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• 11. [Article] Salmonberry River Steelhead Spawning Surveys

  Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP ...

  Citation × Citation Citation Abstract Copy Title: Salmonberry River Steelhead Spawning Surveys Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP Report-Salmonberry Spawning Surveys". For convenience and further long-term context, the data also include ODFW peak counts since 1973, based on Streamnet data (1973-1992) and personal communication from Walt Weber (1993 and later) Title: Salmonberry River Steelhead Spawning Surveys Abstract -- Results of spawning ground surveys since 1994, done by volunteers under a STEP project. Target species = winter steelhead. Project background and protocols are reported in the document "STEP Report-Salmonberry Spawning Surveys". For convenience and further long-term context, the data also include ODFW peak counts since 1973, based on Streamnet data (1973-1992) and personal communication from Walt Weber (1993 and later) Close

• 12. [Article] Comparison between environmental characteristics of larval bluefin tuna Thunnus thynnus habitat in the Gulf of Mexico and western Mediterranean Sea

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research ...

  Citation × Citation Citation Abstract Copy Title: Comparison between environmental characteristics of larval bluefin tuna Thunnus thynnus habitat in the Gulf of Mexico and western Mediterranean Sea Author: Alemany, Francisco, Reglero, Patricia, Muhling, Barbara A., Ciannelli, Lorenzo, Lamkin, John T., Alvarez-Berastegui, Diego, Roffer, Mitchell A. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/home/. Title: Comparison between environmental characteristics of larval bluefin tuna Thunnus thynnus habitat in the Gulf of Mexico and western Mediterranean Sea Author: Alemany, Francisco, Reglero, Patricia, Muhling, Barbara A., Ciannelli, Lorenzo, Lamkin, John T., Alvarez-Berastegui, Diego, Roffer, Mitchell A. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by Inter-Research and can be found at: http://www.int-res.com/home/. Close

• 13. [Article] Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009

  Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests ...

  Citation × Citation Citation Abstract Copy Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Prevalence of Bacterial Kidney Disease in Natural vs. Hatchery-Reared Adult Chinook Salmon Spawned in a Hatchery and in Nature - Information Report 2009 Abstract -- Bacterial kidney disease (BKD) is a major health problem of cultured Pacific salmon, Oncorhynchus sp. It has been particularly problematic in captive broodstock programs, where the interests of gene conservation and fish health can conflict when spawning females with signs of BKD. Not rearing those fish reduces the genetic diversity of an already depleted population, while rearing those fish may increase the prevalence of BKD in the natural population. We used data collected during spawning at Lookingglass Fish hatchery and on spawning ground surveys to examine the prevalence of BKD, based on enzyme-linked immunosorbent assay optical density (ELISA OD) values, to monitor the prevalence of BKD in natural and hatchery-reared Chinook salmon O. tshawytscha from Grande Ronde and Imnaha basin streams in northeast Oregon. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 14. [Article] Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska

  The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study ...

  Citation × Citation Citation Abstract Copy Title: Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska Author: Tsunoda, Setsuwo The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study were to describe the movements of sockeye salmon on the spawning ground of an entire small stream, to determine factors related to such movements, and to consider the significance of the movements to the species. The spawning run was inventoried at a weir located near the mouth of the tributary. Portions of the run were sampled as they immigrated, and the sampled fish were tagged to enable subsequent identification of individual fish on the spawning ground. Following the initial immigration, daily observations were made to ascertain the location of all fish and the activities of the tagged fish. Tagging had no material effect on either dispersal in the stream or pairing of spawners. The spawning run totalled 2,495; the ratio of males to females was 2.27:1.00, The run consisted preponderantly of males that had spent two winters in the ocean (two ocean-years) and females that had spent three winters in the ocean (three ocean-years). They entered the tributary over a period of 14 days in two waves separated by an interval of three days. The overall median life span in the stream was 12 days in the first wave and eight days in the second wave. The difference was primarily due to predation on the salmon by the brown bear (Ursus arctos). The average female established a redd in 1.4 days; thereafter the females rarely moved far from their redds. The average male required 2.3 days to establish himself in a spawning locale; thereafter most males remained within a relatively small area. The males showed a decided tendency to remain in areas with a high density of females on redds. Fewer females than males overshot their spawning sites. No relation was found between the movements of spawners and either variations of water level or surface water temperature of the stream. Bear predation disrupted spawning activities only locally and temporarily. Males of three ocean-years paired with more females per male than did males of one or two ocean-years. But because of their greater numbers two-ocean-year males participated in more spawnings than did three-ocean-year males. The mean duration of pairing of a particular male with a particular female on a redd was 1.25 days. I concluded that homing within the tributary did not occur; therefore its spawning stock must be a homogeneous unit. The role of the male is primarily one of fertilization of the eggs, not one of defense of territory. Because of the abnormally high ratio of males to females, competition between males for spawning partners resulted in most males of one or two ocean-years being relegated to attend females paired with larger males. Conflict among the males was apparently largely confined within two separate classes of males: males 50 cm or shorter jockeyed among themselves for seemingly preferred positions of attendance next to a pair on a redd, while males 51 cm or longer competed for spawning partners. The polygamous habit in sockeye salmon usually results in a seeming excess of males on the spawning ground beyond the number required to fertilize the eggs. I propose that this "surplus" of males provides a safety factor in times of low numbers in a stock and the competition needed to disperse the males among the available females; both provisions insure fertilization of the available eggs, However, crucial experiments need to be done on an entire population of sockeye salmon with artificially reduced ratios of males to females to determine whether the movements of the spawners would result in an efficiency of egg fertilization sufficient to make harvesting of the "surplus" males feasible. Title: Movements of spawning sockeye salmon in Hidden Creek, Brooks Lake, Alaska Author: Tsunoda, Setsuwo The movements of a population of adult sockeye salmon (Oncorhynchus nerka) were followed in a small tributary of Brooks Lake, Alaska until spawning was nearly complete in 1963. The objectives of the study were to describe the movements of sockeye salmon on the spawning ground of an entire small stream, to determine factors related to such movements, and to consider the significance of the movements to the species. The spawning run was inventoried at a weir located near the mouth of the tributary. Portions of the run were sampled as they immigrated, and the sampled fish were tagged to enable subsequent identification of individual fish on the spawning ground. Following the initial immigration, daily observations were made to ascertain the location of all fish and the activities of the tagged fish. Tagging had no material effect on either dispersal in the stream or pairing of spawners. The spawning run totalled 2,495; the ratio of males to females was 2.27:1.00, The run consisted preponderantly of males that had spent two winters in the ocean (two ocean-years) and females that had spent three winters in the ocean (three ocean-years). They entered the tributary over a period of 14 days in two waves separated by an interval of three days. The overall median life span in the stream was 12 days in the first wave and eight days in the second wave. The difference was primarily due to predation on the salmon by the brown bear (Ursus arctos). The average female established a redd in 1.4 days; thereafter the females rarely moved far from their redds. The average male required 2.3 days to establish himself in a spawning locale; thereafter most males remained within a relatively small area. The males showed a decided tendency to remain in areas with a high density of females on redds. Fewer females than males overshot their spawning sites. No relation was found between the movements of spawners and either variations of water level or surface water temperature of the stream. Bear predation disrupted spawning activities only locally and temporarily. Males of three ocean-years paired with more females per male than did males of one or two ocean-years. But because of their greater numbers two-ocean-year males participated in more spawnings than did three-ocean-year males. The mean duration of pairing of a particular male with a particular female on a redd was 1.25 days. I concluded that homing within the tributary did not occur; therefore its spawning stock must be a homogeneous unit. The role of the male is primarily one of fertilization of the eggs, not one of defense of territory. Because of the abnormally high ratio of males to females, competition between males for spawning partners resulted in most males of one or two ocean-years being relegated to attend females paired with larger males. Conflict among the males was apparently largely confined within two separate classes of males: males 50 cm or shorter jockeyed among themselves for seemingly preferred positions of attendance next to a pair on a redd, while males 51 cm or longer competed for spawning partners. The polygamous habit in sockeye salmon usually results in a seeming excess of males on the spawning ground beyond the number required to fertilize the eggs. I propose that this "surplus" of males provides a safety factor in times of low numbers in a stock and the competition needed to disperse the males among the available females; both provisions insure fertilization of the available eggs, However, crucial experiments need to be done on an entire population of sockeye salmon with artificially reduced ratios of males to females to determine whether the movements of the spawners would result in an efficiency of egg fertilization sufficient to make harvesting of the "surplus" males feasible. Close

• 15. [Article] Differential use of salmon by vertebrate consumers: implications for conservation

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/

  Citation × Citation Citation Abstract Copy Title: Differential use of salmon by vertebrate consumers: implications for conservation Author: Allen, Jennifer M., Wilmers, Christopher C., Wheat, Rachel E., Levi, Taal This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Title: Differential use of salmon by vertebrate consumers: implications for conservation Author: Allen, Jennifer M., Wilmers, Christopher C., Wheat, Rachel E., Levi, Taal This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Close

• 16. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Grande Ronde and Imnaha river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1997 and 1998 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 1999 return of adult Chinook salmon, and the collection of eggs for the 1999 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 1999 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 1999. The main objective of this report is to document and evaluate salmon culture performance for spring Chinook salmon hatchery programs and achievement of management objectives in the Grande Ronde and Imnaha river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1997 and 1998 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 1999 return of adult Chinook salmon, and the collection of eggs for the 1999 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 17. [Article] Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report

  Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate ...

  Citation × Citation Citation Abstract Copy Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate salmon culture performance and achievement of management objectives for spring Chinook salmon hatchery programs in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1998 and 1999 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2000 return of adult Chinook salmon, and the collection of eggs for the 2000 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Title: Lower Snake River Compensation Plan; Oregon Spring Chinook Salmon Evaluation Studies - 2000 Annual Progress Report Abstract -- This report summarizes spring Chinook salmon monitoring data for the Lower Snake River Compensation Plan (LSRCP) facilities in 2000. The main objective of this report is to document and evaluate salmon culture performance and achievement of management objectives for spring Chinook salmon hatchery programs in the Imnaha and Grande Ronde river basins. These data are used to design culture practices to optimize egg-to-smolt survival rate, smolt quality and smolt-to-adult survival rate. This report provides information on rearing and release operations for the 1998 and 1999 cohorts of juvenile Chinook salmon, the collection, spawning and adult characteristics for the 2000 return of adult Chinook salmon, and the collection of eggs for the 2000 cohort. Lower Snake River Compensation Plan (LSRCP) ODFW- Eastern Oregon Fish Research (EOFR) Close

• 18. [Article] Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin

  Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal ...

  Citation × Citation Citation Abstract Copy Title: Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal mitigation obligations. The goal of this project was to provide information on spawning distribution of winter steelhead above and below Foster Dam considering the influence of upstream fish passage and outplanting procedures. Data were collected by conducting spawning ground surveys throughout the South Santiam subbasin using a spatially-balanced design during the 2015/2016 and 2016/2017 spawning seasons. During the 2016/2017 season additional surveys were conducted explicitly to determine the amount of overlap between winter-run and non-native, hatchery summer-run steelhead on the spawning grounds. Generally, both summer- and winter-run steelhead spawned in the upper reaches of streams and near Foster Dam. There was a six-week separation between the end of summer-run spawning and the onset of winter-run spawning. Outplanting methods for both runs have been consistent since at least 2006 and we found no evidence of negative impacts of the program on prespawn mortality. The spatiallybalanced survey design resulted in a threefold increase in miles surveyed compared to traditional index surveys and provided information regarding the distribution of spawning activity in the South Santiam subbasin that was lacking. The South Santiam River does not have any fish counting stations and, other than fish volitionally entering the trap at Foster Dam, there is no way to know how many fish enter the subbasin. Continued spawning ground surveys, a video monitoring system at Lebanon Dam, or both are needed to monitor these ESA-listed fish in the subbasin and evaluate the possible negative effects of the hatchery program and outplanting procedures. Title: Willamette BiOp - Evaluation of the Trap and Transport of Adult Steelhead Above USACE Project Dams in the Upper Willamette Basin Abstract -- Wild, winter-run steelhead are trapped and transported above US Army Corps dams in the Willamette River basin in an effort to reintroduce these fish into historical habitats as part of federal mitigation obligations. The goal of this project was to provide information on spawning distribution of winter steelhead above and below Foster Dam considering the influence of upstream fish passage and outplanting procedures. Data were collected by conducting spawning ground surveys throughout the South Santiam subbasin using a spatially-balanced design during the 2015/2016 and 2016/2017 spawning seasons. During the 2016/2017 season additional surveys were conducted explicitly to determine the amount of overlap between winter-run and non-native, hatchery summer-run steelhead on the spawning grounds. Generally, both summer- and winter-run steelhead spawned in the upper reaches of streams and near Foster Dam. There was a six-week separation between the end of summer-run spawning and the onset of winter-run spawning. Outplanting methods for both runs have been consistent since at least 2006 and we found no evidence of negative impacts of the program on prespawn mortality. The spatiallybalanced survey design resulted in a threefold increase in miles surveyed compared to traditional index surveys and provided information regarding the distribution of spawning activity in the South Santiam subbasin that was lacking. The South Santiam River does not have any fish counting stations and, other than fish volitionally entering the trap at Foster Dam, there is no way to know how many fish enter the subbasin. Continued spawning ground surveys, a video monitoring system at Lebanon Dam, or both are needed to monitor these ESA-listed fish in the subbasin and evaluate the possible negative effects of the hatchery program and outplanting procedures. Close

• 19. [Article] Effective size of a wild salmonid population is greatly reduced by hatchery supplementation

  This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the ...

  Citation × Citation Citation Abstract Copy Title: Effective size of a wild salmonid population is greatly reduced by hatchery supplementation Author: Blouin, M. S., French, R. A., Marine, M. L., Christie, M. R., Waples, R. S. This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Title: Effective size of a wild salmonid population is greatly reduced by hatchery supplementation Author: Blouin, M. S., French, R. A., Marine, M. L., Christie, M. R., Waples, R. S. This is the publisher’s final pdf. The published article is copyrighted by Macmillan Publishers Limited and the Nature Publishing Group and can be found at: http://www.nature.com/hdy/index.html. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. Close

• 20. [Article] Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit

  Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships ...

  Citation × Citation Citation Abstract Copy Title: Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships we linked multi-year data sets of overwinter survival rates from three streams within the Oregon Coast Coho Evolutionarily Significant Unit (OCC) to summer parr abundance estimates from calibrated OCC-wide snorkel survey counts to estimate annual Coho Salmon smolt abundance from 2000-2017. Smolt abundance estimates ranged from a low of 0.9 million in 2000 to a high of 4.1 million in 2013 within the OCC. Accuracy of the smolt abundance estimates was tested using two datasets: (i) adult abundance modeled from the corresponding smolt abundance estimate was compared with adult abundance derived empirically from spawning ground surveys and (ii) our smolt abundance estimates were compared with smolt abundance estimates from trapping efforts in select basins within the OCC. Adult abundance modeled from smolt abundance estimates was highly correlated with adult abundance from spawning ground surveys (r = 0.88, p < 0.001) and smolt abundance estimates correlated with abundance from smolt trapping efforts (r = 0.81, p <0.001). Graphical relationships between smolt abundance and parental abundance suggest that freshwater productivity may be limited in the OCC by density dependent processes at spawner levels observed since 1998. Additionally, smolt abundance estimates have potential use as a variable in adult forecast models and could be used to assess trends in freshwater productivity and to probe factors of density dependence. Title: Information Report 2018-04, Smolt Abundance Estimates for the Oregon Coast Coho Evolutionarily Significant Unit Abstract -- Analysis of Coho Salmon (Oncorhynchus kisutch) smolt abundance can provide insight on freshwater habitat capacity and factors affecting salmonid persistence. To explore these relationships we linked multi-year data sets of overwinter survival rates from three streams within the Oregon Coast Coho Evolutionarily Significant Unit (OCC) to summer parr abundance estimates from calibrated OCC-wide snorkel survey counts to estimate annual Coho Salmon smolt abundance from 2000-2017. Smolt abundance estimates ranged from a low of 0.9 million in 2000 to a high of 4.1 million in 2013 within the OCC. Accuracy of the smolt abundance estimates was tested using two datasets: (i) adult abundance modeled from the corresponding smolt abundance estimate was compared with adult abundance derived empirically from spawning ground surveys and (ii) our smolt abundance estimates were compared with smolt abundance estimates from trapping efforts in select basins within the OCC. Adult abundance modeled from smolt abundance estimates was highly correlated with adult abundance from spawning ground surveys (r = 0.88, p < 0.001) and smolt abundance estimates correlated with abundance from smolt trapping efforts (r = 0.81, p <0.001). Graphical relationships between smolt abundance and parental abundance suggest that freshwater productivity may be limited in the OCC by density dependent processes at spawner levels observed since 1998. Additionally, smolt abundance estimates have potential use as a variable in adult forecast models and could be used to assess trends in freshwater productivity and to probe factors of density dependence. Close