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• 3591. [Article] The physiology ecology and run diversity of adult Pacific lamprey, Entosphenus tridentatus, during the freshwater spawning migration

  Pacific lamprey, Entosphenus tridentatus, have shown recent and rapid declines in abundance. These anadromous fish return to streams where they mature, spawn and die. It has been inferred that Pacific ...

  Citation × Citation Citation Abstract Copy Title: The physiology ecology and run diversity of adult Pacific lamprey, Entosphenus tridentatus, during the freshwater spawning migration Author: Clemens, Benjamin Jacob, 1976- Pacific lamprey, Entosphenus tridentatus, have shown recent and rapid declines in abundance. These anadromous fish return to streams where they mature, spawn and die. It has been inferred that Pacific lamprey enter freshwater and reside for ~ 1 year before spawning. This long exposure to the freshwater environment may affect the plasticity of the maturation process and the migration timing of Pacific lamprey. Diversity in run times and body size has been observed for Pacific lamprey, yet it is unknown if this diversity is induced by the freshwater environment or if it is genetic. My first goal was to describe the maturation and migration characteristics of adult Pacific lamprey during their freshwater migration. My second goal was to use these data to make an estimation of the run diversity in Pacific lamprey. I conducted three complementary studies, in the laboratory and the field, to achieve these goals. I held immature adult lamprey (non-ripe fish that had ceased parasitic feeding in the ocean and had returned to freshwater) in the laboratory at temperatures that mimicked what these fish would experience in the wild, during the summer (mean: 21.8 °C), and another group of lamprey at cooler temperature (mean: 13.6 °C) to compare maturation timing and characteristics. The warm water group of lamprey showed significantly greater proportional decreases in body mass following temperature exposure than fish in the cooler water. All fish exposed to the warm water matured the following spring (8-10 months later) whereas only about half of the fish from the cool water exposure matured. To understand the migration distances and timing of adult Pacific lamprey, I tracked radio-tagged fish throughout the Willamette Basin above Willamette Falls, Oregon, by airplane and recorded their location. Fish migrated primarily during the spring to early summer period before stopping during the remainder of summer, when peak river temperatures (≥ 20°C) occurred. These fish tended to remain stationary through the fall and winter. However, at least a few fish continued to migrate upstream after September. I monitored maturation characteristics of adult Pacific lamprey, over time at Willamette Falls, Oregon and compared these fish with recent migrants collected from the Pacific Ocean as they entered freshwater. The results suggest a unimodal spawn timing between April and June, at water temperatures < 20 °C. Between July and mid-September, as water temperatures peaked at ~ 25 °C, relatively immature fish for both sexes prevailed. Warm summer temperatures coincided with an increase and prevalence of testicular atrophy in males, and I also observed a large die-off of lamprey during this time. The immature fish had maturation stages and phenotypic characteristics similar to recent migrants collected at the mouth of the Klamath River, suggesting that the immature fish at Willamette Falls would spawn the following year, and spawners in any given year may have been recent migrants during the previous year. However there is a temporal overlap in the spring of immature and mature fish, and I found evidence from gonad histology of maturing fish as they entered the river from the ocean, suggesting that a cohort is comprised of recent migrants that spawn within several weeks of entering freshwater, and another cohort is comprised of recent migrants that mature and spawn at least 1 year later. I hypothesize that the recent migrants that would likely spawn shortly after entering freshwater are akin to a winter or "ocean maturing" steelhead, Oncorhynchus mykiss, that optimizes feeding and growth in the open ocean for a few years before entering freshwater to spawn low in the river system shortly afterwards. Alternatively, these lamprey may be similar to coastal cutthroat trout, O. clarki clarki, that feed and grow in the coastal areas of the ocean for a few months before entering freshwater to spawn. There could be other less apparent explanations as well. I also hypothesize that the lamprey that would likely spawn within ~ 1 year of entering freshwater are akin to a "stream maturing" steelhead that foregoes feeding and growth opportunities, enters freshwater during the summer – fall, and accesses spawning grounds to spawn at temperatures that promote evolutionary fitness via successful spawning the following spring. Based on the results of my research, I hypothesize that warm summer temperatures (> 20 °C) can act as a strong selection factor against stream maturing Pacific lamprey in two ways. First, these temperatures may expedite their maturation, while at the same time slowing their migration. If these hypotheses are true, then I predict an uncoupling of spawn timing with optimal habitat characteristics, that would promote fitness, in the upper watershed. Second, summer temperatures may cause gonad atrophy and death prior to spawning. This scenario may select for ocean maturing Pacific lamprey. Title: The physiology ecology and run diversity of adult Pacific lamprey, Entosphenus tridentatus, during the freshwater spawning migration Author: Clemens, Benjamin Jacob, 1976- Pacific lamprey, Entosphenus tridentatus, have shown recent and rapid declines in abundance. These anadromous fish return to streams where they mature, spawn and die. It has been inferred that Pacific lamprey enter freshwater and reside for ~ 1 year before spawning. This long exposure to the freshwater environment may affect the plasticity of the maturation process and the migration timing of Pacific lamprey. Diversity in run times and body size has been observed for Pacific lamprey, yet it is unknown if this diversity is induced by the freshwater environment or if it is genetic. My first goal was to describe the maturation and migration characteristics of adult Pacific lamprey during their freshwater migration. My second goal was to use these data to make an estimation of the run diversity in Pacific lamprey. I conducted three complementary studies, in the laboratory and the field, to achieve these goals. I held immature adult lamprey (non-ripe fish that had ceased parasitic feeding in the ocean and had returned to freshwater) in the laboratory at temperatures that mimicked what these fish would experience in the wild, during the summer (mean: 21.8 °C), and another group of lamprey at cooler temperature (mean: 13.6 °C) to compare maturation timing and characteristics. The warm water group of lamprey showed significantly greater proportional decreases in body mass following temperature exposure than fish in the cooler water. All fish exposed to the warm water matured the following spring (8-10 months later) whereas only about half of the fish from the cool water exposure matured. To understand the migration distances and timing of adult Pacific lamprey, I tracked radio-tagged fish throughout the Willamette Basin above Willamette Falls, Oregon, by airplane and recorded their location. Fish migrated primarily during the spring to early summer period before stopping during the remainder of summer, when peak river temperatures (≥ 20°C) occurred. These fish tended to remain stationary through the fall and winter. However, at least a few fish continued to migrate upstream after September. I monitored maturation characteristics of adult Pacific lamprey, over time at Willamette Falls, Oregon and compared these fish with recent migrants collected from the Pacific Ocean as they entered freshwater. The results suggest a unimodal spawn timing between April and June, at water temperatures < 20 °C. Between July and mid-September, as water temperatures peaked at ~ 25 °C, relatively immature fish for both sexes prevailed. Warm summer temperatures coincided with an increase and prevalence of testicular atrophy in males, and I also observed a large die-off of lamprey during this time. The immature fish had maturation stages and phenotypic characteristics similar to recent migrants collected at the mouth of the Klamath River, suggesting that the immature fish at Willamette Falls would spawn the following year, and spawners in any given year may have been recent migrants during the previous year. However there is a temporal overlap in the spring of immature and mature fish, and I found evidence from gonad histology of maturing fish as they entered the river from the ocean, suggesting that a cohort is comprised of recent migrants that spawn within several weeks of entering freshwater, and another cohort is comprised of recent migrants that mature and spawn at least 1 year later. I hypothesize that the recent migrants that would likely spawn shortly after entering freshwater are akin to a winter or "ocean maturing" steelhead, Oncorhynchus mykiss, that optimizes feeding and growth in the open ocean for a few years before entering freshwater to spawn low in the river system shortly afterwards. Alternatively, these lamprey may be similar to coastal cutthroat trout, O. clarki clarki, that feed and grow in the coastal areas of the ocean for a few months before entering freshwater to spawn. There could be other less apparent explanations as well. I also hypothesize that the lamprey that would likely spawn within ~ 1 year of entering freshwater are akin to a "stream maturing" steelhead that foregoes feeding and growth opportunities, enters freshwater during the summer – fall, and accesses spawning grounds to spawn at temperatures that promote evolutionary fitness via successful spawning the following spring. Based on the results of my research, I hypothesize that warm summer temperatures (> 20 °C) can act as a strong selection factor against stream maturing Pacific lamprey in two ways. First, these temperatures may expedite their maturation, while at the same time slowing their migration. If these hypotheses are true, then I predict an uncoupling of spawn timing with optimal habitat characteristics, that would promote fitness, in the upper watershed. Second, summer temperatures may cause gonad atrophy and death prior to spawning. This scenario may select for ocean maturing Pacific lamprey. Close

• 3592. [Article] Cruise ship disturbance to Kittlitz's murrelets (Brachyramphus brevirostris) in Glacier Bay National Park and Preserve, Alaska

  The Kittlitz's murrelet (Brachyramphus brevirostris), a small pursuit-diving seabird in the family Alcidae, occurs across much of coastal Alaska and parts of the Russian Far East. Glacier Bay National ...

  Citation × Citation Citation Abstract Copy Title: Cruise ship disturbance to Kittlitz's murrelets (Brachyramphus brevirostris) in Glacier Bay National Park and Preserve, Alaska Author: Marcella, Timothy K. The Kittlitz's murrelet (Brachyramphus brevirostris), a small pursuit-diving seabird in the family Alcidae, occurs across much of coastal Alaska and parts of the Russian Far East. Glacier Bay National Park, located in Southeast Alaska, is believed to support approximately 37% of the worldwide breeding population of Kittlitz's murrelets during the summer months. Recent concern over apparent population declines in Alaska, coupled with the Park's dual mandate of resource preservation and visitation, led to this study. Cruise ships, although not the most numerous vessel type operating in Glacier Bay, have previously been identified as the vessel type eliciting the greatest disturbance response from Kittlitz's murrelets. During the murrelet breeding seasons in 2011 and 2012, my field assistants and I collected focal observations of 4,251 Brachyramphus murrelets from the bow of cruise ships traveling through Glacier Bay. Identification of murrelets to species was hampered by both the distance at which murrelets responded to the approaching ship and the type of response to the ship (diving vs. flushing). For roughly 40% of focal observations of murrelets from cruise ships, the species of murrelet (Kittlitz's murrelet or marbled murrelet [B. marmoratus]) could not be identified. Apparent habitat partitioning by the two murrelet species in Glacier Bay resulted in 79% of identified murrelets in the upper section of the Bay (Upper Bay) being Kittlitz's murrelets, while 83% of identified murrelets in the lower section of the Bay (Lower Bay) were marbled murrelets. In the Upper Bay, cruise ships are predicted to disturb 61% of all murrelets within 850 m on either side of the cruise ship's course (i.e., elicited a flushing or diving response), whereas in the Lower Bay, cruise ships are predicted to disturb 72% of murrelets within 850 m of the ship's course. Using Cox multistate models, I demonstrated that murrelets in the Upper Bay (predominantly Kittlitz's murrelets) were more likely to dive than flush in response to approaching cruise ships, whereas murrelets in the Lower Bay (predominantly marbled murrelets) were more likely to flush than dive. Also, murrelets in the Upper Bay responded to cruise ships by flushing or diving at shorter distances from the ship compared to murrelets in the Lower Bay. Murrelets in both areas of Glacier Bay generally reacted to cruise ships at greater distances when the ship approached indirectly, presumably because of the larger profile presented by a passing ship as opposed to a directly advancing ship. Absolute distance of the cruise ship from a focal murrelet was a strong predictor of murrelet disturbance response; no other management-relevant covariates that were measured during this study (e.g., ship velocity, distance to shore, whether a cruise ship had entered the Bay earlier that day) explained a significant proportion of the variation in murrelet response. Inferences based on data collected on-board cruise ships were limited to murrelet disturbance responses that occurred within 1 km of the ship. This was because of limits to the distance from the ship at which behavioral responses could be observed and the a priori assumption that disturbance to murrelets by cruise ships was unlikely at distances greater than 1 km. Results from shipboard observations indicated that some proportion of murrelets encountered at the farthest distance we could make inferences were on occasion disturbed (point estimate at 850 m perpendicular distance from ship's course = 15-30% probability of flushing or diving). This suggests that disturbance of murrelets by cruise ships in Glacier Bay exceeded expected distance thresholds. In order to investigate the effects of cruise ships on murrelet behavior at distances greater than 1 km, my assistants and I collected a total of 643 focal observations of Kittlitz's murrelets during 181 hours of observation from land-based observation sites in the Upper Bay during the 2012 field season. By combining these data with AIS and GPS ship tracks, I was able to append distance to the nearest cruise ship to each focal murrelet observation and search for patterns in murrelet behavior. By collecting data in this manner, I was able to avoid biasing the study based on pre-conceived notions of what constituted a threshold distance for cruise ships to disturb Kittlitz's murrelets. Using a segmented regression model within a logistic regression framework, I found that Kittlitz's murrelets exhibited a disturbance threshold (defined as an increased incidence of flushing from the water) by cruise ships at distances of at least 1.6 km, and perhaps as great as 6.0 km, with a best estimate of threshold disturbance distance at 3.8 km from a cruise ship. When cruise ships were greater than 3.8 km from focal Kittlitz's murrelets, the baseline probability of murrelets flushing during a focal observation period was 12.5%. When cruise ships were less than 3.8 km from focal Kittlitz's murrelets, the probability of flushing increased logistically with decreasing distance to an estimated 48% for the closest approach distances. The unexpectedly long distances at which murrelet behavior was affected by cruise ships in Glacier Bay is most likely attributable to social facilitation by other disturbed murrelets, because similar numbers of murrelets flushed when cruise ships were approaching (n = 30) as when they were receding (n = 27). Once a Kittlitz's murrelet flushed from the water, the subsequent duration of flight did not vary with distance to the nearest cruise ship. Instead, the duration of Kittlitz's murrelet flight was associated with time of day. The strong association between the proximity of cruise ships and the probability of a murrelet flushing, even at distances of several kilometers, demonstrates that Kittlitz's murrelets in Glacier Bay are susceptible to disturbance from cruise ships at distances greater than has previously been published for any seabird. Title: Cruise ship disturbance to Kittlitz's murrelets (Brachyramphus brevirostris) in Glacier Bay National Park and Preserve, Alaska Author: Marcella, Timothy K. The Kittlitz's murrelet (Brachyramphus brevirostris), a small pursuit-diving seabird in the family Alcidae, occurs across much of coastal Alaska and parts of the Russian Far East. Glacier Bay National Park, located in Southeast Alaska, is believed to support approximately 37% of the worldwide breeding population of Kittlitz's murrelets during the summer months. Recent concern over apparent population declines in Alaska, coupled with the Park's dual mandate of resource preservation and visitation, led to this study. Cruise ships, although not the most numerous vessel type operating in Glacier Bay, have previously been identified as the vessel type eliciting the greatest disturbance response from Kittlitz's murrelets. During the murrelet breeding seasons in 2011 and 2012, my field assistants and I collected focal observations of 4,251 Brachyramphus murrelets from the bow of cruise ships traveling through Glacier Bay. Identification of murrelets to species was hampered by both the distance at which murrelets responded to the approaching ship and the type of response to the ship (diving vs. flushing). For roughly 40% of focal observations of murrelets from cruise ships, the species of murrelet (Kittlitz's murrelet or marbled murrelet [B. marmoratus]) could not be identified. Apparent habitat partitioning by the two murrelet species in Glacier Bay resulted in 79% of identified murrelets in the upper section of the Bay (Upper Bay) being Kittlitz's murrelets, while 83% of identified murrelets in the lower section of the Bay (Lower Bay) were marbled murrelets. In the Upper Bay, cruise ships are predicted to disturb 61% of all murrelets within 850 m on either side of the cruise ship's course (i.e., elicited a flushing or diving response), whereas in the Lower Bay, cruise ships are predicted to disturb 72% of murrelets within 850 m of the ship's course. Using Cox multistate models, I demonstrated that murrelets in the Upper Bay (predominantly Kittlitz's murrelets) were more likely to dive than flush in response to approaching cruise ships, whereas murrelets in the Lower Bay (predominantly marbled murrelets) were more likely to flush than dive. Also, murrelets in the Upper Bay responded to cruise ships by flushing or diving at shorter distances from the ship compared to murrelets in the Lower Bay. Murrelets in both areas of Glacier Bay generally reacted to cruise ships at greater distances when the ship approached indirectly, presumably because of the larger profile presented by a passing ship as opposed to a directly advancing ship. Absolute distance of the cruise ship from a focal murrelet was a strong predictor of murrelet disturbance response; no other management-relevant covariates that were measured during this study (e.g., ship velocity, distance to shore, whether a cruise ship had entered the Bay earlier that day) explained a significant proportion of the variation in murrelet response. Inferences based on data collected on-board cruise ships were limited to murrelet disturbance responses that occurred within 1 km of the ship. This was because of limits to the distance from the ship at which behavioral responses could be observed and the a priori assumption that disturbance to murrelets by cruise ships was unlikely at distances greater than 1 km. Results from shipboard observations indicated that some proportion of murrelets encountered at the farthest distance we could make inferences were on occasion disturbed (point estimate at 850 m perpendicular distance from ship's course = 15-30% probability of flushing or diving). This suggests that disturbance of murrelets by cruise ships in Glacier Bay exceeded expected distance thresholds. In order to investigate the effects of cruise ships on murrelet behavior at distances greater than 1 km, my assistants and I collected a total of 643 focal observations of Kittlitz's murrelets during 181 hours of observation from land-based observation sites in the Upper Bay during the 2012 field season. By combining these data with AIS and GPS ship tracks, I was able to append distance to the nearest cruise ship to each focal murrelet observation and search for patterns in murrelet behavior. By collecting data in this manner, I was able to avoid biasing the study based on pre-conceived notions of what constituted a threshold distance for cruise ships to disturb Kittlitz's murrelets. Using a segmented regression model within a logistic regression framework, I found that Kittlitz's murrelets exhibited a disturbance threshold (defined as an increased incidence of flushing from the water) by cruise ships at distances of at least 1.6 km, and perhaps as great as 6.0 km, with a best estimate of threshold disturbance distance at 3.8 km from a cruise ship. When cruise ships were greater than 3.8 km from focal Kittlitz's murrelets, the baseline probability of murrelets flushing during a focal observation period was 12.5%. When cruise ships were less than 3.8 km from focal Kittlitz's murrelets, the probability of flushing increased logistically with decreasing distance to an estimated 48% for the closest approach distances. The unexpectedly long distances at which murrelet behavior was affected by cruise ships in Glacier Bay is most likely attributable to social facilitation by other disturbed murrelets, because similar numbers of murrelets flushed when cruise ships were approaching (n = 30) as when they were receding (n = 27). Once a Kittlitz's murrelet flushed from the water, the subsequent duration of flight did not vary with distance to the nearest cruise ship. Instead, the duration of Kittlitz's murrelet flight was associated with time of day. The strong association between the proximity of cruise ships and the probability of a murrelet flushing, even at distances of several kilometers, demonstrates that Kittlitz's murrelets in Glacier Bay are susceptible to disturbance from cruise ships at distances greater than has previously been published for any seabird. Close

• 3593. [Article] Evaluating the data-poor fishery stock assessment method, DB-SRA

  Depletion-Based Stock Reduction Analysis (DB-SRA; Dick and MacCall, 2011) is a catch-only fisheries stock assessment model that has been developed to estimate an overfishing limit (OFL) in data-poor situations. ...

  Citation × Citation Citation Abstract Copy Title: Evaluating the data-poor fishery stock assessment method, DB-SRA Author: Owashi, Brandon R. Depletion-Based Stock Reduction Analysis (DB-SRA; Dick and MacCall, 2011) is a catch-only fisheries stock assessment model that has been developed to estimate an overfishing limit (OFL) in data-poor situations. DB-SRA projects the biomass trajectories of a stock by means of a catch time series and five parameters: the instantaneous, per annum, rate of natural mortality (M), age at 50% maturity, F[subscript MSY]/M, B[subscriptMSY]/B₀, and the predicted depletion of the stock from its unfished condition. F[subscriptMSY]/M is the rate of fishing mortality associated with the maximum sustainable yield (MSY) divided by the natural mortality rate, and B[subscriptMSY]/B₀ is the biomass level associated with the MSY divided by the unfished level of biomass. DB-SRA performs a Monte Carlo simulation where a large number of random parameter draws are made based on the input parameter’s prior distribution. Based on the catch time series, a biomass trajectory is produced to estimate a feasible set of input parameters and an OFL. The run and corresponding set of input parameters are not retained if the biomass trajectory goes below zero. In instances where the input parameter prior distributions are unknown, Dick and MacCall (2011) proposed a set of default values for two life history types (rockfish and flatfish). Although DB-SRA has been evaluated to some extent and is currently being used for management of data-poor species on the U.S. west coast, further evaluation is warranted. Like other fisheries assessment models, DB-SRA makes several assumptions that may have large influence on outputs and have largely gone untested. First, in essence DB-SRA assumes that only mature fish are caught in the fishery; this is rarely true on the U.S. West Coast and elsewhere, particularly for species with substantial recreational catch. Second, most stock assessment methods, including DB-SRA, are applied to large regions (e.g., U.S. west coast), assuming the population dynamics and fishing behavior remain consistent across the entire area. Market demands and habitat, among other factors, can lead to heterogeneity in population dynamics and fishing behavior. For instance, immature fish are often caught in recreational fisheries, but commercial fisheries tend to target larger fish, causing fishing impact to change across regions. I developed a two-region operating model that simulated data to generate input parameter expected values and a catch time series for each region, then conducted a factorial experiment to investigate the effect of four factors on DB-SRA (version 4) results: (1) different positions of the selectivity curve (the relative vulnerability to fishing of each age class) relative to the maturity curve; (2) spatial scale (separate by region versus combined); (3) exploitation history; and (4) life history type (rockfish and flatfish). The position of the selectivity curve influences the accuracy of the OFL estimates from DB-SRA, whereas the exploitation history has little effect. The OFL estimates are overestimated when the selectivity curve is to the right of the maturity curve and underestimated when the selectivity curve is to the left of the maturity curve. DB-SRA produces higher OFL estimates when two regions are used instead of one large region. Dividing the catch data into multiple regions resulted in higher OFL estimates than one combined region when the same input parameters and catch time series were used. An updated production function, for mimicking population dynamics, was implemented in DB-SRA (version 4), creating separate time lags for mortality and production (recruitment and growth). Instead of setting the time lags for mortality and production equal to the age at 50% maturity (version 3), the time lag for mortality has been changed to one year (version 4). Although the version 4 DB-SRA model has been used for fishery management, it has not been formally evaluated against version 3 to understand the impacts of this change on model results. To investigate the two versions, I looked at different positions of the selectivity curve relative to the maturity curve, different exploitation histories, and varying spatial scale for two life history types. The OFL estimates from version 3 of DB-SRA were larger than the OFL estimates from version 4, which is also evident in the biomass trajectories. The biomass trajectories from version 3 are always greater than the respective biomass trajectories from version 4. Although the OFL estimates from version 4 are not always less biased than those from version 3, the estimates from version 4 are always more precautionary and significantly reduce the chances for overestimating the OFL. The identification of factors that influence DB-SRA OFL estimates could demonstrate how DB-SRA can be adjusted to produce less biased OFL estimates in more situations. The change made in the production function between versions 3 and 4 of DB-SRA makes OFL estimates more precautionary; but does not always reduce the bias in the median OFL estimate. The results from this study could provide information to fisheries managers so that DB-SRA could be potentially improved and is applied in appropriate situations. Title: Evaluating the data-poor fishery stock assessment method, DB-SRA Author: Owashi, Brandon R. Depletion-Based Stock Reduction Analysis (DB-SRA; Dick and MacCall, 2011) is a catch-only fisheries stock assessment model that has been developed to estimate an overfishing limit (OFL) in data-poor situations. DB-SRA projects the biomass trajectories of a stock by means of a catch time series and five parameters: the instantaneous, per annum, rate of natural mortality (M), age at 50% maturity, F[subscript MSY]/M, B[subscriptMSY]/B₀, and the predicted depletion of the stock from its unfished condition. F[subscriptMSY]/M is the rate of fishing mortality associated with the maximum sustainable yield (MSY) divided by the natural mortality rate, and B[subscriptMSY]/B₀ is the biomass level associated with the MSY divided by the unfished level of biomass. DB-SRA performs a Monte Carlo simulation where a large number of random parameter draws are made based on the input parameter’s prior distribution. Based on the catch time series, a biomass trajectory is produced to estimate a feasible set of input parameters and an OFL. The run and corresponding set of input parameters are not retained if the biomass trajectory goes below zero. In instances where the input parameter prior distributions are unknown, Dick and MacCall (2011) proposed a set of default values for two life history types (rockfish and flatfish). Although DB-SRA has been evaluated to some extent and is currently being used for management of data-poor species on the U.S. west coast, further evaluation is warranted. Like other fisheries assessment models, DB-SRA makes several assumptions that may have large influence on outputs and have largely gone untested. First, in essence DB-SRA assumes that only mature fish are caught in the fishery; this is rarely true on the U.S. West Coast and elsewhere, particularly for species with substantial recreational catch. Second, most stock assessment methods, including DB-SRA, are applied to large regions (e.g., U.S. west coast), assuming the population dynamics and fishing behavior remain consistent across the entire area. Market demands and habitat, among other factors, can lead to heterogeneity in population dynamics and fishing behavior. For instance, immature fish are often caught in recreational fisheries, but commercial fisheries tend to target larger fish, causing fishing impact to change across regions. I developed a two-region operating model that simulated data to generate input parameter expected values and a catch time series for each region, then conducted a factorial experiment to investigate the effect of four factors on DB-SRA (version 4) results: (1) different positions of the selectivity curve (the relative vulnerability to fishing of each age class) relative to the maturity curve; (2) spatial scale (separate by region versus combined); (3) exploitation history; and (4) life history type (rockfish and flatfish). The position of the selectivity curve influences the accuracy of the OFL estimates from DB-SRA, whereas the exploitation history has little effect. The OFL estimates are overestimated when the selectivity curve is to the right of the maturity curve and underestimated when the selectivity curve is to the left of the maturity curve. DB-SRA produces higher OFL estimates when two regions are used instead of one large region. Dividing the catch data into multiple regions resulted in higher OFL estimates than one combined region when the same input parameters and catch time series were used. An updated production function, for mimicking population dynamics, was implemented in DB-SRA (version 4), creating separate time lags for mortality and production (recruitment and growth). Instead of setting the time lags for mortality and production equal to the age at 50% maturity (version 3), the time lag for mortality has been changed to one year (version 4). Although the version 4 DB-SRA model has been used for fishery management, it has not been formally evaluated against version 3 to understand the impacts of this change on model results. To investigate the two versions, I looked at different positions of the selectivity curve relative to the maturity curve, different exploitation histories, and varying spatial scale for two life history types. The OFL estimates from version 3 of DB-SRA were larger than the OFL estimates from version 4, which is also evident in the biomass trajectories. The biomass trajectories from version 3 are always greater than the respective biomass trajectories from version 4. Although the OFL estimates from version 4 are not always less biased than those from version 3, the estimates from version 4 are always more precautionary and significantly reduce the chances for overestimating the OFL. The identification of factors that influence DB-SRA OFL estimates could demonstrate how DB-SRA can be adjusted to produce less biased OFL estimates in more situations. The change made in the production function between versions 3 and 4 of DB-SRA makes OFL estimates more precautionary; but does not always reduce the bias in the median OFL estimate. The results from this study could provide information to fisheries managers so that DB-SRA could be potentially improved and is applied in appropriate situations. Close

• 3594. [Article] Effects of the invasive Pacific red lionfish Pterois volitans on native Atlantic coral-reef fish communities

  Predatory lionfishes (Pterois volitans and P. miles) were introduced to Florida waters during the mid to late 1980s, and eventually established self-sustaining breeding populations in the tropical western ...

  Citation × Citation Citation Abstract Copy Title: Effects of the invasive Pacific red lionfish Pterois volitans on native Atlantic coral-reef fish communities Author: Albins, Mark A. Predatory lionfishes (Pterois volitans and P. miles) were introduced to Florida waters during the mid to late 1980s, and eventually established self-sustaining breeding populations in the tropical western Atlantic. These invasive species are now widespread along the southeastern seaboard of the United States, across the Caribbean Sea, and in the Gulf of Mexico. In these regions, lionfish reach larger maximum sizes and higher abundances than they do in their native Pacific, suggesting that they have undergone ecological release. Invaded marine communities have thus far provided little if any biotic resistance. Lionfish are generalist predators with high consumption rates, inhabit a broad range of habitats, are defended from predation by venomous spines, and are capable of long-range larval dispersal. It is possible that lionfish have direct effects on native communities, through consumption of native fishes and competition with native predators, as well as indirect effects, such as overconsumption of herbivorous fishes that prevent seaweeds from outcompeting reef-building corals. There is also serious concern that invasive lionfish could act additively, or even synergistically, with existing stressors of coral-reef systems, such as overfishing and ocean warming, resulting in substantial negative consequences for native ecosystems and economically valuable fisheries. The primary goal of this dissertation was to conduct a set of controlled, replicated field experiments to rigorously examine and measure the effects of lionfish on native reef-fish communities across a range of spatial and temporal scales. In the first experiment (Chapter 2), the net recruitment of native fishes to twenty small patch reefs was compared in the presence (n = 10) and absence (n = 10) of lionfish. This study demonstrated that lionfish reduced net recruitment, or change in abundance of small native fishes, by an average (± SEM) of 78.9 ± 32.2 % over 5 weeks, affecting 23 of 38 species recruiting to reefs in both treatments. In a second experiment (Chapter 4), I examined the effects of lionfish on patch-reef communities of small native fishes relative to, and in combination with, those of a similarly sized native predator, the coney grouper (Cephalopholis fulva). Four different predator treatments were established by transplanting predators (n = 5 reefs each). Treatments included a single small invasive lionfish, a single small native grouper, a grouper and a lionfish together, and predator-free controls. Compared to controls, invasive lionfish caused reductions (mean ± SEM) in abundance (93.7 ± 17.8 %) and species richness (4.6 ± 1.6 species) of small native fishes. The negative effect of lionfish on abundance was 2.6 ± 0.5 times stronger than that of the native grouper. The greatest negative effects on abundance, species richness, evenness, and diversity of native fishes occurred when both lionfish and native grouper were present. Additionally, lionfish grew more than six times faster in both length and mass than did native grouper. A third experiment (Chapter 6) assessed the effects of lionfish on native reef-fish communities at spatial and temporal scales directly relevant to management and conservation efforts. Subsequent to baseline surveys, high- and low-density lionfish treatments were established on 10 large (1400 to 4000 m²) isolated coral reefs. After initiation of treatments, quarterly surveys of the native reef-fish communities were conducted for approximately 14 months. Lionfish caused significant reductions (mean ± SEM) in density (up to 3.22 ± 0.95 fish m⁻²), biomass (3.26 ± 1.10 g m⁻²), and species richness (4.92 ± 2.09 species) of small (<10 cm TL) native fishes. However, these negative effects on prey-sized fishes had not yet translated into declines in larger size classes during the first 14 months of this experiment. In addition to field experiments, this dissertation describes field and aquarium observations of a previously undocumented piscivorous behavior by invasive lionfish - blowing jets of water at prey fish - which may confer a high degree of predation efficiency, thus contributing to the dramatic success of the invasion (Chapter 5). Also provided is a review of the current state of knowledge about the lionfish invasion, with speculation on the long-term effects of the invasion on coral-reef communities, and a brief discussion of potential mitigation measures (Chapter 3). In sum, this research demonstrated that invasive lionfish have substantial negative effects on native communities of coral-reef fishes. In all cases, numerical reductions in small (prey-sized) native fishes caused by lionfish were substantial. Additionally, lionfish caused considerable reductions in native reef-fish species richness (via predation on rare species). These findings indicate that the lionfish invasion may have long-term, broad-scale impacts on the structure and function of coral-reef communities as a whole, potentially reducing the resilience of these systems to a myriad of existing stressors as well as their capacity to provide valuable ecosystem goods and services to humans. Title: Effects of the invasive Pacific red lionfish Pterois volitans on native Atlantic coral-reef fish communities Author: Albins, Mark A. Predatory lionfishes (Pterois volitans and P. miles) were introduced to Florida waters during the mid to late 1980s, and eventually established self-sustaining breeding populations in the tropical western Atlantic. These invasive species are now widespread along the southeastern seaboard of the United States, across the Caribbean Sea, and in the Gulf of Mexico. In these regions, lionfish reach larger maximum sizes and higher abundances than they do in their native Pacific, suggesting that they have undergone ecological release. Invaded marine communities have thus far provided little if any biotic resistance. Lionfish are generalist predators with high consumption rates, inhabit a broad range of habitats, are defended from predation by venomous spines, and are capable of long-range larval dispersal. It is possible that lionfish have direct effects on native communities, through consumption of native fishes and competition with native predators, as well as indirect effects, such as overconsumption of herbivorous fishes that prevent seaweeds from outcompeting reef-building corals. There is also serious concern that invasive lionfish could act additively, or even synergistically, with existing stressors of coral-reef systems, such as overfishing and ocean warming, resulting in substantial negative consequences for native ecosystems and economically valuable fisheries. The primary goal of this dissertation was to conduct a set of controlled, replicated field experiments to rigorously examine and measure the effects of lionfish on native reef-fish communities across a range of spatial and temporal scales. In the first experiment (Chapter 2), the net recruitment of native fishes to twenty small patch reefs was compared in the presence (n = 10) and absence (n = 10) of lionfish. This study demonstrated that lionfish reduced net recruitment, or change in abundance of small native fishes, by an average (± SEM) of 78.9 ± 32.2 % over 5 weeks, affecting 23 of 38 species recruiting to reefs in both treatments. In a second experiment (Chapter 4), I examined the effects of lionfish on patch-reef communities of small native fishes relative to, and in combination with, those of a similarly sized native predator, the coney grouper (Cephalopholis fulva). Four different predator treatments were established by transplanting predators (n = 5 reefs each). Treatments included a single small invasive lionfish, a single small native grouper, a grouper and a lionfish together, and predator-free controls. Compared to controls, invasive lionfish caused reductions (mean ± SEM) in abundance (93.7 ± 17.8 %) and species richness (4.6 ± 1.6 species) of small native fishes. The negative effect of lionfish on abundance was 2.6 ± 0.5 times stronger than that of the native grouper. The greatest negative effects on abundance, species richness, evenness, and diversity of native fishes occurred when both lionfish and native grouper were present. Additionally, lionfish grew more than six times faster in both length and mass than did native grouper. A third experiment (Chapter 6) assessed the effects of lionfish on native reef-fish communities at spatial and temporal scales directly relevant to management and conservation efforts. Subsequent to baseline surveys, high- and low-density lionfish treatments were established on 10 large (1400 to 4000 m²) isolated coral reefs. After initiation of treatments, quarterly surveys of the native reef-fish communities were conducted for approximately 14 months. Lionfish caused significant reductions (mean ± SEM) in density (up to 3.22 ± 0.95 fish m⁻²), biomass (3.26 ± 1.10 g m⁻²), and species richness (4.92 ± 2.09 species) of small (<10 cm TL) native fishes. However, these negative effects on prey-sized fishes had not yet translated into declines in larger size classes during the first 14 months of this experiment. In addition to field experiments, this dissertation describes field and aquarium observations of a previously undocumented piscivorous behavior by invasive lionfish - blowing jets of water at prey fish - which may confer a high degree of predation efficiency, thus contributing to the dramatic success of the invasion (Chapter 5). Also provided is a review of the current state of knowledge about the lionfish invasion, with speculation on the long-term effects of the invasion on coral-reef communities, and a brief discussion of potential mitigation measures (Chapter 3). In sum, this research demonstrated that invasive lionfish have substantial negative effects on native communities of coral-reef fishes. In all cases, numerical reductions in small (prey-sized) native fishes caused by lionfish were substantial. Additionally, lionfish caused considerable reductions in native reef-fish species richness (via predation on rare species). These findings indicate that the lionfish invasion may have long-term, broad-scale impacts on the structure and function of coral-reef communities as a whole, potentially reducing the resilience of these systems to a myriad of existing stressors as well as their capacity to provide valuable ecosystem goods and services to humans. Close

• 3595. [Article] Complexity of food web interactions in a large mammal system

  Food webs consist of a combination of bottom-up (resource-driven) and top-down (predator-driven) effects. The strength of these effects depends on the context in which they occur. I investigated food web ...

  Citation × Citation Citation Abstract Copy Title: Complexity of food web interactions in a large mammal system Author: Eisenberg, Cristina Food webs consist of a combination of bottom-up (resource-driven) and top-down (predator-driven) effects. The strength of these effects depends on the context in which they occur. I investigated food web (trophic) relationships between wolf (Canis lupus) predation, elk (Cervus elaphus) herbivory, aspen (Populus tremuloides Michaux) recruitment, and fire. The study setting, in the central portion of the Crown of the Continent Ecosystem, spans the US/Canada border and encompasses Glacier National Park (GNP), Montana and Waterton Lakes National Park (WLNP), Alberta. I stratified my observations across three spatially distinct areas, the North Fork Valley, in the western portion of GNP; the Waterton Valley, in the eastern portion of WLNP; and the Saint Mary Valley, in the eastern portion of GNP. All valleys are elk winter range (low-lying grasslands with patches of aspen). The valleys have three different observed wolf population levels (Saint Mary: low; Waterton: moderate; North Fork: high), which represent three levels of long-term predation risk (the probability of an elk encountering a wolf). Ecological characteristics (e.g., climate, soils, elevation, plant associations) are comparable among valleys. Fire has occurred in 90% of the North Fork. My objective was to examine the relative influence of bottom-up (fire) and top-down (predation risk) factors and the context-dependence of these relationships via data gathered during a three-year time span. I found complex elk responses to bottom-up and top-down factors that could influence habitat use by elk. Pellet transect data demonstrated that elk exhibited the same risk reduction behavior at all wolf population levels, even at very low levels. Predation risk variables that provided impediments to detecting or escaping wolves had a similar and negative influence on occurrence of elk (pellet piles), regardless of wolf population density. Fire had a negative effect on elk density and a positive effect on wolf density (per scat piles) in aspen communities where a high wolf population existed. Aspen cover, which may be riskier than open grassland, also had a negative effect on elk density, except at very high wolf levels without fire. The risk of wolf predation alone did not drive elk behavior. Conversely, focal animal (elk vigilance behavior) data suggested a positive relationship between wolf population and elk vigilance. However, when I deconstructed vigilance, elk demonstrated complex, context-dependent adaptive behavior in response to the long-term risk of predation by wolves. Commonly identified drivers of elk vigilance (group size, impediments to wolf detection and escape) appeared to be important drivers at an intermediate level of long-term predation risk (e.g., Waterton). These drivers ceased to function in this manner when the long-term predation risk level increased (The North Fork). At high levels of long-term predation risk, vigilance was high, but not driven by these common factors. In some cases, the relationship between vigilance and risk factors was reversed (e.g., group size). And at a low level of long-term predation risk (Saint Mary), elk did not respond to these drivers of vigilance. When I measured aspen demography (browse, recruitment), browse was lower in the North Fork, where there was a high wolf population, suggesting a top-down effect. However, I found low aspen recruitment in the absence of fire in all valleys, which indicates a bottom-up effect in that aspen is highly fire-dependent. Top-down predictors of aspen recruitment (e.g., plot position and stand size, which are related to predation risk) had no effect on browse levels regardless of wolf population level. In sum, the risk of wolf predation alone did not drive the food web relationships I observed. Bottom-up and top-down forces worked together in valleys that contained well-established wolf populations, and to a lesser degree in a valley with a low wolf population. Commonly used measures of predation risk responses (e.g., vigilance) reversed their relationship as the wolf population increased. Low aspen recruitment in the absence of fire demonstrates the importance of bottom-up effects. Bottom-up and top-down effects may be important joint engineers of aspen communities. My findings invite deeper inquiry into the interaction between bottom-up and top-down effects in large mammal systems. Title: Complexity of food web interactions in a large mammal system Author: Eisenberg, Cristina Food webs consist of a combination of bottom-up (resource-driven) and top-down (predator-driven) effects. The strength of these effects depends on the context in which they occur. I investigated food web (trophic) relationships between wolf (Canis lupus) predation, elk (Cervus elaphus) herbivory, aspen (Populus tremuloides Michaux) recruitment, and fire. The study setting, in the central portion of the Crown of the Continent Ecosystem, spans the US/Canada border and encompasses Glacier National Park (GNP), Montana and Waterton Lakes National Park (WLNP), Alberta. I stratified my observations across three spatially distinct areas, the North Fork Valley, in the western portion of GNP; the Waterton Valley, in the eastern portion of WLNP; and the Saint Mary Valley, in the eastern portion of GNP. All valleys are elk winter range (low-lying grasslands with patches of aspen). The valleys have three different observed wolf population levels (Saint Mary: low; Waterton: moderate; North Fork: high), which represent three levels of long-term predation risk (the probability of an elk encountering a wolf). Ecological characteristics (e.g., climate, soils, elevation, plant associations) are comparable among valleys. Fire has occurred in 90% of the North Fork. My objective was to examine the relative influence of bottom-up (fire) and top-down (predation risk) factors and the context-dependence of these relationships via data gathered during a three-year time span. I found complex elk responses to bottom-up and top-down factors that could influence habitat use by elk. Pellet transect data demonstrated that elk exhibited the same risk reduction behavior at all wolf population levels, even at very low levels. Predation risk variables that provided impediments to detecting or escaping wolves had a similar and negative influence on occurrence of elk (pellet piles), regardless of wolf population density. Fire had a negative effect on elk density and a positive effect on wolf density (per scat piles) in aspen communities where a high wolf population existed. Aspen cover, which may be riskier than open grassland, also had a negative effect on elk density, except at very high wolf levels without fire. The risk of wolf predation alone did not drive elk behavior. Conversely, focal animal (elk vigilance behavior) data suggested a positive relationship between wolf population and elk vigilance. However, when I deconstructed vigilance, elk demonstrated complex, context-dependent adaptive behavior in response to the long-term risk of predation by wolves. Commonly identified drivers of elk vigilance (group size, impediments to wolf detection and escape) appeared to be important drivers at an intermediate level of long-term predation risk (e.g., Waterton). These drivers ceased to function in this manner when the long-term predation risk level increased (The North Fork). At high levels of long-term predation risk, vigilance was high, but not driven by these common factors. In some cases, the relationship between vigilance and risk factors was reversed (e.g., group size). And at a low level of long-term predation risk (Saint Mary), elk did not respond to these drivers of vigilance. When I measured aspen demography (browse, recruitment), browse was lower in the North Fork, where there was a high wolf population, suggesting a top-down effect. However, I found low aspen recruitment in the absence of fire in all valleys, which indicates a bottom-up effect in that aspen is highly fire-dependent. Top-down predictors of aspen recruitment (e.g., plot position and stand size, which are related to predation risk) had no effect on browse levels regardless of wolf population level. In sum, the risk of wolf predation alone did not drive the food web relationships I observed. Bottom-up and top-down forces worked together in valleys that contained well-established wolf populations, and to a lesser degree in a valley with a low wolf population. Commonly used measures of predation risk responses (e.g., vigilance) reversed their relationship as the wolf population increased. Low aspen recruitment in the absence of fire demonstrates the importance of bottom-up effects. Bottom-up and top-down effects may be important joint engineers of aspen communities. My findings invite deeper inquiry into the interaction between bottom-up and top-down effects in large mammal systems. Close

• 3596. [Article] A UK perspective on marine renewable energy environmental research: Keeping up with a ‘Deploy & Monitor’ philosophy

  There are many drivers for the pursuit of renewable energy extraction from coastal seas. In the United Kingdom these include moving away from fossil fuels to mitigate the impacts of climate change, improving ...

  Citation × Citation Citation Abstract Copy Title: A UK perspective on marine renewable energy environmental research: Keeping up with a ‘Deploy & Monitor’ philosophy Author: Wilson, Ben There are many drivers for the pursuit of renewable energy extraction from coastal seas. In the United Kingdom these include moving away from fossil fuels to mitigate the impacts of climate change, improving energy security by diversifying supply options, increasing wealth generation in outlying coastal communities, and seeking alternative sources of power as existing infrastructure (power stations) near the end of their useful lives. In Scotland these drivers are particularly strong because of the additional factors of decline of North Sea oil reserves; the political pressure not to re-develop nuclear power plants; and the abundant offshore wind, wave and tidal-stream resources. While these drivers are strong, and backed up by ambitious political targets, a variety of constraints currently limit development of a vibrant marine renewables sector in UK coastal waters. In addition to financial, technological and logistical issues, a diversity of environmental restrictions limitprogress of the renewables sector. Many of these environmental issues actually stem from a lack of basic knowledge of how marine renewable energy devices are likely to interact with the receiving environment and vulnerable species (particularly those protected by European legislation such as the Habitats and Species as well as the Birds Directives). Furthermore where negative interactions are known, there may be limited knowledge about, or options for, mitigating these impacts. Strictly applying precautionary principals to these new and diverse technologies with respect to their potential local negative environmental impacts threatens to halt development of these technologies despite their potential benefits for global climate and other environmental issues. This problem applies particularly to wave and tidal-stream technologies which are diverse, new, and without track-record. To overcome this issue, the Scottish government is implementing a staged introduction of these technologies under what has been termed a “Survey-Deploy-&-Monitor” policy. That is, commercial scale devices are being placed singly or in small arrays (< 10 MW) into areas of pre-determined and acceptable environmental sensitivity and then impacts are being quantified through a monitoring program. In parallel to this approach, The Crown Estate (the seabed owner) has performed a series of licensing rounds to lease preferred sites to specific wind, wave and tidal-stream developers. If consented, these sites will represent commercial-scale developments of all three technologies in Scottish and wider UK waters. Part of that consenting progress requires that developers provide evidence (through Environmental Impact Studies and the production of Environmental Statements) that their developments will not harm the surrounding environment. It is these consenting exercises and related fundamental questions about impacts that are currently driving most of the environmental research related to offshore wind and marine renewable technologies in the UK. Research tends to fall into three divisions based on the source of funding and the geographic scope of the issues. At the smallest scale are studies of individual sites of interest to individual developers seeking consents for a specific technology. More generic studies funded by government or industry consortia may be performed to understand environmental issues surrounding a particular group of technologies, installation methods, or operational parameters. In this case, the actual site may be less important. Finally, fundamental research (funded by Research Councils) may be carried out to understand how and why animals use renewable energy relevant sites. Because there are a large number of research studies currently underway at a wide range of scales, sites, and taxa in Scotland and the wider UK, it is not possible to summarize them all in this short talk. Instead, I will outline examples of the three broad areas of environmental research (site/device specific, technology generic and more basic ecology). These examples have also been chosen because they represent an ongoing project, a recently established group of research studies, and a potential new research program. Some of the perhaps less intuitive lessons that have arisen from some of such projects include : 1. The responses of organisms may not be tied to particular brands of device or energy extraction, whether wind, wave, tidal-stream or even oil platform. For fouling organisms the particulars of the substrate might be the important factor rather than the device’s method of energy extraction. Likewise for fish it may be the device complexity and position in the water column that is key to their interactions. 2. Conversely, particular, seemingly unimportant features of devices may have relevance to marine organisms. For example, the color of a turbine may be extremely important for animals maneuvering around the rotors, a duct or the pile. 3. Test centers used to assess full-scale devices may seem like excellent places to also perform environmental research; however care must be taken as the devices in test centers are typically early generation prototypes and may be swapped out frequently. Furthermore activities by other companies at neighboring berths may invalidate site or device specific experiments. 4. Inter-annual variability does not suit the current pace of marine renewables development and careful consideration of the use of control sites and BACI designs should be made. 5. Cumulative impacts of multiple renewable and other developments offer a massive challenge to determining environmental impact. This difficulty represents a significant area of uncertainty for developers seeking consent and may encourage a development race with companies not wanting to have to consider their development relative to all of the others that preceded them. 6. Finally, while much effort is currently being devoted to gathering sufficient data to permit consent and early stage deployments, the significant investments only come when developers set up arrays capable of producing commercially relevant power. At this point there may be a step change in the degree of monitoring required of any potential environmental interactions. Should intolerable impacts be found, then mitigation will be urgently required or an exit strategy implemented. Title: A UK perspective on marine renewable energy environmental research: Keeping up with a ‘Deploy & Monitor’ philosophy Author: Wilson, Ben There are many drivers for the pursuit of renewable energy extraction from coastal seas. In the United Kingdom these include moving away from fossil fuels to mitigate the impacts of climate change, improving energy security by diversifying supply options, increasing wealth generation in outlying coastal communities, and seeking alternative sources of power as existing infrastructure (power stations) near the end of their useful lives. In Scotland these drivers are particularly strong because of the additional factors of decline of North Sea oil reserves; the political pressure not to re-develop nuclear power plants; and the abundant offshore wind, wave and tidal-stream resources. While these drivers are strong, and backed up by ambitious political targets, a variety of constraints currently limit development of a vibrant marine renewables sector in UK coastal waters. In addition to financial, technological and logistical issues, a diversity of environmental restrictions limitprogress of the renewables sector. Many of these environmental issues actually stem from a lack of basic knowledge of how marine renewable energy devices are likely to interact with the receiving environment and vulnerable species (particularly those protected by European legislation such as the Habitats and Species as well as the Birds Directives). Furthermore where negative interactions are known, there may be limited knowledge about, or options for, mitigating these impacts. Strictly applying precautionary principals to these new and diverse technologies with respect to their potential local negative environmental impacts threatens to halt development of these technologies despite their potential benefits for global climate and other environmental issues. This problem applies particularly to wave and tidal-stream technologies which are diverse, new, and without track-record. To overcome this issue, the Scottish government is implementing a staged introduction of these technologies under what has been termed a “Survey-Deploy-&-Monitor” policy. That is, commercial scale devices are being placed singly or in small arrays (< 10 MW) into areas of pre-determined and acceptable environmental sensitivity and then impacts are being quantified through a monitoring program. In parallel to this approach, The Crown Estate (the seabed owner) has performed a series of licensing rounds to lease preferred sites to specific wind, wave and tidal-stream developers. If consented, these sites will represent commercial-scale developments of all three technologies in Scottish and wider UK waters. Part of that consenting progress requires that developers provide evidence (through Environmental Impact Studies and the production of Environmental Statements) that their developments will not harm the surrounding environment. It is these consenting exercises and related fundamental questions about impacts that are currently driving most of the environmental research related to offshore wind and marine renewable technologies in the UK. Research tends to fall into three divisions based on the source of funding and the geographic scope of the issues. At the smallest scale are studies of individual sites of interest to individual developers seeking consents for a specific technology. More generic studies funded by government or industry consortia may be performed to understand environmental issues surrounding a particular group of technologies, installation methods, or operational parameters. In this case, the actual site may be less important. Finally, fundamental research (funded by Research Councils) may be carried out to understand how and why animals use renewable energy relevant sites. Because there are a large number of research studies currently underway at a wide range of scales, sites, and taxa in Scotland and the wider UK, it is not possible to summarize them all in this short talk. Instead, I will outline examples of the three broad areas of environmental research (site/device specific, technology generic and more basic ecology). These examples have also been chosen because they represent an ongoing project, a recently established group of research studies, and a potential new research program. Some of the perhaps less intuitive lessons that have arisen from some of such projects include : 1. The responses of organisms may not be tied to particular brands of device or energy extraction, whether wind, wave, tidal-stream or even oil platform. For fouling organisms the particulars of the substrate might be the important factor rather than the device’s method of energy extraction. Likewise for fish it may be the device complexity and position in the water column that is key to their interactions. 2. Conversely, particular, seemingly unimportant features of devices may have relevance to marine organisms. For example, the color of a turbine may be extremely important for animals maneuvering around the rotors, a duct or the pile. 3. Test centers used to assess full-scale devices may seem like excellent places to also perform environmental research; however care must be taken as the devices in test centers are typically early generation prototypes and may be swapped out frequently. Furthermore activities by other companies at neighboring berths may invalidate site or device specific experiments. 4. Inter-annual variability does not suit the current pace of marine renewables development and careful consideration of the use of control sites and BACI designs should be made. 5. Cumulative impacts of multiple renewable and other developments offer a massive challenge to determining environmental impact. This difficulty represents a significant area of uncertainty for developers seeking consent and may encourage a development race with companies not wanting to have to consider their development relative to all of the others that preceded them. 6. Finally, while much effort is currently being devoted to gathering sufficient data to permit consent and early stage deployments, the significant investments only come when developers set up arrays capable of producing commercially relevant power. At this point there may be a step change in the degree of monitoring required of any potential environmental interactions. Should intolerable impacts be found, then mitigation will be urgently required or an exit strategy implemented. Close

• 3597. [Article] Forestry

  Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2009. All rights reserved.

  Citation × Citation Citation Abstract Copy Title: Forestry Author: Avery, Bonnie E. Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2009. All rights reserved. Title: Forestry Author: Avery, Bonnie E. Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2009. All rights reserved. Close

• 3598. [Article] Forestry

  Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2011. All rights reserved.

  Citation × Citation Citation Abstract Copy Title: Forestry Author: Avery, Bonnie E. Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2011. All rights reserved. Title: Forestry Author: Avery, Bonnie E. Posted by permission of Cambridge Scientific Abstracts (CSA). (c) CSA 2011. All rights reserved. Close

• 3599. [Article] Plant selection, irrigation requirements and stormwater management of Pacific Northwest extensive green roofs

  An alternative to traditional roofing, extensive green roofs are contained ecosystems consisting of a drainage layer, a thin media profile which is planted with hardy plant species. Extensive green roof ...

  Citation × Citation Citation Abstract Copy Title: Plant selection, irrigation requirements and stormwater management of Pacific Northwest extensive green roofs Author: Shroll, Erin An alternative to traditional roofing, extensive green roofs are contained ecosystems consisting of a drainage layer, a thin media profile which is planted with hardy plant species. Extensive green roof plants must maintain multiple functions while growing in a highly aggregate media at a depth of equal to or less than 15.25 cm. The shallow media depth weighs less and can often be used when retrofitting an existing building with a green roof. Maximizing functions such as stormwater mitigation requires designing for the purpose of the green roof goal and for the maintenance plan that will ensure plant health in extreme environments. However, our understanding of these complex and dynamic ecosystems on rooftops is still very limited and management of green roofs is often an afterthought, rarely taking into account regional differences in climate. The establishment period of an extensive green roof is a critical time to promote plant coverage, which often requires irrigation during dry periods. The Pacific Northwest (PNW) climate is challenging for green roof management because plants experience cool wet conditions for much of the year yet must survive warm, nearly rainless summers. However, extensive green roof maintenance is generally minimal unless aesthetics are the primary goal. Maintenance in the second year and the years following includes irrigation during dry periods to keep plants healthy or to enhance green roof function. The removal of competitive weeds and tree seedlings is also recommended throughout the life of the green roof. Extensive green roofs are increasingly being used to help improve stormwater management. The vegetative portion of an extensive green roof design is often steered by the structural load that a building can hold along with availability of local products and materials such as media and plants. A lightweight, high aggregate media planted with Sedum species and other succulents is often selected as these components have been successful and work well together. However, with the drive to increase the functional role of extensive green roofs, media and plant selection must be further investigated to fully understand how we can optimize green roof efficiency—in our case, stormwater management efficiency, the most requested function of commercial green roofs. In this study green roof plants were provided adequate irrigation in the first summer and throughout establishment. At the start of the second summer, we tested how the eight taxa performed under three different management regimes in the PNW: (i) non-irrigated, ii) irrigated in compliance with Portland, Oregon's floor area ratio (FAR) bonus requirement and iii) according to out horticultural decision resulting in the highest watering regime. We also measured weed pressure across the irrigation treatments. We selected plant taxa based on their potential functional attributes (habitat quality, aesthetic quality, stormwater management proficiency) as well as their availability through the regional nursery trade. Plants selected were Camassia quamash, Cistus creticus ssp creticus 'Lasithi', Delosperma cooperi, Eriophyllum lanatum var lanatum, Festuca idahoensis var roemeri, Iris chrysophylla, Sedum spathulifolium 'Cape Blanco' and Sisyrinchium idahoense. Within selected seasons the mean relative growth rate (MRGR) of each plant was analyzed and survivorship was recorded throughout this study. Throughout the first year of establishment, all plants grew and survival was high. Exceptions were that I. chrysophylla declined in mean relative growth rate (MRGR) and D. cooperi had a twenty five percent loss in survival during a cold winter spell. Plant growth and overall plant performance varied considerably among taxa throughout establishment and across the summer irrigation treatments. Weed pressure also varied across treatments. The highest watering regime provided the greatest plant survivorship and plants generally had a positive increase in MRGR. Exceptions were F. idahoensis var roemeri, which decreased in MRGR and S. spathulifolium 'Cape Blanco' which did not change in size. The irrigation regime compliant with the City of Portland provided increased plant survivorship over the non-irrigated regime, yet plant aesthetics were less for the same species compared to the highest watering regime. Plant survivorship in the non-irrigated regime included succulents, D. cooperi and S. spathulifolium 'Cape Blanco', and the summer-dormant bulb, C. quamash. Plant aesthetics within each irrigation regime varied considerably and mean aesthetic ratings declined as the summer season progressed. These results suggest that tailoring green roof management more precisely to plant choices and the regional environment will improve function and reduce overall costs. Maintenance costs are less (water costs and weeding labor) with a non-irrigated green roof however, plant aesthetics are compromised when plants experience three to five days without water. Overall the collected runoff from rainfall throughout this study, planted green roofs retained 45% of roof runoff verses 40.5 % retained by media only roofs (p< 0.001). Of the significantly different comparisons (α = 0.05), the vegetated plots had a higher mean retention of runoff over media only roofs nine times out of ten. Green roof runoff retention varied considerably throughout the collection period depending on season, rainfall amounts and saturation of media. Climatic variations and increased plant growth may explain these varying results of stormwater runoff retention of the green roofs. Results from this study suggest that we need to explicitly design green roofs to maximize the ecological goal, which in the case of this research is to mimic nature and allow for rainwater infiltration, retaining a percentage of runoff and detaining the rest so that it enters into stormwater systems at a manageable speed after the peak of the storm. The vegetative layer plays an important role in mitigating stormwater runoff; proper design influenced by regional climate, rooftop microclimates and plant needs as well as the subsequent maintenance regimes will optimize the intended green roof function while providing a suite of additional benefits. Title: Plant selection, irrigation requirements and stormwater management of Pacific Northwest extensive green roofs Author: Shroll, Erin An alternative to traditional roofing, extensive green roofs are contained ecosystems consisting of a drainage layer, a thin media profile which is planted with hardy plant species. Extensive green roof plants must maintain multiple functions while growing in a highly aggregate media at a depth of equal to or less than 15.25 cm. The shallow media depth weighs less and can often be used when retrofitting an existing building with a green roof. Maximizing functions such as stormwater mitigation requires designing for the purpose of the green roof goal and for the maintenance plan that will ensure plant health in extreme environments. However, our understanding of these complex and dynamic ecosystems on rooftops is still very limited and management of green roofs is often an afterthought, rarely taking into account regional differences in climate. The establishment period of an extensive green roof is a critical time to promote plant coverage, which often requires irrigation during dry periods. The Pacific Northwest (PNW) climate is challenging for green roof management because plants experience cool wet conditions for much of the year yet must survive warm, nearly rainless summers. However, extensive green roof maintenance is generally minimal unless aesthetics are the primary goal. Maintenance in the second year and the years following includes irrigation during dry periods to keep plants healthy or to enhance green roof function. The removal of competitive weeds and tree seedlings is also recommended throughout the life of the green roof. Extensive green roofs are increasingly being used to help improve stormwater management. The vegetative portion of an extensive green roof design is often steered by the structural load that a building can hold along with availability of local products and materials such as media and plants. A lightweight, high aggregate media planted with Sedum species and other succulents is often selected as these components have been successful and work well together. However, with the drive to increase the functional role of extensive green roofs, media and plant selection must be further investigated to fully understand how we can optimize green roof efficiency—in our case, stormwater management efficiency, the most requested function of commercial green roofs. In this study green roof plants were provided adequate irrigation in the first summer and throughout establishment. At the start of the second summer, we tested how the eight taxa performed under three different management regimes in the PNW: (i) non-irrigated, ii) irrigated in compliance with Portland, Oregon's floor area ratio (FAR) bonus requirement and iii) according to out horticultural decision resulting in the highest watering regime. We also measured weed pressure across the irrigation treatments. We selected plant taxa based on their potential functional attributes (habitat quality, aesthetic quality, stormwater management proficiency) as well as their availability through the regional nursery trade. Plants selected were Camassia quamash, Cistus creticus ssp creticus 'Lasithi', Delosperma cooperi, Eriophyllum lanatum var lanatum, Festuca idahoensis var roemeri, Iris chrysophylla, Sedum spathulifolium 'Cape Blanco' and Sisyrinchium idahoense. Within selected seasons the mean relative growth rate (MRGR) of each plant was analyzed and survivorship was recorded throughout this study. Throughout the first year of establishment, all plants grew and survival was high. Exceptions were that I. chrysophylla declined in mean relative growth rate (MRGR) and D. cooperi had a twenty five percent loss in survival during a cold winter spell. Plant growth and overall plant performance varied considerably among taxa throughout establishment and across the summer irrigation treatments. Weed pressure also varied across treatments. The highest watering regime provided the greatest plant survivorship and plants generally had a positive increase in MRGR. Exceptions were F. idahoensis var roemeri, which decreased in MRGR and S. spathulifolium 'Cape Blanco' which did not change in size. The irrigation regime compliant with the City of Portland provided increased plant survivorship over the non-irrigated regime, yet plant aesthetics were less for the same species compared to the highest watering regime. Plant survivorship in the non-irrigated regime included succulents, D. cooperi and S. spathulifolium 'Cape Blanco', and the summer-dormant bulb, C. quamash. Plant aesthetics within each irrigation regime varied considerably and mean aesthetic ratings declined as the summer season progressed. These results suggest that tailoring green roof management more precisely to plant choices and the regional environment will improve function and reduce overall costs. Maintenance costs are less (water costs and weeding labor) with a non-irrigated green roof however, plant aesthetics are compromised when plants experience three to five days without water. Overall the collected runoff from rainfall throughout this study, planted green roofs retained 45% of roof runoff verses 40.5 % retained by media only roofs (p< 0.001). Of the significantly different comparisons (α = 0.05), the vegetated plots had a higher mean retention of runoff over media only roofs nine times out of ten. Green roof runoff retention varied considerably throughout the collection period depending on season, rainfall amounts and saturation of media. Climatic variations and increased plant growth may explain these varying results of stormwater runoff retention of the green roofs. Results from this study suggest that we need to explicitly design green roofs to maximize the ecological goal, which in the case of this research is to mimic nature and allow for rainwater infiltration, retaining a percentage of runoff and detaining the rest so that it enters into stormwater systems at a manageable speed after the peak of the storm. The vegetative layer plays an important role in mitigating stormwater runoff; proper design influenced by regional climate, rooftop microclimates and plant needs as well as the subsequent maintenance regimes will optimize the intended green roof function while providing a suite of additional benefits. Close

• 3600. [Article] Pacific lamprey research and restoration project : annual report 1998

  This document is the 1998 annual progress report for studies of Pacific lampreys (Lampetra tridentata) conducted by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), Columbia River Inter-Tribal ...

  Citation × Citation Citation Abstract Copy Title: Pacific lamprey research and restoration project : annual report 1998 Author: Close, David A. This document is the 1998 annual progress report for studies of Pacific lampreys (Lampetra tridentata) conducted by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), Columbia River Inter-Tribal Fish Commission, and University of Minnesota (U of M). Bonneville Power Administration (BPA) funded activities through Project 94-026. The Pacific Lamprey Research and Restoration Project began after completion of a status report of Pacific lamprey in the Columbia River in 1995. The project started as a cooperative effort between the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), Columbia River Inter-Tribal Fish Commission (CRITFC), and Oregon State University (OSU). Lamprey are a valuable subsistence food and cultural resource for Native Americans of the Pacific Northwest. The once abundant Pacific lampreys above Bonneville Dam are currently depressed (Close et al. 1995). Declines in Pacific lampreys have impacted treaty secured fishing opportunities by limiting tribal members catch and access to Pacific lampreys in the interior Columbia basin. Tribal members now harvest lampreys in lower Columbia River locations such as Willamette Falls near Oregon City, Oregon. Pacific lampreys are also an important part of the food web of North Pacific ecosystems, both as predator (Beamish 1980; Pike 1951; Roos and Gillohousin 1973), and prey (Semekula and Larkin 1968; Galbreath 1979; Roffe and Mate 1984; Merrell 1959; Wolf and Jones 1989) and as a vehicle for recruitment of marine nutrients. The decline of Pacific lampreys in the interior Columbia River basin has become a major concern. Effective recovery measures for Pacific lampreys can only be developed after we increase our knowledge of the biology and factors that are limiting the various life history stages. Prior to developing a restoration plan, we have carried out studies to review status, distribution, abundance, homing ability, and stock structure. These studies will culminate in the development and implementation of a restoration plan for the Umatilla River. Multiple pass electrofishing surveys to assess densities and distribution of lamprey larvae in the Umatilla River were conducted in 1998. Electrofishing surveys in the Umatilla River are useful for baseline comparison. Forty-two index sites were sampled from the mouth to river kilometer (RK) 124. Lamprey larvae were found in 4 of the 42 index plots. All sites with larvae were found at and below RK 9.3. Nine larvae were captured during the surveys. However, no larvae were caught on the second pass in each plot. Pacific lamprey larvae and adult lampreys were studied to determine their ability to produce and detect pheromones. Larval gall bladders were removed and gall bladder fluid was extracted and analyzed by high performance liquid chromatography (HPLC). Adult lampreys ability to detect pheromones were tested using electro-olfactogram (EOG) methods. Fifteen compounds including Petromyzonol sulfate (PS), a migratory pheromone found in sea lamprey larvae (Petromyzon marinus) (Li et al. 1995) were tested. Larval lampreys produced large amounts of (PS). Adult Pacific lamprey can detect PS and have an olfactory sensitivity to pheromones that is similar to sea lampreys. iv Pacific lamprey abundance, as indexed by fish ladder counts in 1998, was; Bonneville 37,478; The Dalles 7,665; John Day 12,579; McNary 3,393; Ice Harbor 763; Lower Monumental 69; Little Goose 90; Lower Granite 110; Rock Island 1,410; and Rock Reach 819 dams, respectively. Enumerating Pacific lamprey at counting stations remained extremely problematic, since excessive up- and downstream movement at the counting windows reduces the confidence in fish ladder passage estimates. This may be an indication of passage problems encountered by Pacific lampreys. In-season homing of Pacific lamprey was studied using radio telemetry. Pacific lampery were captured at Willamette Falls and Bonneville Dam, outfitted with radio transmitters and released approximately 26 km downstream of the Willamette River confluence. A total of 50 fish were instrumented. Results will be presented in next year’s report. Natal homing was also investigated using mtDNA analysis of fish captured at Bonneville Dam and from Willamette Falls. These results will also be presented next year. We collected lamprey tissues, from fish captured in several locations throughout the Columbia River Basin, to develop a genetic database for use in determining population structure. Additional samples for populations outside the Columbia River Basin were used to scale the results. Results from this investigation will be presented in next year’s annual report. Since the initiation of the CTUIR lamprey research and restoration project, additional lamprey studies have been proposed that have created uncertainties regarding the prioritization of projects and needs of lampreys. At the request of the Northwest Power Planning Council, a multi-agency Pacific lamprey technical workgroup (TWG) was established in 1996. Annual meetings are held to coordinate projects and prioritize research needs. The TWG identified critical uncertainties and needs to help in determining priorities of ongoing and proposed projects (Appendix A). Finally, an annotated bibliography of relevant lamprey literature was compiled (Appendix B). Title: Pacific lamprey research and restoration project : annual report 1998 Author: Close, David A. This document is the 1998 annual progress report for studies of Pacific lampreys (Lampetra tridentata) conducted by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), Columbia River Inter-Tribal Fish Commission, and University of Minnesota (U of M). Bonneville Power Administration (BPA) funded activities through Project 94-026. The Pacific Lamprey Research and Restoration Project began after completion of a status report of Pacific lamprey in the Columbia River in 1995. The project started as a cooperative effort between the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), Columbia River Inter-Tribal Fish Commission (CRITFC), and Oregon State University (OSU). Lamprey are a valuable subsistence food and cultural resource for Native Americans of the Pacific Northwest. The once abundant Pacific lampreys above Bonneville Dam are currently depressed (Close et al. 1995). Declines in Pacific lampreys have impacted treaty secured fishing opportunities by limiting tribal members catch and access to Pacific lampreys in the interior Columbia basin. Tribal members now harvest lampreys in lower Columbia River locations such as Willamette Falls near Oregon City, Oregon. Pacific lampreys are also an important part of the food web of North Pacific ecosystems, both as predator (Beamish 1980; Pike 1951; Roos and Gillohousin 1973), and prey (Semekula and Larkin 1968; Galbreath 1979; Roffe and Mate 1984; Merrell 1959; Wolf and Jones 1989) and as a vehicle for recruitment of marine nutrients. The decline of Pacific lampreys in the interior Columbia River basin has become a major concern. Effective recovery measures for Pacific lampreys can only be developed after we increase our knowledge of the biology and factors that are limiting the various life history stages. Prior to developing a restoration plan, we have carried out studies to review status, distribution, abundance, homing ability, and stock structure. These studies will culminate in the development and implementation of a restoration plan for the Umatilla River. Multiple pass electrofishing surveys to assess densities and distribution of lamprey larvae in the Umatilla River were conducted in 1998. Electrofishing surveys in the Umatilla River are useful for baseline comparison. Forty-two index sites were sampled from the mouth to river kilometer (RK) 124. Lamprey larvae were found in 4 of the 42 index plots. All sites with larvae were found at and below RK 9.3. Nine larvae were captured during the surveys. However, no larvae were caught on the second pass in each plot. Pacific lamprey larvae and adult lampreys were studied to determine their ability to produce and detect pheromones. Larval gall bladders were removed and gall bladder fluid was extracted and analyzed by high performance liquid chromatography (HPLC). Adult lampreys ability to detect pheromones were tested using electro-olfactogram (EOG) methods. Fifteen compounds including Petromyzonol sulfate (PS), a migratory pheromone found in sea lamprey larvae (Petromyzon marinus) (Li et al. 1995) were tested. Larval lampreys produced large amounts of (PS). Adult Pacific lamprey can detect PS and have an olfactory sensitivity to pheromones that is similar to sea lampreys. iv Pacific lamprey abundance, as indexed by fish ladder counts in 1998, was; Bonneville 37,478; The Dalles 7,665; John Day 12,579; McNary 3,393; Ice Harbor 763; Lower Monumental 69; Little Goose 90; Lower Granite 110; Rock Island 1,410; and Rock Reach 819 dams, respectively. Enumerating Pacific lamprey at counting stations remained extremely problematic, since excessive up- and downstream movement at the counting windows reduces the confidence in fish ladder passage estimates. This may be an indication of passage problems encountered by Pacific lampreys. In-season homing of Pacific lamprey was studied using radio telemetry. Pacific lampery were captured at Willamette Falls and Bonneville Dam, outfitted with radio transmitters and released approximately 26 km downstream of the Willamette River confluence. A total of 50 fish were instrumented. Results will be presented in next year’s report. Natal homing was also investigated using mtDNA analysis of fish captured at Bonneville Dam and from Willamette Falls. These results will also be presented next year. We collected lamprey tissues, from fish captured in several locations throughout the Columbia River Basin, to develop a genetic database for use in determining population structure. Additional samples for populations outside the Columbia River Basin were used to scale the results. Results from this investigation will be presented in next year’s annual report. Since the initiation of the CTUIR lamprey research and restoration project, additional lamprey studies have been proposed that have created uncertainties regarding the prioritization of projects and needs of lampreys. At the request of the Northwest Power Planning Council, a multi-agency Pacific lamprey technical workgroup (TWG) was established in 1996. Annual meetings are held to coordinate projects and prioritize research needs. The TWG identified critical uncertainties and needs to help in determining priorities of ongoing and proposed projects (Appendix A). Finally, an annotated bibliography of relevant lamprey literature was compiled (Appendix B). Close