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• 61. [Article] Increased Harbor Porpoise Mortality in the Pacific Northwest, USA: Understanding When Higher Levels May be Normal

  In 2006, a marked increase in harbor porpoise Phocoena phocoena strandings were reported in the Pacific Northwest of the USA, resulting in the declaration of an unusual mortality event (UME) for Washington ...

  Citation × Citation Citation Abstract Copy Title: Increased Harbor Porpoise Mortality in the Pacific Northwest, USA: Understanding When Higher Levels May be Normal Author: Higgins, Jessica L., Raverty, Stephen A., Norman, Stephanie A., Calambokidis, John, Gaydos, Joseph K., Duffield, Deborah A., Lambourn, Dyanna M., Rice, James M., Hanson, Brad, Wilkinson, Kristin, Jeffries, Steven J., Norberg, Brent, Barre, Lynne Year: 2015 In 2006, a marked increase in harbor porpoise Phocoena phocoena strandings were reported in the Pacific Northwest of the USA, resulting in the declaration of an unusual mortality event (UME) for Washington and Oregon to facilitate investigation into potential causes. The UME was in place during all of 2006 and 2007, and a total of 114 porpoises stranded during this period. Responders examined 95 porpoises; of these, detailed necropsies were conducted on 75 animals. Here we review the findings related to this event and how these compared to the years immediately before and after the UME. Relatively equal numbers among sexes and age classes were represented, and mortalities were attributed to a variety of specific causes, most of which were categorized as trauma or infectious disease. Continued monitoring of strandings during 4 yr following the UME showed no decrease in occurrence. The lack of a single major cause of mortality or evidence of a significant change or event, combined with high levels of strandings over several post- UME years, demonstrated that this was not an actual mortality event but was likely the result of a combination of factors, including: (1) a growing population of harbor porpoises; (2) expansion of harbor porpoises into previously sparsely populated areas in Washington’s inland waters; and (3) a more well established stranding network that resulted in better reporting and response. This finding would not have been possible without the integrated response and investigation undertaken by the stranding network. Title: Increased Harbor Porpoise Mortality in the Pacific Northwest, USA: Understanding When Higher Levels May be Normal Author: Higgins, Jessica L., Raverty, Stephen A., Norman, Stephanie A., Calambokidis, John, Gaydos, Joseph K., Duffield, Deborah A., Lambourn, Dyanna M., Rice, James M., Hanson, Brad, Wilkinson, Kristin, Jeffries, Steven J., Norberg, Brent, Barre, Lynne Year: 2015 In 2006, a marked increase in harbor porpoise Phocoena phocoena strandings were reported in the Pacific Northwest of the USA, resulting in the declaration of an unusual mortality event (UME) for Washington and Oregon to facilitate investigation into potential causes. The UME was in place during all of 2006 and 2007, and a total of 114 porpoises stranded during this period. Responders examined 95 porpoises; of these, detailed necropsies were conducted on 75 animals. Here we review the findings related to this event and how these compared to the years immediately before and after the UME. Relatively equal numbers among sexes and age classes were represented, and mortalities were attributed to a variety of specific causes, most of which were categorized as trauma or infectious disease. Continued monitoring of strandings during 4 yr following the UME showed no decrease in occurrence. The lack of a single major cause of mortality or evidence of a significant change or event, combined with high levels of strandings over several post- UME years, demonstrated that this was not an actual mortality event but was likely the result of a combination of factors, including: (1) a growing population of harbor porpoises; (2) expansion of harbor porpoises into previously sparsely populated areas in Washington’s inland waters; and (3) a more well established stranding network that resulted in better reporting and response. This finding would not have been possible without the integrated response and investigation undertaken by the stranding network. Close

• 62. [Article] Rare, Threatened and Endangered Species of Oregon

  Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within ...

  Citation × Citation Citation Abstract Copy Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, McArthur, Fern, Walsh, Kuuipo, Scheuering, Eric, Christy, John A., Hak, Jon, Tobalske, Claudine, Weiland, Annie, Koloszar, Theresa, Oregon Natural Heritage Information Center Year: 2004 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is large-scale destruction of native habitats, which has increased since European settlement began in the mid 1800's - in Oregon and throughout the New World. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, McArthur, Fern, Walsh, Kuuipo, Scheuering, Eric, Christy, John A., Hak, Jon, Tobalske, Claudine, Weiland, Annie, Koloszar, Theresa, Oregon Natural Heritage Information Center Year: 2004 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is large-scale destruction of native habitats, which has increased since European settlement began in the mid 1800's - in Oregon and throughout the New World. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Close

• 63. [Article] Rare, Threatened and Endangered Species of Oregon

  Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within ...

  Citation × Citation Citation Abstract Copy Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, Koepke, Lindsey, Christy, John A., Doyle, Erin Year: 2010 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is human caused changes to the environment, which continue to increase - in Oregon and throughout the world. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, Koepke, Lindsey, Christy, John A., Doyle, Erin Year: 2010 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is human caused changes to the environment, which continue to increase - in Oregon and throughout the world. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Close

• 64. [Article] Ecological Homogenization of Urban USA

  A visually apparent but scientifically untested outcome of land-use change is homogenization across urban areas, where neighborhoods in different parts of the country have similar patterns of roads, residential ...

  Citation × Citation Citation Abstract Copy Title: Ecological Homogenization of Urban USA Author: Groffman, Peter M., Cavender-Bares, Jeannine, Bettez, Neil D., Grove, J. Morgan, Hall, Sharon J., Heffernan, James B., Hobbie, Sarah E., Larson, Kelli L., Morse, Jennifer L., Neill, Christopher, Nelson, Kristen C., O'Neil-Dunne, Jarlath, Pataki, Diane E., Polsky, Colin, Chowdhury, Rinku Roy, Steele, Meredith K. Year: 2014 A visually apparent but scientifically untested outcome of land-use change is homogenization across urban areas, where neighborhoods in different parts of the country have similar patterns of roads, residential lots, commercial areas, and aquatic features. We hypothesize that this homogenization extends to ecological structure and also to ecosystem functions such as carbon dynamics and microclimate, with continental-scale implications. Further, we suggest that understanding urban homogenization will provide the basis for understanding the impacts of urban land-use change from local to continental scales. Here, we show how multi-scale, multi-disciplinary datasets from six metropolitan areas that cover the major climatic regions of the US (Phoenix, AZ; Miami, FL; Baltimore, MD; Boston, MA; Minneapolis–St Paul, MN; and Los Angeles, CA) can be used to determine how household and neighborhood characteristics correlate with land-management practices, land-cover composition, and landscape structure and ecosystem functions at local, regional, and continental scales. Title: Ecological Homogenization of Urban USA Author: Groffman, Peter M., Cavender-Bares, Jeannine, Bettez, Neil D., Grove, J. Morgan, Hall, Sharon J., Heffernan, James B., Hobbie, Sarah E., Larson, Kelli L., Morse, Jennifer L., Neill, Christopher, Nelson, Kristen C., O'Neil-Dunne, Jarlath, Pataki, Diane E., Polsky, Colin, Chowdhury, Rinku Roy, Steele, Meredith K. Year: 2014 A visually apparent but scientifically untested outcome of land-use change is homogenization across urban areas, where neighborhoods in different parts of the country have similar patterns of roads, residential lots, commercial areas, and aquatic features. We hypothesize that this homogenization extends to ecological structure and also to ecosystem functions such as carbon dynamics and microclimate, with continental-scale implications. Further, we suggest that understanding urban homogenization will provide the basis for understanding the impacts of urban land-use change from local to continental scales. Here, we show how multi-scale, multi-disciplinary datasets from six metropolitan areas that cover the major climatic regions of the US (Phoenix, AZ; Miami, FL; Baltimore, MD; Boston, MA; Minneapolis–St Paul, MN; and Los Angeles, CA) can be used to determine how household and neighborhood characteristics correlate with land-management practices, land-cover composition, and landscape structure and ecosystem functions at local, regional, and continental scales. Close

• 65. [Article] Rare, Threatened and Endangered Plants and Animals of Oregon

  Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within ...

  Citation × Citation Citation Abstract Copy Title: Rare, Threatened and Endangered Plants and Animals of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, Popper, Ken, Stern, Mark A., Scheuering, Eric, Christy, John A., Finnerty, Mary, Hak, Jon, Tovar, Anthony A., Murray, Michael, Tobalske, Claudine, Oregon Natural Heritage Program Year: 2001 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is large-scale destruction of native habitats, which has increased since European settlement began in the mid 1800's - in Oregon and throughout the New World. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this book is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Title: Rare, Threatened and Endangered Plants and Animals of Oregon Author: Kagan, James S., Vrilakas, Sue, Gaines, Eleanor P., Alton, Cliff, Popper, Ken, Stern, Mark A., Scheuering, Eric, Christy, John A., Finnerty, Mary, Hak, Jon, Tovar, Anthony A., Murray, Michael, Tobalske, Claudine, Oregon Natural Heritage Program Year: 2001 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is large-scale destruction of native habitats, which has increased since European settlement began in the mid 1800's - in Oregon and throughout the New World. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many invertebrates and plants contain undescribed and highly functional compounds. Limnanthes floccosa subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been recently found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this book is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Close

• 66. [Article] Rare, Threatened and Endangered Species of Oregon

  Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within ...

  Citation × Citation Citation Abstract Copy Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Christy, John A., Gaines, Eleanor P., Wise, Lindsey, Pahl, Cameron, Howell, Kathy Year: 2016 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major reasons for this are human caused changes to the environment, which continue to increase - in Oregon and throughout the world. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many insects and plants contain undescribed and highly functional compounds. Limnanthes pumila subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Title: Rare, Threatened and Endangered Species of Oregon Author: Kagan, James S., Vrilakas, Sue, Christy, John A., Gaines, Eleanor P., Wise, Lindsey, Pahl, Cameron, Howell, Kathy Year: 2016 Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major reasons for this are human caused changes to the environment, which continue to increase - in Oregon and throughout the world. Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% of all pharmaceuticals have a natural component as an active ingredient, yet less than one percent of the world's species have been chemically analyzed and tested. Many insects and plants contain undescribed and highly functional compounds. Limnanthes pumila subsp. grandiflora, or wooly meadow-foam, a rare plant that grows in southwest Oregon, has been found to produce a hybrid with the more common member of the genus, Limnanthes alba. This hybrid grows well in the poorly drained soils of the Willamette Valley and produces a valuable oil used for soaps, plastic and rubber production. In addition, the new hybrid meadow-foam does not require the field burning necessary for other crops. This species, and many other Oregon natives, will be lost without intervention. The purpose of this publication is to provide land managers, owners and interested parties with a list of those species in Oregon which are in greatest jeopardy. Close

• 67. [Article] Emerging semantics to link phenotype and environment

  This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/

  Citation × Citation Citation Abstract Copy Title: Emerging semantics to link phenotype and environment Author: Cooper, Laurel D., Buttigieg, Pier Luigi, Bunkers, Daniel E., et al., Thessen, Anne E., Jaiswal, Pankaj This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Title: Emerging semantics to link phenotype and environment Author: Cooper, Laurel D., Buttigieg, Pier Luigi, Bunkers, Daniel E., et al., Thessen, Anne E., Jaiswal, Pankaj This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by PeerJ. The published article can be found at: https://peerj.com/ Close

• 68. [Article] Is fire exclusion in mountain big sagebrush communities prudent? Soil nutrient, plant diversity and arthropod response to burning

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the International ...

  Citation × Citation Citation Abstract Copy Title: Is fire exclusion in mountain big sagebrush communities prudent? Soil nutrient, plant diversity and arthropod response to burning Author: Nafus, Aleta M., Boyd, Chad S., Bates, Jonathan D., Davies, Kirk W. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the International Association of Wildland Fire and published by CSIRO Publishing. It can be found at: http://www.publish.csiro.au/nid/114.htm. Title: Is fire exclusion in mountain big sagebrush communities prudent? Soil nutrient, plant diversity and arthropod response to burning Author: Nafus, Aleta M., Boyd, Chad S., Bates, Jonathan D., Davies, Kirk W. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the International Association of Wildland Fire and published by CSIRO Publishing. It can be found at: http://www.publish.csiro.au/nid/114.htm. Close

• 69. [Article] Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati

  To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the Zoological Society ...

  Citation × Citation Citation Abstract Copy Title: Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati Author: Brownell, R. L., Jr., Robins, J., Baker, C. Scott, Thompson, K., Stone, G. S., Hutt, A., Dalebout, M. L. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the Zoological Society of London and published by John Wiley & Sons Ltd. It can be found at: http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795. Title: Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati Author: Brownell, R. L., Jr., Robins, J., Baker, C. Scott, Thompson, K., Stone, G. S., Hutt, A., Dalebout, M. L. To the best of our knowledge, one or more authors of this paper were federal employees when contributing to this work. This is the publisher’s final pdf. The article is copyrighted by the Zoological Society of London and published by John Wiley & Sons Ltd. It can be found at: http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795. Close

• 70. [Article] A Phylogenetic Perspective on the Individual Species- Area Relationship in Temperate and Tropical Tree Communities

  This is the publisher’s final pdf. The published article is copyrighted by Public Library of Science and can be found at: http://www.plos.org/.

  Citation × Citation Citation Abstract Copy Title: A Phylogenetic Perspective on the Individual Species- Area Relationship in Temperate and Tropical Tree Communities Author: Kenfack, David, Howe, Robert, Cao, Min, Ewango, Corneille E. N., Chuyong, George B., Swenson, Nathan G., Lin, Luxiang, Yang, Jie, Thomas, Duncan, Wolf, Amy This is the publisher’s final pdf. The published article is copyrighted by Public Library of Science and can be found at: http://www.plos.org/. Title: A Phylogenetic Perspective on the Individual Species- Area Relationship in Temperate and Tropical Tree Communities Author: Kenfack, David, Howe, Robert, Cao, Min, Ewango, Corneille E. N., Chuyong, George B., Swenson, Nathan G., Lin, Luxiang, Yang, Jie, Thomas, Duncan, Wolf, Amy This is the publisher’s final pdf. The published article is copyrighted by Public Library of Science and can be found at: http://www.plos.org/. Close