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• 1. [Article] Effects of estuarine circulation patterns and stress on the migratory behavior of juvenile salmonids (Oncorhynchus sp.)

  For the first objective of this thesis, we attempt to understand the role of water flow and directionality in determining steelhead (Oncorhynchus mykiss) and spring/summer and fall Chinook (O. tschawytscha) ...

  Citation × Citation Citation Abstract Copy Title: Effects of estuarine circulation patterns and stress on the migratory behavior of juvenile salmonids (Oncorhynchus sp.) Author: Truelove, Nathan Kobun For the first objective of this thesis, we attempt to understand the role of water flow and directionality in determining steelhead (Oncorhynchus mykiss) and spring/summer and fall Chinook (O. tschawytscha) migration patterns within the Columbia River Estuary and plume by integrating recent advances in biotelemetry and environmental observation and forecasting systems (EOFS). The underlying methodology included analysis of the spatial and temporal movements of juvenile outmigrant salmonids with hydrological data from the CORIE modeling system (http://www.ccalmr.ogi.edu/CORIE). The CORIE modeling system, an EOFS for the Columbia River and nearshore environment, integrates a real-time sensor network, data management system and advanced 3-dimensional numerical models. Numerical simulations of key physical variables (water level, velocities, and directionality) were generated for the precise time and location that individual juvenile salmonids implanted with radio transmitters were present in the Columbia River Estuary. Five general behavioral trends were evident from these simulations: i) passive movement (drifting) during ebb tides, ii) active swimming with the current during ebb tides, iii) active swimming against the current during flood tides, iv) active swimming cross current during flood tides, and v) passive drifting during flood tide. Direction of water flow had a significant effect on fish velocity. All fish types showed a positive relationship between fish velocity and simulated drifter velocity with outgoing water flow. During slack water flow (< 0.25 m/s), this relationship was only observed in barged fall Chinook. With incoming water flow, spring/summer and fall Chinook fish types showed no relationship, whereas steelhead did. Analysis over a three-year period suggested that data from the CORIE modeling system corresponded well with juvenile salmonid migratory behavior and that the model may be a useful tool for evaluating the impact of different hydrological regimes on fish movement. The secondary objective of this thesis evaluated the effects of both acute and chronic crowding stressors on the migratory behavior of hatchery reared juvenile steelhead released into Abernathy Creek, a tributary of the Columbia River Estuary, Washington. The acute stress treatment consisted of surgical implantation of a NanoTag radio transmitter (Lotek Wireless, Canada), followed by 6 hours of crowding immediately prior to release. The chronic stress treatment consisted of surgical implantation of a PIT-tag (Digital Angel Corporation), 36 days of acclimation, followed by 3 weeks of crowding in low water conditions prior to release. Short-term migratory success of steelhead that received the acute stress treatment was determined by radio telemetry. Numbers of migrating fish that received experimental stress treatments and their speed was determined by both mobile radio telemetry and stationary PIT-tag and radio-tag interrogation systems already established on Abernathy Creek. Acute and chronic stress treatments both significantly delayed migration by 2 to 10 days, respectively, compared to controls. Furthermore, the acute stress treatment significantly decreased the both the rate of migration and numbers of juvenile steelhead that successfully migrated out of Abernathy creek. Title: Effects of estuarine circulation patterns and stress on the migratory behavior of juvenile salmonids (Oncorhynchus sp.) Author: Truelove, Nathan Kobun For the first objective of this thesis, we attempt to understand the role of water flow and directionality in determining steelhead (Oncorhynchus mykiss) and spring/summer and fall Chinook (O. tschawytscha) migration patterns within the Columbia River Estuary and plume by integrating recent advances in biotelemetry and environmental observation and forecasting systems (EOFS). The underlying methodology included analysis of the spatial and temporal movements of juvenile outmigrant salmonids with hydrological data from the CORIE modeling system (http://www.ccalmr.ogi.edu/CORIE). The CORIE modeling system, an EOFS for the Columbia River and nearshore environment, integrates a real-time sensor network, data management system and advanced 3-dimensional numerical models. Numerical simulations of key physical variables (water level, velocities, and directionality) were generated for the precise time and location that individual juvenile salmonids implanted with radio transmitters were present in the Columbia River Estuary. Five general behavioral trends were evident from these simulations: i) passive movement (drifting) during ebb tides, ii) active swimming with the current during ebb tides, iii) active swimming against the current during flood tides, iv) active swimming cross current during flood tides, and v) passive drifting during flood tide. Direction of water flow had a significant effect on fish velocity. All fish types showed a positive relationship between fish velocity and simulated drifter velocity with outgoing water flow. During slack water flow (< 0.25 m/s), this relationship was only observed in barged fall Chinook. With incoming water flow, spring/summer and fall Chinook fish types showed no relationship, whereas steelhead did. Analysis over a three-year period suggested that data from the CORIE modeling system corresponded well with juvenile salmonid migratory behavior and that the model may be a useful tool for evaluating the impact of different hydrological regimes on fish movement. The secondary objective of this thesis evaluated the effects of both acute and chronic crowding stressors on the migratory behavior of hatchery reared juvenile steelhead released into Abernathy Creek, a tributary of the Columbia River Estuary, Washington. The acute stress treatment consisted of surgical implantation of a NanoTag radio transmitter (Lotek Wireless, Canada), followed by 6 hours of crowding immediately prior to release. The chronic stress treatment consisted of surgical implantation of a PIT-tag (Digital Angel Corporation), 36 days of acclimation, followed by 3 weeks of crowding in low water conditions prior to release. Short-term migratory success of steelhead that received the acute stress treatment was determined by radio telemetry. Numbers of migrating fish that received experimental stress treatments and their speed was determined by both mobile radio telemetry and stationary PIT-tag and radio-tag interrogation systems already established on Abernathy Creek. Acute and chronic stress treatments both significantly delayed migration by 2 to 10 days, respectively, compared to controls. Furthermore, the acute stress treatment significantly decreased the both the rate of migration and numbers of juvenile steelhead that successfully migrated out of Abernathy creek. Close

• 2. [Article] Juvenile coho salmon movement and migration through tide gates

  Tidal marshlands in the upper estuary ecotone provide essential habitat for juvenile salmonids. In this environment, salmonids grow rapidly and acclimate to saltwater. Worldwide, tidal marshes have been ...

  Citation × Citation Citation Abstract Copy Title: Juvenile coho salmon movement and migration through tide gates Author: Bass, Arthur Langer Tidal marshlands in the upper estuary ecotone provide essential habitat for juvenile salmonids. In this environment, salmonids grow rapidly and acclimate to saltwater. Worldwide, tidal marshes have been diked and drained to provide agricultural and residential land. Tide gates are one-way doors integrated into dike systems that prevent saltwater flooding and allow upland drainage to the estuary during low tide. By preventing tidal exchange, tide gates have significant upstream effects on water temperature and chemistry, plant and animal community structure, and geomorphology. Since they are closed most of the day and may be difficult to pass when open, tide gates may act as fish passage barriers for juvenile salmonids. They may also affect juvenile salmon migration timing by altering environmental variables that influence emigration rate in upstream habitats. We conducted our research in Coos Bay, one of the many Oregon estuaries with extensive use of tide gates. We studied three streams, one with a top-hinged tide gate, one with a side-hinged gate, and one without any tide gates that acted as our reference site. Our study species was coho salmon, Oncorhynchus kisutch, which may encounter tide gates both in the subyearling and smolt life stages in our study streams. Our objectives were to: 1) quantify upstream and downstream fish passage occurrence at all three sites, 2) determine whether juvenile coho salmon passage is associated with a specific range of gate conditions, and 3) identify any associations between coho smolt emigration rate and environmental variables that are influenced by tide gates. We installed stationary passive integrated transponder (PIT) antennae around both tide gates and a tidal channel in the non-gated stream to record the movement of PIT tagged juvenile coho salmon. Coho salmon smolts passed upstream most frequently at the non-gated channel (48% of all smolts detected at the array), next the side-hinged gate (28%), and lastly, the top-hinged gate (3%). Juvenile coho salmon passed more frequently at a specific range of gate angles and tailwater depths at both top hinged and side-hinged tide gates. Smolts passed downstream more frequently at greater gate angles and tailwater depths than available on average at both tide gates. Subyearlings passed upstream more frequently during small gate angles and a narrow range of tailwater depths at the top-hinged gate but did not pass more frequently under a particular range of conditions at the side-hinged gate. At the top-hinged gate, conditions favorable for subyearling upstream passage occurred towards the end of the gate open period and therefore subyearlings were severely limited in their opportunities for passage. At multiple sites, emigration rate was associated with environmental variables that may be altered by tide gates. Increases in water temperature were associated with an increasing likelihood of smolt emigration at multiple sites. At a tide gate that allowed upstream estuarine influence, increasing salinity was associated with a decreasing likelihood of emigration. Our results suggest that tide gates may interfere with salmonid movement and migration by creating physical barriers to fish passage and potentially influencing migratory timing by altering environmental variables. When installing or retrofitting tide gates, these factors should be taken into consideration since a tide gate's design may determine the severity of its effects on salmonids. Our work should be considered a case study and the findings should not be assumed to be transferable due to the great diversity of tide gate installations in use. We recommend further research, including a more in depth analysis of the affects of tide gates on subyearling coho salmon and an investigation of piscivorous predator exploitation of tide gates. Title: Juvenile coho salmon movement and migration through tide gates Author: Bass, Arthur Langer Tidal marshlands in the upper estuary ecotone provide essential habitat for juvenile salmonids. In this environment, salmonids grow rapidly and acclimate to saltwater. Worldwide, tidal marshes have been diked and drained to provide agricultural and residential land. Tide gates are one-way doors integrated into dike systems that prevent saltwater flooding and allow upland drainage to the estuary during low tide. By preventing tidal exchange, tide gates have significant upstream effects on water temperature and chemistry, plant and animal community structure, and geomorphology. Since they are closed most of the day and may be difficult to pass when open, tide gates may act as fish passage barriers for juvenile salmonids. They may also affect juvenile salmon migration timing by altering environmental variables that influence emigration rate in upstream habitats. We conducted our research in Coos Bay, one of the many Oregon estuaries with extensive use of tide gates. We studied three streams, one with a top-hinged tide gate, one with a side-hinged gate, and one without any tide gates that acted as our reference site. Our study species was coho salmon, Oncorhynchus kisutch, which may encounter tide gates both in the subyearling and smolt life stages in our study streams. Our objectives were to: 1) quantify upstream and downstream fish passage occurrence at all three sites, 2) determine whether juvenile coho salmon passage is associated with a specific range of gate conditions, and 3) identify any associations between coho smolt emigration rate and environmental variables that are influenced by tide gates. We installed stationary passive integrated transponder (PIT) antennae around both tide gates and a tidal channel in the non-gated stream to record the movement of PIT tagged juvenile coho salmon. Coho salmon smolts passed upstream most frequently at the non-gated channel (48% of all smolts detected at the array), next the side-hinged gate (28%), and lastly, the top-hinged gate (3%). Juvenile coho salmon passed more frequently at a specific range of gate angles and tailwater depths at both top hinged and side-hinged tide gates. Smolts passed downstream more frequently at greater gate angles and tailwater depths than available on average at both tide gates. Subyearlings passed upstream more frequently during small gate angles and a narrow range of tailwater depths at the top-hinged gate but did not pass more frequently under a particular range of conditions at the side-hinged gate. At the top-hinged gate, conditions favorable for subyearling upstream passage occurred towards the end of the gate open period and therefore subyearlings were severely limited in their opportunities for passage. At multiple sites, emigration rate was associated with environmental variables that may be altered by tide gates. Increases in water temperature were associated with an increasing likelihood of smolt emigration at multiple sites. At a tide gate that allowed upstream estuarine influence, increasing salinity was associated with a decreasing likelihood of emigration. Our results suggest that tide gates may interfere with salmonid movement and migration by creating physical barriers to fish passage and potentially influencing migratory timing by altering environmental variables. When installing or retrofitting tide gates, these factors should be taken into consideration since a tide gate's design may determine the severity of its effects on salmonids. Our work should be considered a case study and the findings should not be assumed to be transferable due to the great diversity of tide gate installations in use. We recommend further research, including a more in depth analysis of the affects of tide gates on subyearling coho salmon and an investigation of piscivorous predator exploitation of tide gates. Close