994-95, were mostly from the 1990 (46.4%) and 1991 (33.9%) brood years. Title: Umatilla Basin Natural Production Monitoring and Evaluation; Annual Progress Report 1994 - 1995 Abstract -- This report summarizes the activities of the Umatilla Basin Natural Production Monitoring and Evaluation Project (UBNPME) from September 30, 1994 to September 29, 1995. This program was funded by Bonneville Power Administration and was managed under the Fisheries Program, Department of Natural Resources, Confederated Tribes of the Umatilla Indian Reservation. An estimated 36.7 km (22.6 miles) of stream habitat were inventoried on the Umatilla River, Moonshine, Mission, Cottonwood and Coonskin Creeks. A total of 384 of 3,652 (10.5%) habitat units were electrofished. The number of juvenile fish captured follows: 2,953 natural summer steelhead (including resident rainbow tout; Oncorhynchus mykiss), one hatchery steelhead, 341 natural chinook salmon (0. tshawytscha), 163 natural coho salmon (0. kisutch), five bull trout (Salvelinus confluentus), 185 mountain whitefish (Prosopium williamsoni), and six northern squawfish (Ptychocheilus oregonensis). The expanded population estimate for the areas surveyed was 73,716 salmonids with a mean density of 0.38 fish/m2. The following number of non-salmonids were visually estimated: 7,572 speckled dace (Rhinichthys osculus), 5,196 sculpin (Cottus spp.), 532 suckers (Catostomus spp.) and 191 redside shiners (Richardsonius balteatus). The gross estimated density of all non-salmonids combined was 0.84 fish/m2. The estimated ratio of non-salmonids to salmonids was 2.4: 1. Relative salmonid abundance, seasonal distribution and habitat utilization were monitored at index sites throughout the basin. During index site monitoring, the following species were collected in addition to those listed above: american shad (Alosa sapidissima), smallmouth bass (Micropterus dolomieu), carp (Cyprinus Carpio) and chiselmouth (Acrocheilus alutaceus). Thirty ­nine sites were electrofished during the spring and summer seasons, while 36 sites were sampled in the fall season. Index sites with the. highest mean salmonid catch/minute (fish/min.) during the three sample periods were located at the following sites: East Birch Creek (3.4 fish/min.), Boston Canyon Creek (3.2 fish/min.), Spring Creek (3.1 fish/min.) and upper Squaw Creek (3.0 fish/min.). The highest electrofishing catch rates were observed in the Umatilla River tributaries above river mile (RM) 70 in the August and September sample period (Table J-2 catalogs river miles with associated landmarks). During the November sample period, catch rates were highest in Birch Creek tributaries. Most salmonids were captured in slow water near the bank during the November and March sampling periods. A study of the migration movements and homing requirements of adult salmonids in the Umatilla River was conducted during the 1994-95 return years. Radio telemetry was used to evaluate the movements of adult salmonids past diversion dams in the lower Umatilla River and to determine migrational movements of salmonids following upstream transport. Radio transmitters were placed in 30 summer steelhead, 15 spring chinook, nine fall chinook, and eight coho salmon. Salmon were released at Three Mile Falls Dam (TMD). An additional 11 summer steelhead and ten spring chinook salmon were tagged, hauled upstream, and released at either Barnhart, Nolin, Thornhollow, or Imeques C-mem-ini-kem. On average, summer steelhead required 36 days to successfully migrate from TMD to Stanfield Dam. Spring chinook required 18 days. Average passage times for summer steelhead (hours and minutes) at Westland, Feed Canal, and Stanfield Dams were 13:06, 83:24, and 2:58, respectively. Spring chinook salmon required 04:30 at Westland, 89:42 at Feed Canal, and 04:01 at Stanfield Dams. Migrational delays were observed at Feed Canal Dam at flows ranging from 563 to 1,601 cubic feet/second (cfs). Thirty-eight percent of the fish ladder at Westland Dam, 75% at Feed canal, and 31% at Stanfield Dam. Average passage times at Feed Canal Dam (1995) were more than 15 times those at Stanfield Dam in 1994 and more than 20 times those at Stanfield Dam in 1995. Data related to homing and passage needs of Umatilla River salmonids was investigated in an attempt to maximize homing to the Umatilla River. Straying rates of adult summer steelhead and spring chinook salmon were found to be low while coho and fall chinook salmon stray rates were high in some groups, particularly adult returns from subyearling smolt releases of fall chinook salmon. Attraction flows of from the mouth of the Umatilla River of at least 150 cfs were required to encourage migration and reduce straying of fall chinook and coho salmon. Significant numbers of summer steelhead entered when flows exceeded 500 cfs. Spring chinook salmon entry was variable with fish entering at flows ranging from 150 to more than 2,000 cfs. Adult anadromous salmonids potentially available to spawn above TMD from August 26, 1994 to June 27, 1995 included: 593 adult and 530 jack fall chinook salmon (1994 brood), 879 adult and 54 jack coho salmon (1994 brood), 784 natural and 509 hatchery summer steelhead (1995 brood), and 378 adult and 62 jack spring chinook salmon (1995 brood). During escapement surveys (fall of 1994), a total of 82 fall chinook salmon redds, 24 coho salmon redds and seven unidentified salmon redds (112 redds total, 2.6/mile) were enumerated along 42.3 miles of the mainstem above TMD. In 1995, we enumerated and flagged 126 summer steelhead redds (3.6 redds/mile) along 35.3 miles of lateral tributaries of the Umatilla River. Also enumerated were 90 spring chinook salmon redds (1.6 redds/mile) along 55.8 miles of the mainstem. Ninety-six percent of the adult fall chinook salmon carcasses examined had spawned while 94% of the coho had spawned; 66.8 % of the spring chinook salmon carcasses examined bad spawned. A total of 49.3% of spring chinook salmon released above TMD were sampled during spawning ground surveys and 60 coded wire tags (CWTs) were recovered from 78 adipose clipped fish. The rotary screw trap in the Umatilla River (RM 76) operated 63 of 113 days from September 21, 1994 to January 13, 1995. The trap captured 596 juvenile steelhead with a mean trap efficiency rate of 9.9%. A total of 1,368 juvenile chinook salmon were captured with a mean trap efficiency rate of 28. 8 % . The rotary screw trap at the Imeques C-mem-ini-kem site (RM 79.5) operated 43 out of 43 days from May 5 through June 16, 1995. The trap captured 304 natural juvenile steelhead with a mean trap efficiency rate of 6.6%. A total of 102 natural juvenile chinook salmon were captured with a mean trap efficiency rate of 10.5%. The rotary screw trap at the Barnhart site (RM 42,2) operated 87 out of 125 days from March 3 to June I, 1995. The trap captured 105 natural juvenile steelhead, 247 natural juvenile chinook salmon, five natural coho salmon, 6,265 hatchery juvenile chinook salmon, 467 hatchery steelhead and 16,844 hatchery coho salmon. Mean trap efficiency rates ranged from 2.3 to 5.7% . Harvest monitors estimated that tribal anglers harvested 25 hatchery and five natural summer steelhead during the spring of 1995. There was no spring chinook salmon fishery in the Umatilla River during 1995 because of the low number of returning adults. Scale analysis determined that over 85 .0% of naturally produced juvenile summer steelhead sampled during biological and index surveys were age O+ or l +. Naturally produced summer steelhead adults, returning to the Umatilla River in 1994-95, were mostly from the 1990 (46.4%) and 1991 (33.9%) brood years. Close

• 72. [Article] Effectiveness Monitoring Report for the Western Oregon Stream Restoration Program, 1999-2008 Report Number: OPSW-ODFW-2010-6

  Abstract -- State and federal agencies have invested millions of dollars to restore streams and watersheds in the Pacific Northwest over the past two decades. In Oregon alone, over 500 million dollars ...

  Citation × Citation Citation Abstract Copy Title: Effectiveness Monitoring Report for the Western Oregon Stream Restoration Program, 1999-2008 Report Number: OPSW-ODFW-2010-6 Abstract -- State and federal agencies have invested millions of dollars to restore streams and watersheds in the Pacific Northwest over the past two decades. In Oregon alone, over 500 million dollars has been spent on completed projects from 1995 to 2007 (Oregon Watershed Enhancement Board 2009). Restoration practitioners have distributed the investment among watershed scale activities such as road repair, dam removal, and upland management, and stream scale activities such as passage, instream complexity, and riparian plantings. The Western Oregon Stream Restoration Program (WOSRP) was established to work in cooperation with private and corporate landowners to restore stream habitat for juvenile and adult salmonids. In addition to the WOSRP, the Oregon Watershed Enhancement Board (OWEB) funds restoration projects with local watershed councils, who commonly partner with state and federal agencies. Eight WOSRP restoration biologists in Tillamook, Newport, Charleston, Gold Beach, Roseburg, Clackamas, and Salem select sites and implement projects consistent with the criteria described in Thom et al (2001). A monitoring component is integrated in the program, with surveys coordinated and reported by a biologist in Corvallis. The goal of the monitoring program is to assess the long term effectiveness of instream restoration projects implemented by WOSRP, and to evaluate progress towards salmon conservation and recovery goals in Oregon’s coastal basins. The WOSRP restoration sites are distributed throughout the Willamette, Lower Columbia, and coastal drainage's. Restoration treatments added large wood and/or boulders, improved fish passage, planted trees in riparian areas, or were a combination of the three. Large wood was placed in complex jams at intervals throughout the stream to increase stream roughness and complexity. Boulders were sometimes used in conjunction with wood jams to provide stability to the structures, and prevent large wood from moving downstream and posing a hazard to culverts and bridges. Bedrock dominated streams were often treated with boulders to collect gravel and cobble, intended to aggrade the streambed. In the future, large wood may be added to these streams. Fish passage projects opened previously inaccessible habitat to juvenile and/or adult salmonids while riparian plantings and fencing were designed to improve riparian vegetation and bank structure. The project length varied from site to site. Fish passage sites were quite short, but provided access to kilometers of fish habitat, and large wood sites were up to several kilometers in length. Large wood and boulder placement projects have become commonplace in the Pacific Northwest to restore complex stream habitat for juvenile coho and other salmonids (Katz et al. 2007, Roni et al. 2008). Detailed assessments have been published for individual projects or experiments (e.g. Moore and Gregory, 1988, Nickelson et al. 1992, Cederholm et al.1997). More extensive evaluations have used a post treatment design (Hicks et al 1991, Roni and Quinn 2001), but none have used a pre- and post treatment design. In this paper we evaluate habitat changes at 103 restoration projects in western Oregon from pre-treatment to one year post treatment to 6 years following treatment. Projects commonly treated 0.5 – 1 km of stream, but some extended up to 6 km. The projects we evaluated in this paper were treated with large logs, usually arranged in jams, and were not cabled or driven into banks or bottom. As of 2008, the OWEB and WOSRP projects have treated approximately 750 km of stream with large wood (Figure 1), 120 km with boulders, and over 4,000 km of stream have been made accessible by replacing and/or removing culverts. Each year, OWEB receives 210 grant applications for restoration projects. These projects generally adhere to a similar selection process and design, so the results of this study can be expected to apply more broadly within the Pacific Northwest. Roni et al (2008), in a synthesis paper, summarized many of the potential physical benefits of restoration; these include pool depth and frequency, habitat complexity, woody debris, and sediment retention and quality of spawning gravel. Some projects in deeply incised channels have reduced the incision and increased bed elevation. Evaluations of biological responses have been confounded by natural variability of populations, duration of study, or length of stream examined. For example, determination of success based on spawning ground counts is problematic because of variation in ocean survival. However, longer duration and watershed scale studies have shown positive responses of juvenile and adult salmon (Johnson et al 2005). Burnett et al. (2008) conducted a systematic review of peer-reviewed articles to examine the effects of large wood placement on salmonid abundance, growth, or survival, or on overall stream habitat complexity. Few publications were both relevant and met the rigorous standards outlined in their review. Although the review supported short term improvements in habitat complexity, the relationship to salmonid productivity was less definitive. Notable exceptions included Johnson et al. (2005) cited above, and Solazzi et al. (2000). An alternative approach to directly assessing biological response is to model potential changes in abundance or productivity. The Habitat Limiting Factors Model (Reeves et al. 1989, Nickelson et al.1992a, Nickelson 1998) was developed to quantify the carrying capacity of coastal streams for juvenile coho during the summer and winter. Use of this model is appropriate because most of the instream restoration projects in western Oregon were intended to improve habitat for juvenile coho. In this paper, we evaluated the physical response directly, and quantified the potential response of juvenile coho salmon by application of the Habitat Limiting Factors Model. Project effectiveness monitoring requires linking the restoration treatment to improved physical conditions for and biological response of salmon (Katz et al. 2007) and defining desired outcomes (Rumps et al. 2007). Because the WOSRP projects were designed to improve ecological and hydrologic stream function specifically for salmonids, we evaluated 1) retention of wood structures, 2) natural recruitment of additional wood, 3) increase in pool number, area, and depth, 4) retention of gravels and sorting of finer substrates, and 5) increase in channel complexity – secondary channels and off-channel habitats. Biological evaluation was based on estimates of the potential carrying capacity for juvenile coho during the overwinter life stage. The primary objectives of this evaluation are to test for these changes one year following treatment and 6 years following treatment. Secondarily, we evaluated the response of the projects by geographic location and position along the stream network. Previous WOSRP monitoring reports (e.g. Jacobsen and Jones 2003, Jacobsen et al. 2007) have focused on conditions one year following treatment, with relatively few sites assessed 2-3 years following restoration. Since 2003, the restoration projects have increased in complexity – more and larger pieces and jams, and treated more kilometers of stream length per site. The WOSRP program has provided a unique opportunity to evaluate the effects of restoration projects over longer times and broader geographic scales than previously feasible. We have been surveying the restoration sites in both summer and winter to monitor changes in stream habitat and evaluate the success of treatments, such as the placement of wood and/or boulders and fish passage. Surveys are logistically easier to manage in the summer, but surveys conducted during the winter provide a more timely and accurate assessment of over-winter rearing potential for juvenile coho. Because we have paired surveys, we are able to assess the added value of revisits across seasons. We test the hypothesis that habitat characteristics at the restoration sites do not change from summer to winter. The findings permit us to modify the survey program if the information is duplicative, and use the resources in another fashion. Title: Effectiveness Monitoring Report for the Western Oregon Stream Restoration Program, 1999-2008 Report Number: OPSW-ODFW-2010-6 Abstract -- State and federal agencies have invested millions of dollars to restore streams and watersheds in the Pacific Northwest over the past two decades. In Oregon alone, over 500 million dollars has been spent on completed projects from 1995 to 2007 (Oregon Watershed Enhancement Board 2009). Restoration practitioners have distributed the investment among watershed scale activities such as road repair, dam removal, and upland management, and stream scale activities such as passage, instream complexity, and riparian plantings. The Western Oregon Stream Restoration Program (WOSRP) was established to work in cooperation with private and corporate landowners to restore stream habitat for juvenile and adult salmonids. In addition to the WOSRP, the Oregon Watershed Enhancement Board (OWEB) funds restoration projects with local watershed councils, who commonly partner with state and federal agencies. Eight WOSRP restoration biologists in Tillamook, Newport, Charleston, Gold Beach, Roseburg, Clackamas, and Salem select sites and implement projects consistent with the criteria described in Thom et al (2001). A monitoring component is integrated in the program, with surveys coordinated and reported by a biologist in Corvallis. The goal of the monitoring program is to assess the long term effectiveness of instream restoration projects implemented by WOSRP, and to evaluate progress towards salmon conservation and recovery goals in Oregon’s coastal basins. The WOSRP restoration sites are distributed throughout the Willamette, Lower Columbia, and coastal drainage's. Restoration treatments added large wood and/or boulders, improved fish passage, planted trees in riparian areas, or were a combination of the three. Large wood was placed in complex jams at intervals throughout the stream to increase stream roughness and complexity. Boulders were sometimes used in conjunction with wood jams to provide stability to the structures, and prevent large wood from moving downstream and posing a hazard to culverts and bridges. Bedrock dominated streams were often treated with boulders to collect gravel and cobble, intended to aggrade the streambed. In the future, large wood may be added to these streams. Fish passage projects opened previously inaccessible habitat to juvenile and/or adult salmonids while riparian plantings and fencing were designed to improve riparian vegetation and bank structure. The project length varied from site to site. Fish passage sites were quite short, but provided access to kilometers of fish habitat, and large wood sites were up to several kilometers in length. Large wood and boulder placement projects have become commonplace in the Pacific Northwest to restore complex stream habitat for juvenile coho and other salmonids (Katz et al. 2007, Roni et al. 2008). Detailed assessments have been published for individual projects or experiments (e.g. Moore and Gregory, 1988, Nickelson et al. 1992, Cederholm et al.1997). More extensive evaluations have used a post treatment design (Hicks et al 1991, Roni and Quinn 2001), but none have used a pre- and post treatment design. In this paper we evaluate habitat changes at 103 restoration projects in western Oregon from pre-treatment to one year post treatment to 6 years following treatment. Projects commonly treated 0.5 – 1 km of stream, but some extended up to 6 km. The projects we evaluated in this paper were treated with large logs, usually arranged in jams, and were not cabled or driven into banks or bottom. As of 2008, the OWEB and WOSRP projects have treated approximately 750 km of stream with large wood (Figure 1), 120 km with boulders, and over 4,000 km of stream have been made accessible by replacing and/or removing culverts. Each year, OWEB receives 210 grant applications for restoration projects. These projects generally adhere to a similar selection process and design, so the results of this study can be expected to apply more broadly within the Pacific Northwest. Roni et al (2008), in a synthesis paper, summarized many of the potential physical benefits of restoration; these include pool depth and frequency, habitat complexity, woody debris, and sediment retention and quality of spawning gravel. Some projects in deeply incised channels have reduced the incision and increased bed elevation. Evaluations of biological responses have been confounded by natural variability of populations, duration of study, or length of stream examined. For example, determination of success based on spawning ground counts is problematic because of variation in ocean survival. However, longer duration and watershed scale studies have shown positive responses of juvenile and adult salmon (Johnson et al 2005). Burnett et al. (2008) conducted a systematic review of peer-reviewed articles to examine the effects of large wood placement on salmonid abundance, growth, or survival, or on overall stream habitat complexity. Few publications were both relevant and met the rigorous standards outlined in their review. Although the review supported short term improvements in habitat complexity, the relationship to salmonid productivity was less definitive. Notable exceptions included Johnson et al. (2005) cited above, and Solazzi et al. (2000). An alternative approach to directly assessing biological response is to model potential changes in abundance or productivity. The Habitat Limiting Factors Model (Reeves et al. 1989, Nickelson et al.1992a, Nickelson 1998) was developed to quantify the carrying capacity of coastal streams for juvenile coho during the summer and winter. Use of this model is appropriate because most of the instream restoration projects in western Oregon were intended to improve habitat for juvenile coho. In this paper, we evaluated the physical response directly, and quantified the potential response of juvenile coho salmon by application of the Habitat Limiting Factors Model. Project effectiveness monitoring requires linking the restoration treatment to improved physical conditions for and biological response of salmon (Katz et al. 2007) and defining desired outcomes (Rumps et al. 2007). Because the WOSRP projects were designed to improve ecological and hydrologic stream function specifically for salmonids, we evaluated 1) retention of wood structures, 2) natural recruitment of additional wood, 3) increase in pool number, area, and depth, 4) retention of gravels and sorting of finer substrates, and 5) increase in channel complexity – secondary channels and off-channel habitats. Biological evaluation was based on estimates of the potential carrying capacity for juvenile coho during the overwinter life stage. The primary objectives of this evaluation are to test for these changes one year following treatment and 6 years following treatment. Secondarily, we evaluated the response of the projects by geographic location and position along the stream network. Previous WOSRP monitoring reports (e.g. Jacobsen and Jones 2003, Jacobsen et al. 2007) have focused on conditions one year following treatment, with relatively few sites assessed 2-3 years following restoration. Since 2003, the restoration projects have increased in complexity – more and larger pieces and jams, and treated more kilometers of stream length per site. The WOSRP program has provided a unique opportunity to evaluate the effects of restoration projects over longer times and broader geographic scales than previously feasible. We have been surveying the restoration sites in both summer and winter to monitor changes in stream habitat and evaluate the success of treatments, such as the placement of wood and/or boulders and fish passage. Surveys are logistically easier to manage in the summer, but surveys conducted during the winter provide a more timely and accurate assessment of over-winter rearing potential for juvenile coho. Because we have paired surveys, we are able to assess the added value of revisits across seasons. We test the hypothesis that habitat characteristics at the restoration sites do not change from summer to winter. The findings permit us to modify the survey program if the information is duplicative, and use the resources in another fashion. Close

• 73. [Article] Abundance, distribution, and migratory behavior of coastal cutthroat trout in two lower Columbia River tributaries

  Abstract -- Coastal cutthroat trout (Oncorhynchus clarki clarki) exhibit multiple life history types characterized by diverse migratory strategies, including anadromous, potomodromous, and freshwater resident ...

  Citation × Citation Citation Abstract Copy Title: Abundance, distribution, and migratory behavior of coastal cutthroat trout in two lower Columbia River tributaries Abstract -- Coastal cutthroat trout (Oncorhynchus clarki clarki) exhibit multiple life history types characterized by diverse migratory strategies, including anadromous, potomodromous, and freshwater resident forms. The factors contributing to life history variation within populations are not well understood, but probably are not strictly genetic (e.g. Johnson et al, in review). Variation in migration tendency within cutthroat populations may result from phenotype plasticity, influenced by density, frequency, or condition dependent processes (Hendry et al. 2004). For example, an individual cutthroat’s choice to migrate at a given time or age may be a response to environmental conditions mediated by a genetically determined reaction norm (Hutchings 2004). This report summarizes a study undertaken to describe the expression of migratory behavior within coastal cutthroat trout populations, the relationship among migratory and non-migratory individuals, and the implications of life history diversity for management of cutthroat trout in tributaries of the lower Columbia River. The relationship between resident and migratory populations (or resident and migratory individuals within populations) is of central importance for management of coastal cutthroat trout. In the lower Columbia River and southwest Washington State a proposed rule to list anadromous cutthroat as threatened under the federal Endangered Species Act (ESA) was withdrawn after the US Fish and Wildlife Service (USFWS) decided during its review process to include resident and anadromous forms in the same Distinct Population Segment (DPS). Debate over proposed ESA listing highlighted a general lack of knowledge about coastal cutthroat trout life history, relationships between resident and migratory forms, and estuarine habitat use in the lower Columbia River. In 2009, the decision not to list the DPS as threatened was remanded to the USFWS on the grounds that the Service had not adequately considered whether marine and estuarine habitats formed a significant portion of the range of the DPS (USFWS 2009). We evaluated the distribution and abundance of coastal cutthroat trout in Big Creek and Bear Creek, two tributaries that join the Columbia River estuary from the south (Oregon) side roughly 30 kilometers from the ocean, and monitored the migratory behavior of cutthroat that emigrated from these streams and entered the Columbia River estuary. Big Creek is an interesting system because a fish weir and diversion dam at an ODFW hatchery, established in 1941 and refurbished in 1957, prevent cutthroat trout from passing upstream, isolating the cutthroat spawning population above the hatchery. Despite this barrier to upstream migration, offspring of resident cutthroat in the upper watershed continue to “smolt” and migrate downstream past the barrier. We were interested in the fate of these fish and their contribution to the adult population. Bear Creek, on the other hand, has always had full access for anadromous cutthroat through much of its drainage. These two systems permit a comparison of life history characteristics, migration, and survival of coastal cutthroat rearing in streams above and below migration barriers, and provide study sites in Oregon to compliment research by USFWS of coastal cutthroat migration behavior in tributaries entering the estuary from the north side of the Columbia River (USFWS 2008; and see Hudson et al. 2008; Johnson 2008; Zydlewski et al. 2008). A major objective of our work in Big Creek and Bear Creek was to increase understanding of coastal cutthroat trout biology and the relationship between resident and migratory cutthroat in lower Columbia tributaries. Additionally, we sought to document habitat use in the Columbia River estuary by migrant cutthroat. Our specific objectives were to: • Estimate abundance of coastal cutthroat trout in Big Creek (above hatchery barrier) and Bear Creek (above and below a large dam) • Quantify the proportions of the cutthroat populations that are migratory, identify which individuals migrate and describe the timing of migration • Describe habitats used by anadromous migrants and characterize migration behavior within the Columbia River estuary • Measure estuarine/marine survival of anadromous individuals and document return to natal streams Title: Abundance, distribution, and migratory behavior of coastal cutthroat trout in two lower Columbia River tributaries Abstract -- Coastal cutthroat trout (Oncorhynchus clarki clarki) exhibit multiple life history types characterized by diverse migratory strategies, including anadromous, potomodromous, and freshwater resident forms. The factors contributing to life history variation within populations are not well understood, but probably are not strictly genetic (e.g. Johnson et al, in review). Variation in migration tendency within cutthroat populations may result from phenotype plasticity, influenced by density, frequency, or condition dependent processes (Hendry et al. 2004). For example, an individual cutthroat’s choice to migrate at a given time or age may be a response to environmental conditions mediated by a genetically determined reaction norm (Hutchings 2004). This report summarizes a study undertaken to describe the expression of migratory behavior within coastal cutthroat trout populations, the relationship among migratory and non-migratory individuals, and the implications of life history diversity for management of cutthroat trout in tributaries of the lower Columbia River. The relationship between resident and migratory populations (or resident and migratory individuals within populations) is of central importance for management of coastal cutthroat trout. In the lower Columbia River and southwest Washington State a proposed rule to list anadromous cutthroat as threatened under the federal Endangered Species Act (ESA) was withdrawn after the US Fish and Wildlife Service (USFWS) decided during its review process to include resident and anadromous forms in the same Distinct Population Segment (DPS). Debate over proposed ESA listing highlighted a general lack of knowledge about coastal cutthroat trout life history, relationships between resident and migratory forms, and estuarine habitat use in the lower Columbia River. In 2009, the decision not to list the DPS as threatened was remanded to the USFWS on the grounds that the Service had not adequately considered whether marine and estuarine habitats formed a significant portion of the range of the DPS (USFWS 2009). We evaluated the distribution and abundance of coastal cutthroat trout in Big Creek and Bear Creek, two tributaries that join the Columbia River estuary from the south (Oregon) side roughly 30 kilometers from the ocean, and monitored the migratory behavior of cutthroat that emigrated from these streams and entered the Columbia River estuary. Big Creek is an interesting system because a fish weir and diversion dam at an ODFW hatchery, established in 1941 and refurbished in 1957, prevent cutthroat trout from passing upstream, isolating the cutthroat spawning population above the hatchery. Despite this barrier to upstream migration, offspring of resident cutthroat in the upper watershed continue to “smolt” and migrate downstream past the barrier. We were interested in the fate of these fish and their contribution to the adult population. Bear Creek, on the other hand, has always had full access for anadromous cutthroat through much of its drainage. These two systems permit a comparison of life history characteristics, migration, and survival of coastal cutthroat rearing in streams above and below migration barriers, and provide study sites in Oregon to compliment research by USFWS of coastal cutthroat migration behavior in tributaries entering the estuary from the north side of the Columbia River (USFWS 2008; and see Hudson et al. 2008; Johnson 2008; Zydlewski et al. 2008). A major objective of our work in Big Creek and Bear Creek was to increase understanding of coastal cutthroat trout biology and the relationship between resident and migratory cutthroat in lower Columbia tributaries. Additionally, we sought to document habitat use in the Columbia River estuary by migrant cutthroat. Our specific objectives were to: • Estimate abundance of coastal cutthroat trout in Big Creek (above hatchery barrier) and Bear Creek (above and below a large dam) • Quantify the proportions of the cutthroat populations that are migratory, identify which individuals migrate and describe the timing of migration • Describe habitats used by anadromous migrants and characterize migration behavior within the Columbia River estuary • Measure estuarine/marine survival of anadromous individuals and document return to natal streams Close