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• 1. [Article] Spatial and Temporal Variability of Contaminants Within Estuarine Sediments and Native Olympia Oysters: A Contrast Between a Developed and an Undeveloped Estuary

  Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from ...

  Citation × Citation Citation Abstract Copy Title: Spatial and Temporal Variability of Contaminants Within Estuarine Sediments and Native Olympia Oysters: A Contrast Between a Developed and an Undeveloped Estuary Author: Granek, Elise F., Conn, Katherine E., Nilsen, Elena B., Pillsbury, Lori, Strecker, Angela L., Rumrill, Steven S., Fish, William Year: 2016 Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from industrial, municipal, and urban lands, accidental spills, and atmospheric deposition. The diversity of potential sources contributes to the likelihood of contaminated marine waters and sediments and increases the probability of uptake by marine organisms. Despite widespread recognition of direct and indirect pathways for contaminant deposition and organismal exposure in coastal systems, spatial and temporal variability in contaminant composition, deposition, and uptake patterns are still poorly known. We investigated these patterns for a suite of persistent legacy contaminants including polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) and chemicals of emerging concern including pharmaceuticals within two Oregon coastal estuaries (Coos and Netarts Bays). In the more urbanized Coos Bay, native Olympia oyster (Ostrea lurida) tissue had approximately twice the number of PCB congeners at over seven times the total concentration, yet fewer PBDEs at one-tenth the concentration as compared to the more rural Netarts Bay. Different pharmaceutical suites were detected during each sampling season. Variability in contaminant types and concentrations across seasons and between species and media (organisms versus sediment) indicates the limitation of using indicator species and/or sampling annually to determine contaminant loads at a site or for specific species. The results indicate the prevalence of legacy contaminants and CECs in relatively undeveloped coastal environments highlighting the need to improve policy and management actions to reduce contaminant releases into estuarine and marine waters and to deal with legacy compounds that remain long after prohibition of use. Our results point to the need for better understanding of the ecological and human health risks of exposure to the diverse cocktail of pollutants and harmful compounds that will continue to leach from estuarine sediments over time. Title: Spatial and Temporal Variability of Contaminants Within Estuarine Sediments and Native Olympia Oysters: A Contrast Between a Developed and an Undeveloped Estuary Author: Granek, Elise F., Conn, Katherine E., Nilsen, Elena B., Pillsbury, Lori, Strecker, Angela L., Rumrill, Steven S., Fish, William Year: 2016 Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from industrial, municipal, and urban lands, accidental spills, and atmospheric deposition. The diversity of potential sources contributes to the likelihood of contaminated marine waters and sediments and increases the probability of uptake by marine organisms. Despite widespread recognition of direct and indirect pathways for contaminant deposition and organismal exposure in coastal systems, spatial and temporal variability in contaminant composition, deposition, and uptake patterns are still poorly known. We investigated these patterns for a suite of persistent legacy contaminants including polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) and chemicals of emerging concern including pharmaceuticals within two Oregon coastal estuaries (Coos and Netarts Bays). In the more urbanized Coos Bay, native Olympia oyster (Ostrea lurida) tissue had approximately twice the number of PCB congeners at over seven times the total concentration, yet fewer PBDEs at one-tenth the concentration as compared to the more rural Netarts Bay. Different pharmaceutical suites were detected during each sampling season. Variability in contaminant types and concentrations across seasons and between species and media (organisms versus sediment) indicates the limitation of using indicator species and/or sampling annually to determine contaminant loads at a site or for specific species. The results indicate the prevalence of legacy contaminants and CECs in relatively undeveloped coastal environments highlighting the need to improve policy and management actions to reduce contaminant releases into estuarine and marine waters and to deal with legacy compounds that remain long after prohibition of use. Our results point to the need for better understanding of the ecological and human health risks of exposure to the diverse cocktail of pollutants and harmful compounds that will continue to leach from estuarine sediments over time. Close

• 2. [Article] Predicted Effects of Gypsy Moth Defoliation and Climate Change on Forest Carbon Dynamics in the New Jersey Pine Barrens

  Disturbance regimes within temperate forests can significantly impact carbon cycling. Additionally, projected climate change in combination with multiple, interacting disturbance effects may disrupt the ...

  Citation × Citation Citation Abstract Copy Title: Predicted Effects of Gypsy Moth Defoliation and Climate Change on Forest Carbon Dynamics in the New Jersey Pine Barrens Author: Kretchun, Alec M., Scheller, Robert M., Lucash, Melissa S., Clark, Kenneth L., Hom, John, Van Tuyl, Steve Year: 2014 Disturbance regimes within temperate forests can significantly impact carbon cycling. Additionally, projected climate change in combination with multiple, interacting disturbance effects may disrupt the capacity of forests to act as carbon sinks at large spatial and temporal scales. We used a spatially explicit forest succession and disturbance model, LANDIS-II, to model the effects of climate change, gypsy moth (Lymantria dispar L.) defoliation, and wildfire on the C dynamics of the forests of the New Jersey Pine Barrens over the next century. Climate scenarios were simulated using current climate conditions (baseline), as well as a high emissions scenario (HadCM3 A2 emissions scenario). Our results suggest that long-term changes in C cycling will be driven more by climate change than by fire or gypsy moths over the next century. We also found that simulated disturbances will affect species composition more than tree growth or C sequestration rates at the landscape level. Projected changes in tree species biomass indicate a potential increase in oaks with climate change and gypsy moth defoliation over the course of the 100-year simulation, exacerbating current successional trends towards increased oak abundance. Our research suggests that defoliation under climate change may play a critical role in increasing the variability of tree growth rates and in determining landscape species composition over the next 100 years. Title: Predicted Effects of Gypsy Moth Defoliation and Climate Change on Forest Carbon Dynamics in the New Jersey Pine Barrens Author: Kretchun, Alec M., Scheller, Robert M., Lucash, Melissa S., Clark, Kenneth L., Hom, John, Van Tuyl, Steve Year: 2014 Disturbance regimes within temperate forests can significantly impact carbon cycling. Additionally, projected climate change in combination with multiple, interacting disturbance effects may disrupt the capacity of forests to act as carbon sinks at large spatial and temporal scales. We used a spatially explicit forest succession and disturbance model, LANDIS-II, to model the effects of climate change, gypsy moth (Lymantria dispar L.) defoliation, and wildfire on the C dynamics of the forests of the New Jersey Pine Barrens over the next century. Climate scenarios were simulated using current climate conditions (baseline), as well as a high emissions scenario (HadCM3 A2 emissions scenario). Our results suggest that long-term changes in C cycling will be driven more by climate change than by fire or gypsy moths over the next century. We also found that simulated disturbances will affect species composition more than tree growth or C sequestration rates at the landscape level. Projected changes in tree species biomass indicate a potential increase in oaks with climate change and gypsy moth defoliation over the course of the 100-year simulation, exacerbating current successional trends towards increased oak abundance. Our research suggests that defoliation under climate change may play a critical role in increasing the variability of tree growth rates and in determining landscape species composition over the next 100 years. Close

• 3. [Article] Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary

  In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, ...

  Citation × Citation Citation Abstract Copy Title: Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary Author: Kidd, Sarah Ann Year: 2017 In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, salinity levels). How these controls influence the success of tidal wetland restoration are only partly understood, but have important implications for wetland habitat recovery. Specifically, the extent to which the existing native and non-native seed banks in tidally reconnected wetlands interact with these controls is not clear, yet the potential success of passive restoration methods depends upon this understanding. For a 54-year chronosequence of eleven tidal wetland restoration sites in the Lower Columbia River of western Oregon, USA, it was hypothesized that native plant species and soil properties would show trends approaching reference levels within 3 to 20 years post-restoration and that lower elevation wetland areas within restored sites would exhibit a greater native species abundance and similarity to reference sites, compared with restored high elevation wetland areas. Results indicated that plant species richness, soil organic matter, bulk density, pH, and salinity conditions among the restoration sites reached reference wetland ranges within 3-6 years post-tidal reconnection. The mid-low marsh elevation zones (2.5 m) remained dominated by non-native species Phalaris arundinacea and Juncus effusus subsp. effusus. To investigate the mechanisms driving these non-native plant invasions, it was hypothesized that native and non-native wetland plant community distributions would be reflective both of their abundance in the seed bank and of their germination tolerance to wetland tidal flooding and salinity conditions. Using a factorial study design of three tidal conditions by three salinity levels, these hypotheses were tested in the greenhouse. Overall, non-native seeds were found to significantly outnumber native seeds in both seed banks. In the greenhouse, P. arundinacea and J. effusus were found to germinate more readily out of the seed bank under freshwater high-marsh flooding (1 hour a day) treatments as compared to oligohaline (3 ppt) mid-low marsh flooding (3-6 hours twice a day) treatments and to brackish salinity (10 ppt) treatments. Dominant native wetland species, Carex lyngbyei and Schoenoplectus lacustris, germination were not found to vary significantly among the treatments (p > 0.10). These results indicate that the salinity and flooding gradients within these restored marshes suppress germination of the non-native species in the low-mid marsh but not in the high marsh, where they are likely able to outcompete the native species due to their dominance in the seed bank. The implications of these results for passive tidal wetland restoration efforts are that both seed bank composition and species-specific tolerances to restored tidal flooding and salinity gradients are key mechanisms driving native and non-native plant community development and resilience. Title: Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary Author: Kidd, Sarah Ann Year: 2017 In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, salinity levels). How these controls influence the success of tidal wetland restoration are only partly understood, but have important implications for wetland habitat recovery. Specifically, the extent to which the existing native and non-native seed banks in tidally reconnected wetlands interact with these controls is not clear, yet the potential success of passive restoration methods depends upon this understanding. For a 54-year chronosequence of eleven tidal wetland restoration sites in the Lower Columbia River of western Oregon, USA, it was hypothesized that native plant species and soil properties would show trends approaching reference levels within 3 to 20 years post-restoration and that lower elevation wetland areas within restored sites would exhibit a greater native species abundance and similarity to reference sites, compared with restored high elevation wetland areas. Results indicated that plant species richness, soil organic matter, bulk density, pH, and salinity conditions among the restoration sites reached reference wetland ranges within 3-6 years post-tidal reconnection. The mid-low marsh elevation zones (2.5 m) remained dominated by non-native species Phalaris arundinacea and Juncus effusus subsp. effusus. To investigate the mechanisms driving these non-native plant invasions, it was hypothesized that native and non-native wetland plant community distributions would be reflective both of their abundance in the seed bank and of their germination tolerance to wetland tidal flooding and salinity conditions. Using a factorial study design of three tidal conditions by three salinity levels, these hypotheses were tested in the greenhouse. Overall, non-native seeds were found to significantly outnumber native seeds in both seed banks. In the greenhouse, P. arundinacea and J. effusus were found to germinate more readily out of the seed bank under freshwater high-marsh flooding (1 hour a day) treatments as compared to oligohaline (3 ppt) mid-low marsh flooding (3-6 hours twice a day) treatments and to brackish salinity (10 ppt) treatments. Dominant native wetland species, Carex lyngbyei and Schoenoplectus lacustris, germination were not found to vary significantly among the treatments (p > 0.10). These results indicate that the salinity and flooding gradients within these restored marshes suppress germination of the non-native species in the low-mid marsh but not in the high marsh, where they are likely able to outcompete the native species due to their dominance in the seed bank. The implications of these results for passive tidal wetland restoration efforts are that both seed bank composition and species-specific tolerances to restored tidal flooding and salinity gradients are key mechanisms driving native and non-native plant community development and resilience. Close

• 4. [Article] Effects of Increased Nitrogen Deposition on the Dominance of Hedera helix in the Pacific Northwest

  Increased nitrogen deposition has been shown to promote the dominance of invasive species, and nitrogen deposition rates have steadily increased in most of the Western United States in recent years due ...

  Citation × Citation Citation Abstract Copy Title: Effects of Increased Nitrogen Deposition on the Dominance of Hedera helix in the Pacific Northwest Author: Dolan, Bianca Christine Year: 2013 Increased nitrogen deposition has been shown to promote the dominance of invasive species, and nitrogen deposition rates have steadily increased in most of the Western United States in recent years due to population increases. The purpose of this study was to determine if increased rates of nitrogen deposition are contributing to the success of Hedera helix in the Pacific Northwest. Plots were established in Lesser Park in Portland, Oregon and received monthly treatments of ammonium nitrate for one year. Growth, measured as change in percent cover, was compared between treated and untreated plots for both H. helix and native species. Additionally, a greenhouse experiment was employed wherein H. helix was grown in shared pots with two native species, Fragaria vesca and Polystichum munitum, and three treatment levels were compared; none, low, and high nitrogen. Relative growth rate was compared between treatments for each species after twelve weeks of treatment. Results from the greenhouse experiment were highly variable and no general conclusions could be drawn about the effects of increased nitrogen deposition on competition between H. helix and native species. In the field, treatment did not have a significant effect on growth but species did have a significant effect, as H. helix had a greater increase in percent cover than native species regardless of treatment. However, a marginally significant interaction was found between species and treatment. Native species cover actually increased in plots that received nitrogen addition and decreased in control plots, while H. helix had a slightly higher increase in cover in control plots. Though the growth of H. helix was significantly higher than the growth of native species in control plots, nitrogen addition caused the growth rates to converge towards more similar means in treated plots. Results indicate that increased nitrogen deposition may actually have a positive effect on the growth of native species by reducing the invasive potential of H. helix. Title: Effects of Increased Nitrogen Deposition on the Dominance of Hedera helix in the Pacific Northwest Author: Dolan, Bianca Christine Year: 2013 Increased nitrogen deposition has been shown to promote the dominance of invasive species, and nitrogen deposition rates have steadily increased in most of the Western United States in recent years due to population increases. The purpose of this study was to determine if increased rates of nitrogen deposition are contributing to the success of Hedera helix in the Pacific Northwest. Plots were established in Lesser Park in Portland, Oregon and received monthly treatments of ammonium nitrate for one year. Growth, measured as change in percent cover, was compared between treated and untreated plots for both H. helix and native species. Additionally, a greenhouse experiment was employed wherein H. helix was grown in shared pots with two native species, Fragaria vesca and Polystichum munitum, and three treatment levels were compared; none, low, and high nitrogen. Relative growth rate was compared between treatments for each species after twelve weeks of treatment. Results from the greenhouse experiment were highly variable and no general conclusions could be drawn about the effects of increased nitrogen deposition on competition between H. helix and native species. In the field, treatment did not have a significant effect on growth but species did have a significant effect, as H. helix had a greater increase in percent cover than native species regardless of treatment. However, a marginally significant interaction was found between species and treatment. Native species cover actually increased in plots that received nitrogen addition and decreased in control plots, while H. helix had a slightly higher increase in cover in control plots. Though the growth of H. helix was significantly higher than the growth of native species in control plots, nitrogen addition caused the growth rates to converge towards more similar means in treated plots. Results indicate that increased nitrogen deposition may actually have a positive effect on the growth of native species by reducing the invasive potential of H. helix. Close

• 5. [Article] The Effectiveness of Vertebrate Passage and Prevention Structures: A Study of Boeckman Road in Wilsonville

  One of the most obvious impacts roads have on the natural world is direct mortality to individual animals that attempt to cross roads. A less obvious but likely more important impact of roads on many species ...

  Citation × Citation Citation Abstract Copy Title: The Effectiveness of Vertebrate Passage and Prevention Structures: A Study of Boeckman Road in Wilsonville Author: de Rivera, Catherine E., Bliss-Ketchum, Leslie L. Year: 2010 One of the most obvious impacts roads have on the natural world is direct mortality to individual animals that attempt to cross roads. A less obvious but likely more important impact of roads on many species is habitat fragmentation. The ability for individuals to travel between subpopulations is the key to genetic diversity as well as ultimately the survival of the species. Considering these impacts and management goals to increase habitat connectivity, increased attention has been given to creating road design that reduces wildlife collisions. Most studies, however, have been in other countries or regions and most focus on connectivity for just one or a few species and rarely in urban settings. This study examines the effectiveness of a variety of under-road passage structures for a community of animals in an urban wetland. Wildlife passage was taken into great consideration in the construction of the Boeckman Road Extension, the new road (2006) in Wilsonville, Oregon, examined in this study. As a result it includes a bridge, two box culverts and eleven round concrete culverts to facilitate wildlife passage as well as a mammal fence atop an amphibian/reptile wall. In order to monitor passage use we used a combination of sand-track monitoring and motion-detect cameras. We compared passage structure use to movement in the habitats surrounding the road by monitoring four habitat transects in addition to the passage structures (Road transect). We also conducted tag and release studies targeted to small mammals. Finally, camera data collected in passage structures were compared to camera monitoring at the end of the exclusionary fencing. A total of 26 species were detected in this study, 73% (19) of which were found to be using passage structures. 15% (4) of the identified species were detected on transects but not in passages and 11.5% (3) were detected in locations other than transects or passage structures. The bridge structure provided passage to the highest number of species (16), followed by the 24” and 18” culverts, which had a combined total of 11 species, and lastly the 9x4 culverts, which were flooded, with 2 species detected. Our results indicate that large and medium mammals overall did not use passages less than would be expected based on their local movement in habitats. In pit and Sherman traps sixteen of the 48 small mammals that were captured and tagged were re-caught, but only four of these moved from one transect to another, with two moving away from the road and the other two moving toward and under the road. Of the species detected with cameras at the passage structures and circumventing fencing, excluding small mammals, reptiles and amphibians (139), 19% (33) were found potentially crossing on the road surface. The proportion of deer detected using over-road crossings (23%) is of particular concern for driver safety. The bridge structure provided the greatest passage, in not only frequency of crossings but also species present. When maintenance factors, driver safety and species of greatest concern are included, the higher cost of the bridge structure would likely be even further balanced by the benefits. This study highlights the effectiveness and potential problems (and possible fixes) of some of the passage and prevention structures. Including passage and prevention structures such as these in road design is imperative for habitat connectivity and the need for this becomes even more apparent as Oregon’s native wildlife face an ever increasing urban landscape as well as the potential impacts of climate change. Title: The Effectiveness of Vertebrate Passage and Prevention Structures: A Study of Boeckman Road in Wilsonville Author: de Rivera, Catherine E., Bliss-Ketchum, Leslie L. Year: 2010 One of the most obvious impacts roads have on the natural world is direct mortality to individual animals that attempt to cross roads. A less obvious but likely more important impact of roads on many species is habitat fragmentation. The ability for individuals to travel between subpopulations is the key to genetic diversity as well as ultimately the survival of the species. Considering these impacts and management goals to increase habitat connectivity, increased attention has been given to creating road design that reduces wildlife collisions. Most studies, however, have been in other countries or regions and most focus on connectivity for just one or a few species and rarely in urban settings. This study examines the effectiveness of a variety of under-road passage structures for a community of animals in an urban wetland. Wildlife passage was taken into great consideration in the construction of the Boeckman Road Extension, the new road (2006) in Wilsonville, Oregon, examined in this study. As a result it includes a bridge, two box culverts and eleven round concrete culverts to facilitate wildlife passage as well as a mammal fence atop an amphibian/reptile wall. In order to monitor passage use we used a combination of sand-track monitoring and motion-detect cameras. We compared passage structure use to movement in the habitats surrounding the road by monitoring four habitat transects in addition to the passage structures (Road transect). We also conducted tag and release studies targeted to small mammals. Finally, camera data collected in passage structures were compared to camera monitoring at the end of the exclusionary fencing. A total of 26 species were detected in this study, 73% (19) of which were found to be using passage structures. 15% (4) of the identified species were detected on transects but not in passages and 11.5% (3) were detected in locations other than transects or passage structures. The bridge structure provided passage to the highest number of species (16), followed by the 24” and 18” culverts, which had a combined total of 11 species, and lastly the 9x4 culverts, which were flooded, with 2 species detected. Our results indicate that large and medium mammals overall did not use passages less than would be expected based on their local movement in habitats. In pit and Sherman traps sixteen of the 48 small mammals that were captured and tagged were re-caught, but only four of these moved from one transect to another, with two moving away from the road and the other two moving toward and under the road. Of the species detected with cameras at the passage structures and circumventing fencing, excluding small mammals, reptiles and amphibians (139), 19% (33) were found potentially crossing on the road surface. The proportion of deer detected using over-road crossings (23%) is of particular concern for driver safety. The bridge structure provided the greatest passage, in not only frequency of crossings but also species present. When maintenance factors, driver safety and species of greatest concern are included, the higher cost of the bridge structure would likely be even further balanced by the benefits. This study highlights the effectiveness and potential problems (and possible fixes) of some of the passage and prevention structures. Including passage and prevention structures such as these in road design is imperative for habitat connectivity and the need for this becomes even more apparent as Oregon’s native wildlife face an ever increasing urban landscape as well as the potential impacts of climate change. Close

• 6. [Article] Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality

  Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native ...

  Citation × Citation Citation Abstract Copy Title: Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality Author: Turner, Brian Christopher Year: 2017 Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. However, the impacts of predator and human induced mortality may be mitigated by the behavior or population-level responses of a given non-native species. My dissertation examined the responses of non-native aquatic species to the risk of predation by novel (i.e., no previous exposure) predators in the recipient community and indicators of potential compensatory responses by non-native populations to increased mortality resulting from removal efforts. My dissertation addresses four primary questions. 1) Can first generation, naïve invaders recognize and defend against predators found within the region of invasion through the expression of inducible defenses? 2) Can the overcompensatory potential of a population be predicted though examinations of intraspecific interactions of individuals from the population? 3) What is the relationship between removal effort outcome (i.e., successful or unsuccessful reduction of the target population) and compensatory population responses? 4) Is there a relationship between characteristics of removal efforts that are typically available to managers (e.g., target area size, target area connectivity, removal methodology) and compensatory population responses that could indicate the relative likelihood of compensation resulting from removal efforts? An invading species should be more likely to establish if it can successfully identify and defend against predators in the recipient range, such as through the expression of inducible defenses. Inducible defenses are behavioral or physiological changes that reduce an organism's susceptibility to predation. Through a series of laboratory experiments, I tested whether inducible defenses, in the form of increased burrowing depth, may have benefited the early stage of invasion of Nuttallia obscurata (purple varnish clam), an established Northeast Pacific invader. Specimens of N. obscurata were collected from introduced populations in the Northeast Pacific and from a native population in Japan. The clams were exposed to chemical and physical cues from Northeast Pacific crab predators, including the native Metacarcinus magister (Dungeness crab), an abundant and frequent predator of N. obscurata. While introduced N. obscurata increased their burrowing depth in the physical presence of M. magister, clams collected from their native range showed no such response. This lack of increased burrowing depth by naïve clams in response to a predator native to the newly invaded range, but a significant increase in depth for clams from populations established in the range suggests that while inducible defenses likely did not contribute to the initial establishment of N. obscurata in the Northeast Pacific, they may contribute to their continued persistence and expansion in their introduced range. Some efforts to reduce invasive populations have paradoxically led to population increases. This phenomenon, referred to as overcompensation, occurs when strong negative density-dependent interactions are reduced through increased mortality within a population, resulting in an increase in the population's recruitment rate sufficient to increase the population's overall abundance. Increases in a population's recruitment rate can result from reduced cannibalism of juveniles resulting in lower mortality of new recruits, from increased adult reproductive output, which increases the number of potential recruits, or from reductions in size and/or age at maturity of the unharvested population, which increases the number of reproductive individuals. I predicted the overcompensatory potential of a population of Carcinus maenas (European green crab) in Bodega Harbor, California, using a series of laboratory and field experiments examining intraspecific pressures of adults on juveniles in the population. This measure of intraspecific pressure was used to predict the overcompensatory potential of the population in response to increased mortality from ongoing removal efforts. This prediction was then assessed using pre- and post-removal surveys of juvenile recruitment in Bodega Harbor compared to nearby populations, testing for evidence of overcompensation. While adult C. maenas in Bodega Harbor had limited negative impacts on juveniles, I concluded it was unlikely to result in overcompensation. Relative juvenile abundance did not statistically increase in removal compared to reference populations, consistent with my conclusion from the experiments. Increases in recruitment rates can occur as a result of efforts to remove non-native species. This increase in recruitment can result in overcompensation, but more commonly results in compensation, where recruitment rates increase relative to pre-removal recruitment but does not result in in the population's abundance exceeding pre-removal levels. However, a detailed and accurate prediction of the response of a population to harvest is time consuming and data intensive. This is not feasible for most efforts to eradicate non-native species, which have the greatest chance of success when enacted rapidly after detection. For my final chapter, I performed a literature review and accompanying statistical analysis to determine if typically available information related to the removal effort (site size, site connectivity, and removal technique) could be used to determine increased risk of compensation for a given effort to remove aquatic invasive species. Compensation was closely linked to unsuccessful removal efforts and was observed only among efforts utilizing physical removal methods. However, the frequency with which compensation occurred varied with the exact technique employed, occurring most frequently in removal utilizing electrofishing. Additionally, evidence of compensation was more frequent among larger removal areas with variable connectivity. While other predictors (temperature, effort, etc) might add to the predicative power, the findings of the review provide criteria for managers to determine the relative risk of compensation prior to the start of removal. Further understanding of how invasive species respond to lethal biotic interactions, including anthropogenically mediated control measures, can aid in assessing the risk of invasion for a given species and inform managers of the risk of complications resulting from removal efforts. While inducible defenses may contribute to the long-term success of an introduced species in their recipient range, my findings did not support the idea that inducible defenses triggered by predator cues contributed to their initial introduction in this case. However, research on other non-native species and offspring of previously naïve prey would allow for a clearer picture of the role of inducible defenses in the invasion process. Compensation resulting from removal efforts does not guarantee failure, and certain characteristics of removal efforts seem to indicate increased risk of compensation. Together these components help identify how biotic interactions surrounding mortality risk of an invading species help shape the trajectory of invasion. Title: Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality Author: Turner, Brian Christopher Year: 2017 Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. However, the impacts of predator and human induced mortality may be mitigated by the behavior or population-level responses of a given non-native species. My dissertation examined the responses of non-native aquatic species to the risk of predation by novel (i.e., no previous exposure) predators in the recipient community and indicators of potential compensatory responses by non-native populations to increased mortality resulting from removal efforts. My dissertation addresses four primary questions. 1) Can first generation, naïve invaders recognize and defend against predators found within the region of invasion through the expression of inducible defenses? 2) Can the overcompensatory potential of a population be predicted though examinations of intraspecific interactions of individuals from the population? 3) What is the relationship between removal effort outcome (i.e., successful or unsuccessful reduction of the target population) and compensatory population responses? 4) Is there a relationship between characteristics of removal efforts that are typically available to managers (e.g., target area size, target area connectivity, removal methodology) and compensatory population responses that could indicate the relative likelihood of compensation resulting from removal efforts? An invading species should be more likely to establish if it can successfully identify and defend against predators in the recipient range, such as through the expression of inducible defenses. Inducible defenses are behavioral or physiological changes that reduce an organism's susceptibility to predation. Through a series of laboratory experiments, I tested whether inducible defenses, in the form of increased burrowing depth, may have benefited the early stage of invasion of Nuttallia obscurata (purple varnish clam), an established Northeast Pacific invader. Specimens of N. obscurata were collected from introduced populations in the Northeast Pacific and from a native population in Japan. The clams were exposed to chemical and physical cues from Northeast Pacific crab predators, including the native Metacarcinus magister (Dungeness crab), an abundant and frequent predator of N. obscurata. While introduced N. obscurata increased their burrowing depth in the physical presence of M. magister, clams collected from their native range showed no such response. This lack of increased burrowing depth by naïve clams in response to a predator native to the newly invaded range, but a significant increase in depth for clams from populations established in the range suggests that while inducible defenses likely did not contribute to the initial establishment of N. obscurata in the Northeast Pacific, they may contribute to their continued persistence and expansion in their introduced range. Some efforts to reduce invasive populations have paradoxically led to population increases. This phenomenon, referred to as overcompensation, occurs when strong negative density-dependent interactions are reduced through increased mortality within a population, resulting in an increase in the population's recruitment rate sufficient to increase the population's overall abundance. Increases in a population's recruitment rate can result from reduced cannibalism of juveniles resulting in lower mortality of new recruits, from increased adult reproductive output, which increases the number of potential recruits, or from reductions in size and/or age at maturity of the unharvested population, which increases the number of reproductive individuals. I predicted the overcompensatory potential of a population of Carcinus maenas (European green crab) in Bodega Harbor, California, using a series of laboratory and field experiments examining intraspecific pressures of adults on juveniles in the population. This measure of intraspecific pressure was used to predict the overcompensatory potential of the population in response to increased mortality from ongoing removal efforts. This prediction was then assessed using pre- and post-removal surveys of juvenile recruitment in Bodega Harbor compared to nearby populations, testing for evidence of overcompensation. While adult C. maenas in Bodega Harbor had limited negative impacts on juveniles, I concluded it was unlikely to result in overcompensation. Relative juvenile abundance did not statistically increase in removal compared to reference populations, consistent with my conclusion from the experiments. Increases in recruitment rates can occur as a result of efforts to remove non-native species. This increase in recruitment can result in overcompensation, but more commonly results in compensation, where recruitment rates increase relative to pre-removal recruitment but does not result in in the population's abundance exceeding pre-removal levels. However, a detailed and accurate prediction of the response of a population to harvest is time consuming and data intensive. This is not feasible for most efforts to eradicate non-native species, which have the greatest chance of success when enacted rapidly after detection. For my final chapter, I performed a literature review and accompanying statistical analysis to determine if typically available information related to the removal effort (site size, site connectivity, and removal technique) could be used to determine increased risk of compensation for a given effort to remove aquatic invasive species. Compensation was closely linked to unsuccessful removal efforts and was observed only among efforts utilizing physical removal methods. However, the frequency with which compensation occurred varied with the exact technique employed, occurring most frequently in removal utilizing electrofishing. Additionally, evidence of compensation was more frequent among larger removal areas with variable connectivity. While other predictors (temperature, effort, etc) might add to the predicative power, the findings of the review provide criteria for managers to determine the relative risk of compensation prior to the start of removal. Further understanding of how invasive species respond to lethal biotic interactions, including anthropogenically mediated control measures, can aid in assessing the risk of invasion for a given species and inform managers of the risk of complications resulting from removal efforts. While inducible defenses may contribute to the long-term success of an introduced species in their recipient range, my findings did not support the idea that inducible defenses triggered by predator cues contributed to their initial introduction in this case. However, research on other non-native species and offspring of previously naïve prey would allow for a clearer picture of the role of inducible defenses in the invasion process. Compensation resulting from removal efforts does not guarantee failure, and certain characteristics of removal efforts seem to indicate increased risk of compensation. Together these components help identify how biotic interactions surrounding mortality risk of an invading species help shape the trajectory of invasion. Close

• 7. [Article] Biodiversity: Connecting with the Tapestry of Life

  Biodiversity is the extraordinary variety of life on Earth – from genes and species to ecosystems and the valuable functions they perform. E.O. Wilson, the noted biologist and author who coined the term ...

  Citation × Citation Citation Abstract Copy Title: Biodiversity: Connecting with the Tapestry of Life Author: Granek, Elise F., Dallmeier, Francisco, Alonso, Alfonso, Raven, Peter H. Year: 2001 Biodiversity is the extraordinary variety of life on Earth – from genes and species to ecosystems and the valuable functions they perform. E.O. Wilson, the noted biologist and author who coined the term “biodiversity,” explains it as “the very stuff of life.” Species and the ecosystems in which they live are indelibly linked. Conversion or loss of ecosystems inevitably impairs the species that depend on them. As well, changes in the life cycle of one species could impact the life cycles of many other species (including humans), alter ecosystems and ecosystem functions, and contribute to local, regional and, ultimately, global changes. Life as we know it will not be the same if our rich biodiversity heritage is dramatically altered. And the signs indicate that this is precisely what is happening. Biodiversity is threatened, and not because of catastrophic events such as the asteroid crash that scientists believe caused the extinction of the dinosaurs. The current threat to biodiversity, and thus to the tapestry of life, stems primarily from expanding human populations and increased human consumption of natural resources. Fortunately, together we can take steps to protect our rich biodiversity. The Smithsonian Institution’s Program on Monitoring and Assessment of Biodiversity, under the Conservation and Research Center of the National Zoological Park, and the President’s Committee of Advisors on Science and Technology worked together to prepare this booklet. It explains what biodiversity is, why it is so important, why it is threatened, and what can be done to conserve this valuable resource. Read on to learn more about what we can all do to help. Title: Biodiversity: Connecting with the Tapestry of Life Author: Granek, Elise F., Dallmeier, Francisco, Alonso, Alfonso, Raven, Peter H. Year: 2001 Biodiversity is the extraordinary variety of life on Earth – from genes and species to ecosystems and the valuable functions they perform. E.O. Wilson, the noted biologist and author who coined the term “biodiversity,” explains it as “the very stuff of life.” Species and the ecosystems in which they live are indelibly linked. Conversion or loss of ecosystems inevitably impairs the species that depend on them. As well, changes in the life cycle of one species could impact the life cycles of many other species (including humans), alter ecosystems and ecosystem functions, and contribute to local, regional and, ultimately, global changes. Life as we know it will not be the same if our rich biodiversity heritage is dramatically altered. And the signs indicate that this is precisely what is happening. Biodiversity is threatened, and not because of catastrophic events such as the asteroid crash that scientists believe caused the extinction of the dinosaurs. The current threat to biodiversity, and thus to the tapestry of life, stems primarily from expanding human populations and increased human consumption of natural resources. Fortunately, together we can take steps to protect our rich biodiversity. The Smithsonian Institution’s Program on Monitoring and Assessment of Biodiversity, under the Conservation and Research Center of the National Zoological Park, and the President’s Committee of Advisors on Science and Technology worked together to prepare this booklet. It explains what biodiversity is, why it is so important, why it is threatened, and what can be done to conserve this valuable resource. Read on to learn more about what we can all do to help. Close

• 8. [Article] Carbon Sequestration in Managed Temperate Coniferous Forests Under Climate Change

  Management of temperate forests has the potential to increase carbon sinks and mitigate climate change. However, those opportunities may be confounded by negative climate change impacts. We therefore need ...

  Citation × Citation Citation Abstract Copy Title: Carbon Sequestration in Managed Temperate Coniferous Forests Under Climate Change Author: Dymond, Caren C., Beukema, Sarah, Nitschke, Craig R., Coates, K. David, Scheller, Robert M. Year: 2016 Management of temperate forests has the potential to increase carbon sinks and mitigate climate change. However, those opportunities may be confounded by negative climate change impacts. We therefore need a better understanding of climate change alterations to temperate forest carbon dynamics before developing mitigation strategies. The purpose of this project was to investigate the interactions of species composition, fire, management, and climate change in the Copper–Pine Creek valley, a temperate coniferous forest with a wide range of growing conditions. To do so, we used the LANDIS-II modelling framework including the new Forest Carbon Succession extension to simulate forest ecosystems under four different productivity scenarios, with and without climate change effects, until 2050. Significantly, the new extension allowed us to calculate the net sector productivity, a carbon accounting metric that integrates aboveground and belowground carbon dynamics, disturbances, and the eventual fate of forest products. The model output was validated against literature values. The results implied that the species optimum growing conditions relative to current and future conditions strongly influenced future carbon dynamics. Warmer growing conditions led to increased carbon sinks and storage in the colder and wetter ecoregions but not necessarily in the others. Climate change impacts varied among species and site conditions, and this indicates that both of these components need to be taken into account when considering climate change mitigation activities and adaptive management. The introduction of a new carbon indicator, net sector productivity, promises to be useful in assessing management effectiveness and mitigation activities. Title: Carbon Sequestration in Managed Temperate Coniferous Forests Under Climate Change Author: Dymond, Caren C., Beukema, Sarah, Nitschke, Craig R., Coates, K. David, Scheller, Robert M. Year: 2016 Management of temperate forests has the potential to increase carbon sinks and mitigate climate change. However, those opportunities may be confounded by negative climate change impacts. We therefore need a better understanding of climate change alterations to temperate forest carbon dynamics before developing mitigation strategies. The purpose of this project was to investigate the interactions of species composition, fire, management, and climate change in the Copper–Pine Creek valley, a temperate coniferous forest with a wide range of growing conditions. To do so, we used the LANDIS-II modelling framework including the new Forest Carbon Succession extension to simulate forest ecosystems under four different productivity scenarios, with and without climate change effects, until 2050. Significantly, the new extension allowed us to calculate the net sector productivity, a carbon accounting metric that integrates aboveground and belowground carbon dynamics, disturbances, and the eventual fate of forest products. The model output was validated against literature values. The results implied that the species optimum growing conditions relative to current and future conditions strongly influenced future carbon dynamics. Warmer growing conditions led to increased carbon sinks and storage in the colder and wetter ecoregions but not necessarily in the others. Climate change impacts varied among species and site conditions, and this indicates that both of these components need to be taken into account when considering climate change mitigation activities and adaptive management. The introduction of a new carbon indicator, net sector productivity, promises to be useful in assessing management effectiveness and mitigation activities. Close

• 9. [Article] An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs

  Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized ...

  Citation × Citation Citation Abstract Copy Title: An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs Author: Cimino, Samuel Anthony Year: 2016 Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized as a series of stages (Transport, Introduction, Establishment, and Spread), which encourages ecologists to isolate factors that might enable a species to pass from one stage to another and therefore guide prevention or impact management. This thesis addresses each stage of invasion and attempts to determine where management might succeed in preventing invasion or minimizing impacts. The transport and introduction of aquatic invasive species (AIS) was analyzed by conducting a three tier human subjects survey at Tenmile Lake, Oregon over a two year period in which a public boat wash station was built and installed. Assessing boater knowledge of AIS and understanding proper boat cleaning procedure is useful in determining the threat of transport and introduction as overland boater movements is a major vector of AIS. The comparison between pre- and post- boat wash surveys indicate that there is a disconnect between what boaters say they will do and how they actually behave. While 75.9% of boaters from the pre-survey claimed they would use a boat wash station at Tenmile Lake, only 38.5% of post-survey boaters were observed using the station. Furthermore, the surveys identified knowledge gaps of boaters' awareness of AIS. More than 20.0% of boaters surveyed could not verbally name any AIS. To better understand the establishment and spread stages of invasion, I examined the influence of a specific AIS, the New Zealand mud snail (Potamopyrgus antipodarum; NZMS), on benthic food webs throughout three very different aquatic ecosystems (lakes, rivers, and estuaries). Samples of benthic lake, river, and estuarine invertebrates were collected, identified, and counted, and stable isotope analyses (SIA) were conducted on several components of the food web. NZMS densities were found to be dynamic, with population densities fluctuating over time and between locations. A significant negative relationship between NZMS density and community diversity across all ecosystems was found. However, the densities of specific feeding groups had varying positive (omnivores) and negative (herbivores) correlations with NZMS densities. Furthermore, SIA indicated that NZMS don't appear to be competing with native macroinvertebrates for the same food source. NZMS were found to have different influences on each invaded ecosystem, thus management of this particular AIS is difficult once established and spreading. The results of this thesis suggest that prevention of the transport and introduction of NZMS needs to be the focus for future management. Preventative management should include public outreach regarding AIS and proper boat cleaning procedure, and management should also emphasize the need for regional policies and regulations on the transport of AIS rather than site or state specific policies and regulations. Title: An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs Author: Cimino, Samuel Anthony Year: 2016 Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized as a series of stages (Transport, Introduction, Establishment, and Spread), which encourages ecologists to isolate factors that might enable a species to pass from one stage to another and therefore guide prevention or impact management. This thesis addresses each stage of invasion and attempts to determine where management might succeed in preventing invasion or minimizing impacts. The transport and introduction of aquatic invasive species (AIS) was analyzed by conducting a three tier human subjects survey at Tenmile Lake, Oregon over a two year period in which a public boat wash station was built and installed. Assessing boater knowledge of AIS and understanding proper boat cleaning procedure is useful in determining the threat of transport and introduction as overland boater movements is a major vector of AIS. The comparison between pre- and post- boat wash surveys indicate that there is a disconnect between what boaters say they will do and how they actually behave. While 75.9% of boaters from the pre-survey claimed they would use a boat wash station at Tenmile Lake, only 38.5% of post-survey boaters were observed using the station. Furthermore, the surveys identified knowledge gaps of boaters' awareness of AIS. More than 20.0% of boaters surveyed could not verbally name any AIS. To better understand the establishment and spread stages of invasion, I examined the influence of a specific AIS, the New Zealand mud snail (Potamopyrgus antipodarum; NZMS), on benthic food webs throughout three very different aquatic ecosystems (lakes, rivers, and estuaries). Samples of benthic lake, river, and estuarine invertebrates were collected, identified, and counted, and stable isotope analyses (SIA) were conducted on several components of the food web. NZMS densities were found to be dynamic, with population densities fluctuating over time and between locations. A significant negative relationship between NZMS density and community diversity across all ecosystems was found. However, the densities of specific feeding groups had varying positive (omnivores) and negative (herbivores) correlations with NZMS densities. Furthermore, SIA indicated that NZMS don't appear to be competing with native macroinvertebrates for the same food source. NZMS were found to have different influences on each invaded ecosystem, thus management of this particular AIS is difficult once established and spreading. The results of this thesis suggest that prevention of the transport and introduction of NZMS needs to be the focus for future management. Preventative management should include public outreach regarding AIS and proper boat cleaning procedure, and management should also emphasize the need for regional policies and regulations on the transport of AIS rather than site or state specific policies and regulations. Close

• 10. [Article] The McKee Preserve Management Options at Bandon Dunes Golf Resort

  The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. ...

  Citation × Citation Citation Abstract Copy Title: The McKee Preserve Management Options at Bandon Dunes Golf Resort Author: Edwards, Ashley Marie Year: 2009 The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. One important resource is silvery phacelia (Phacelia argentea), which is a state threatened plant species and is a species of concern federally. The goal of this project was to perform plant inventories for silvery phacelia and kinnikinnick that will be used to establish a functional management plan for the Preserve. Other resources of interest to the Preserve have been included in the literature review and management plan. A proposed par 3 golf course has also been included in the analysis and management plan of the report. Using Geographical Information Systems and Global Positioning Systems to conduct the silvery phacelia inventory showed that there are 6,803 individual plants at the Resort and 5,078 plants on the Preserve. A silvery phacelia community was found north of Cut Creek, which has not been listed as a historical site for this species. The species most likely established itself through fill materials that were seed rich, when building the second golf course on the property, Pacific Dunes. The kinnikinnick meadows have been reduced from building and opening Bandon Trails Golf Course. The remaining meadows are 1.4 acres in size. The par 3 golf course, if built, will be located in the northern portion of the Preserve and would share access with Bandon Trails Golf Course. Out of the 11 proposed holes, 9 have been approved so that impacts to the silvery phacelia will be minimized. Title: The McKee Preserve Management Options at Bandon Dunes Golf Resort Author: Edwards, Ashley Marie Year: 2009 The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. One important resource is silvery phacelia (Phacelia argentea), which is a state threatened plant species and is a species of concern federally. The goal of this project was to perform plant inventories for silvery phacelia and kinnikinnick that will be used to establish a functional management plan for the Preserve. Other resources of interest to the Preserve have been included in the literature review and management plan. A proposed par 3 golf course has also been included in the analysis and management plan of the report. Using Geographical Information Systems and Global Positioning Systems to conduct the silvery phacelia inventory showed that there are 6,803 individual plants at the Resort and 5,078 plants on the Preserve. A silvery phacelia community was found north of Cut Creek, which has not been listed as a historical site for this species. The species most likely established itself through fill materials that were seed rich, when building the second golf course on the property, Pacific Dunes. The kinnikinnick meadows have been reduced from building and opening Bandon Trails Golf Course. The remaining meadows are 1.4 acres in size. The par 3 golf course, if built, will be located in the northern portion of the Preserve and would share access with Bandon Trails Golf Course. Out of the 11 proposed holes, 9 have been approved so that impacts to the silvery phacelia will be minimized. Close