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• 1. [Article] Columbia Basin Heritage Fish Consumption Rates

  This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745

  Citation × Citation Citation Abstract Copy Title: Columbia Basin Heritage Fish Consumption Rates Author: Harper, Barbara L., Walker, Deward E., Jr. This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745 Title: Columbia Basin Heritage Fish Consumption Rates Author: Harper, Barbara L., Walker, Deward E., Jr. This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745 Close

• 2. [Article] Water Governance Process Assessment : Evaluating the Link between Decision Making Processes and Outcomes in the Columbia River Basin

  Academics and practitioners agree that in water governance, the quality of a decision making process should influence the quality of the outcome and the degree to which it is accepted by interested parties. ...

  Citation × Citation Citation Abstract Copy Title: Water Governance Process Assessment : Evaluating the Link between Decision Making Processes and Outcomes in the Columbia River Basin Author: Ogren, Kimberly Academics and practitioners agree that in water governance, the quality of a decision making process should influence the quality of the outcome and the degree to which it is accepted by interested parties. However, finding a feasible way to evaluate and then improve the quality of a decision making process has proven elusive. Systematically collecting evidence of a link between process and outcome is also challenging. In my dissertation, I developed a synthesis framework for evaluating and improving water governance decision making to address these two challenges. The synthesis framework, which I call the Water Governance Process Assessment (Water GPA), draws upon 22 existing frameworks rooted in resilience, adaptive governance, and good governance. From these frameworks, I identified and provided a way to evaluate four characteristics critical to good water governance decision making processes: 1) accountability, 2) inclusivity, and 3) information, and 4) context. I applied the Water GPA framework to the recent reviews of the Columbia River Treaty by the United States and Canada. I collected data for the case studies through semi-structured interviews and surveys of process participants from the federal agencies, Tribal and First Nations, state/provincial governments, local governments, stakeholder interests, and citizens. I coded and analyzed the interviews using the qualitative analysis software QSR NVivo and the characteristics identified in the Water GPA framework. I used the two case study applications to demonstrate how to use the framework. I identified what aspects of the four process categories served as barriers and building blocks for good water governance in each water governance process. I also gleaned lessons learned and recommendations including some for determining process leadership, ensuring meaningful engagement and inclusivity, addressing sovereignty issues, setting decision criteria, sharing decision authority, allocating resources in future processes in the US and BC portions of the Columbia River Basin and similar basins. In my case studies, I also investigated which characteristics of the water governance decision making process influenced the direct outcomes of those processes (the decisions) as well as other non-target outcomes (such as trust, co-produced science, new coalitions, etc.). All four characteristics outlined in the Water Governance Process Assessment (Water GPA), played some role in the development of the content and/or support of the two case study decision documents (US Regional Recommendation and BC Provincial Decision). Generally, when the characteristic of the process was done well, it improved the legitimacy and acceptance of the decision. At the same time performing poorly in one area did not necessarily torpedo the process or decision. In both case studies, it appears that the interplay between the process characteristics (that is where two or more characteristics converge) had a greater influence over the decision. Further work is needed to clearly identify what characteristics of a process are most influential in different situations. The Water GPA is one useful tool for this effort. Title: Water Governance Process Assessment : Evaluating the Link between Decision Making Processes and Outcomes in the Columbia River Basin Author: Ogren, Kimberly Academics and practitioners agree that in water governance, the quality of a decision making process should influence the quality of the outcome and the degree to which it is accepted by interested parties. However, finding a feasible way to evaluate and then improve the quality of a decision making process has proven elusive. Systematically collecting evidence of a link between process and outcome is also challenging. In my dissertation, I developed a synthesis framework for evaluating and improving water governance decision making to address these two challenges. The synthesis framework, which I call the Water Governance Process Assessment (Water GPA), draws upon 22 existing frameworks rooted in resilience, adaptive governance, and good governance. From these frameworks, I identified and provided a way to evaluate four characteristics critical to good water governance decision making processes: 1) accountability, 2) inclusivity, and 3) information, and 4) context. I applied the Water GPA framework to the recent reviews of the Columbia River Treaty by the United States and Canada. I collected data for the case studies through semi-structured interviews and surveys of process participants from the federal agencies, Tribal and First Nations, state/provincial governments, local governments, stakeholder interests, and citizens. I coded and analyzed the interviews using the qualitative analysis software QSR NVivo and the characteristics identified in the Water GPA framework. I used the two case study applications to demonstrate how to use the framework. I identified what aspects of the four process categories served as barriers and building blocks for good water governance in each water governance process. I also gleaned lessons learned and recommendations including some for determining process leadership, ensuring meaningful engagement and inclusivity, addressing sovereignty issues, setting decision criteria, sharing decision authority, allocating resources in future processes in the US and BC portions of the Columbia River Basin and similar basins. In my case studies, I also investigated which characteristics of the water governance decision making process influenced the direct outcomes of those processes (the decisions) as well as other non-target outcomes (such as trust, co-produced science, new coalitions, etc.). All four characteristics outlined in the Water Governance Process Assessment (Water GPA), played some role in the development of the content and/or support of the two case study decision documents (US Regional Recommendation and BC Provincial Decision). Generally, when the characteristic of the process was done well, it improved the legitimacy and acceptance of the decision. At the same time performing poorly in one area did not necessarily torpedo the process or decision. In both case studies, it appears that the interplay between the process characteristics (that is where two or more characteristics converge) had a greater influence over the decision. Further work is needed to clearly identify what characteristics of a process are most influential in different situations. The Water GPA is one useful tool for this effort. Close

• 3. [Article] Comparison of Contemporary and Heritage Fish Consumption Rates in the Columbia River Basin

  This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745

  Citation × Citation Citation Abstract Copy Title: Comparison of Contemporary and Heritage Fish Consumption Rates in the Columbia River Basin Author: Harper, Barbara L., Walker, Deward E., Jr. This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745 Title: Comparison of Contemporary and Heritage Fish Consumption Rates in the Columbia River Basin Author: Harper, Barbara L., Walker, Deward E., Jr. This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Springer and can be found at: http://link.springer.com/journal/10745 Close

• 4. [Article] California condors in the Pacific Northwest : integrating history, molecular ecology, and spatial modeling for reintroduction planning

  Reintroduction programs are increasingly being used to save animals from extinction and aid in their recovery. The California Condor (Gymnogyps californianus), one of the most endangered birds in the ...

  Citation × Citation Citation Abstract Copy Title: California condors in the Pacific Northwest : integrating history, molecular ecology, and spatial modeling for reintroduction planning Author: D'Elia, Jesse Reintroduction programs are increasingly being used to save animals from extinction and aid in their recovery. The California Condor (Gymnogyps californianus), one of the most endangered birds in the world, is a remarkable example of how reintroduction programs can help rapidly increase a species' population numbers and range following a population bottleneck. Despite these gains, condors remain a critically endangered species and are absent from the northern half of their historical range. Here I evaluated questions concerning the biological feasibility of reintroducing California Condors to their former range in the Pacific Northwest using a multidisciplinary approach, employing the fields of history, molecular ecology, and spatial modeling. A review of the historical evidence, including the archeological and paleontological record, use of condors in Native American culture, and early historical accounts of explorers and naturalists, suggest that condors were once widely distributed and likely abundant in the Pacific Northwest. It is also likely that they were breeding birds in the region, rather than seasonal migrants. Examination of 526 base pairs from the control region of mitochondrial DNA (mtDNA) harvested from California Condor museum samples (n = 67) and genetic founders of the captive population (n =14) revealed 18 haplotypes in the historical population, 14 of which have not been reported previously. Only three of these haplotypes survived the genetic bottleneck, indicating > 80% reduction in haplotype richness. This substantial loss of genetic diversity is consistent with the hypothesis that condor populations were relatively abundant at the time of Euro-American contact, but declined rapidly as a result of human causes. I found no spatial sorting of haplotypes in the historical population, which suggests historical gene flow between the Pacific Northwest and southern and central California. Therefore, conservation strategies should consider restoring rangewide metapopulation connectivity when planning future reintroductions. Finally, I developed and tested activity-specific ecological niche models (nesting, roosting, and feeding) to identify areas in the Pacific Northwest that have retained ecological characteristics similar to those where condors have been observed in the last several decades. These models were integrated with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability across California, Oregon, and Washington. Ecological niche models were consistent with published knowledge of California Condor ecology, had good predictive performance when tested with data withheld from model development, and identified several candidate reintroduction areas. Results suggest that > 70% of the modeled nesting habitat and > 60% of the modeled roosting and foraging habitat in Washington, Oregon, and California is currently unoccupied. Thus, there are large unoccupied regions of the California Condor’s historical range in the Pacific Northwest that still possess relevant ecological features similar to currently occupied habitats, and therefore warrant consideration for future reintroduction efforts. In summary, this study provides foundational information to inform condor reintroductions to the Pacific Northwest. Key findings include: (1) extensive evidence that condors previously occupied the Pacific Northwest, likely in large numbers, prior to Euro-American expansion; (2) the lack of historical population structure, suggestive of historical gene flow between condor populations in the Pacific Northwest and elsewhere in the range; and, (3) identification of several candidate reintroduction areas in the Pacific Northwest that have retained environmental conditions that appear suitable for condor recovery. Title: California condors in the Pacific Northwest : integrating history, molecular ecology, and spatial modeling for reintroduction planning Author: D'Elia, Jesse Reintroduction programs are increasingly being used to save animals from extinction and aid in their recovery. The California Condor (Gymnogyps californianus), one of the most endangered birds in the world, is a remarkable example of how reintroduction programs can help rapidly increase a species' population numbers and range following a population bottleneck. Despite these gains, condors remain a critically endangered species and are absent from the northern half of their historical range. Here I evaluated questions concerning the biological feasibility of reintroducing California Condors to their former range in the Pacific Northwest using a multidisciplinary approach, employing the fields of history, molecular ecology, and spatial modeling. A review of the historical evidence, including the archeological and paleontological record, use of condors in Native American culture, and early historical accounts of explorers and naturalists, suggest that condors were once widely distributed and likely abundant in the Pacific Northwest. It is also likely that they were breeding birds in the region, rather than seasonal migrants. Examination of 526 base pairs from the control region of mitochondrial DNA (mtDNA) harvested from California Condor museum samples (n = 67) and genetic founders of the captive population (n =14) revealed 18 haplotypes in the historical population, 14 of which have not been reported previously. Only three of these haplotypes survived the genetic bottleneck, indicating > 80% reduction in haplotype richness. This substantial loss of genetic diversity is consistent with the hypothesis that condor populations were relatively abundant at the time of Euro-American contact, but declined rapidly as a result of human causes. I found no spatial sorting of haplotypes in the historical population, which suggests historical gene flow between the Pacific Northwest and southern and central California. Therefore, conservation strategies should consider restoring rangewide metapopulation connectivity when planning future reintroductions. Finally, I developed and tested activity-specific ecological niche models (nesting, roosting, and feeding) to identify areas in the Pacific Northwest that have retained ecological characteristics similar to those where condors have been observed in the last several decades. These models were integrated with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability across California, Oregon, and Washington. Ecological niche models were consistent with published knowledge of California Condor ecology, had good predictive performance when tested with data withheld from model development, and identified several candidate reintroduction areas. Results suggest that > 70% of the modeled nesting habitat and > 60% of the modeled roosting and foraging habitat in Washington, Oregon, and California is currently unoccupied. Thus, there are large unoccupied regions of the California Condor’s historical range in the Pacific Northwest that still possess relevant ecological features similar to currently occupied habitats, and therefore warrant consideration for future reintroduction efforts. In summary, this study provides foundational information to inform condor reintroductions to the Pacific Northwest. Key findings include: (1) extensive evidence that condors previously occupied the Pacific Northwest, likely in large numbers, prior to Euro-American expansion; (2) the lack of historical population structure, suggestive of historical gene flow between condor populations in the Pacific Northwest and elsewhere in the range; and, (3) identification of several candidate reintroduction areas in the Pacific Northwest that have retained environmental conditions that appear suitable for condor recovery. Close

• 5. [Article] A Real-Time PCR Assay for Early Detection of Eastern Filbert Blight

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by The American ...

  Citation × Citation Citation Abstract Copy Title: A Real-Time PCR Assay for Early Detection of Eastern Filbert Blight Author: Sathuvalli, Vidyasagar, Rossman, Amy Y., Mehlenbacher, Shawn A., Capik, John M., Zhang, Ning, Walsh, Emily, Molnar, Thomas J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by The American Phytopathological Society and can be found at: https://www.apsnet.org/publications/Pages/default.aspx. Title: A Real-Time PCR Assay for Early Detection of Eastern Filbert Blight Author: Sathuvalli, Vidyasagar, Rossman, Amy Y., Mehlenbacher, Shawn A., Capik, John M., Zhang, Ning, Walsh, Emily, Molnar, Thomas J. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The published article is copyrighted by The American Phytopathological Society and can be found at: https://www.apsnet.org/publications/Pages/default.aspx. Close