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• 1. [Article] Behavioral responses of Atlantic cod to sea temperature changes

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/jo...

  Citation × Citation Citation Abstract Copy Title: Behavioral responses of Atlantic cod to sea temperature changes Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758 Title: Behavioral responses of Atlantic cod to sea temperature changes Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758 Close

• 2. [Article] CiannelliLorenzoCEOASBehavioralResponseAtlantic.pdf

  Citation × Citation Citation Abstract Copy Title: CiannelliLorenzoCEOASBehavioralResponseAtlantic.pdf Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor Title: CiannelliLorenzoCEOASBehavioralResponseAtlantic.pdf Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor Close

• 3. [Article] CiannelliLorenzoCEOASBehavioralResponseAtlanticSupportingInfo.pdf

  Citation × Citation Citation Abstract Copy Title: CiannelliLorenzoCEOASBehavioralResponseAtlanticSupportingInfo.pdf Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor Title: CiannelliLorenzoCEOASBehavioralResponseAtlanticSupportingInfo.pdf Author: Freitas, Carla, Ciannelli, Lorenzo, Olsen, Esben Moland, Moland, Even, Knutsen, Halvor Close

• 4. [Article] Examining ectomycorrhizal communities of ponderosa pine and lodgepole pine in the south-central Oregon pumice zone

  Background information is presented that provides historical perspectives on the field of mycology in the Pacific Northwest and its role in forest management. The series of events and decisions that have ...

  Citation × Citation Citation Abstract Copy Title: Examining ectomycorrhizal communities of ponderosa pine and lodgepole pine in the south-central Oregon pumice zone Author: Garcia, Maria Osuna Background information is presented that provides historical perspectives on the field of mycology in the Pacific Northwest and its role in forest management. The series of events and decisions that have led to previous studies (or lack of studies) in the field also dictate the directions of current research. Culture, philosophy, and history all play a role in the questions that may be asked today. Examining the past gives light to the questions that are asked in the present and future. Forest ecosystems of the Pacific Northwest are changing as a result of climate change. Rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. As environmental conditions change, Pinus ponderosa may establish within the historic Pinus contorta range. Successful pine species migration will be constrained by the distribution or co-migration of ectomycorrhizal fungi (EMF). Knowledge of the linkages among soil fungal diversity, community structure, and environmental factors is critical to understanding the organization and stability of pine ecosystems. The objectives of this study are to establish an informational foundation of the EMF communities of P. ponderosa and P. contorta in the Deschutes National Forest and to examine soil characteristics associated with community composition. We examined EMF root tips of P. ponderosa and P. contorta in soil cores and conducted soil chemistry analysis for P. ponderosa. Results indicate that Cenococcum geophilum, Rhizopogon salebrosus, and Inocybe flocculosa are dominant in both P. contorta and P. ponderosa soil cores. Rhizopogon spp. were ubiquitous in P. ponderosa. There was no significant difference between EMF communities of P. ponderosa and P. contorta at the species level. Ordination analysis suggests that pH, Bray-phosphorus, total phosphorus (P), carbon (C), mineralizable nitrogen (N), ammonium (NH₄) and nitrate (NO₃) are driving EMF community composition in P. ponderosa. We found a significant linear relationship between EMF species richness and mineralizable N. Title: Examining ectomycorrhizal communities of ponderosa pine and lodgepole pine in the south-central Oregon pumice zone Author: Garcia, Maria Osuna Background information is presented that provides historical perspectives on the field of mycology in the Pacific Northwest and its role in forest management. The series of events and decisions that have led to previous studies (or lack of studies) in the field also dictate the directions of current research. Culture, philosophy, and history all play a role in the questions that may be asked today. Examining the past gives light to the questions that are asked in the present and future. Forest ecosystems of the Pacific Northwest are changing as a result of climate change. Rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. As environmental conditions change, Pinus ponderosa may establish within the historic Pinus contorta range. Successful pine species migration will be constrained by the distribution or co-migration of ectomycorrhizal fungi (EMF). Knowledge of the linkages among soil fungal diversity, community structure, and environmental factors is critical to understanding the organization and stability of pine ecosystems. The objectives of this study are to establish an informational foundation of the EMF communities of P. ponderosa and P. contorta in the Deschutes National Forest and to examine soil characteristics associated with community composition. We examined EMF root tips of P. ponderosa and P. contorta in soil cores and conducted soil chemistry analysis for P. ponderosa. Results indicate that Cenococcum geophilum, Rhizopogon salebrosus, and Inocybe flocculosa are dominant in both P. contorta and P. ponderosa soil cores. Rhizopogon spp. were ubiquitous in P. ponderosa. There was no significant difference between EMF communities of P. ponderosa and P. contorta at the species level. Ordination analysis suggests that pH, Bray-phosphorus, total phosphorus (P), carbon (C), mineralizable nitrogen (N), ammonium (NH₄) and nitrate (NO₃) are driving EMF community composition in P. ponderosa. We found a significant linear relationship between EMF species richness and mineralizable N. Close

• 5. [Article] Climate effects on red alder growth in the Pacific Northwest of North America

  This is the author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/forest-ecology-...

  Citation × Citation Citation Abstract Copy Title: Climate effects on red alder growth in the Pacific Northwest of North America Author: Hibbs, D. E., Cortini, F., Bluhm, A., Wang, T., Comeau, P. G. This is the author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/forest-ecology-and-management/. Title: Climate effects on red alder growth in the Pacific Northwest of North America Author: Hibbs, D. E., Cortini, F., Bluhm, A., Wang, T., Comeau, P. G. This is the author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Elsevier and can be found at: http://www.journals.elsevier.com/forest-ecology-and-management/. Close

• 6. [Article] Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality

  The Appendix is available online: http://dx.doi.org/10.1890/14-1591.1.sm

  Citation × Citation Citation Abstract Copy Title: Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality Author: Bruggeman, Jason E., Nigro, Debora, Swem, Ted, Kennedy, Patricia L., Andersen, David E. The Appendix is available online: http://dx.doi.org/10.1890/14-1591.1.sm Title: Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality Author: Bruggeman, Jason E., Nigro, Debora, Swem, Ted, Kennedy, Patricia L., Andersen, David E. The Appendix is available online: http://dx.doi.org/10.1890/14-1591.1.sm Close

• 7. [Article] Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality

  Appendix A is available online: http://dx.doi.org/10.1890/14-1591.1.sm

  Citation × Citation Citation Abstract Copy Title: Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality Author: Bruggeman, Jason E., Nigro, Debora, Andersen, David E., Kennedy, Patricia L., Swem, Ted Appendix A is available online: http://dx.doi.org/10.1890/14-1591.1.sm Title: Dynamics of a recovering Arctic bird population: the importance of climate, density dependence, and site quality Author: Bruggeman, Jason E., Nigro, Debora, Andersen, David E., Kennedy, Patricia L., Swem, Ted Appendix A is available online: http://dx.doi.org/10.1890/14-1591.1.sm Close

• 8. [Article] Managing for climate change on federal lands of the western United States: perceived usefulness of climate science, effectiveness of adaptation strategies, and barriers to implementation

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Resilience Alliance. The published article can be found at: http://www.ecologyandsociety.org/

  Citation × Citation Citation Abstract Copy Title: Managing for climate change on federal lands of the western United States: perceived usefulness of climate science, effectiveness of adaptation strategies, and barriers to implementation Author: Klos, P. Zion, Blades, Jarod J., Hall, Troy E., et al., Kemp, Kerry B. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Resilience Alliance. The published article can be found at: http://www.ecologyandsociety.org/ Title: Managing for climate change on federal lands of the western United States: perceived usefulness of climate science, effectiveness of adaptation strategies, and barriers to implementation Author: Klos, P. Zion, Blades, Jarod J., Hall, Troy E., et al., Kemp, Kerry B. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Resilience Alliance. The published article can be found at: http://www.ecologyandsociety.org/ Close

• 9. [Article] Contrasting demographic history and gene flow patterns of two mangrove species on either side of the Central American Isthmus

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/jo...

  Citation × Citation Citation Abstract Copy Title: Contrasting demographic history and gene flow patterns of two mangrove species on either side of the Central American Isthmus Author: Cerón‐Souza, Ivania, Schwarzbach, Andrea E., Gonzalez, Elena G. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758 Title: Contrasting demographic history and gene flow patterns of two mangrove species on either side of the Central American Isthmus Author: Cerón‐Souza, Ivania, Schwarzbach, Andrea E., Gonzalez, Elena G. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by John Wiley & Sons Ltd. The published article can be found at: http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758 Close

• 10. [Article] Potential effects of climate change and fire management on fire behavior and vegetation patterns on an east Cascades landscape

  Climate exerts considerable control on wildfire regimes, and climate and wildfire are both major drivers of forest growth and succession in interior Northwest forests. Estimating potential response of ...

  Citation × Citation Citation Abstract Copy Title: Potential effects of climate change and fire management on fire behavior and vegetation patterns on an east Cascades landscape Author: Greaves, Heather E. Climate exerts considerable control on wildfire regimes, and climate and wildfire are both major drivers of forest growth and succession in interior Northwest forests. Estimating potential response of these landscapes to anticipated changes in climate helps researchers and land managers understand and mitigate impacts of climate change on important ecological and economic resources. Spatially explicit, mechanistic computer simulation models are powerful tools that permit researchers to incorporate climate and disturbance events along with vegetation physiology and phenology to explore complex potential effects of climate change over wide spatial and temporal scales. In this thesis, I used the simulation model FireBGCv2 to characterize potential response of fire, vegetation, and landscape dynamics to a range of possible future climate and fire management scenarios. The simulation landscape (~43,000 hectares) is part of Deschutes National Forest, which is located at the interface of maritime and continental climates and is known for its beauty and ecological diversity. Simulation scenarios included all combinations of +0°C, +3°C, and +6°C of warming; +10%, ±0%, and -10% historical precipitation; and 10% and 90% fire suppression, and were run for 500 years. To characterize fire dynamics, I investigated how mean fire frequency, intensity, and fuel loadings changed over time in all scenarios, and how fire and tree mortality interacted over time. To explore vegetation and landscape dynamics, I described the distribution and spatial arrangement of vegetation types and forest successional stages on the landscape, and used a nonmetric multidimensional scaling (NMS) ordination to holistically evaluate overall similarity of composition, structure, and landscape pattern among all simulation scenarios over time. Changes in precipitation had little effect on fire characteristics or vegetation and landscape characteristics, indicating that simulated precipitation changes were not sufficient to significantly affect vegetation moisture stress or fire behavior on this landscape. Current heavy fuel loads controlled early fire dynamics, with high mean fire intensities occurring early in all simulations. Increases in fire frequency accompanied all temperature increases, leading to decreasing fuel loads and fire intensities over time in warming scenarios. With no increase in temperature or in fire frequency, high fire intensities and heavier fuel loads were sustained. Over time, more fire associated with warming or less fire suppression increased the percentage of the landscape occupied by non-forest and fire-sensitive early seral forest successional stages, which tended to increase the percentage of fire area burning at high severity (in terms of tree mortality). This fire-vegetation relationship may reflect a return to a more historical range of conditions on this landscape. Higher temperatures and fire frequency led to significant spatial migration of forest types across the landscape, with communities at the highest and lowest elevations particularly affected. Warming led to an upslope shift of warm mixed conifer and ponderosa pine (Pinus ponderosa) forests, severely contracting (under 3° of warming) or eliminating (under 6° of warming) area dominated by mountain hemlock (Tsuga mertensiana) and cool, wet conifer forest in the high western portion of the landscape. In lower elevations, warming and fire together contributed to significant expansion of open (<10% tree canopy cover) forest and grass- and shrubland. The compositional changes and spatial shifts simulated in the warming scenarios suggest that climate change is likely to significantly affect forests on this landscape. Warming and associated fire also tended to increase heterogeneity of forest structural stages and landscape pattern, resulting in a more diverse distribution of structural stages, especially in lower elevations, and a more divided landscape of smaller forest stands. The NMS ordination emphasized the dissimilarity between the severe +6° scenarios and the other two temperature scenarios. The +0° and +3° scenarios differed from each other in composition (mainly because cool forest was lost in the +3° scenarios), but within a given level of fire suppression they remained remarkably similar in terms of overall composition, structure, and landscape pattern, while the +6° scenarios separated noticeably from them. Such decisive differences suggest that under the simulated ranges of precipitation and fire suppression, the interval between 3 and 6 degrees of warming on this landscape may capture an ecological threshold, or tipping point. Additional simulation research that incorporates (for example) management actions, insects and pathogens, and a wider array of precipitation scenarios could help illuminate more clearly the possible range of future landscape conditions. Still, these results provide a glimpse of potential divergent outcomes on this important landscape under possible future climates, and suggest that these forests will undergo considerable changes from both historical and current conditions in response to higher temperatures expected in this area. Some changes may be inevitable with warming, such as the upslope shift of warm forest types, but careful planning for fire and fuels management might allow land managers to modulate fire behavior and steer vegetation dynamics toward the most desirable outcome possible. Title: Potential effects of climate change and fire management on fire behavior and vegetation patterns on an east Cascades landscape Author: Greaves, Heather E. Climate exerts considerable control on wildfire regimes, and climate and wildfire are both major drivers of forest growth and succession in interior Northwest forests. Estimating potential response of these landscapes to anticipated changes in climate helps researchers and land managers understand and mitigate impacts of climate change on important ecological and economic resources. Spatially explicit, mechanistic computer simulation models are powerful tools that permit researchers to incorporate climate and disturbance events along with vegetation physiology and phenology to explore complex potential effects of climate change over wide spatial and temporal scales. In this thesis, I used the simulation model FireBGCv2 to characterize potential response of fire, vegetation, and landscape dynamics to a range of possible future climate and fire management scenarios. The simulation landscape (~43,000 hectares) is part of Deschutes National Forest, which is located at the interface of maritime and continental climates and is known for its beauty and ecological diversity. Simulation scenarios included all combinations of +0°C, +3°C, and +6°C of warming; +10%, ±0%, and -10% historical precipitation; and 10% and 90% fire suppression, and were run for 500 years. To characterize fire dynamics, I investigated how mean fire frequency, intensity, and fuel loadings changed over time in all scenarios, and how fire and tree mortality interacted over time. To explore vegetation and landscape dynamics, I described the distribution and spatial arrangement of vegetation types and forest successional stages on the landscape, and used a nonmetric multidimensional scaling (NMS) ordination to holistically evaluate overall similarity of composition, structure, and landscape pattern among all simulation scenarios over time. Changes in precipitation had little effect on fire characteristics or vegetation and landscape characteristics, indicating that simulated precipitation changes were not sufficient to significantly affect vegetation moisture stress or fire behavior on this landscape. Current heavy fuel loads controlled early fire dynamics, with high mean fire intensities occurring early in all simulations. Increases in fire frequency accompanied all temperature increases, leading to decreasing fuel loads and fire intensities over time in warming scenarios. With no increase in temperature or in fire frequency, high fire intensities and heavier fuel loads were sustained. Over time, more fire associated with warming or less fire suppression increased the percentage of the landscape occupied by non-forest and fire-sensitive early seral forest successional stages, which tended to increase the percentage of fire area burning at high severity (in terms of tree mortality). This fire-vegetation relationship may reflect a return to a more historical range of conditions on this landscape. Higher temperatures and fire frequency led to significant spatial migration of forest types across the landscape, with communities at the highest and lowest elevations particularly affected. Warming led to an upslope shift of warm mixed conifer and ponderosa pine (Pinus ponderosa) forests, severely contracting (under 3° of warming) or eliminating (under 6° of warming) area dominated by mountain hemlock (Tsuga mertensiana) and cool, wet conifer forest in the high western portion of the landscape. In lower elevations, warming and fire together contributed to significant expansion of open (<10% tree canopy cover) forest and grass- and shrubland. The compositional changes and spatial shifts simulated in the warming scenarios suggest that climate change is likely to significantly affect forests on this landscape. Warming and associated fire also tended to increase heterogeneity of forest structural stages and landscape pattern, resulting in a more diverse distribution of structural stages, especially in lower elevations, and a more divided landscape of smaller forest stands. The NMS ordination emphasized the dissimilarity between the severe +6° scenarios and the other two temperature scenarios. The +0° and +3° scenarios differed from each other in composition (mainly because cool forest was lost in the +3° scenarios), but within a given level of fire suppression they remained remarkably similar in terms of overall composition, structure, and landscape pattern, while the +6° scenarios separated noticeably from them. Such decisive differences suggest that under the simulated ranges of precipitation and fire suppression, the interval between 3 and 6 degrees of warming on this landscape may capture an ecological threshold, or tipping point. Additional simulation research that incorporates (for example) management actions, insects and pathogens, and a wider array of precipitation scenarios could help illuminate more clearly the possible range of future landscape conditions. Still, these results provide a glimpse of potential divergent outcomes on this important landscape under possible future climates, and suggest that these forests will undergo considerable changes from both historical and current conditions in response to higher temperatures expected in this area. Some changes may be inevitable with warming, such as the upslope shift of warm forest types, but careful planning for fire and fuels management might allow land managers to modulate fire behavior and steer vegetation dynamics toward the most desirable outcome possible. Close