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• 1. [Article] Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters

  Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. ...

  Citation × Citation Citation Abstract Copy Title: Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters Author: Strecker, Angela L., Olden, Julian D. Year: 2014 Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. Title: Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters Author: Strecker, Angela L., Olden, Julian D. Year: 2014 Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. Close

• 2. [Article] An analysis of Pteropus livingstonii roost habitat: Indicators for forest conservation on Anjouan and Moheli

  Livingstone's fruit bat (Pteropus livingstonii) is an endangered and endemic species found only on the islands of Anjouan and Mohéli, Comoros. A study was conducted into the habitats selected by P. livingstonii, ...

  Citation × Citation Citation Abstract Copy Title: An analysis of Pteropus livingstonii roost habitat: Indicators for forest conservation on Anjouan and Moheli Author: Granek, Elise F. Year: 2000 Livingstone's fruit bat (Pteropus livingstonii) is an endangered and endemic species found only on the islands of Anjouan and Mohéli, Comoros. A study was conducted into the habitats selected by P. livingstonii, as part of a project to assess areas for nature reserves which will be able to protect and conserve forest resources in the islands; the bat is postulated to be a useful indicator of undisturbed forest. Known roost sites (n=9) before the survey were between 500 and 1100 m altitude, on steeply sloping land, with some indigenous forest cover present. Thirteen new potential roost sites were identified, of which at least six were confirmed as roost sites for P. livingstonii. Bats showed positive associations with two tree species: Gambeya sp. and Nuxia pseudodentata. The study also investigated the participation by local village communities in monitoring bat populations, and the protection of roost sites. Title: An analysis of Pteropus livingstonii roost habitat: Indicators for forest conservation on Anjouan and Moheli Author: Granek, Elise F. Year: 2000 Livingstone's fruit bat (Pteropus livingstonii) is an endangered and endemic species found only on the islands of Anjouan and Mohéli, Comoros. A study was conducted into the habitats selected by P. livingstonii, as part of a project to assess areas for nature reserves which will be able to protect and conserve forest resources in the islands; the bat is postulated to be a useful indicator of undisturbed forest. Known roost sites (n=9) before the survey were between 500 and 1100 m altitude, on steeply sloping land, with some indigenous forest cover present. Thirteen new potential roost sites were identified, of which at least six were confirmed as roost sites for P. livingstonii. Bats showed positive associations with two tree species: Gambeya sp. and Nuxia pseudodentata. The study also investigated the participation by local village communities in monitoring bat populations, and the protection of roost sites. Close

• 3. [Article] Survey of Aquatic Plants in Corps of Engineers Reservoirs

  A survey of aquatic plants in a selected Corps of Engineers reservoirs in Oregon was conducted. Cottage Grove, Dorena, Fern Ridge, Dexter and Willow Creek Reservoirs contained abundant aquatic plants. ...

  Citation × Citation Citation Abstract Copy Title: Survey of Aquatic Plants in Corps of Engineers Reservoirs Author: Walker, Kimberly D., Sytsma, Mark D. Year: 2000 A survey of aquatic plants in a selected Corps of Engineers reservoirs in Oregon was conducted. Cottage Grove, Dorena, Fern Ridge, Dexter and Willow Creek Reservoirs contained abundant aquatic plants. Potamogeton pectinatus and Potamogeton epihydrous were the most common native plant species. Myriophyllum aquaticum and Potamogeton crispus were the most widespread nonnative plants. Species richness in the reservoirs was correlated with trophic status and basin morphology. Shallow reservoirs that included extensive areas of nutrient-rich sediments that were historic flood plain soils supported the greatest biomass and number of species. Mesotrophic reservoirs had lower species diversity. Oligotrophic reservoirs with steep basin morphology, nutrient-poor sediments, and large water level fluctuation did not support aquatic vascular plant populations. An aquatic plant management program should be developed for the reservoirs. The program should focus on preventing introduction and spread of invasive aquatic plants and on rapid response procedures for new infestations. Those reservoirs that currently support aquatic macrophyte communities may be most susceptible to invasion and rapid spread of new introductions, however, even reservoirs that are currently free of aquatic plants may be invaded. Early detection is critical to effective implementation of rapid response procedures for invasive aquatic plant control. Annual survey of the most productive reservoirs is recommended to document introduction of new species. Plant community composition changes during the growing season, and multiple surveys during the growing season are preferred over one-time visits. Management of established populations of invasive species in the reservoirs will be difficult. Where invasive plant abundance is limited in area and number management activities may be implemented to slow dispersal and perhaps eradicate the plants. Integrated pest management procedures should be followed to ensure effective and economical aquatic plant control. Title: Survey of Aquatic Plants in Corps of Engineers Reservoirs Author: Walker, Kimberly D., Sytsma, Mark D. Year: 2000 A survey of aquatic plants in a selected Corps of Engineers reservoirs in Oregon was conducted. Cottage Grove, Dorena, Fern Ridge, Dexter and Willow Creek Reservoirs contained abundant aquatic plants. Potamogeton pectinatus and Potamogeton epihydrous were the most common native plant species. Myriophyllum aquaticum and Potamogeton crispus were the most widespread nonnative plants. Species richness in the reservoirs was correlated with trophic status and basin morphology. Shallow reservoirs that included extensive areas of nutrient-rich sediments that were historic flood plain soils supported the greatest biomass and number of species. Mesotrophic reservoirs had lower species diversity. Oligotrophic reservoirs with steep basin morphology, nutrient-poor sediments, and large water level fluctuation did not support aquatic vascular plant populations. An aquatic plant management program should be developed for the reservoirs. The program should focus on preventing introduction and spread of invasive aquatic plants and on rapid response procedures for new infestations. Those reservoirs that currently support aquatic macrophyte communities may be most susceptible to invasion and rapid spread of new introductions, however, even reservoirs that are currently free of aquatic plants may be invaded. Early detection is critical to effective implementation of rapid response procedures for invasive aquatic plant control. Annual survey of the most productive reservoirs is recommended to document introduction of new species. Plant community composition changes during the growing season, and multiple surveys during the growing season are preferred over one-time visits. Management of established populations of invasive species in the reservoirs will be difficult. Where invasive plant abundance is limited in area and number management activities may be implemented to slow dispersal and perhaps eradicate the plants. Integrated pest management procedures should be followed to ensure effective and economical aquatic plant control. Close

• 4. [Article] The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats

  Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation ...

  Citation × Citation Citation Abstract Copy Title: The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats Author: McClees, Whitney, de Rivera, Catherine E. Year: 2017 Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation is limiting the spread of non-native species, while other research has indicated that it is dispersal-driven. To determine the effects of dispersal limitation and predation on the risk to surrounding habitats of being invaded by non-native species established on marina docks, we used a three-factor design, deploying seven unglazed ceramic panels per each treatment combination of 1) inside versus outside a marina in Yaquina Bay, Oregon; 2) cage keeping out predators >mesh size, no cage, or partial cage; 3) fixed near the substrata (benthic) versus floating 1m below the surface. We also moved panels of either adults or recruits from floating in the marina to any of the treatment combinations to test if they would have lower survival outside by the substrate. The community on panels suspended in the marina only minimally overlapped with panels outside of the marina near the bottom. However, there was no difference between the cage treatments, which suggests that predators excluded by the cages are not responsible for the observed differences in species richness or composition. Title: The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats Author: McClees, Whitney, de Rivera, Catherine E. Year: 2017 Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation is limiting the spread of non-native species, while other research has indicated that it is dispersal-driven. To determine the effects of dispersal limitation and predation on the risk to surrounding habitats of being invaded by non-native species established on marina docks, we used a three-factor design, deploying seven unglazed ceramic panels per each treatment combination of 1) inside versus outside a marina in Yaquina Bay, Oregon; 2) cage keeping out predators >mesh size, no cage, or partial cage; 3) fixed near the substrata (benthic) versus floating 1m below the surface. We also moved panels of either adults or recruits from floating in the marina to any of the treatment combinations to test if they would have lower survival outside by the substrate. The community on panels suspended in the marina only minimally overlapped with panels outside of the marina near the bottom. However, there was no difference between the cage treatments, which suggests that predators excluded by the cages are not responsible for the observed differences in species richness or composition. Close

• 5. [Article] Climate Change Effects on Northern Great Lake (USA) Forests: A Case for Preserving Diversity

  Under business as usual (BAU) management, stresses posed by climate change may exceed the ability of Great Lake forests to adapt. Temperature and precipitation projections in the Great Lakes region are ...

  Citation × Citation Citation Abstract Copy Title: Climate Change Effects on Northern Great Lake (USA) Forests: A Case for Preserving Diversity Author: Duveneck, Matthew Joshua, Scheller, Robert M., White, Mark A., Handler, Stephen D., Ravenscroft, Catherine Year: 2014 Under business as usual (BAU) management, stresses posed by climate change may exceed the ability of Great Lake forests to adapt. Temperature and precipitation projections in the Great Lakes region are expected to change forest tree species composition and productivity. It is unknown how a change in productivity and/or tree species diversity due to climate change will affect the relationship between diversity and productivity. We assessed how forests in two landscapes (i.e., northern lower Michigan and northeastern Minnesota, USA) would respond to climate change and explored the diversityproductivity relationship under climate change. In addition, we explored how tree species diversity varied across landscapes by soil type, climate, and management. We used a spatially dynamic forest ecosystem model, LANDIS-II, to simulate BAU forest management under three climate scenarios (current climate, low emissions, and high emissions) in each landscape. We found a positive relationship between diversity and productivity only under a high emissions future as productivity declined. Within landscapes, climate change simulations resulted in the highest diversity in the coolest climate regions and lowest diversity in the warmest climate region in Minnesota and Michigan, respectively. Simulated productivity declined in both landscapes under the high emissions climate scenario as species such as balsam fir (Abies balsamea) declined in abundance. In the Great Lakes region, a high emissions future may decrease forest productivity creating a more positive relationship between diversity and productivity. Maintaining a diversity of tree species may become increasingly important to maintain the adaptive capacity of forests. Title: Climate Change Effects on Northern Great Lake (USA) Forests: A Case for Preserving Diversity Author: Duveneck, Matthew Joshua, Scheller, Robert M., White, Mark A., Handler, Stephen D., Ravenscroft, Catherine Year: 2014 Under business as usual (BAU) management, stresses posed by climate change may exceed the ability of Great Lake forests to adapt. Temperature and precipitation projections in the Great Lakes region are expected to change forest tree species composition and productivity. It is unknown how a change in productivity and/or tree species diversity due to climate change will affect the relationship between diversity and productivity. We assessed how forests in two landscapes (i.e., northern lower Michigan and northeastern Minnesota, USA) would respond to climate change and explored the diversityproductivity relationship under climate change. In addition, we explored how tree species diversity varied across landscapes by soil type, climate, and management. We used a spatially dynamic forest ecosystem model, LANDIS-II, to simulate BAU forest management under three climate scenarios (current climate, low emissions, and high emissions) in each landscape. We found a positive relationship between diversity and productivity only under a high emissions future as productivity declined. Within landscapes, climate change simulations resulted in the highest diversity in the coolest climate regions and lowest diversity in the warmest climate region in Minnesota and Michigan, respectively. Simulated productivity declined in both landscapes under the high emissions climate scenario as species such as balsam fir (Abies balsamea) declined in abundance. In the Great Lakes region, a high emissions future may decrease forest productivity creating a more positive relationship between diversity and productivity. Maintaining a diversity of tree species may become increasingly important to maintain the adaptive capacity of forests. Close

• 6. [Article] Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives

  Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in ...

  Citation × Citation Citation Abstract Copy Title: Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives Author: Strecker, Angela L., Brittain, Jeffrey Thomas Year: 2017 Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in the largest water development project in the US history, the Columbia Basin Project (CBP; eastern Washington, USA), which also altered environmental conditions; however, the ecological consequences are largely unknown. Using a historical dataset, we examined long-term patterns in zooplankton communities, water chemistry and clarity, testing the hypothesis that increased connectivity will result in taxonomic homogenization. Further, we tested contemporary drivers of communities using a comprehensive set of environmental and landscape variables. Waterbodies were sampled for zooplankton community composition as well as physical and chemical variables inside and outside the CBP using methods consistent with historical studies. We found significant declines in salinity inside the CBP, whereas changes in water clarity were prevalent across all waterbodies. Increased connectivity via canals homogenized zooplankton communities over time, as well as increasing regional richness. Other long-term changes in zooplankton communities may be related to climate change, invasive species, and land-use changes. Synthesis and applications. Though canals may offer species spatial refugia, homogenization may decrease resilience to environmental stressors. These new hybrid aquatic landscapes, or hydroscapes, should be considered carefully in future water development, including specific plans for monitoring of species and environmental conditions, as well as mitigation of undesirable conditions and/or non-native species. Title: Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives Author: Strecker, Angela L., Brittain, Jeffrey Thomas Year: 2017 Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in the largest water development project in the US history, the Columbia Basin Project (CBP; eastern Washington, USA), which also altered environmental conditions; however, the ecological consequences are largely unknown. Using a historical dataset, we examined long-term patterns in zooplankton communities, water chemistry and clarity, testing the hypothesis that increased connectivity will result in taxonomic homogenization. Further, we tested contemporary drivers of communities using a comprehensive set of environmental and landscape variables. Waterbodies were sampled for zooplankton community composition as well as physical and chemical variables inside and outside the CBP using methods consistent with historical studies. We found significant declines in salinity inside the CBP, whereas changes in water clarity were prevalent across all waterbodies. Increased connectivity via canals homogenized zooplankton communities over time, as well as increasing regional richness. Other long-term changes in zooplankton communities may be related to climate change, invasive species, and land-use changes. Synthesis and applications. Though canals may offer species spatial refugia, homogenization may decrease resilience to environmental stressors. These new hybrid aquatic landscapes, or hydroscapes, should be considered carefully in future water development, including specific plans for monitoring of species and environmental conditions, as well as mitigation of undesirable conditions and/or non-native species. Close

• 7. [Article] The McKee Preserve Management Options at Bandon Dunes Golf Resort

  The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. ...

  Citation × Citation Citation Abstract Copy Title: The McKee Preserve Management Options at Bandon Dunes Golf Resort Author: Edwards, Ashley Marie Year: 2009 The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. One important resource is silvery phacelia (Phacelia argentea), which is a state threatened plant species and is a species of concern federally. The goal of this project was to perform plant inventories for silvery phacelia and kinnikinnick that will be used to establish a functional management plan for the Preserve. Other resources of interest to the Preserve have been included in the literature review and management plan. A proposed par 3 golf course has also been included in the analysis and management plan of the report. Using Geographical Information Systems and Global Positioning Systems to conduct the silvery phacelia inventory showed that there are 6,803 individual plants at the Resort and 5,078 plants on the Preserve. A silvery phacelia community was found north of Cut Creek, which has not been listed as a historical site for this species. The species most likely established itself through fill materials that were seed rich, when building the second golf course on the property, Pacific Dunes. The kinnikinnick meadows have been reduced from building and opening Bandon Trails Golf Course. The remaining meadows are 1.4 acres in size. The par 3 golf course, if built, will be located in the northern portion of the Preserve and would share access with Bandon Trails Golf Course. Out of the 11 proposed holes, 9 have been approved so that impacts to the silvery phacelia will be minimized. Title: The McKee Preserve Management Options at Bandon Dunes Golf Resort Author: Edwards, Ashley Marie Year: 2009 The McKee Preserve is a new conservation area at Bandon Dunes Golf Resort, located on the southern Oregon coast. The Preserve is 250 acres in size and is made up of 13 different natural resource communities. One important resource is silvery phacelia (Phacelia argentea), which is a state threatened plant species and is a species of concern federally. The goal of this project was to perform plant inventories for silvery phacelia and kinnikinnick that will be used to establish a functional management plan for the Preserve. Other resources of interest to the Preserve have been included in the literature review and management plan. A proposed par 3 golf course has also been included in the analysis and management plan of the report. Using Geographical Information Systems and Global Positioning Systems to conduct the silvery phacelia inventory showed that there are 6,803 individual plants at the Resort and 5,078 plants on the Preserve. A silvery phacelia community was found north of Cut Creek, which has not been listed as a historical site for this species. The species most likely established itself through fill materials that were seed rich, when building the second golf course on the property, Pacific Dunes. The kinnikinnick meadows have been reduced from building and opening Bandon Trails Golf Course. The remaining meadows are 1.4 acres in size. The par 3 golf course, if built, will be located in the northern portion of the Preserve and would share access with Bandon Trails Golf Course. Out of the 11 proposed holes, 9 have been approved so that impacts to the silvery phacelia will be minimized. Close

• 8. [Article] Mechanisms of Methane Transport Through Trees

  Although the dynamics of methane (CH4) emission from croplands and wetlands have been fairly well investigated, the contribution of trees to global methane emission and the mechanisms of tree transport ...

  Citation × Citation Citation Abstract Copy Title: Mechanisms of Methane Transport Through Trees Author: Kutschera, Ellynne Marie Year: 2013 Although the dynamics of methane (CH4) emission from croplands and wetlands have been fairly well investigated, the contribution of trees to global methane emission and the mechanisms of tree transport are relatively unknown. Methane emissions from the common wetland tree species Populus trichocarpa (black cottonwood) native to the Pacific Northwest were measured under hydroponic conditions in order to separate plant transport mechanisms from the influence of soil processes. Roots were exposed to methane enriched water and canopy emissions of methane were measured using a canopy enclosure. Methane accumulation in the canopy was generally linear and the average canopy methane flux was 3.0 ± 2.6 μg CH4 min-1. Flux magnitudes from stem experiments scaled to the area of the main tree stem are comparable to whole-canopy flux values, indicating that the majority of methane emitted from the tree leaves through the stem. Samples for stable carbon isotope composition were taken during the canopy experiments. Compared to the isotopic composition of root water methane, canopy methane was depleted in 13C on average by 8.6 ± 3.3 permil; this indicates that methane moving through the tree is not following a purely bulk flow pathway (where no depletion would occur), but is instead subject to at least one fractionating mechanism. When temperature was varied, the flux at the coolest temperature was significantly different from the higher flux at the warmest temperature (p-value less than 0.02). The calculated Q10 for methane flux was 2.4, which indicates a positive feedback with temperature increase. Analysis of δ13C values of emitted CH4 in the temperature experiments shows increasing depletion with cooler temperatures and lower flux. This indicates that not only does the magnitude of flux vary with temperature, but the actual dominant transport mechanism changes as well. Title: Mechanisms of Methane Transport Through Trees Author: Kutschera, Ellynne Marie Year: 2013 Although the dynamics of methane (CH4) emission from croplands and wetlands have been fairly well investigated, the contribution of trees to global methane emission and the mechanisms of tree transport are relatively unknown. Methane emissions from the common wetland tree species Populus trichocarpa (black cottonwood) native to the Pacific Northwest were measured under hydroponic conditions in order to separate plant transport mechanisms from the influence of soil processes. Roots were exposed to methane enriched water and canopy emissions of methane were measured using a canopy enclosure. Methane accumulation in the canopy was generally linear and the average canopy methane flux was 3.0 ± 2.6 μg CH4 min-1. Flux magnitudes from stem experiments scaled to the area of the main tree stem are comparable to whole-canopy flux values, indicating that the majority of methane emitted from the tree leaves through the stem. Samples for stable carbon isotope composition were taken during the canopy experiments. Compared to the isotopic composition of root water methane, canopy methane was depleted in 13C on average by 8.6 ± 3.3 permil; this indicates that methane moving through the tree is not following a purely bulk flow pathway (where no depletion would occur), but is instead subject to at least one fractionating mechanism. When temperature was varied, the flux at the coolest temperature was significantly different from the higher flux at the warmest temperature (p-value less than 0.02). The calculated Q10 for methane flux was 2.4, which indicates a positive feedback with temperature increase. Analysis of δ13C values of emitted CH4 in the temperature experiments shows increasing depletion with cooler temperatures and lower flux. This indicates that not only does the magnitude of flux vary with temperature, but the actual dominant transport mechanism changes as well. Close

• 9. [Article] Empirical Evidence for the Scale Dependence of Biotic Interactions

  Aim: Although it is recognized that ecological patterns are scale dependent, the exact scales over which specific ecological processes operate are still a matter of controversy. In particular, understanding ...

  Citation × Citation Citation Abstract Copy Title: Empirical Evidence for the Scale Dependence of Biotic Interactions Author: Belmaker, Jonathan, Zarnetske, Phoebe, Zonneveld, Sara, Record, Sydne, Strecker, Angela L., Beaudrot, Lydia Year: 2015 Aim: Although it is recognized that ecological patterns are scale dependent, the exact scales over which specific ecological processes operate are still a matter of controversy. In particular, understanding the scales over which biotic interactions operate is critical for predicting changes in species distributions in the face of the ongoing biodiversity crisis. It has been hypothesized that biotic interactions operate predominately at fine grains, yet this conjecture has received relatively little empirical scrutiny. We use US woodpeckers as a model system to assess the relative importance of biotic interactions, environmental suitability and geographic proximity to other intraspecific occurrence sites, across scales. Methods: We combined species occurrence data from the North American Breeding Bird Survey (BBS) with a large pair-wise interaction matrix describing known interactions among woodpeckers and other bird species. Using a logistic mixed modelling framework we then established the relative importance of biotic interactions as predictors of woodpecker occurrences in relation to environment and geographic proximity to intraspecific occurrence sites. Results: We found that geographic proximity becomes a stronger predictor of woodpecker occurrence as grain becomes coarser, while environment is grain-invariant. As opposed to environment and geographic proximity, we found that when the focal species experienced positive biotic interactions, the importance of interactions decreased with increased grain. However, positive interactions remained important up to a grain size of entire BBS routes (c. 40 km), which is much coarser than the grain size used by most species distribution models. In contrast, when the focal species experienced negative interactions we did not find clear grain dependence. Main conclusions: Biotic interactions (both positive and negative) are important predictors of species occurrences. While these interactions are strongest at fine grains, they can remain important even at coarse grains, and are thus critical for predicting distributional changes in the face of the ongoing biodiversity crisis. Title: Empirical Evidence for the Scale Dependence of Biotic Interactions Author: Belmaker, Jonathan, Zarnetske, Phoebe, Zonneveld, Sara, Record, Sydne, Strecker, Angela L., Beaudrot, Lydia Year: 2015 Aim: Although it is recognized that ecological patterns are scale dependent, the exact scales over which specific ecological processes operate are still a matter of controversy. In particular, understanding the scales over which biotic interactions operate is critical for predicting changes in species distributions in the face of the ongoing biodiversity crisis. It has been hypothesized that biotic interactions operate predominately at fine grains, yet this conjecture has received relatively little empirical scrutiny. We use US woodpeckers as a model system to assess the relative importance of biotic interactions, environmental suitability and geographic proximity to other intraspecific occurrence sites, across scales. Methods: We combined species occurrence data from the North American Breeding Bird Survey (BBS) with a large pair-wise interaction matrix describing known interactions among woodpeckers and other bird species. Using a logistic mixed modelling framework we then established the relative importance of biotic interactions as predictors of woodpecker occurrences in relation to environment and geographic proximity to intraspecific occurrence sites. Results: We found that geographic proximity becomes a stronger predictor of woodpecker occurrence as grain becomes coarser, while environment is grain-invariant. As opposed to environment and geographic proximity, we found that when the focal species experienced positive biotic interactions, the importance of interactions decreased with increased grain. However, positive interactions remained important up to a grain size of entire BBS routes (c. 40 km), which is much coarser than the grain size used by most species distribution models. In contrast, when the focal species experienced negative interactions we did not find clear grain dependence. Main conclusions: Biotic interactions (both positive and negative) are important predictors of species occurrences. While these interactions are strongest at fine grains, they can remain important even at coarse grains, and are thus critical for predicting distributional changes in the face of the ongoing biodiversity crisis. Close

• 10. [Article] Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach

  Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of ...

  Citation × Citation Citation Abstract Copy Title: Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach Author: Prichard, Emma C, Granek, Elise F. Year: 2016 Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of literature reporting the effects of PPCPs on freshwater organisms, but studies on the effects of PPCPs to marine and estuarine organisms are limited. Among effect studies, the vast majority examines subcellular or cellular effects, with far fewer studies examining organismal- and community-level effects. We reviewed the current published literature on marine and estuarine algae, invertebrates, fish, and mammals exposed to PPCPs, in order to expand upon current reviews. This paper builds on previous reviews of PPCP contamination in marine environments, filling prior literature gaps and adding consideration of ecosystem function and level of knowledge across marine habitat types. Finally, we reviewed and compiled data gaps suggested by current researchers and reviewers and propose a multi-level model to expand the focus of current PPCP research beyond laboratory studies. This model includes examination of direct ecological effects including food web and disease dynamics, biodiversity, community composition, and other ecosystem-level indicators of contaminant-driven change. Title: Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach Author: Prichard, Emma C, Granek, Elise F. Year: 2016 Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of literature reporting the effects of PPCPs on freshwater organisms, but studies on the effects of PPCPs to marine and estuarine organisms are limited. Among effect studies, the vast majority examines subcellular or cellular effects, with far fewer studies examining organismal- and community-level effects. We reviewed the current published literature on marine and estuarine algae, invertebrates, fish, and mammals exposed to PPCPs, in order to expand upon current reviews. This paper builds on previous reviews of PPCP contamination in marine environments, filling prior literature gaps and adding consideration of ecosystem function and level of knowledge across marine habitat types. Finally, we reviewed and compiled data gaps suggested by current researchers and reviewers and propose a multi-level model to expand the focus of current PPCP research beyond laboratory studies. This model includes examination of direct ecological effects including food web and disease dynamics, biodiversity, community composition, and other ecosystem-level indicators of contaminant-driven change. Close

• 11. [Article] Effectiveness of Fuel Treatments for Mitigating Wildfire Risk and Sequestering Forest Carbon: A Case Study in the Lake Tahoe Basin

  Fuel-reduction treatments are used extensively to reduce wildfire risk and restore forest diversity and function. In the near future, increasing regulation of carbon (C) emissions may force forest managers ...

  Citation × Citation Citation Abstract Copy Title: Effectiveness of Fuel Treatments for Mitigating Wildfire Risk and Sequestering Forest Carbon: A Case Study in the Lake Tahoe Basin Author: Loudermilk, E. Louise, Stanton, Alison, Scheller, Robert M., Dilts, Thomas E., Weisberg, Peter J., Skinner, Carl, Yang, Jian Year: 2014 Fuel-reduction treatments are used extensively to reduce wildfire risk and restore forest diversity and function. In the near future, increasing regulation of carbon (C) emissions may force forest managers to balance the use of fuel treatments for reducing wildfire risk against an alternative goal of C sequestration. The objective of this study was to evaluate how long-term fuel treatments mitigate wildfires and affect forest C. For the Lake Tahoe Basin in the central Sierra Nevada, USA, fuel treatment efficiency was explored with a landscape-scale simulation model, LANDIS-II, using five fuel treatment scenarios and two (contemporary and potential future) fire regimes. Treatment scenarios included applying a combination of light (hand) and moderate (mechanical) forest thinning continuously through time and transitioning from these prescriptions to a more mid-seral thinning prescription, both on a 15 and 30 year rotation interval. In the last scenario, fuel treatments were isolated to around the lake shore (nearby urban settlement) to simulate a low investment alternative were future resources may be limited. Results indicated that the forest will remain a C sink regardless of treatment or fire regime simulated, due to the landscape legacy of historic logging. Achievement of a net C gain required decades with intensive treatment and depended on wildfire activity: Fuel treatments were more effective in a more active fire environment, where the interface between wildfires and treatment areas increased and caused net C gain earlier than as compared to our scenarios with less wildfire activity. Fuel treatments were most effective when continuously applied and strategically placed in high ignition areas. Treatment type and re-application interval were less influential at the landscape scale, but had notable effects on species dynamics within management units. Treatments created more diverse forest conditions by shifting dominance patterns to a more mixed conifer system, with a higher proportion of fire-tolerant species. We demonstrated that a small amount of wildfire on the landscape resulted in significant changes in the C pool, and that strategically placed fuel treatments substantially reduced wildfire risk, increased fire resiliency of the forest, and is beneficial for long-term C management. Implications for landscape management included consideration for prioritization of treatment areas and creating ideal re-entry schedules that meet logistic, safety, and conservation goals. In forests with a concentrated wildland urban interface, fuel treatments may be vital for ensuring human welfare and enhancing forest integrity in a fire-prone future. Title: Effectiveness of Fuel Treatments for Mitigating Wildfire Risk and Sequestering Forest Carbon: A Case Study in the Lake Tahoe Basin Author: Loudermilk, E. Louise, Stanton, Alison, Scheller, Robert M., Dilts, Thomas E., Weisberg, Peter J., Skinner, Carl, Yang, Jian Year: 2014 Fuel-reduction treatments are used extensively to reduce wildfire risk and restore forest diversity and function. In the near future, increasing regulation of carbon (C) emissions may force forest managers to balance the use of fuel treatments for reducing wildfire risk against an alternative goal of C sequestration. The objective of this study was to evaluate how long-term fuel treatments mitigate wildfires and affect forest C. For the Lake Tahoe Basin in the central Sierra Nevada, USA, fuel treatment efficiency was explored with a landscape-scale simulation model, LANDIS-II, using five fuel treatment scenarios and two (contemporary and potential future) fire regimes. Treatment scenarios included applying a combination of light (hand) and moderate (mechanical) forest thinning continuously through time and transitioning from these prescriptions to a more mid-seral thinning prescription, both on a 15 and 30 year rotation interval. In the last scenario, fuel treatments were isolated to around the lake shore (nearby urban settlement) to simulate a low investment alternative were future resources may be limited. Results indicated that the forest will remain a C sink regardless of treatment or fire regime simulated, due to the landscape legacy of historic logging. Achievement of a net C gain required decades with intensive treatment and depended on wildfire activity: Fuel treatments were more effective in a more active fire environment, where the interface between wildfires and treatment areas increased and caused net C gain earlier than as compared to our scenarios with less wildfire activity. Fuel treatments were most effective when continuously applied and strategically placed in high ignition areas. Treatment type and re-application interval were less influential at the landscape scale, but had notable effects on species dynamics within management units. Treatments created more diverse forest conditions by shifting dominance patterns to a more mixed conifer system, with a higher proportion of fire-tolerant species. We demonstrated that a small amount of wildfire on the landscape resulted in significant changes in the C pool, and that strategically placed fuel treatments substantially reduced wildfire risk, increased fire resiliency of the forest, and is beneficial for long-term C management. Implications for landscape management included consideration for prioritization of treatment areas and creating ideal re-entry schedules that meet logistic, safety, and conservation goals. In forests with a concentrated wildland urban interface, fuel treatments may be vital for ensuring human welfare and enhancing forest integrity in a fire-prone future. Close

• 12. [Article] Siltcoos Lake Nonpoint Source Implementation Grant: Water Quality Conditions and Nutrient Sources

  Siltcoos Lake is a large (1280 hectares), shallow (mean depth 3.3 m; maximum depth 6.7 m) lake located on the Central Oregon Coast, just south of Florence and bordered by Dunes City, Oregon. The outflow ...

  Citation × Citation Citation Abstract Copy Title: Siltcoos Lake Nonpoint Source Implementation Grant: Water Quality Conditions and Nutrient Sources Author: Sytsma, Mark D., Miller, Rich Year: 2010 Siltcoos Lake is a large (1280 hectares), shallow (mean depth 3.3 m; maximum depth 6.7 m) lake located on the Central Oregon Coast, just south of Florence and bordered by Dunes City, Oregon. The outflow and water level of Siltcoos Lake is regulated by a dam on the Siltcoos River 4 km upstream from the Pacific. Several permanent streams feed the lake from its 176 square kilometer watershed including Fiddle Creek, Maple Creek, and Woahink Creek, the outflow from Woahink Lake. Much of the watershed is forested and used for timber harvest, residential development, and limited agricultural production. The lake is popular for recreational activities, particularly fishing for wild coastal Coho salmon, rainbow trout, cutthroat trout, largemouth bass, bluegill, crappie, and yellow perch (Buckman 2004). The lake is also the domestic drinking water source for approximately 125 of the 1330 residents of Dunes City and numerous residents outside the city limits within Lane and Douglas Counties (LCOG 2002). During the fall of 2007 a dense bloom of the potentially toxigenic blue-green algal species Anabaena planktonica prompted Dunes City, the South Coast Water District, the Lane County Health Department, and the Oregon Department of Human Services to issue an advisory against usage of Siltcoos Lake water for drinking and other domestic use (DHS 2007). Residents dependent upon Siltcoos Lake were forced to find alternate domestic water sources for a total of 52 days. This incident was part of a long history of water quality problems including dense algal growth and excessive growth of the non-native aquatic macrophytes Brazilian elodea (Egeria densa), parrotsfeather (Myriophyllum aquaticum), and two-leaf water milfoil (Myriophyllum heterophyllum) (Pfauth and Sytsma 2005; Johnson et al. 1985; McHugh 1979). Because of the water quality problems, the Oregon Department of Environmental Quality (DEQ) placed the lake the 303(d) list of impaired water bodies; specifically due to violations of the “aquatic weeds and algae” water quality criterion (DEQ 1998; DEQ 2006). Dunes City has acted on water quality concerns for both Siltcoos and Woahink Lakes by issuing a temporary building moratorium (Dunes City 2006a), a septic tank maintenance ordinance (Dunes City 2006b), and an ordinance limiting phosphorus use (Dunes City 2007). Preliminary assessments (Johnson, et al. 1985, LCOG 2002) indicate multiple sources of water quality problems including excess nutrient and/or sediment loading from residential development, poorly functioning on-site septic systems, private forestry and agricultural practices and introductions of non-native aquatic plant species. This report summarizes data collected by Portland State University and project partners between June 2008 and May 2009 to better define water quality conditions within the lake as well as potential nutrient sources. Physical, chemical, and biological data were collected at lake and tributary sites over the one year period. Data were evaluated across sites, depth and the season. The information collected will contribute to total maximum daily load (TMDL) development for the Midcoast Lakes and can be used to identify and prioritize restoration activities in the Siltcoos Lake watershed. Title: Siltcoos Lake Nonpoint Source Implementation Grant: Water Quality Conditions and Nutrient Sources Author: Sytsma, Mark D., Miller, Rich Year: 2010 Siltcoos Lake is a large (1280 hectares), shallow (mean depth 3.3 m; maximum depth 6.7 m) lake located on the Central Oregon Coast, just south of Florence and bordered by Dunes City, Oregon. The outflow and water level of Siltcoos Lake is regulated by a dam on the Siltcoos River 4 km upstream from the Pacific. Several permanent streams feed the lake from its 176 square kilometer watershed including Fiddle Creek, Maple Creek, and Woahink Creek, the outflow from Woahink Lake. Much of the watershed is forested and used for timber harvest, residential development, and limited agricultural production. The lake is popular for recreational activities, particularly fishing for wild coastal Coho salmon, rainbow trout, cutthroat trout, largemouth bass, bluegill, crappie, and yellow perch (Buckman 2004). The lake is also the domestic drinking water source for approximately 125 of the 1330 residents of Dunes City and numerous residents outside the city limits within Lane and Douglas Counties (LCOG 2002). During the fall of 2007 a dense bloom of the potentially toxigenic blue-green algal species Anabaena planktonica prompted Dunes City, the South Coast Water District, the Lane County Health Department, and the Oregon Department of Human Services to issue an advisory against usage of Siltcoos Lake water for drinking and other domestic use (DHS 2007). Residents dependent upon Siltcoos Lake were forced to find alternate domestic water sources for a total of 52 days. This incident was part of a long history of water quality problems including dense algal growth and excessive growth of the non-native aquatic macrophytes Brazilian elodea (Egeria densa), parrotsfeather (Myriophyllum aquaticum), and two-leaf water milfoil (Myriophyllum heterophyllum) (Pfauth and Sytsma 2005; Johnson et al. 1985; McHugh 1979). Because of the water quality problems, the Oregon Department of Environmental Quality (DEQ) placed the lake the 303(d) list of impaired water bodies; specifically due to violations of the “aquatic weeds and algae” water quality criterion (DEQ 1998; DEQ 2006). Dunes City has acted on water quality concerns for both Siltcoos and Woahink Lakes by issuing a temporary building moratorium (Dunes City 2006a), a septic tank maintenance ordinance (Dunes City 2006b), and an ordinance limiting phosphorus use (Dunes City 2007). Preliminary assessments (Johnson, et al. 1985, LCOG 2002) indicate multiple sources of water quality problems including excess nutrient and/or sediment loading from residential development, poorly functioning on-site septic systems, private forestry and agricultural practices and introductions of non-native aquatic plant species. This report summarizes data collected by Portland State University and project partners between June 2008 and May 2009 to better define water quality conditions within the lake as well as potential nutrient sources. Physical, chemical, and biological data were collected at lake and tributary sites over the one year period. Data were evaluated across sites, depth and the season. The information collected will contribute to total maximum daily load (TMDL) development for the Midcoast Lakes and can be used to identify and prioritize restoration activities in the Siltcoos Lake watershed. Close

• 13. [Article] Increased Taxonomic and Functional Similarity Does Not Increase the Trophic Similarity of Communities

  Aim: Despite a long-standing research interest in the association between the biodiversity (i.e. taxonomic and functional composition) and trophic structure of communities, our understanding of the relationship ...

  Citation × Citation Citation Abstract Copy Title: Increased Taxonomic and Functional Similarity Does Not Increase the Trophic Similarity of Communities Author: Pool, Thomas K., Cucherousset, Julien, Boulêtreau, Stéphanie, Villéger, Sébastien, Strecker, Angela L., Grenouillet, Gaël Year: 2015 Aim: Despite a long-standing research interest in the association between the biodiversity (i.e. taxonomic and functional composition) and trophic structure of communities, our understanding of the relationship remains limited. Community assembly theory predicts that niche partitioning will result in communities with a diverse array of functional traits, which in turn may facilitate a correspondingly diverse array of trophic interactions that define the trophic niche of those communities. The aim of our study is to test this prediction. Methods: We built a database composed of functional traits and stable isotope values (δ13C and δ15N) for 63 freshwater fish communities containing 109 species in 34 lentic and 29 lotic ecosystems. First, using linear mixed models (i.e. an alpha-diversity approach), we tested whether the taxonomic diversity of communities was positively associated with their functional diversity and if their functional diversity was positively associated with their trophic diversity. Second, we assessed the taxonomic, functional and trophic similarity of communities using multiple regression on distance matrices (MRM) and their respective ‘turnover’ and ‘nestedness-resultant’ components to test if the taxonomic similarity of communities was positively correlated with their functional similarity and if their functional similarity was positively associated with their trophic similarity (i.e. a beta-diversity approach). Results: We found that the functional diversity of communities increased as their taxonomic diversity increased. Similarly, the trophic diversity of communities increased as their functional diversity increased. The pairwise taxonomic and functional similarity of communities were also positively associated, but there was a weak relationship between the functional and trophic similarities of communities. Main conclusions: Our study demonstrates that communities with similar functional characteristics can have disparate food web structures, suggesting that additional site-specific factors influence community variation in trophic niche geometry. Determining the relative importance of functional characteristics and site-specific factors in shaping trophic interactions is crucial for a better understanding of how future species loss and species introductions will affect food web structure and ecosystem functioning. Title: Increased Taxonomic and Functional Similarity Does Not Increase the Trophic Similarity of Communities Author: Pool, Thomas K., Cucherousset, Julien, Boulêtreau, Stéphanie, Villéger, Sébastien, Strecker, Angela L., Grenouillet, Gaël Year: 2015 Aim: Despite a long-standing research interest in the association between the biodiversity (i.e. taxonomic and functional composition) and trophic structure of communities, our understanding of the relationship remains limited. Community assembly theory predicts that niche partitioning will result in communities with a diverse array of functional traits, which in turn may facilitate a correspondingly diverse array of trophic interactions that define the trophic niche of those communities. The aim of our study is to test this prediction. Methods: We built a database composed of functional traits and stable isotope values (δ13C and δ15N) for 63 freshwater fish communities containing 109 species in 34 lentic and 29 lotic ecosystems. First, using linear mixed models (i.e. an alpha-diversity approach), we tested whether the taxonomic diversity of communities was positively associated with their functional diversity and if their functional diversity was positively associated with their trophic diversity. Second, we assessed the taxonomic, functional and trophic similarity of communities using multiple regression on distance matrices (MRM) and their respective ‘turnover’ and ‘nestedness-resultant’ components to test if the taxonomic similarity of communities was positively correlated with their functional similarity and if their functional similarity was positively associated with their trophic similarity (i.e. a beta-diversity approach). Results: We found that the functional diversity of communities increased as their taxonomic diversity increased. Similarly, the trophic diversity of communities increased as their functional diversity increased. The pairwise taxonomic and functional similarity of communities were also positively associated, but there was a weak relationship between the functional and trophic similarities of communities. Main conclusions: Our study demonstrates that communities with similar functional characteristics can have disparate food web structures, suggesting that additional site-specific factors influence community variation in trophic niche geometry. Determining the relative importance of functional characteristics and site-specific factors in shaping trophic interactions is crucial for a better understanding of how future species loss and species introductions will affect food web structure and ecosystem functioning. Close

• 14. [Article] Application of GIS and Spatial Analysis of Golden Eagle Fatalities Caused by Wind Turbines at the Altamont Pass Wind Resource

  The Altamont Pass Wind Resource Area (Altamont) near Livermore, California is the oldest and largest wind farm in the United States. It is known as a location of high avian mortality, especially for diurnal ...

  Citation × Citation Citation Abstract Copy Title: Application of GIS and Spatial Analysis of Golden Eagle Fatalities Caused by Wind Turbines at the Altamont Pass Wind Resource Author: Pinger, Andrew James Year: 2013 The Altamont Pass Wind Resource Area (Altamont) near Livermore, California is the oldest and largest wind farm in the United States. It is known as a location of high avian mortality, especially for diurnal raptors such as the Golden Eagle (Aquila chrysaetos). Using the avian monitoring data collected at Altamont for over thirteen years (1998-2003, 2005- 2011), records were analyzed of 134 golden eagle deaths caused by wind turbine collisions. All wind turbines present during the same temporal range were characterized according to turbine variables, and geographic placement characteristics. Values of turbines that killed golden eagles were compared to values of turbnes that did not. It was discovered that turbines that have killed golden eagles (kill turbines) share characteristics that are significantly different from those that have not. Kill turbines are more often situated on lattice structure towers, have larger rotor blade-swept areas, placed in less dense turbine arrays, are further away from the next nearest turbine and are less often placed on top of ridgelines compared to nonkill turbines. Finally, kill turbines are more often situated at the end of a turbine row than are nonkill turbines. The differences between kill and nonkill turbine model, hill slope, tower height, generating capacity, array diversity, row count of turbines and placement in a hill saddle were found to be not significant. These findings support in part, earlier turbine studies at Altamont, but do not concur with all previous findings. The methods used in this study can be applied to any bird species at Altamont and at any wind resource area throughout the world. As the wind industry continues to grow, techniques used in studies such as this are an important tool that can be used to direct wildlife conservation policies. Title: Application of GIS and Spatial Analysis of Golden Eagle Fatalities Caused by Wind Turbines at the Altamont Pass Wind Resource Author: Pinger, Andrew James Year: 2013 The Altamont Pass Wind Resource Area (Altamont) near Livermore, California is the oldest and largest wind farm in the United States. It is known as a location of high avian mortality, especially for diurnal raptors such as the Golden Eagle (Aquila chrysaetos). Using the avian monitoring data collected at Altamont for over thirteen years (1998-2003, 2005- 2011), records were analyzed of 134 golden eagle deaths caused by wind turbine collisions. All wind turbines present during the same temporal range were characterized according to turbine variables, and geographic placement characteristics. Values of turbines that killed golden eagles were compared to values of turbnes that did not. It was discovered that turbines that have killed golden eagles (kill turbines) share characteristics that are significantly different from those that have not. Kill turbines are more often situated on lattice structure towers, have larger rotor blade-swept areas, placed in less dense turbine arrays, are further away from the next nearest turbine and are less often placed on top of ridgelines compared to nonkill turbines. Finally, kill turbines are more often situated at the end of a turbine row than are nonkill turbines. The differences between kill and nonkill turbine model, hill slope, tower height, generating capacity, array diversity, row count of turbines and placement in a hill saddle were found to be not significant. These findings support in part, earlier turbine studies at Altamont, but do not concur with all previous findings. The methods used in this study can be applied to any bird species at Altamont and at any wind resource area throughout the world. As the wind industry continues to grow, techniques used in studies such as this are an important tool that can be used to direct wildlife conservation policies. Close

• 15. [Article] Carbon Dynamics in the Future Forest: the Importance of Long-Term Successional Legacy and Climate–Fire Interactions

  Understanding how climate change may influence forest carbon (C) budgets requires knowledge of forest growth relationships with regional climate, long-term forest succession, and past and future disturbances, ...

  Citation × Citation Citation Abstract Copy Title: Carbon Dynamics in the Future Forest: the Importance of Long-Term Successional Legacy and Climate–Fire Interactions Author: Loudermilk, E. Louise, Scheller, Robert M., Weisberg, Peter J., Yang, Jian, Dilts, Thomas E., Karam, Sarah L., Skinner, Carl Year: 2013 Understanding how climate change may influence forest carbon (C) budgets requires knowledge of forest growth relationships with regional climate, long-term forest succession, and past and future disturbances, such as wildfires and timber harvesting events. We used a landscape-scale model of forest succession, wildfire, and C dynamics (LANDIS-II) to evaluate the effects of a changing climate (A2 and B1 IPCC emissions; Geophysical Fluid Dynamics Laboratory General Circulation Models) on total forest C, tree species composition, and wildfire dynamics in the Lake Tahoe Basin, California, and Nevada. The independent effects of temperature and precipitation were assessed within and among climate models. Results highlight the importance of modeling forest succession and stand development processes at the landscape scale for understanding the C cycle. Due primarily to landscape legacy effects of historic logging of the Comstock Era in the late 1880s, C sequestration may continue throughout the current century, and the forest will remain a C sink (Net Ecosystem Carbon Balance > 0), regardless of climate regime. Climate change caused increases in temperatures limited simulated C sequestration potential because of augmented fire activity and reduced establishment ability of subalpine and upper montane trees. Higher temperatures influenced forest response more than reduced precipitation. As the forest reached its potential steady state, the forest could become C neutral or a C source, and climate change could accelerate this transition. The future of forest ecosystem C cycling in many forested systems worldwide may depend more on major disturbances and landscape legacies related to land use than on projected climate change alone. Title: Carbon Dynamics in the Future Forest: the Importance of Long-Term Successional Legacy and Climate–Fire Interactions Author: Loudermilk, E. Louise, Scheller, Robert M., Weisberg, Peter J., Yang, Jian, Dilts, Thomas E., Karam, Sarah L., Skinner, Carl Year: 2013 Understanding how climate change may influence forest carbon (C) budgets requires knowledge of forest growth relationships with regional climate, long-term forest succession, and past and future disturbances, such as wildfires and timber harvesting events. We used a landscape-scale model of forest succession, wildfire, and C dynamics (LANDIS-II) to evaluate the effects of a changing climate (A2 and B1 IPCC emissions; Geophysical Fluid Dynamics Laboratory General Circulation Models) on total forest C, tree species composition, and wildfire dynamics in the Lake Tahoe Basin, California, and Nevada. The independent effects of temperature and precipitation were assessed within and among climate models. Results highlight the importance of modeling forest succession and stand development processes at the landscape scale for understanding the C cycle. Due primarily to landscape legacy effects of historic logging of the Comstock Era in the late 1880s, C sequestration may continue throughout the current century, and the forest will remain a C sink (Net Ecosystem Carbon Balance > 0), regardless of climate regime. Climate change caused increases in temperatures limited simulated C sequestration potential because of augmented fire activity and reduced establishment ability of subalpine and upper montane trees. Higher temperatures influenced forest response more than reduced precipitation. As the forest reached its potential steady state, the forest could become C neutral or a C source, and climate change could accelerate this transition. The future of forest ecosystem C cycling in many forested systems worldwide may depend more on major disturbances and landscape legacies related to land use than on projected climate change alone. Close

• 16. [Article] Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline

  The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, ...

  Citation × Citation Citation Abstract Copy Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Close

• 17. [Article] FAGE determination of tropospheric HO and HO₂

  FAGE (fluorescence assay with gas expansion) was developed as a sensitive technique for the detection of low-concentration free radicals in the atmosphere. The application of FAGE to tropospheric hydroxyl ...

  Citation × Citation Citation Abstract Copy Title: FAGE determination of tropospheric HO and HO₂ Author: George, Linda Acha, Hard, Thomas M., O'Brien, Robert J. Year: 1995 FAGE (fluorescence assay with gas expansion) was developed as a sensitive technique for the detection of low-concentration free radicals in the atmosphere. The application of FAGE to tropospheric hydroxyl (H0) and hydroperoxyl (H0₂) radicals has yielded calibrated measurements of both species in both clean air and highly polluted urban air. For HO calibration, a continuously stirred tank reactor provides a uniform external HO concentration, which can be measured by gas chromatography of an HO-reactive hydrocarbon. The aerodynamics of the air-sampling process has been modeled computationally, with results that agree with empirical observations of the effects of nozzle diameter on HO loss during sampling. The authors have also modeled airborne fluid dynamics of a FAGE probe. They have recently obtained FAGE sensitivity as high as ± 1 × 10⁶ cm-³ for a 6-minute averaging period, during field studies in highly polluted Los Angeles air, yielding a 7:1 signal-to-noise ratio near midday. Multipass excitation can further improve this sensitivity. The authors summarize their recent field studies of HO and HO², current work on improved calibration methods, other improvements, and future plans. Title: FAGE determination of tropospheric HO and HO₂ Author: George, Linda Acha, Hard, Thomas M., O'Brien, Robert J. Year: 1995 FAGE (fluorescence assay with gas expansion) was developed as a sensitive technique for the detection of low-concentration free radicals in the atmosphere. The application of FAGE to tropospheric hydroxyl (H0) and hydroperoxyl (H0₂) radicals has yielded calibrated measurements of both species in both clean air and highly polluted urban air. For HO calibration, a continuously stirred tank reactor provides a uniform external HO concentration, which can be measured by gas chromatography of an HO-reactive hydrocarbon. The aerodynamics of the air-sampling process has been modeled computationally, with results that agree with empirical observations of the effects of nozzle diameter on HO loss during sampling. The authors have also modeled airborne fluid dynamics of a FAGE probe. They have recently obtained FAGE sensitivity as high as ± 1 × 10⁶ cm-³ for a 6-minute averaging period, during field studies in highly polluted Los Angeles air, yielding a 7:1 signal-to-noise ratio near midday. Multipass excitation can further improve this sensitivity. The authors summarize their recent field studies of HO and HO², current work on improved calibration methods, other improvements, and future plans. Close

• 18. [Article] Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon)

  The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater ...

  Citation × Citation Citation Abstract Copy Title: Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon) Author: Allen, Jennifer H., Odell, Turner, Babcock, Julia, Henrie, Charis Year: 2017 The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater sage-grouse while also acknowledging rural economic and community interests across eastern Oregon’s sagebrush range. A U.S. Fish and Wildlife Service (USFWS) preliminary finding that the sage-grouse warranted listing under the endangered species act, and a subsequent court settlement setting a deadline for a final listing decision were key drivers for SageCon participants to seek proactive solutions to protect the bird. A cadre of diverse Eastern Oregon stakeholders with experience working collaboratively on related public lands issues helped set the stage for the collaborative effort. As part of what the Department of the Interior described as a historic outcome, SageCon produced the 2015 Oregon Sage-Grouse Action Plan, which details voluntary and state-regulated conservation measures to preserve habitat and protect Oregon’s sage-grouse population from threats on public and private land. SageCon—as one part of a broader multi-state collaborative effort—led to a subsequent USFWS finding that the sage-grouse no longer warranted listing as endangered. In our study of this collaborative effort, we interviewed seventeen SageCon participants to identify collaborative approaches that may offer promise for other conservation and public policy efforts. We explored participant motivation for engaging in the process, collaborative process design, integration of science into the SageCon deliberations, and other experiences that interviewees found relevant. Title: Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon) Author: Allen, Jennifer H., Odell, Turner, Babcock, Julia, Henrie, Charis Year: 2017 The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater sage-grouse while also acknowledging rural economic and community interests across eastern Oregon’s sagebrush range. A U.S. Fish and Wildlife Service (USFWS) preliminary finding that the sage-grouse warranted listing under the endangered species act, and a subsequent court settlement setting a deadline for a final listing decision were key drivers for SageCon participants to seek proactive solutions to protect the bird. A cadre of diverse Eastern Oregon stakeholders with experience working collaboratively on related public lands issues helped set the stage for the collaborative effort. As part of what the Department of the Interior described as a historic outcome, SageCon produced the 2015 Oregon Sage-Grouse Action Plan, which details voluntary and state-regulated conservation measures to preserve habitat and protect Oregon’s sage-grouse population from threats on public and private land. SageCon—as one part of a broader multi-state collaborative effort—led to a subsequent USFWS finding that the sage-grouse no longer warranted listing as endangered. In our study of this collaborative effort, we interviewed seventeen SageCon participants to identify collaborative approaches that may offer promise for other conservation and public policy efforts. We explored participant motivation for engaging in the process, collaborative process design, integration of science into the SageCon deliberations, and other experiences that interviewees found relevant. Close

• 19. [Article] Climate Change, Its Effect on Migration Patterns of the Cackling Goose and White-Fronted Goose in the Willamette Valley, and Implications for Goose Management

  This thesis considers the question of whether climate change is affecting the migration patterns of geese in the Pacific Flyway, specifically cackling geese (Branta hutchinsii minima) and Pacific white-fronted ...

  Citation × Citation Citation Abstract Copy Title: Climate Change, Its Effect on Migration Patterns of the Cackling Goose and White-Fronted Goose in the Willamette Valley, and Implications for Goose Management Author: Warren, Kelly Year: 2010 This thesis considers the question of whether climate change is affecting the migration patterns of geese in the Pacific Flyway, specifically cackling geese (Branta hutchinsii minima) and Pacific white-fronted geese (Anser albifrons frontalis). Ancillary questions that are considered are as follows: • If global warming is affecting these species, what is the nature of the effects? • How are the changes affecting the human environment and what can be done about these effects? In 1994, the majority of the cackler population in the Pacific Flyway began to winter in Oregon’s Willamette Valley rather than in their historical wintering areas in California’s Central Valley. In recent years, the Pacific white-fronted goose has shown a change in behavior similar to that of cacklers just before their major shift. The reasons for this shift have not been clear, though climate change, agricultural shifts, or competition with other species were thought to be possible causes. Analyses of historical breeding and wintering surveys, bird band data, harvest data, agricultural data, and climate and weather data were undertaken in the course of this thesis to see if the cause or causes could be identified. The results showed that climate and weather data, i.e. an increase in average annual temperature coupled with occasional severe winters, most closely correlated with the cacklers’ shift northward. The data comparison revealed that there is a direct relationship between cacklers and a warming shift seen on the wintering grounds. There also was a secondary correlation between the northward shift and recent changes in agricultural crops in the Willamette Valley. Substantially less data are available for white-fronts, and the relationship between their recent migration changes and climate and/or other factors is much less clear. The following recommendations for management and further study are aimed at more completely understanding the scope and causes of migration shifts and formulating well-founded management plans for geese in the Pacific Flyway: • Continue research to determine if climate change is causing changes in goose population numbers and behavior. • Expand breeding ground flight surveys to include cacklers and habitat preference to learn how habitat change on the Y-K Delta is altering cackler behavior and breeding success. • Expand radio transmitter studies and collar programs for cacklers in Oregon and Washington to verify northerly wintering shifts. • Expand collar programs for cacklers wintering in the Willamette Valley to determine if the population is continuing to shift northward. • Expand banding programs for white-fronted geese to gather more data about migration patterns. • Develop models that will allow researchers and managers to correlate migration behavior with various environmental factors including climate change in order to: 1) determine which factors are causing migration changes in specific waterfowl populations and 2) allow managers to make changes to management plans in advance of rapid changes. • Inform the public about how it can assist in collar surveys or volunteer for the U.S. Fish and Wildlife Service (USFWS). This will enable USFWS to have more concrete data and give the public an opportunity gain a greater understanding of geese and goose management. • Expand research on urban cackling geese to determine the nature and scope of their effect on the human environment and to devise management strategies. • Research energetics in migrating geese to determine whether the shift in migration patterns has its basis in climate change. • Increase data exchange and coordination among agencies. • Formulate and implement plans at the city and county levels to manage growing numbers of geese in urban areas. • Recognize and anticipate the possibility that goose populations may move into new wintering areas and formulate plans for management of those species. • Implement low cost techniques, such as more liberal bag limits and seasons, hazing, etc., to assist agricultural landowners in decreasing goose-related crop damage. Title: Climate Change, Its Effect on Migration Patterns of the Cackling Goose and White-Fronted Goose in the Willamette Valley, and Implications for Goose Management Author: Warren, Kelly Year: 2010 This thesis considers the question of whether climate change is affecting the migration patterns of geese in the Pacific Flyway, specifically cackling geese (Branta hutchinsii minima) and Pacific white-fronted geese (Anser albifrons frontalis). Ancillary questions that are considered are as follows: • If global warming is affecting these species, what is the nature of the effects? • How are the changes affecting the human environment and what can be done about these effects? In 1994, the majority of the cackler population in the Pacific Flyway began to winter in Oregon’s Willamette Valley rather than in their historical wintering areas in California’s Central Valley. In recent years, the Pacific white-fronted goose has shown a change in behavior similar to that of cacklers just before their major shift. The reasons for this shift have not been clear, though climate change, agricultural shifts, or competition with other species were thought to be possible causes. Analyses of historical breeding and wintering surveys, bird band data, harvest data, agricultural data, and climate and weather data were undertaken in the course of this thesis to see if the cause or causes could be identified. The results showed that climate and weather data, i.e. an increase in average annual temperature coupled with occasional severe winters, most closely correlated with the cacklers’ shift northward. The data comparison revealed that there is a direct relationship between cacklers and a warming shift seen on the wintering grounds. There also was a secondary correlation between the northward shift and recent changes in agricultural crops in the Willamette Valley. Substantially less data are available for white-fronts, and the relationship between their recent migration changes and climate and/or other factors is much less clear. The following recommendations for management and further study are aimed at more completely understanding the scope and causes of migration shifts and formulating well-founded management plans for geese in the Pacific Flyway: • Continue research to determine if climate change is causing changes in goose population numbers and behavior. • Expand breeding ground flight surveys to include cacklers and habitat preference to learn how habitat change on the Y-K Delta is altering cackler behavior and breeding success. • Expand radio transmitter studies and collar programs for cacklers in Oregon and Washington to verify northerly wintering shifts. • Expand collar programs for cacklers wintering in the Willamette Valley to determine if the population is continuing to shift northward. • Expand banding programs for white-fronted geese to gather more data about migration patterns. • Develop models that will allow researchers and managers to correlate migration behavior with various environmental factors including climate change in order to: 1) determine which factors are causing migration changes in specific waterfowl populations and 2) allow managers to make changes to management plans in advance of rapid changes. • Inform the public about how it can assist in collar surveys or volunteer for the U.S. Fish and Wildlife Service (USFWS). This will enable USFWS to have more concrete data and give the public an opportunity gain a greater understanding of geese and goose management. • Expand research on urban cackling geese to determine the nature and scope of their effect on the human environment and to devise management strategies. • Research energetics in migrating geese to determine whether the shift in migration patterns has its basis in climate change. • Increase data exchange and coordination among agencies. • Formulate and implement plans at the city and county levels to manage growing numbers of geese in urban areas. • Recognize and anticipate the possibility that goose populations may move into new wintering areas and formulate plans for management of those species. • Implement low cost techniques, such as more liberal bag limits and seasons, hazing, etc., to assist agricultural landowners in decreasing goose-related crop damage. Close

• 20. [Article] Studies of ecological factors that affect the population and distribution of the western gray squirrel in northcentral Oregon

  The western gray squirrel (Sciurus griseus griseus Ord) occur only in the Pacific states and in a small corner of extreme western Nevada. Field studies of aspects of the ecology of the most widely distributed ...

  Citation × Citation Citation Abstract Copy Title: Studies of ecological factors that affect the population and distribution of the western gray squirrel in northcentral Oregon Author: Foster, Susan Ann Year: 1992 The western gray squirrel (Sciurus griseus griseus Ord) occur only in the Pacific states and in a small corner of extreme western Nevada. Field studies of aspects of the ecology of the most widely distributed subspecies of western gray squirrel (S. griseus) were conducted at three sites in the ponderosa pine-Oregon white oak zone on the eastern slopes of Mt. Hood, Wasco County, Oregon, between 1981 and 1989. From 1981 through 1987, a Hunter Cooperation Program provided remains of squirrels shot during the annual late summer-early autumn hunting season. Other data were gathered through capture and release studies, radiotelemetry, and habitat analysis. The age structure of these populations, as revealed by examination of squirrels killed by hunters, is predominantly mature animals. Also, the population as estimated by hunter success during the Hunter Cooperation Program and by field observations appears to be declining. In the sites studied, western gray squirrels have two seasons of reproductive activity annually. Some individuals mate from January through March; their young emerge from the nest in May and June. Other individuals mate during May and June; their young emerge in August and September. The latter matings are usually the most productive. Analysis of nest trees and their surroundings revealed that nests are most likely to be located in mature trees that have well-developed crowns and occur in stands with a high degree of canopy closure. Nest trees were usually located within approximately 180 meters of permanent water and on sites with a south-southeasterly exposure. Home ranges of squirrels examined in this study were usually large compared to home ranges reported for this species elsewhere in its range. Given the cost of having large home ranges, it seems possible that the squirrels at these study sites exist in less than optimal ecological circumstances. Human factors that may have contributed to the decline of the populations in this study may include the nature of logging activities and the timing of the annual hunting season. Limiting factors other than human activities may include competition with other mast-consuming animals (mule deer, elk, wild turkeys, and three other species of squirrels) for limited and variable mast crops. Title: Studies of ecological factors that affect the population and distribution of the western gray squirrel in northcentral Oregon Author: Foster, Susan Ann Year: 1992 The western gray squirrel (Sciurus griseus griseus Ord) occur only in the Pacific states and in a small corner of extreme western Nevada. Field studies of aspects of the ecology of the most widely distributed subspecies of western gray squirrel (S. griseus) were conducted at three sites in the ponderosa pine-Oregon white oak zone on the eastern slopes of Mt. Hood, Wasco County, Oregon, between 1981 and 1989. From 1981 through 1987, a Hunter Cooperation Program provided remains of squirrels shot during the annual late summer-early autumn hunting season. Other data were gathered through capture and release studies, radiotelemetry, and habitat analysis. The age structure of these populations, as revealed by examination of squirrels killed by hunters, is predominantly mature animals. Also, the population as estimated by hunter success during the Hunter Cooperation Program and by field observations appears to be declining. In the sites studied, western gray squirrels have two seasons of reproductive activity annually. Some individuals mate from January through March; their young emerge from the nest in May and June. Other individuals mate during May and June; their young emerge in August and September. The latter matings are usually the most productive. Analysis of nest trees and their surroundings revealed that nests are most likely to be located in mature trees that have well-developed crowns and occur in stands with a high degree of canopy closure. Nest trees were usually located within approximately 180 meters of permanent water and on sites with a south-southeasterly exposure. Home ranges of squirrels examined in this study were usually large compared to home ranges reported for this species elsewhere in its range. Given the cost of having large home ranges, it seems possible that the squirrels at these study sites exist in less than optimal ecological circumstances. Human factors that may have contributed to the decline of the populations in this study may include the nature of logging activities and the timing of the annual hunting season. Limiting factors other than human activities may include competition with other mast-consuming animals (mule deer, elk, wild turkeys, and three other species of squirrels) for limited and variable mast crops. Close

• 21. [Article] Bending the Carbon Curve: Fire Management for Carbon Resilience under Climate Change

  Context: Forest landscapes are increasingly managed for fire resilience, particularly in the western US which has recently experienced drought and widespread, high-severity wildfires. Fuel reduction treatments ...

  Citation × Citation Citation Abstract Copy Title: Bending the Carbon Curve: Fire Management for Carbon Resilience under Climate Change Author: Loudermilk, E. Louise, Scheller, Robert M., Weisberg, Peter J., Kretchun, Alec M. Year: 2017 Context: Forest landscapes are increasingly managed for fire resilience, particularly in the western US which has recently experienced drought and widespread, high-severity wildfires. Fuel reduction treatments have been effective where fires coincide with treated areas. Fuel treatments also have the potential to reduce drought-mortality if tree density is uncharacteristically high, and to increase long-term carbon storage by reducing high-severity fire probability. Objective: Assess whether fuel treatments reduce fire intensity and spread and increase carbon storage under climate change. Methods: We used a simulation modeling approach that couples a landscape model of forest disturbance and succession with an ecosystem model of carbon dynamics (Century), to quantify the interacting effects of climate change, fuel treatments and wildfire for carbon storage potential in a mixed-conifer forest in the western USA. Results: Our results suggest that fuel treatments have the potential to ‘bend the C curve’, maintaining carbon resilience despite climate change and climate-related changes to the fire regime. Simulated fuel treatments resulted in reduced fire spread and severity. There was partial compensation of C lost during fuel treatments with increased growth of residual stock due to greater available soil water, as well as a shift in species composition to more drought- and fire-tolerant Pinus jeffreyi at the expense of shade-tolerant, fire-susceptible Abies concolor. Conclusions: Forest resilience to global change can be achieved through management that reduces drought stress and supports the establishment and dominance of tree species that are more fire- and drought-resistant, however, achieving a net C gain from fuel treatments may take decades. Title: Bending the Carbon Curve: Fire Management for Carbon Resilience under Climate Change Author: Loudermilk, E. Louise, Scheller, Robert M., Weisberg, Peter J., Kretchun, Alec M. Year: 2017 Context: Forest landscapes are increasingly managed for fire resilience, particularly in the western US which has recently experienced drought and widespread, high-severity wildfires. Fuel reduction treatments have been effective where fires coincide with treated areas. Fuel treatments also have the potential to reduce drought-mortality if tree density is uncharacteristically high, and to increase long-term carbon storage by reducing high-severity fire probability. Objective: Assess whether fuel treatments reduce fire intensity and spread and increase carbon storage under climate change. Methods: We used a simulation modeling approach that couples a landscape model of forest disturbance and succession with an ecosystem model of carbon dynamics (Century), to quantify the interacting effects of climate change, fuel treatments and wildfire for carbon storage potential in a mixed-conifer forest in the western USA. Results: Our results suggest that fuel treatments have the potential to ‘bend the C curve’, maintaining carbon resilience despite climate change and climate-related changes to the fire regime. Simulated fuel treatments resulted in reduced fire spread and severity. There was partial compensation of C lost during fuel treatments with increased growth of residual stock due to greater available soil water, as well as a shift in species composition to more drought- and fire-tolerant Pinus jeffreyi at the expense of shade-tolerant, fire-susceptible Abies concolor. Conclusions: Forest resilience to global change can be achieved through management that reduces drought stress and supports the establishment and dominance of tree species that are more fire- and drought-resistant, however, achieving a net C gain from fuel treatments may take decades. Close

• 22. [Article] Quantifying Resilience of Multiple Ecosystem Services and Biodiversity in a Temperate Forest Landscape

  Resilience is increasingly being considered as a new paradigm of forest management among scientists, practitioners, and policymakers. However, metrics of resilience to environmental change are lacking. ...

  Citation × Citation Citation Abstract Copy Title: Quantifying Resilience of Multiple Ecosystem Services and Biodiversity in a Temperate Forest Landscape Author: Cantarello, Elena, Newton, Adrian C., Martin, Phillip A., Evans, Paul M., Gosal, Arjan, Lucash, Melissa S. Year: 2017 Resilience is increasingly being considered as a new paradigm of forest management among scientists, practitioners, and policymakers. However, metrics of resilience to environmental change are lacking. Faced with novel disturbances, forests may be able to sustain existing ecosystem services and biodiversity by exhibiting resilience, or alternatively these attributes may undergo either a linear or nonlinear decline. Here we provide a novel quantitative approach for assessing forest resilience that focuses on three components of resilience, namely resistance, recovery, and net change, using a spatially explicit model of forest dynamics. Under the pulse set scenarios, we explored the resilience of nine ecosystem services and four biodiversity measures following a one-off disturbance applied to an increasing percentage of forest area. Under the pulse + press set scenarios, the six disturbance intensities explored during the pulse set were followed by a continuous disturbance. We detected thresholds in net change under pulse + press scenarios for the majority of the ecosystem services and biodiversity measures, which started to decline sharply when disturbance affected >40% of the landscape. Thresholds in net change were not observed under the pulse scenarios, with the exception of timber volume and ground flora species richness. Thresholds were most pronounced for aboveground biomass, timber volume with respect to the ecosystem services, and ectomycorrhizal fungi and ground flora species richness with respect to the biodiversity measures. Synthesis and applications. The approach presented here illustrates how the multidimensionality of stability research in ecology can be addressed and how forest resilience can be estimated in practice. Managers should adopt specific management actions to support each of the three components of resilience separately, as these may respond differently to disturbance. In addition, management interventions aiming to deliver resilience should incorporate an assessment of both pulse and press disturbances to ensure detection of threshold responses to disturbance, so that appropriate management interventions can be identified. Title: Quantifying Resilience of Multiple Ecosystem Services and Biodiversity in a Temperate Forest Landscape Author: Cantarello, Elena, Newton, Adrian C., Martin, Phillip A., Evans, Paul M., Gosal, Arjan, Lucash, Melissa S. Year: 2017 Resilience is increasingly being considered as a new paradigm of forest management among scientists, practitioners, and policymakers. However, metrics of resilience to environmental change are lacking. Faced with novel disturbances, forests may be able to sustain existing ecosystem services and biodiversity by exhibiting resilience, or alternatively these attributes may undergo either a linear or nonlinear decline. Here we provide a novel quantitative approach for assessing forest resilience that focuses on three components of resilience, namely resistance, recovery, and net change, using a spatially explicit model of forest dynamics. Under the pulse set scenarios, we explored the resilience of nine ecosystem services and four biodiversity measures following a one-off disturbance applied to an increasing percentage of forest area. Under the pulse + press set scenarios, the six disturbance intensities explored during the pulse set were followed by a continuous disturbance. We detected thresholds in net change under pulse + press scenarios for the majority of the ecosystem services and biodiversity measures, which started to decline sharply when disturbance affected >40% of the landscape. Thresholds in net change were not observed under the pulse scenarios, with the exception of timber volume and ground flora species richness. Thresholds were most pronounced for aboveground biomass, timber volume with respect to the ecosystem services, and ectomycorrhizal fungi and ground flora species richness with respect to the biodiversity measures. Synthesis and applications. The approach presented here illustrates how the multidimensionality of stability research in ecology can be addressed and how forest resilience can be estimated in practice. Managers should adopt specific management actions to support each of the three components of resilience separately, as these may respond differently to disturbance. In addition, management interventions aiming to deliver resilience should incorporate an assessment of both pulse and press disturbances to ensure detection of threshold responses to disturbance, so that appropriate management interventions can be identified. Close

• 23. [Article] Final Report: Evaluation of the Morphoedaphic Index and Sediment Diatoms for Inference of Pre-European Settlement Total Phosphorus Concentration in EPA Region 10 Lakes

  Water quality in many Northwest lakes has declined over the past century due, in part, to increased anthropogenic nutrient loading (Edmonson and Lehman, 1981). Under the Clean Water Act, resource managers ...

  Citation × Citation Citation Abstract Copy Title: Final Report: Evaluation of the Morphoedaphic Index and Sediment Diatoms for Inference of Pre-European Settlement Total Phosphorus Concentration in EPA Region 10 Lakes Author: Miller, Rich, Hook, Aaron, Petersen, Richard, Sytsma, Mark D. Year: 2005 Water quality in many Northwest lakes has declined over the past century due, in part, to increased anthropogenic nutrient loading (Edmonson and Lehman, 1981). Under the Clean Water Act, resource managers such as the Washington Department of Ecology, Oregon Department of Environmental Quality, and tribes are responsible for restoring and protecting the integrity of these waters. Targets for restoration or criteria for impairment are not well defined, however, and may naturally vary by geology, hydrology, morphometry, and climate. One way to determine whether lakes are impaired and to identify restoration targets is to assess lake reference conditions (EPA 2000). Reference conditions are the water quality conditions that would exist in the absence of anthropogenic perturbation. Reference conditions are not nutrient criteria but can be useful in establishing realistic criteria that reflect natural regional variations in water quality. The EPA suggests three general approaches for assessing reference conditions (EPA 2000): Observation of reference lake or entire lake population distributions Paleolimnological reconstruction of past conditions. Estimation of past conditions from mass balance nutrient loading models, morphoedaphic index models, or other mathematical models. The lake population distribution approach involves observing data from either a set of lakes that are relatively unimpacted or from a random selection of all lakes in a region. The lower percentile of each population distribution is assumed to represent reference conditions. The lower 75th percentile of the relatively unimpacted population distribution has been used as a cutoff for reference conditions while the 25th percentile has been used for the lake population distribution as a whole. The Washington Department of Ecology has used this approach to develop phosphorus criteria (Moore and Hicks 2004). This approach assumes that the percentiles in a distribution represent reference conditions. Paleolimnological models are based on the observation that sediments continually incorporate information from the overlying water column and that sediment cores provide a history of past conditions. Sedimented diatom-based water quality reconstructions are based on two main observations (Hall and Smol 1992): (1) individual diatom species have restricted nutrient requirements and are sensitive indicators of lake trophic status, and (2) the cell walls of diatoms are abundant and well preserved in most lake sediments and can usually be identified to a specific or subspecific level. Weighted-averaging and calibration statistical models have been used to relate sediment surface diatom assemblages to contemporary water quality parameters. These speciesenvironment relationships, known as transfer functions, can then be used to infer past water quality conditions from diatom remains preserved deep in sediments. This approach has been successfully applied in several geographic regions including the northeastern United States (Dixit et al. 1999), Minnesota (Ramstack et al. 2003), and British Columbia (Reavie et al. 1995). The morphoedaphic index (MEI) was originally developed to predict fisheries yield in lakes based on lake morphometry and alkalinity or conductivity (Ryder 1965). Vighi and Chiaudani (1985) suggested the utility of the index for inferring natural background phosphorus levels in lakes. Their major assumption was that human activities have not altered lake morphometry and ionic strength to the degree that the same activities have increased nutrient loading. While the model is simple, it has been successfully used in to infer background phosphorus concentration in Midwest lakes (Ramstack et al. 2003). We used the MEI and the sedimented diatom total phosphorus inference models to assess lake reference conditions for Puget Lowlands and Northern Willamette Valley Ecoregion Lakes. Title: Final Report: Evaluation of the Morphoedaphic Index and Sediment Diatoms for Inference of Pre-European Settlement Total Phosphorus Concentration in EPA Region 10 Lakes Author: Miller, Rich, Hook, Aaron, Petersen, Richard, Sytsma, Mark D. Year: 2005 Water quality in many Northwest lakes has declined over the past century due, in part, to increased anthropogenic nutrient loading (Edmonson and Lehman, 1981). Under the Clean Water Act, resource managers such as the Washington Department of Ecology, Oregon Department of Environmental Quality, and tribes are responsible for restoring and protecting the integrity of these waters. Targets for restoration or criteria for impairment are not well defined, however, and may naturally vary by geology, hydrology, morphometry, and climate. One way to determine whether lakes are impaired and to identify restoration targets is to assess lake reference conditions (EPA 2000). Reference conditions are the water quality conditions that would exist in the absence of anthropogenic perturbation. Reference conditions are not nutrient criteria but can be useful in establishing realistic criteria that reflect natural regional variations in water quality. The EPA suggests three general approaches for assessing reference conditions (EPA 2000): Observation of reference lake or entire lake population distributions Paleolimnological reconstruction of past conditions. Estimation of past conditions from mass balance nutrient loading models, morphoedaphic index models, or other mathematical models. The lake population distribution approach involves observing data from either a set of lakes that are relatively unimpacted or from a random selection of all lakes in a region. The lower percentile of each population distribution is assumed to represent reference conditions. The lower 75th percentile of the relatively unimpacted population distribution has been used as a cutoff for reference conditions while the 25th percentile has been used for the lake population distribution as a whole. The Washington Department of Ecology has used this approach to develop phosphorus criteria (Moore and Hicks 2004). This approach assumes that the percentiles in a distribution represent reference conditions. Paleolimnological models are based on the observation that sediments continually incorporate information from the overlying water column and that sediment cores provide a history of past conditions. Sedimented diatom-based water quality reconstructions are based on two main observations (Hall and Smol 1992): (1) individual diatom species have restricted nutrient requirements and are sensitive indicators of lake trophic status, and (2) the cell walls of diatoms are abundant and well preserved in most lake sediments and can usually be identified to a specific or subspecific level. Weighted-averaging and calibration statistical models have been used to relate sediment surface diatom assemblages to contemporary water quality parameters. These speciesenvironment relationships, known as transfer functions, can then be used to infer past water quality conditions from diatom remains preserved deep in sediments. This approach has been successfully applied in several geographic regions including the northeastern United States (Dixit et al. 1999), Minnesota (Ramstack et al. 2003), and British Columbia (Reavie et al. 1995). The morphoedaphic index (MEI) was originally developed to predict fisheries yield in lakes based on lake morphometry and alkalinity or conductivity (Ryder 1965). Vighi and Chiaudani (1985) suggested the utility of the index for inferring natural background phosphorus levels in lakes. Their major assumption was that human activities have not altered lake morphometry and ionic strength to the degree that the same activities have increased nutrient loading. While the model is simple, it has been successfully used in to infer background phosphorus concentration in Midwest lakes (Ramstack et al. 2003). We used the MEI and the sedimented diatom total phosphorus inference models to assess lake reference conditions for Puget Lowlands and Northern Willamette Valley Ecoregion Lakes. Close

• 24. [Article] Understanding the Links Between Cyanobacteria Physiology and Hydrodynamics may Help Find Adaption Strategies for Toxic Blooms

  Even though we are managing lakes to decrease algal blooms overall, harmful algal blooms seem to be showing up more and more frequently. Although the word “blooms” connotes dominance and rapid growth, ...

  Citation × Citation Citation Abstract Copy Title: Understanding the Links Between Cyanobacteria Physiology and Hydrodynamics may Help Find Adaption Strategies for Toxic Blooms Author: Rueter, John Year: 2016 Even though we are managing lakes to decrease algal blooms overall, harmful algal blooms seem to be showing up more and more frequently. Although the word “blooms” connotes dominance and rapid growth, dangerous accumulations of cyanobacteria can occur because of combinations of physiological advantages and particular weather and hydrodynamic conditions. I am particularly interested in specific conditions that might favor Aphanizomenon versus those that might favor Microcystis in Upper Klamath and Agency Lakes. Aphanizomenon is a nuisance and large blooms can lead to oxygen depletion and fish deaths. Microcystis can both be a nuisance and is toxic. The comparison of the physiologies of these two cyanobacterial strains could lead to an understanding of both short term adaptation and mitigation tactics as well as long term lake restoration strategies. Ideally, we would like to employ lake restoration strategies and see constant improvement leading to safer and cleaner water. However, either because of threshold effects or ineffective lake management approaches, we might have to take short-term manipulations that can reduce local accumulations of cyanobacteria to protect the health of humans and other species. These short term tactics must have three characteristics: First, we need to find mitigation techniques that might knock down or stall a bloom of algae from occurring. Second, we have to have ways to model and monitor these manipulations over relevant time and space scales. Third, any short-term techniques we employ should not substantial interfere with the long term goals of lake restoration, i.e. the quick fix shouldn’t undermine the solving the problem. I will present several potential short-term solutions based algal physiology and hydrodynamics. Then I will describe how we have used temperature datalogging (10 minute intervals) and high-resolution transects (1 meter spatial resolution) to understand impacts on accumulation processes. Then finally, I will describe a framework for supporting fast and cheap methods to adapt to cyanobacteria accumulations that don’t result in unintended consequences or interfere with lake restoration efforts. Title: Understanding the Links Between Cyanobacteria Physiology and Hydrodynamics may Help Find Adaption Strategies for Toxic Blooms Author: Rueter, John Year: 2016 Even though we are managing lakes to decrease algal blooms overall, harmful algal blooms seem to be showing up more and more frequently. Although the word “blooms” connotes dominance and rapid growth, dangerous accumulations of cyanobacteria can occur because of combinations of physiological advantages and particular weather and hydrodynamic conditions. I am particularly interested in specific conditions that might favor Aphanizomenon versus those that might favor Microcystis in Upper Klamath and Agency Lakes. Aphanizomenon is a nuisance and large blooms can lead to oxygen depletion and fish deaths. Microcystis can both be a nuisance and is toxic. The comparison of the physiologies of these two cyanobacterial strains could lead to an understanding of both short term adaptation and mitigation tactics as well as long term lake restoration strategies. Ideally, we would like to employ lake restoration strategies and see constant improvement leading to safer and cleaner water. However, either because of threshold effects or ineffective lake management approaches, we might have to take short-term manipulations that can reduce local accumulations of cyanobacteria to protect the health of humans and other species. These short term tactics must have three characteristics: First, we need to find mitigation techniques that might knock down or stall a bloom of algae from occurring. Second, we have to have ways to model and monitor these manipulations over relevant time and space scales. Third, any short-term techniques we employ should not substantial interfere with the long term goals of lake restoration, i.e. the quick fix shouldn’t undermine the solving the problem. I will present several potential short-term solutions based algal physiology and hydrodynamics. Then I will describe how we have used temperature datalogging (10 minute intervals) and high-resolution transects (1 meter spatial resolution) to understand impacts on accumulation processes. Then finally, I will describe a framework for supporting fast and cheap methods to adapt to cyanobacteria accumulations that don’t result in unintended consequences or interfere with lake restoration efforts. Close