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• 1. [Article] Behavioral Observation and Paternal Investment of Eastern Kingbirds at Malheur National Wildlife Refuge

  We have been studying the population of Eastern Kingbirds breeding in riparian habitats in Malheur National Wildlife Refuge (eastern Oregon) since 2002. These efforts have created an ideal research environment ...

  Citation × Citation Citation Abstract Copy Title: Behavioral Observation and Paternal Investment of Eastern Kingbirds at Malheur National Wildlife Refuge Author: Chutter, Christopher Michael Year: 2014 We have been studying the population of Eastern Kingbirds breeding in riparian habitats in Malheur National Wildlife Refuge (eastern Oregon) since 2002. These efforts have created an ideal research environment wherein most adults in the population have been color banded and DNA sampled and, as part of other research projects, nearly all broods since 2003 have been paternity tested. I decided to use behavioral video recordings of parental nest behavior undertaken between 2003 and 2010 for two unrelated projects. First, I tested the effectiveness of video sampling nesting behavior (see below and chapter 2). Second, I tested whether male kingbirds were able to affect their level of paternal investment in accordance with their level or realized paternity (see below and chapter 3). Chapter 2 was split into three distinct questions: 1) are parental nesting behaviors repeatable, 2) is a one hour sample sufficient to capture variability in these behaviors, and 3) is the first hour of recording sufficient to capture variability in these behaviors. I found overwhelming evidence that the behaviors I measured were repeatable. This is truly important, for if repeatability was disproven, it would call into question the use of sampling throughout the field of animal behavior. I similarly found strong evidence that a one hour sample was sufficient to capture variability in parental behaviors. From this I was able to suggest that further sampling effort would be better spent increasing sample size rather than observation length. Testing whether the first hour of recording was sufficient to capture variability in parental behavior found more muddled results. While there generally was correlation between behavioral values in the first hour and those over a longer observation period, most behaviors were found to have significantly lower values in the first hour. I tested whether this was the result of a lingering observer effect or a natural effect of time of day and concluded that an observer effect was the more likely explanation. In chapter 3, I ran one of the more in depth and complicated tests for a relationship between paternal investment and realized paternity that I was able to find in the literature. I used the standard male feeding rate as a measure of male investment as well as a far more nuanced measure derived from the first Eigenvector of an analysis of six different paternal behaviors. These were both tested using Akaike's Information Criterion against a number of variables likely to affect parental behavior, including realized paternity. Ultimately, I found no evidence that kingbirds were able to affect paternal investment in response to lost paternity, and conclude that they likely had no means to assess realized paternity within the nest of their social mate. However, from the other parameters tested I was able to find that males increased their investment as brood size increased and as the female spent more time attending, but not feeding, the nestlings. Also, male investment decreased as territory density increased and flight feather length increased. Theory surrounding the variability of extrapair paternity in birds can be used to account for these results. In a denser population males are predicted to reduce paternal effort for one of two reasons: increased likelihood of paternity loss in his own nest and an increased investment in pursuing extrapair copulations of his own. Longer flight feathers are a sign of age and quality in kingbirds, so males with this trait are expected to spend more time pursuing extrapair copulations as they are more likely to be successful in this endeavor. Title: Behavioral Observation and Paternal Investment of Eastern Kingbirds at Malheur National Wildlife Refuge Author: Chutter, Christopher Michael Year: 2014 We have been studying the population of Eastern Kingbirds breeding in riparian habitats in Malheur National Wildlife Refuge (eastern Oregon) since 2002. These efforts have created an ideal research environment wherein most adults in the population have been color banded and DNA sampled and, as part of other research projects, nearly all broods since 2003 have been paternity tested. I decided to use behavioral video recordings of parental nest behavior undertaken between 2003 and 2010 for two unrelated projects. First, I tested the effectiveness of video sampling nesting behavior (see below and chapter 2). Second, I tested whether male kingbirds were able to affect their level of paternal investment in accordance with their level or realized paternity (see below and chapter 3). Chapter 2 was split into three distinct questions: 1) are parental nesting behaviors repeatable, 2) is a one hour sample sufficient to capture variability in these behaviors, and 3) is the first hour of recording sufficient to capture variability in these behaviors. I found overwhelming evidence that the behaviors I measured were repeatable. This is truly important, for if repeatability was disproven, it would call into question the use of sampling throughout the field of animal behavior. I similarly found strong evidence that a one hour sample was sufficient to capture variability in parental behaviors. From this I was able to suggest that further sampling effort would be better spent increasing sample size rather than observation length. Testing whether the first hour of recording was sufficient to capture variability in parental behavior found more muddled results. While there generally was correlation between behavioral values in the first hour and those over a longer observation period, most behaviors were found to have significantly lower values in the first hour. I tested whether this was the result of a lingering observer effect or a natural effect of time of day and concluded that an observer effect was the more likely explanation. In chapter 3, I ran one of the more in depth and complicated tests for a relationship between paternal investment and realized paternity that I was able to find in the literature. I used the standard male feeding rate as a measure of male investment as well as a far more nuanced measure derived from the first Eigenvector of an analysis of six different paternal behaviors. These were both tested using Akaike's Information Criterion against a number of variables likely to affect parental behavior, including realized paternity. Ultimately, I found no evidence that kingbirds were able to affect paternal investment in response to lost paternity, and conclude that they likely had no means to assess realized paternity within the nest of their social mate. However, from the other parameters tested I was able to find that males increased their investment as brood size increased and as the female spent more time attending, but not feeding, the nestlings. Also, male investment decreased as territory density increased and flight feather length increased. Theory surrounding the variability of extrapair paternity in birds can be used to account for these results. In a denser population males are predicted to reduce paternal effort for one of two reasons: increased likelihood of paternity loss in his own nest and an increased investment in pursuing extrapair copulations of his own. Longer flight feathers are a sign of age and quality in kingbirds, so males with this trait are expected to spend more time pursuing extrapair copulations as they are more likely to be successful in this endeavor. Close

• 2. [Article] The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion

  This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern ...

  Citation × Citation Citation Abstract Copy Title: The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion Author: Redmond, Lucas J. Year: 2015 This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern Oregon from 2003 to 2009. Kingbirds are long-distance migratory songbirds that breed across much of North America. This species is socially monogamous but, via frequent extra-pair copulations, is genetically polygamous. Kingbirds exhibit relatively high breeding site fidelity, often returning to the same tree to nest in subsequent years. Both members of a pair provide parental care, but there are often specific duties performed by both male and female kingbirds. For example, males typically perform much of the vigilant nest defense that this species is well known for and contribute, to an extent, to the feeding of nestlings. Females, on the other hand, are entirely responsible for incubating and brooding. Beginning in 2002, most adults within the population of kingbirds at Malheur had been banded with a unique combination of three colored plastic leg bands and an aluminum USFWS band. Also, as many nests were located in each year as possible, and any young that survived to fledging age were banded with a unique combination of leg bands. Considerable effort was then spent each year to locate as many banded individuals as possible, which allowed me to document adult and juvenile survival. Annual survival rates of adult male and female kingbirds in the population at Malheur did not differ and were relatively high at approximately 0.65. Juvenile survival rate was approximately 0.29, indicating that slightly less than one-third of nestlings survive the interval between fledging and their first potential breeding season. Resighting probability was high for both sexes, although higher for adult males (0.94) than for adult female (0.84). The latter finding is consistent with the higher site fidelity of males than of females. Resighting probabilities for juveniles were much lower at 0.68 and 0.40 for males and females, respectively. Again, this was expected because natal site fidelity is typically much lower than breeding site fidelity. Compared to most other reports, resighting probability and return rates of juvenile kingbirds was high, presumably because the riparian habitats where kingbirds breed at Malheur function as an ecological island surrounded by, for kingbirds, unsuitable high desert habitat. Thus, unless they disperse very long distances, the only option for juvenile kingbirds is to begin nesting on the refuge. The collection of blood samples from birds has become an increasingly common practice in ornithology. The data that can be gained from these samples allow a number of interesting questions to be asked such as understanding the genetic mating system of a species, patterns of hormone secretion, and discerning migratory pathways via stable isotope analysis. The volume of blood collected is usually small and was assumed to cause no long-term negative effects on sampled individuals. However, few studies have rigorously examined the effect of blood sampling on survival. I used a multistate mark-recapture analysis to assess the effect blood sampling on annual survival of kingbirds by combining the annual survival data described above with whether or not individuals were subjected to blood sample collection. The results of this analysis indicated that blood sampling had no effect on annual survival rates of kingbirds. Whether or not this is the case for other species remains to be seen. However, my results support the assumption that when done correctly, blood sampling has little to no long-term negative effects on birds. Comparative analyses of many bird species show that testosterone secretion exhibits fairly predictable patterns among breeding birds of different mating systems. Monogamous species reach a peak during mate attraction and the period of female fertility which is then followed by a sharp decline when young are in the nest. By contrast, males of polygynous species tend to maintain higher levels of testosterone throughout the breeding season to, presumably, maximize opportunities for acquiring additional mates. Kingbirds are socially monogamous but cryptically polygamous. However, because of high rates of extra-pair paternity, variation in reproductive success among males is much higher than what is expected for a monogamous species, and, instead, is similar to what has been reported for polygynous species. Therefore from 2005 to 2009 I measured testosterone concentrations from the blood samples collected from male kingbirds to determine the breeding season profile of testosterone secretion in kingbirds and to understand the factors that influence testosterone variation among individuals. Contrary to expected for a monogamous species, the testosterone profile of kingbirds did not exhibit the brief peak in testosterone followed by a precipitous decline. Testosterone peaked early in the season, but declined very slowly as the nest cycle progressed. I attributed this gradual decline in testosterone to the cryptically polygynous nature of the kingbird extra-pair mating system. I also found substantial variation in testosterone concentration among male kingbirds and was able to identify several factors contributing to this variation. As expected, testosterone declined as the breeding season progressed (independent of stage in nest cycle) and nest density increased, while increases in testosterone were correlated with the number of fertile females within the population. This suggests that male kingbirds were capable of modulating testosterone concentrations to both cope with an increase in conspecific density, but also to ready themselves for times when extra-pair copulations were more likely. Title: The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion Author: Redmond, Lucas J. Year: 2015 This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern Oregon from 2003 to 2009. Kingbirds are long-distance migratory songbirds that breed across much of North America. This species is socially monogamous but, via frequent extra-pair copulations, is genetically polygamous. Kingbirds exhibit relatively high breeding site fidelity, often returning to the same tree to nest in subsequent years. Both members of a pair provide parental care, but there are often specific duties performed by both male and female kingbirds. For example, males typically perform much of the vigilant nest defense that this species is well known for and contribute, to an extent, to the feeding of nestlings. Females, on the other hand, are entirely responsible for incubating and brooding. Beginning in 2002, most adults within the population of kingbirds at Malheur had been banded with a unique combination of three colored plastic leg bands and an aluminum USFWS band. Also, as many nests were located in each year as possible, and any young that survived to fledging age were banded with a unique combination of leg bands. Considerable effort was then spent each year to locate as many banded individuals as possible, which allowed me to document adult and juvenile survival. Annual survival rates of adult male and female kingbirds in the population at Malheur did not differ and were relatively high at approximately 0.65. Juvenile survival rate was approximately 0.29, indicating that slightly less than one-third of nestlings survive the interval between fledging and their first potential breeding season. Resighting probability was high for both sexes, although higher for adult males (0.94) than for adult female (0.84). The latter finding is consistent with the higher site fidelity of males than of females. Resighting probabilities for juveniles were much lower at 0.68 and 0.40 for males and females, respectively. Again, this was expected because natal site fidelity is typically much lower than breeding site fidelity. Compared to most other reports, resighting probability and return rates of juvenile kingbirds was high, presumably because the riparian habitats where kingbirds breed at Malheur function as an ecological island surrounded by, for kingbirds, unsuitable high desert habitat. Thus, unless they disperse very long distances, the only option for juvenile kingbirds is to begin nesting on the refuge. The collection of blood samples from birds has become an increasingly common practice in ornithology. The data that can be gained from these samples allow a number of interesting questions to be asked such as understanding the genetic mating system of a species, patterns of hormone secretion, and discerning migratory pathways via stable isotope analysis. The volume of blood collected is usually small and was assumed to cause no long-term negative effects on sampled individuals. However, few studies have rigorously examined the effect of blood sampling on survival. I used a multistate mark-recapture analysis to assess the effect blood sampling on annual survival of kingbirds by combining the annual survival data described above with whether or not individuals were subjected to blood sample collection. The results of this analysis indicated that blood sampling had no effect on annual survival rates of kingbirds. Whether or not this is the case for other species remains to be seen. However, my results support the assumption that when done correctly, blood sampling has little to no long-term negative effects on birds. Comparative analyses of many bird species show that testosterone secretion exhibits fairly predictable patterns among breeding birds of different mating systems. Monogamous species reach a peak during mate attraction and the period of female fertility which is then followed by a sharp decline when young are in the nest. By contrast, males of polygynous species tend to maintain higher levels of testosterone throughout the breeding season to, presumably, maximize opportunities for acquiring additional mates. Kingbirds are socially monogamous but cryptically polygamous. However, because of high rates of extra-pair paternity, variation in reproductive success among males is much higher than what is expected for a monogamous species, and, instead, is similar to what has been reported for polygynous species. Therefore from 2005 to 2009 I measured testosterone concentrations from the blood samples collected from male kingbirds to determine the breeding season profile of testosterone secretion in kingbirds and to understand the factors that influence testosterone variation among individuals. Contrary to expected for a monogamous species, the testosterone profile of kingbirds did not exhibit the brief peak in testosterone followed by a precipitous decline. Testosterone peaked early in the season, but declined very slowly as the nest cycle progressed. I attributed this gradual decline in testosterone to the cryptically polygynous nature of the kingbird extra-pair mating system. I also found substantial variation in testosterone concentration among male kingbirds and was able to identify several factors contributing to this variation. As expected, testosterone declined as the breeding season progressed (independent of stage in nest cycle) and nest density increased, while increases in testosterone were correlated with the number of fertile females within the population. This suggests that male kingbirds were capable of modulating testosterone concentrations to both cope with an increase in conspecific density, but also to ready themselves for times when extra-pair copulations were more likely. Close

• 3. [Article] The Response of Zooplankton Communities in Montane Lakes of Different Fish Stocking Histories to Atmospheric Nitrogen Deposition Simulations

  Freshwater ecosystems are subject to a wide variety of stressors, which can have complex interactions and result in ecological surprises. Non-native fish introductions have drastically reduced the number ...

  Citation × Citation Citation Abstract Copy Title: The Response of Zooplankton Communities in Montane Lakes of Different Fish Stocking Histories to Atmospheric Nitrogen Deposition Simulations Author: Brittain, Jeffrey Thomas Year: 2015 Freshwater ecosystems are subject to a wide variety of stressors, which can have complex interactions and result in ecological surprises. Non-native fish introductions have drastically reduced the number of naturally fishless lakes and have resulted in cascading food web repercussions in aquatic and terrestrial habitats. Additional anthropogenic influences that result from increases in global airborne emissions also threaten wildlife habitat. Atmospheric nitrogen deposition has been recognized as an anthropogenic contributor to acidification and eutrophication of wilderness ecosystems. Planktonic communities have shown declines in response to predation and shifts in composition as a result of nutrient inputs and acidification, both of which are potential fates of nitrogen deposition. This study identified the response of zooplankton communities from two lakes (fish present vs. absent) in Mount Rainier National Park to manipulations simulating an episodic disturbance event in mesocosms. The experiment used a 2 x 2 factorial design with acid and nitrogen treatments. Treatments resulted in significantly elevated nitrogen and decreased pH conditions from control mesocosms over 42 days, indicating that the treatment effects were achieved. Results indicate that zooplankton communities from lakes with different food web structure respond differently to the singular effects of acid and nitrogen addition. Surprisingly, the interaction of the two stressors was related to increases in community metrics (e.g., abundance, biomass, body size, richness, and Shannon-Weiner diversity) for both lake types. This work can aid management decisions as agencies look to restore more aquatic montane habitats to their historic fishless states, and assess their abilities to recover and afford resistance to atmospheric pollution. Title: The Response of Zooplankton Communities in Montane Lakes of Different Fish Stocking Histories to Atmospheric Nitrogen Deposition Simulations Author: Brittain, Jeffrey Thomas Year: 2015 Freshwater ecosystems are subject to a wide variety of stressors, which can have complex interactions and result in ecological surprises. Non-native fish introductions have drastically reduced the number of naturally fishless lakes and have resulted in cascading food web repercussions in aquatic and terrestrial habitats. Additional anthropogenic influences that result from increases in global airborne emissions also threaten wildlife habitat. Atmospheric nitrogen deposition has been recognized as an anthropogenic contributor to acidification and eutrophication of wilderness ecosystems. Planktonic communities have shown declines in response to predation and shifts in composition as a result of nutrient inputs and acidification, both of which are potential fates of nitrogen deposition. This study identified the response of zooplankton communities from two lakes (fish present vs. absent) in Mount Rainier National Park to manipulations simulating an episodic disturbance event in mesocosms. The experiment used a 2 x 2 factorial design with acid and nitrogen treatments. Treatments resulted in significantly elevated nitrogen and decreased pH conditions from control mesocosms over 42 days, indicating that the treatment effects were achieved. Results indicate that zooplankton communities from lakes with different food web structure respond differently to the singular effects of acid and nitrogen addition. Surprisingly, the interaction of the two stressors was related to increases in community metrics (e.g., abundance, biomass, body size, richness, and Shannon-Weiner diversity) for both lake types. This work can aid management decisions as agencies look to restore more aquatic montane habitats to their historic fishless states, and assess their abilities to recover and afford resistance to atmospheric pollution. Close

• 4. [Article] Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA

  Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, ...

  Citation × Citation Citation Abstract Copy Title: Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA Author: Dinsmore, Stephen J., Lauten, David J., Castelein, Kathleen J., Gaines, Eleanor P., Stern, Mark A. Year: 2014 Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, USA, to Baja California, Mexico, and in disjunct interior sites. The Pacific coast population is federally listed as Threatened; habitat loss and nest loss to a suite of terrestrial and avian predators are thought to be primary factors limiting population growth in this species. In coastal Oregon, USA, a consortium of state and federal management agencies deployed nest exclosures on active Snowy Plover nests, initiated a lethal predator management program, and conducted local-scale habitat management in an effort to boost local productivity. During 1990–2009, we monitored 1,951 Snowy Plover nests at 9 sites with varying treatments. We examined the effectiveness of 3 types of nest exclosures (large, small, and outfitted with electric wire), predator removal, and habitat management on nest survival. Habitat management to remove invasive grasses and provide more suitable nesting substrate more than doubled nest survival. Predator management or use of any of the 3 types of exclosures also affected nest survival. There appeared to be no additional benefit to using both approaches, but the biological relevance of these findings is unclear because of site differences in treatments applied. Importantly, these management techniques only affected nesting success; their effect on other contributions to population viability (e.g., fledging success) was not correlated with nesting success. This long-term study illustrates the short-term benefits and tradeoffs of using nest exclosures, predator management, and habitat restoration to improve nesting success. Although we gained broader insight into the relative efficacy of common management techniques to improve avian nesting success, we cannot yet determine how improved nest success contributes to population growth. Title: Predator Exclosures, Predator Removal, and Habitat Improvement Increase Nest Success of Snowy Plovers in Oregon, USA Author: Dinsmore, Stephen J., Lauten, David J., Castelein, Kathleen J., Gaines, Eleanor P., Stern, Mark A. Year: 2014 Management to increase reproductive success is commonly used to aid recovery of threatened and endangered species. The Western Snowy Plover (Charadrius nivosus nivosus) breeds from coastal Washington, USA, to Baja California, Mexico, and in disjunct interior sites. The Pacific coast population is federally listed as Threatened; habitat loss and nest loss to a suite of terrestrial and avian predators are thought to be primary factors limiting population growth in this species. In coastal Oregon, USA, a consortium of state and federal management agencies deployed nest exclosures on active Snowy Plover nests, initiated a lethal predator management program, and conducted local-scale habitat management in an effort to boost local productivity. During 1990–2009, we monitored 1,951 Snowy Plover nests at 9 sites with varying treatments. We examined the effectiveness of 3 types of nest exclosures (large, small, and outfitted with electric wire), predator removal, and habitat management on nest survival. Habitat management to remove invasive grasses and provide more suitable nesting substrate more than doubled nest survival. Predator management or use of any of the 3 types of exclosures also affected nest survival. There appeared to be no additional benefit to using both approaches, but the biological relevance of these findings is unclear because of site differences in treatments applied. Importantly, these management techniques only affected nesting success; their effect on other contributions to population viability (e.g., fledging success) was not correlated with nesting success. This long-term study illustrates the short-term benefits and tradeoffs of using nest exclosures, predator management, and habitat restoration to improve nesting success. Although we gained broader insight into the relative efficacy of common management techniques to improve avian nesting success, we cannot yet determine how improved nest success contributes to population growth. Close

• 5. [Article] Hydrodynamic and Water Quality Modeling of the Chehalis River in Washington

  The Chehalis River Basin is located in the southwest region of Washington and is over 125 miles long flowing through agricultural, residential, industrial, and forest land. Four major rivers, many smaller ...

  Citation × Citation Citation Abstract Copy Title: Hydrodynamic and Water Quality Modeling of the Chehalis River in Washington Author: Van Glubt, Sarah, Wells, Scott A., Berger, Chris J. Year: 2017 The Chehalis River Basin is located in the southwest region of Washington and is over 125 miles long flowing through agricultural, residential, industrial, and forest land. Four major rivers, many smaller creeks, five wastewater treatment plants, and groundwater discharge to the Chehalis River. Flooding is a major problem in the relatively flat areas surrounding the cities of Chehalis and Centralia. As a result, construction of a flood-control dam in the upper basin has been proposed. One major concern of constructing a dam is the potentially severe impacts to fish health and habitat. The Chehalis River has routinely violated water quality standards for primarily temperature and dissolved oxygen. CE-QUAL-W2, a two-dimensional (longitudinal and vertical) hydrodynamic and water quality model, was used to simulate the Chehalis River, including free flowing river stretches and stratified (in summer) lake-like stretches. The goals of this research were to assess the flood retention structure’s impacts to water quality, as well as river responses to potential climate change scenarios. In order to use the model to achieve these goals, calibration to field data for flow, temperature, and water quality constituents was performed for the years 2013 and 2014. Once calibration was complete, model scenarios for future climate conditions and dam operating regimes were conducted. Future conditions showed predictions of warmer water temperatures and slight changes to water quality conditions on the river. As fish in the area prefer cooler water temperatures, this could pose a threat to fish health and habitat. Flood retention structures with the purpose of flood retention only (only operating during times of flooding) gave model predictions for daily maximum temperature higher than structures that employed flood retention and flow augmentation (operating during all times of the year). This suggested the management of flow passage or retention by the dam is important for water quality on the river. Title: Hydrodynamic and Water Quality Modeling of the Chehalis River in Washington Author: Van Glubt, Sarah, Wells, Scott A., Berger, Chris J. Year: 2017 The Chehalis River Basin is located in the southwest region of Washington and is over 125 miles long flowing through agricultural, residential, industrial, and forest land. Four major rivers, many smaller creeks, five wastewater treatment plants, and groundwater discharge to the Chehalis River. Flooding is a major problem in the relatively flat areas surrounding the cities of Chehalis and Centralia. As a result, construction of a flood-control dam in the upper basin has been proposed. One major concern of constructing a dam is the potentially severe impacts to fish health and habitat. The Chehalis River has routinely violated water quality standards for primarily temperature and dissolved oxygen. CE-QUAL-W2, a two-dimensional (longitudinal and vertical) hydrodynamic and water quality model, was used to simulate the Chehalis River, including free flowing river stretches and stratified (in summer) lake-like stretches. The goals of this research were to assess the flood retention structure’s impacts to water quality, as well as river responses to potential climate change scenarios. In order to use the model to achieve these goals, calibration to field data for flow, temperature, and water quality constituents was performed for the years 2013 and 2014. Once calibration was complete, model scenarios for future climate conditions and dam operating regimes were conducted. Future conditions showed predictions of warmer water temperatures and slight changes to water quality conditions on the river. As fish in the area prefer cooler water temperatures, this could pose a threat to fish health and habitat. Flood retention structures with the purpose of flood retention only (only operating during times of flooding) gave model predictions for daily maximum temperature higher than structures that employed flood retention and flow augmentation (operating during all times of the year). This suggested the management of flow passage or retention by the dam is important for water quality on the river. Close

• 6. [Article] Forest Management Scenarios in a Changing Climate: Trade-Offs Between Carbon, Timber, and Old Forest

  Balancing economic, ecological, and social values has long been a challenge in the forests of the Pacific Northwest, where conflict over timber harvest and old-growth habitat on public lands has been contentious ...

  Citation × Citation Citation Abstract Copy Title: Forest Management Scenarios in a Changing Climate: Trade-Offs Between Carbon, Timber, and Old Forest Author: Scheller, Robert M., Creutzburg, Megan K., Lucash, Melissa S., LeDuc, Stephen D., Johnson, Mark G. Year: 2017 Balancing economic, ecological, and social values has long been a challenge in the forests of the Pacific Northwest, where conflict over timber harvest and old-growth habitat on public lands has been contentious for the past several decades. The Northwest Forest Plan, adopted two decades ago to guide management on federal lands, is currently being revised as the region searches for a balance between sustainable timber yields and habitat for sensitive species. In addition, climate change imposes a high degree of uncertainty on future forest productivity, sustainability of timber harvest, wildfire risk, and species habitat. We evaluated the long-term, landscape-scale trade-offs among carbon (C) storage, timber yield, and old forest habitat given projected climate change and shifts in forest management policy across 2.1 million hectares of forests in the Oregon Coast Range. Projections highlight the divergence between private and public lands under business-as-usual forest management, where private industrial forests are heavily harvested and many public (especially federal) lands increase C and old forest over time but provide little timber. Three alternative management scenarios altering the amount and type of timber harvest show widely varying levels of ecosystem C and old-forest habitat. On federal lands, ecological forestry practices also allowed a simultaneous increase in old forest and natural early-seral habitat. The ecosystem C implications of shifts away from current practices were large, with current practices retaining up to 105 Tg more C than the alternative scenarios by the end of the century. Our results suggest climate change is likely to increase forest productivity by 30–41% and total ecosystem C storage by 11–15% over the next century as warmer winter temperatures allow greater forest productivity in cooler months. These gains in C storage are unlikely to be offset by wildfire under climate change, due to the legacy of management and effective fire suppression. Our scenarios of future conditions can inform policy makers, land managers, and the public about the potential effects of land management alternatives, climate change, and the trade-offs that are inherent to management and policy in the region. Title: Forest Management Scenarios in a Changing Climate: Trade-Offs Between Carbon, Timber, and Old Forest Author: Scheller, Robert M., Creutzburg, Megan K., Lucash, Melissa S., LeDuc, Stephen D., Johnson, Mark G. Year: 2017 Balancing economic, ecological, and social values has long been a challenge in the forests of the Pacific Northwest, where conflict over timber harvest and old-growth habitat on public lands has been contentious for the past several decades. The Northwest Forest Plan, adopted two decades ago to guide management on federal lands, is currently being revised as the region searches for a balance between sustainable timber yields and habitat for sensitive species. In addition, climate change imposes a high degree of uncertainty on future forest productivity, sustainability of timber harvest, wildfire risk, and species habitat. We evaluated the long-term, landscape-scale trade-offs among carbon (C) storage, timber yield, and old forest habitat given projected climate change and shifts in forest management policy across 2.1 million hectares of forests in the Oregon Coast Range. Projections highlight the divergence between private and public lands under business-as-usual forest management, where private industrial forests are heavily harvested and many public (especially federal) lands increase C and old forest over time but provide little timber. Three alternative management scenarios altering the amount and type of timber harvest show widely varying levels of ecosystem C and old-forest habitat. On federal lands, ecological forestry practices also allowed a simultaneous increase in old forest and natural early-seral habitat. The ecosystem C implications of shifts away from current practices were large, with current practices retaining up to 105 Tg more C than the alternative scenarios by the end of the century. Our results suggest climate change is likely to increase forest productivity by 30–41% and total ecosystem C storage by 11–15% over the next century as warmer winter temperatures allow greater forest productivity in cooler months. These gains in C storage are unlikely to be offset by wildfire under climate change, due to the legacy of management and effective fire suppression. Our scenarios of future conditions can inform policy makers, land managers, and the public about the potential effects of land management alternatives, climate change, and the trade-offs that are inherent to management and policy in the region. Close

• 7. [Article] Environmental DNA (eDNA) Detects the Invasive Crayfishes Orconectes rusticus and Pacifastacus leniusculus in Large Lakes of North America

  We report results of a study that made reciprocal comparisons of environmental DNA (eDNA) assays for two major invasive crayfishes between their disparate invasive ranges in North America. Specifically, ...

  Citation × Citation Citation Abstract Copy Title: Environmental DNA (eDNA) Detects the Invasive Crayfishes Orconectes rusticus and Pacifastacus leniusculus in Large Lakes of North America Author: Larson, Eric R., Renshaw, Mark A., Gantz, Crysta A., Umek, John, Chandra, Sudeep, Lodge, David M., Egan, Scott P. Year: 2017 We report results of a study that made reciprocal comparisons of environmental DNA (eDNA) assays for two major invasive crayfishes between their disparate invasive ranges in North America. Specifically, we tested for range expansions of the signal crayfish Pacifastacus leniusculus (Dana, 1852) into the Laurentian Great Lakes region known to be invaded by the rusty crayfish Orconectes rusticus (Girard, 1852), as well as for the invasion of O. rusticus into large lakes of California and Nevada, US known to be invaded by P. leniusculus. We compared eDNA detections to historic localities for O. rusticus within the Great Lakes, and to recent sampling for presence/absence and relative abundance of P. leniusculus in California and Nevada via overnight sets of baited traps. We successfully detected O. rusticus eDNA at six sites from the Great Lakes and P. leniusculus from six of seven lakes where it was known to occur in California and Nevada, but did not detect any range expansions by either species across the North American continent. eDNA appears suitable to detect benthic arthropods from exceptionally large lakes, and will likely be useful in applications for monitoring of new biological invasions into these and other freshwater and marine habitats. Title: Environmental DNA (eDNA) Detects the Invasive Crayfishes Orconectes rusticus and Pacifastacus leniusculus in Large Lakes of North America Author: Larson, Eric R., Renshaw, Mark A., Gantz, Crysta A., Umek, John, Chandra, Sudeep, Lodge, David M., Egan, Scott P. Year: 2017 We report results of a study that made reciprocal comparisons of environmental DNA (eDNA) assays for two major invasive crayfishes between their disparate invasive ranges in North America. Specifically, we tested for range expansions of the signal crayfish Pacifastacus leniusculus (Dana, 1852) into the Laurentian Great Lakes region known to be invaded by the rusty crayfish Orconectes rusticus (Girard, 1852), as well as for the invasion of O. rusticus into large lakes of California and Nevada, US known to be invaded by P. leniusculus. We compared eDNA detections to historic localities for O. rusticus within the Great Lakes, and to recent sampling for presence/absence and relative abundance of P. leniusculus in California and Nevada via overnight sets of baited traps. We successfully detected O. rusticus eDNA at six sites from the Great Lakes and P. leniusculus from six of seven lakes where it was known to occur in California and Nevada, but did not detect any range expansions by either species across the North American continent. eDNA appears suitable to detect benthic arthropods from exceptionally large lakes, and will likely be useful in applications for monitoring of new biological invasions into these and other freshwater and marine habitats. Close

• 8. [Article] Ecological Investigations to Select Mitigation Options to Reduce Vehicle-Caused Mortality of a Threatened Butterfly

  Whereas roads that bisect habitat are known to decrease population size through animal-vehicle collisions or interruption of key life history events, it is not always obvious how to reduce such impacts, ...

  Citation × Citation Citation Abstract Copy Title: Ecological Investigations to Select Mitigation Options to Reduce Vehicle-Caused Mortality of a Threatened Butterfly Author: Zielin, Sara B., Littlejohn, Jalene, de Rivera, Catherine E., Smith, Winston P., Jacobson, Sandra L. Year: 2016 Whereas roads that bisect habitat are known to decrease population size through animal-vehicle collisions or interruption of key life history events, it is not always obvious how to reduce such impacts, especially for flying organisms. We needed a quick, cost-efficient and effective way to determine how best to decrease vehicle-caused mortality while maintaining habitat connectivity for the federally listed Oregon silverspot butterfly, Speyeria zerene hippolyta. Therefore, we gathered targeted ecological information that informed selection of a mitigation option prior to implementation. We sampled butterfly behavior and environmental conditions along a highway and conducted a small-scale experiment along a decommissioned road corridor used by these butterflies. Using our findings, we recommended vegetation management and helped managers eliminate options they were considering that would be ineffective such as increasing shade or wind in the road, and installing fencing or hedgerows aimed at directing flight above traffic. This quick and inexpensive approach of using ecological observations and small-scale experiments to evaluate the likely success of each available mitigation option can be used to determine effective, species-specific solutions for reducing traffic impacts on pollinators and other small, flying organisms of conservation concern. Title: Ecological Investigations to Select Mitigation Options to Reduce Vehicle-Caused Mortality of a Threatened Butterfly Author: Zielin, Sara B., Littlejohn, Jalene, de Rivera, Catherine E., Smith, Winston P., Jacobson, Sandra L. Year: 2016 Whereas roads that bisect habitat are known to decrease population size through animal-vehicle collisions or interruption of key life history events, it is not always obvious how to reduce such impacts, especially for flying organisms. We needed a quick, cost-efficient and effective way to determine how best to decrease vehicle-caused mortality while maintaining habitat connectivity for the federally listed Oregon silverspot butterfly, Speyeria zerene hippolyta. Therefore, we gathered targeted ecological information that informed selection of a mitigation option prior to implementation. We sampled butterfly behavior and environmental conditions along a highway and conducted a small-scale experiment along a decommissioned road corridor used by these butterflies. Using our findings, we recommended vegetation management and helped managers eliminate options they were considering that would be ineffective such as increasing shade or wind in the road, and installing fencing or hedgerows aimed at directing flight above traffic. This quick and inexpensive approach of using ecological observations and small-scale experiments to evaluate the likely success of each available mitigation option can be used to determine effective, species-specific solutions for reducing traffic impacts on pollinators and other small, flying organisms of conservation concern. Close

• 9. [Article] Nesting Microhabitat Use by a Ground-nesting Songbird: Strict Preferences or Random Choice?

  Nest site choice of birds has the potential to affect predation rates on nests and reproductive success for many bird species, and is thus tied closely to fitness. Vegetation at a particular site influences ...

  Citation × Citation Citation Abstract Copy Title: Nesting Microhabitat Use by a Ground-nesting Songbird: Strict Preferences or Random Choice? Author: Allen, Jazzmine Year: 2016 Nest site choice of birds has the potential to affect predation rates on nests and reproductive success for many bird species, and is thus tied closely to fitness. Vegetation at a particular site influences concealment (and predation rate as a result). Research has shown that birds of various species base nest site choice on variables like nest height, and especially vegetation cover within the microhabitat around a site. I studied nest site choice in ground-nesting birds, which tend to experience high predation rates near the nest site, and therefore might be expected to be particular choosy about vegetation near the nest. I used Spotted Towhees (Pipilo maculatus) nesting in Lesser Park in Portland, OR, as a model species for ground-nesting birds. I compared Spotted Towhees nest sites (n = 15) to both randomly-chosen sites within 10 m of the nests (n = 15; random territory sites) and other randomly-chosen locations throughout the park (n = 25; random park locations) to test whether vegetation structure and floristic composition differed. I measured (1) vegetation height and density near the nest, (2) size and spacing of trees around nests, and (3) floristic composition of vegetation near nests. I found that nest sites and both categories of random sites had dense and equal amounts of vegetation near ground level (0-20 cm above ground), but that nest sites had more vegetation between 21-40 cm and 61-100 cm above ground than random locations. However, there was no evidence that the structure of the tree community or species composition differed between nest sites and random locations. Towhees thus appear to prefer to place nests in locations with greater vertical cover directly over the nest. Title: Nesting Microhabitat Use by a Ground-nesting Songbird: Strict Preferences or Random Choice? Author: Allen, Jazzmine Year: 2016 Nest site choice of birds has the potential to affect predation rates on nests and reproductive success for many bird species, and is thus tied closely to fitness. Vegetation at a particular site influences concealment (and predation rate as a result). Research has shown that birds of various species base nest site choice on variables like nest height, and especially vegetation cover within the microhabitat around a site. I studied nest site choice in ground-nesting birds, which tend to experience high predation rates near the nest site, and therefore might be expected to be particular choosy about vegetation near the nest. I used Spotted Towhees (Pipilo maculatus) nesting in Lesser Park in Portland, OR, as a model species for ground-nesting birds. I compared Spotted Towhees nest sites (n = 15) to both randomly-chosen sites within 10 m of the nests (n = 15; random territory sites) and other randomly-chosen locations throughout the park (n = 25; random park locations) to test whether vegetation structure and floristic composition differed. I measured (1) vegetation height and density near the nest, (2) size and spacing of trees around nests, and (3) floristic composition of vegetation near nests. I found that nest sites and both categories of random sites had dense and equal amounts of vegetation near ground level (0-20 cm above ground), but that nest sites had more vegetation between 21-40 cm and 61-100 cm above ground than random locations. However, there was no evidence that the structure of the tree community or species composition differed between nest sites and random locations. Towhees thus appear to prefer to place nests in locations with greater vertical cover directly over the nest. Close

• 10. [Article] Intestinal Microbiota Diversity of Pre-Smolt Steelhead (Oncorhynchus mykiss) Across Six Oregon and Washington Hatcheries

  The Pacific Northwest is known for its once-abundant wild salmonid populations that have been in decline for more than 50 years due to habitat destruction and commercial overexploitation. To compensate, ...

  Citation × Citation Citation Abstract Copy Title: Intestinal Microbiota Diversity of Pre-Smolt Steelhead (Oncorhynchus mykiss) Across Six Oregon and Washington Hatcheries Author: Yildirimer, Christina Carrell Year: 2017 The Pacific Northwest is known for its once-abundant wild salmonid populations that have been in decline for more than 50 years due to habitat destruction and commercial overexploitation. To compensate, federal and state agencies annually release hundreds of thousands of hatchery-reared fish into the wild. However, accumulating data indicate that hatchery fish have lower fitness in natural environments, and that hatchery rearing negatively influences return rates of anadromous salmonids. Recently, mounting evidence revealed that the richness and diversity of intestinal microbial species influence host health. We examined the gut microbiota of pre-migratory hatchery-reared steelhead (Oncorhynchus mykiss) to assess microbial community diversity. The Cascade Mountains serve as an allopatric border between two distinct clades of steelhead that show significant differences in genomic and mitochondrial diversity. We identified differences in core microbiota of hatchery-reared fish that correlate with this divergent phylogeographic distribution. Steelhead sampled from hatcheries east of the Cascades had overall greater core gut microbiota diversity. These differences were found despite similarities in diet and rearing conditions. In addition to taxonomic variation across the geographic divide, we identified significant differences in metabolic pathways using PICRUSt gene prediction software. Our analysis revealed significant enrichment of genes associated with lipid metabolism in the gut microbiome of western fish. 8 of 19 individual lipid metabolism pathways were more prominent in western populations. Lipids are a vital nutritional component for teleost species involved in migration and subsequent return for spawning in natal environments. We hypothesize that the observed differences in lipid metabolism across this phylogenetic divide results from an increased ability of eastern Cascade (O. m. gairdneri) fish to utilize lipids taken in via the diet. This increased absorption and utilization would make lipids less available for the intestinal microbiota of the eastern fish, as evidenced by the lower abundance of lipid metabolism genes in the east. Our research utilizes information from the microbiome to understand the phenotypic implications occurring in segregated populations of hatchery-reared steelhead, further confirming elements of coevolution between an organism and its internal environment. Title: Intestinal Microbiota Diversity of Pre-Smolt Steelhead (Oncorhynchus mykiss) Across Six Oregon and Washington Hatcheries Author: Yildirimer, Christina Carrell Year: 2017 The Pacific Northwest is known for its once-abundant wild salmonid populations that have been in decline for more than 50 years due to habitat destruction and commercial overexploitation. To compensate, federal and state agencies annually release hundreds of thousands of hatchery-reared fish into the wild. However, accumulating data indicate that hatchery fish have lower fitness in natural environments, and that hatchery rearing negatively influences return rates of anadromous salmonids. Recently, mounting evidence revealed that the richness and diversity of intestinal microbial species influence host health. We examined the gut microbiota of pre-migratory hatchery-reared steelhead (Oncorhynchus mykiss) to assess microbial community diversity. The Cascade Mountains serve as an allopatric border between two distinct clades of steelhead that show significant differences in genomic and mitochondrial diversity. We identified differences in core microbiota of hatchery-reared fish that correlate with this divergent phylogeographic distribution. Steelhead sampled from hatcheries east of the Cascades had overall greater core gut microbiota diversity. These differences were found despite similarities in diet and rearing conditions. In addition to taxonomic variation across the geographic divide, we identified significant differences in metabolic pathways using PICRUSt gene prediction software. Our analysis revealed significant enrichment of genes associated with lipid metabolism in the gut microbiome of western fish. 8 of 19 individual lipid metabolism pathways were more prominent in western populations. Lipids are a vital nutritional component for teleost species involved in migration and subsequent return for spawning in natal environments. We hypothesize that the observed differences in lipid metabolism across this phylogenetic divide results from an increased ability of eastern Cascade (O. m. gairdneri) fish to utilize lipids taken in via the diet. This increased absorption and utilization would make lipids less available for the intestinal microbiota of the eastern fish, as evidenced by the lower abundance of lipid metabolism genes in the east. Our research utilizes information from the microbiome to understand the phenotypic implications occurring in segregated populations of hatchery-reared steelhead, further confirming elements of coevolution between an organism and its internal environment. Close

• 11. [Article] The Interplay Between Landscape Structure and Biotic Interactions

  Landscape structure and biotic interactions are closely linked. We identify five aspects of landscape structure that contribute to the co-occurrence of species and restrict or enable different types of ...

  Citation × Citation Citation Abstract Copy Title: The Interplay Between Landscape Structure and Biotic Interactions Author: Zarnetske, Phoebe, Baiser, Benjamin, Strecker, Angela L., Record, Sydne, Belmaker, Jonathan, Tuanmu, Mao-Ning Year: 2017 Landscape structure and biotic interactions are closely linked. We identify five aspects of landscape structure that contribute to the co-occurrence of species and restrict or enable different types of biotic interactions: patch size and habitat amount, isolation of patches, barriers to dispersal and movement, persistence of landscape structure, and landscape complexity. In addition, these aspects of landscape structure influence the strength and outcome of biotic interactions. Whereas most research focuses on the effects of the abiotic environment on species and their biotic interactions, research on foundation species and ecosystem engineers demonstrates the important influence of biotic interactions on landscape structure itself, including effects on landscape complexity, extent of habitat, and the structure of landscape features. In this review, we describe ecological theories that lay the foundation for interplay between landscape structure and biotic interactions, and summarize these connections across an array of interacting species in freshwater, marine, and terrestrial systems. We end with suggestions for integrating the fields of landscape ecology and community ecology to better understand the connections between landscape structure and biotic interactions and better predict their dynamics in light of global change. Title: The Interplay Between Landscape Structure and Biotic Interactions Author: Zarnetske, Phoebe, Baiser, Benjamin, Strecker, Angela L., Record, Sydne, Belmaker, Jonathan, Tuanmu, Mao-Ning Year: 2017 Landscape structure and biotic interactions are closely linked. We identify five aspects of landscape structure that contribute to the co-occurrence of species and restrict or enable different types of biotic interactions: patch size and habitat amount, isolation of patches, barriers to dispersal and movement, persistence of landscape structure, and landscape complexity. In addition, these aspects of landscape structure influence the strength and outcome of biotic interactions. Whereas most research focuses on the effects of the abiotic environment on species and their biotic interactions, research on foundation species and ecosystem engineers demonstrates the important influence of biotic interactions on landscape structure itself, including effects on landscape complexity, extent of habitat, and the structure of landscape features. In this review, we describe ecological theories that lay the foundation for interplay between landscape structure and biotic interactions, and summarize these connections across an array of interacting species in freshwater, marine, and terrestrial systems. We end with suggestions for integrating the fields of landscape ecology and community ecology to better understand the connections between landscape structure and biotic interactions and better predict their dynamics in light of global change. Close

• 12. [Article] Winter Diet of Bobolink, a Long-Distance Migratory Grassland Bird, Inferred from Feather Isotopes

  Effective conservation of migratory bird populations depends on advancements in our understanding of processes throughout the life cycle. Fundamental information about wintering ecology (e.g., habitat ...

  Citation × Citation Citation Abstract Copy Title: Winter Diet of Bobolink, a Long-Distance Migratory Grassland Bird, Inferred from Feather Isotopes Author: Renfrew, Rosalind B., Hill, Jason M., Kim, Daniel H., Romanek, Christopher, Perlut, Noah G. Year: 2017 Effective conservation of migratory bird populations depends on advancements in our understanding of processes throughout the life cycle. Fundamental information about wintering ecology (e.g., habitat use and diet composition) remains limited, which limits assessment of threats to populations during winter. Bobolink (Dolichonyx oryzivorus) is a year-round grassland obligate and Nearctic-Neotropical migrant that undergoes 2 complete molts each year, including a complete prealternate molt on the South American wintering grounds. This unusual winter molt provides a rare opportunity to examine, using stable isotope analysis, the timing and contribution of foraging resources in the Bobolink diet prior to northbound migration from disparate breeding populations. We compared winter diet composition among 3 breeding populations of Bobolinks and during 3 stages of winter molt using stable carbon isotope ratios. We used mixing models to compare the ratio of carbon-12 to carbon-13 isotope (d13C value) in feathers—grown on the wintering grounds but collected from individuals (n ¼ 105) breeding in Vermont, Nebraska, and North Dakota, USA—to estimate diet during early, middle, and late winter molt. Across the 3 breeding populations, Bobolinks relied on C3 sources for nearly one-third of their diet during the winter molt. Isotope data from feathers collected while growing on the wintering grounds from birds in rice vs. non-rice regions supported our assumption that C3 signatures are primarily due to a rice diet. The proportion of rice consumed was highest during late molt, corresponding with a period of greater rice availability to Bobolinks. Our results demonstrate that rice was a substantial component of the diet throughout the winter molt and was most exploited prior to northbound migration. Research is needed on the potential trade-offs of feeding on abundant cultivated rice, including its nutritional value and associated risks and conflicts from foraging in an agricultural setting. Title: Winter Diet of Bobolink, a Long-Distance Migratory Grassland Bird, Inferred from Feather Isotopes Author: Renfrew, Rosalind B., Hill, Jason M., Kim, Daniel H., Romanek, Christopher, Perlut, Noah G. Year: 2017 Effective conservation of migratory bird populations depends on advancements in our understanding of processes throughout the life cycle. Fundamental information about wintering ecology (e.g., habitat use and diet composition) remains limited, which limits assessment of threats to populations during winter. Bobolink (Dolichonyx oryzivorus) is a year-round grassland obligate and Nearctic-Neotropical migrant that undergoes 2 complete molts each year, including a complete prealternate molt on the South American wintering grounds. This unusual winter molt provides a rare opportunity to examine, using stable isotope analysis, the timing and contribution of foraging resources in the Bobolink diet prior to northbound migration from disparate breeding populations. We compared winter diet composition among 3 breeding populations of Bobolinks and during 3 stages of winter molt using stable carbon isotope ratios. We used mixing models to compare the ratio of carbon-12 to carbon-13 isotope (d13C value) in feathers—grown on the wintering grounds but collected from individuals (n ¼ 105) breeding in Vermont, Nebraska, and North Dakota, USA—to estimate diet during early, middle, and late winter molt. Across the 3 breeding populations, Bobolinks relied on C3 sources for nearly one-third of their diet during the winter molt. Isotope data from feathers collected while growing on the wintering grounds from birds in rice vs. non-rice regions supported our assumption that C3 signatures are primarily due to a rice diet. The proportion of rice consumed was highest during late molt, corresponding with a period of greater rice availability to Bobolinks. Our results demonstrate that rice was a substantial component of the diet throughout the winter molt and was most exploited prior to northbound migration. Research is needed on the potential trade-offs of feeding on abundant cultivated rice, including its nutritional value and associated risks and conflicts from foraging in an agricultural setting. Close

• 13. [Article] Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status and Trend

  We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based ...

  Citation × Citation Citation Abstract Copy Title: Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status and Trend Author: Miller, Stephanie A., Gordon, Sean N, Eldred, Peter, Beloin, Ronald M., Wilcox, Steve, Raggon, Mark, Andersen, Heidi, Muldoon, Ariel Year: 2015 We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based on stream sampling data collected from 2002 to the 2013 (214 watersheds) as part of an eight year repeating (rotating) sample design. We are currently halfway through our second rotation of stream sampling, and have repeated 110 watersheds since the second rotation began in 2009. The analysis presented in this report uses roughly half the number of watersheds as was originally intended by the sample design since re-visitation will not be completed until 2017. In the meantime, we compare the first rotation of visits (2002-2009) to the first four years of the second rotation (2010-2013) giving us a general idea of current patterns. To evaluate stream condition we used a reference condition nearest neighbor statistical approach to calculate the stream physical habitat scores based on substrate, wood, and pool metrics for each watershed. Macroinvertebrates and water temperature were analyzed separately from physical habitat and provide additional assessment of overall watershed condition. Scores for both stream and upslope/riparian conditions were normalized to fall between 0 (poor) and 100 (good). Title: Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status and Trend Author: Miller, Stephanie A., Gordon, Sean N, Eldred, Peter, Beloin, Ronald M., Wilcox, Steve, Raggon, Mark, Andersen, Heidi, Muldoon, Ariel Year: 2015 We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based on stream sampling data collected from 2002 to the 2013 (214 watersheds) as part of an eight year repeating (rotating) sample design. We are currently halfway through our second rotation of stream sampling, and have repeated 110 watersheds since the second rotation began in 2009. The analysis presented in this report uses roughly half the number of watersheds as was originally intended by the sample design since re-visitation will not be completed until 2017. In the meantime, we compare the first rotation of visits (2002-2009) to the first four years of the second rotation (2010-2013) giving us a general idea of current patterns. To evaluate stream condition we used a reference condition nearest neighbor statistical approach to calculate the stream physical habitat scores based on substrate, wood, and pool metrics for each watershed. Macroinvertebrates and water temperature were analyzed separately from physical habitat and provide additional assessment of overall watershed condition. Scores for both stream and upslope/riparian conditions were normalized to fall between 0 (poor) and 100 (good). Close

• 14. [Article] Osmosis Alive – Algae Water Filtration System

  Goals: Our goals of this project was to: Obtain an energy efficient, self-sufficient system to help reduce waste and money, and reuse and recycle water. To have a successful, natural, and more self-sufficient ...

  Citation × Citation Citation Abstract Copy Title: Osmosis Alive – Algae Water Filtration System Author: Gurganus, Adrik, Soe, Htet Htet, Baird, Jonathan, Beckett, Liam, Vautravers, Nick, Swensen, Parker, Johnson, Tucker Year: 2015 Goals: Our goals of this project was to: Obtain an energy efficient, self-sufficient system to help reduce waste and money, and reuse and recycle water. To have a successful, natural, and more self-sufficient filtration system, using algae. To use algae and other plants as an efficient way to filter water. To create a water filtration system that is organic and would have 0 waste. To use the water in the best and most efficient way possible, and to reduce energy and coal/oil consumption (water turbine) To make our community cleaner and greener, and reduce carbon footprint, pollution, and environmental impact. When we started this project, our first thought was renewable energy. We wanted to create a self-sustaining urban habitat for Humans to live in. We eventually began to gravitate towards a more specific concept which would involve grey water treatment. While gray water is known to be used for in home appliances such as toilets, it's not really used to generate electricity. What we have created is a system that utilizes the kinetic energy of grey water to help power the system itself. The system includes both standard filters and a less common non-photosynthetic algae filter to allow better use of the recycled city rainwater. If one spends time in our fine city, they will certainly notice the many old buildings around Portland. Though, they have majesty and charm flowing out of the rafters, they are also often inefficient in many regards. The other thing they will likely notice is the consistent downpour Portland has during the winter months, and even an occasional trickle during the summer months. The Peaceful Penguins team also manages to be this observant. We saw in our tours that many of the greener buildings in Portland make use of grey water run offs, i.e. rain, and recycle it for use around the facility. We aim to truly re-envision the way we think about grey water and it’s recycling. Title: Osmosis Alive – Algae Water Filtration System Author: Gurganus, Adrik, Soe, Htet Htet, Baird, Jonathan, Beckett, Liam, Vautravers, Nick, Swensen, Parker, Johnson, Tucker Year: 2015 Goals: Our goals of this project was to: Obtain an energy efficient, self-sufficient system to help reduce waste and money, and reuse and recycle water. To have a successful, natural, and more self-sufficient filtration system, using algae. To use algae and other plants as an efficient way to filter water. To create a water filtration system that is organic and would have 0 waste. To use the water in the best and most efficient way possible, and to reduce energy and coal/oil consumption (water turbine) To make our community cleaner and greener, and reduce carbon footprint, pollution, and environmental impact. When we started this project, our first thought was renewable energy. We wanted to create a self-sustaining urban habitat for Humans to live in. We eventually began to gravitate towards a more specific concept which would involve grey water treatment. While gray water is known to be used for in home appliances such as toilets, it's not really used to generate electricity. What we have created is a system that utilizes the kinetic energy of grey water to help power the system itself. The system includes both standard filters and a less common non-photosynthetic algae filter to allow better use of the recycled city rainwater. If one spends time in our fine city, they will certainly notice the many old buildings around Portland. Though, they have majesty and charm flowing out of the rafters, they are also often inefficient in many regards. The other thing they will likely notice is the consistent downpour Portland has during the winter months, and even an occasional trickle during the summer months. The Peaceful Penguins team also manages to be this observant. We saw in our tours that many of the greener buildings in Portland make use of grey water run offs, i.e. rain, and recycle it for use around the facility. We aim to truly re-envision the way we think about grey water and it’s recycling. Close

• 15. [Article] The Impeccable Timing of the Apple Maggot Fly, <i>Rhagoletis pomonella</i> (Dipetera: Tephritidae), and its Implications for Ecological Speciation

  Speciation is the process by which life diversifies into discrete forms, and understanding its underlying mechanisms remains a primary focus for biologists. Increasingly, empirical studies are helping ...

  Citation × Citation Citation Abstract Copy Title: The Impeccable Timing of the Apple Maggot Fly, <i>Rhagoletis pomonella</i> (Dipetera: Tephritidae), and its Implications for Ecological Speciation Author: Mattsson, Monte Arthur Year: 2015 Speciation is the process by which life diversifies into discrete forms, and understanding its underlying mechanisms remains a primary focus for biologists. Increasingly, empirical studies are helping explain the role of ecology in generating biodiversity. Adaptive radiations are often propelled by selective fitness tradeoffs experienced by individuals that invade new habitats, resulting in reproductive isolation from ancestral conspecifics and potentially cladogenesis. Host specialist insects are among the most speciose organisms known and serve as highly useful models for studying adaptive radiations. We are just beginning to understand the pace and degree with which these insects diversify. The apple maggot, Rhagoletis pomonella, is a well-studied insect whose eastern and southern populations are models for ecological speciation. Recently (40–65 ya), the fly has invaded the Pacific Northwestern United States through human-transported apples infested with larvae. There, populations of R. pomonella have rapidly colonized two novel hawthorn hosts whose fruiting times bracket apple’s (early-season native Crataegus douglasii and introduced C. monogyna, which fruits late in the season). The recent introduction might initiate host shifts, providing opportunities to examine the pace and mechanistic means with which host races (an evolutionary stage preceding speciation) become established. Here, I demonstrate that host-associated populations at a site in southwest Washington are partially allochronically isolated from one another, and life cycles temporally match with natal host fruit ripening times in sympatry. If spatially widespread, these temporal barriers could result in reproductive isolation and possibly cladogenesis. Implications of these findings reach beyond academic import, as R. pomonella is expanding not only its host range, but its geographic range is encroaching upon central Washington, the site of a multi-billion dollar per year apple-growing industry. Title: The Impeccable Timing of the Apple Maggot Fly, <i>Rhagoletis pomonella</i> (Dipetera: Tephritidae), and its Implications for Ecological Speciation Author: Mattsson, Monte Arthur Year: 2015 Speciation is the process by which life diversifies into discrete forms, and understanding its underlying mechanisms remains a primary focus for biologists. Increasingly, empirical studies are helping explain the role of ecology in generating biodiversity. Adaptive radiations are often propelled by selective fitness tradeoffs experienced by individuals that invade new habitats, resulting in reproductive isolation from ancestral conspecifics and potentially cladogenesis. Host specialist insects are among the most speciose organisms known and serve as highly useful models for studying adaptive radiations. We are just beginning to understand the pace and degree with which these insects diversify. The apple maggot, Rhagoletis pomonella, is a well-studied insect whose eastern and southern populations are models for ecological speciation. Recently (40–65 ya), the fly has invaded the Pacific Northwestern United States through human-transported apples infested with larvae. There, populations of R. pomonella have rapidly colonized two novel hawthorn hosts whose fruiting times bracket apple’s (early-season native Crataegus douglasii and introduced C. monogyna, which fruits late in the season). The recent introduction might initiate host shifts, providing opportunities to examine the pace and mechanistic means with which host races (an evolutionary stage preceding speciation) become established. Here, I demonstrate that host-associated populations at a site in southwest Washington are partially allochronically isolated from one another, and life cycles temporally match with natal host fruit ripening times in sympatry. If spatially widespread, these temporal barriers could result in reproductive isolation and possibly cladogenesis. Implications of these findings reach beyond academic import, as R. pomonella is expanding not only its host range, but its geographic range is encroaching upon central Washington, the site of a multi-billion dollar per year apple-growing industry. Close

• 16. [Article] Community level impacts associated with the invasion of English ivy (Hedera spp.) in Forest Park: a look at the impacts of ivy on community composition and soil moisture.

  Invasive species degrade ecosystems by altering natural processes and decreasing the abundance and diversity of native flora. Communities with major fluctuations in resource supply allow invasive species ...

  Citation × Citation Citation Abstract Copy Title: Community level impacts associated with the invasion of English ivy (Hedera spp.) in Forest Park: a look at the impacts of ivy on community composition and soil moisture. Author: Copp, Sara Rose Year: 2014 Invasive species degrade ecosystems by altering natural processes and decreasing the abundance and diversity of native flora. Communities with major fluctuations in resource supply allow invasive species to exploit limiting resources making the community prone to invasion. In the Pacific Northwest, urban forests characterized with limited light and seasonally limited soil moisture are being dominated by nonnative English ivy (Hedera spp). Three observational studies were conducted in the Southern end of Forest Park within the Balch Creek Subwatershed in Portland, Oregon in order to understand 1) how English ivy changes over three growing seasons, 2) how the native understory composition responds to English ivy, 3) if the dominance of English ivy reduces soil moisture to neighboring plants, 4) how English ivy and two co-occurring native herbs (Hydrophyllum tenuipes and Vancouveria hexandra) physiologically respond to seasonal changes in soil moisture. Percent cover of the understory community was collected in both 2010 and 2013 growing seasons in 54 plots in order to understand the change in cover over time. Community response and the relationship with soil moisture was analyzed using percent cover of the understory community and associated environmental variables including soil moisture collected in 128 plots during the 2013 field season. Finally, 15 plots with co-occurring Hedera spp, H. tenuipes and V. hexandra were sampled for stomatal conductance, leaf water potential, and associated environmental variables. Results show ivy cover increases on average 14% between 2010 and 2013 while native understory cover increased on average < 1%. Once ivy forms dense cover over 44% there is a reduction of native richness, diversity and herb cover while also an increase in available soil moisture and deciduous canopy cover. There were disparate impacts to different functional groups and between species. As functional group, the herbaceous community was the most impacted by ivy invasion. The shrubs and fern community had a variable response to ivy invasion. Many of the fern and shrub species least impacted by ivy also had associations with high soil moisture and deciduous canopy cover. Finally, data suggests that ivy does not take advantage of seasonally limiting soil moisture to invade the understory community. This study indicates that English ivy is both efficient at water use and may have the ability to obtain water from distant locations throughout the forest. Once established, ivy has the ability to alter the community composition. Ivy removal and habitat restoration are essential in order to maintain and enhance biodiversity in Forest Park. Title: Community level impacts associated with the invasion of English ivy (Hedera spp.) in Forest Park: a look at the impacts of ivy on community composition and soil moisture. Author: Copp, Sara Rose Year: 2014 Invasive species degrade ecosystems by altering natural processes and decreasing the abundance and diversity of native flora. Communities with major fluctuations in resource supply allow invasive species to exploit limiting resources making the community prone to invasion. In the Pacific Northwest, urban forests characterized with limited light and seasonally limited soil moisture are being dominated by nonnative English ivy (Hedera spp). Three observational studies were conducted in the Southern end of Forest Park within the Balch Creek Subwatershed in Portland, Oregon in order to understand 1) how English ivy changes over three growing seasons, 2) how the native understory composition responds to English ivy, 3) if the dominance of English ivy reduces soil moisture to neighboring plants, 4) how English ivy and two co-occurring native herbs (Hydrophyllum tenuipes and Vancouveria hexandra) physiologically respond to seasonal changes in soil moisture. Percent cover of the understory community was collected in both 2010 and 2013 growing seasons in 54 plots in order to understand the change in cover over time. Community response and the relationship with soil moisture was analyzed using percent cover of the understory community and associated environmental variables including soil moisture collected in 128 plots during the 2013 field season. Finally, 15 plots with co-occurring Hedera spp, H. tenuipes and V. hexandra were sampled for stomatal conductance, leaf water potential, and associated environmental variables. Results show ivy cover increases on average 14% between 2010 and 2013 while native understory cover increased on average < 1%. Once ivy forms dense cover over 44% there is a reduction of native richness, diversity and herb cover while also an increase in available soil moisture and deciduous canopy cover. There were disparate impacts to different functional groups and between species. As functional group, the herbaceous community was the most impacted by ivy invasion. The shrubs and fern community had a variable response to ivy invasion. Many of the fern and shrub species least impacted by ivy also had associations with high soil moisture and deciduous canopy cover. Finally, data suggests that ivy does not take advantage of seasonally limiting soil moisture to invade the understory community. This study indicates that English ivy is both efficient at water use and may have the ability to obtain water from distant locations throughout the forest. Once established, ivy has the ability to alter the community composition. Ivy removal and habitat restoration are essential in order to maintain and enhance biodiversity in Forest Park. Close

• 17. [Article] Informal Trails and the Spread of Invasive Species in Urban Natural Areas: Spatial Analysis of Informal Trails and their Effects on Understory Plant Communities in Forest Park, Portland, Oregon

  The risk of spread and establishment of invasive species to interior habitat within urban parks is of great concern to park managers and ecologists. Informal trails as a vector for this transmission are ...

  Citation × Citation Citation Abstract Copy Title: Informal Trails and the Spread of Invasive Species in Urban Natural Areas: Spatial Analysis of Informal Trails and their Effects on Understory Plant Communities in Forest Park, Portland, Oregon Author: Van Winkle, Jill Elise Year: 2014 The risk of spread and establishment of invasive species to interior habitat within urban parks is of great concern to park managers and ecologists. Informal trails as a vector for this transmission are not well understood. To characterize effects of informal trails on understory plant communities, I conducted a study of the informal trail network in Forest Park, Portland, Oregon. The system of 382 informal trails was mapped and evaluated qualitatively, and from this population a systematic sample was selected for analysis. To identify hotspots of informal trail activity, showing the relationship of informal trails to formal trails, other park features, and trail use level, I evaluated all mapped trails using line density spatial analysis tools. To characterize understory communities, thirty transects were placed along informal trails, with paired transects along nearby formal trails for comparison. I measured percent cover by species for non-graminoid understory plants, and percent total plant cover at different structural layers, for quadrats at regular intervals from the trail edge. I calculated richness and Shannon-Weaver diversity for non-graminoid understory plants. For community analysis, species were grouped by dispersal strategy, native status, and growth form. Observations from system mapping suggest that "hidden" behaviors drive many informal trails: bathroom stops, party spots, waste dumping, and camps make up 28% of all informal trails. Trails to private property are few but represent over 29% of total trail length. Informal trail density is highest along Balch Creek. Hotspots of informal trail presence are associated with trailheads, trail intersections, and water access. Quadrats located within one meter of informal trails showed higher richness and diversity due to increased number of introduced and ruderal species. Formal trails exhibit these same patterns to a stronger degree and over a greater distance (two meters) from the trail edge. Distance from trail edge explained variation in plant communities when grouped by dispersal type, but not by growth form. This study shows that although informal trails are widely distributed throughout the park, they are concentrated in high use areas. The presence of informal trails leads to significant changes in Forest Park plant communities that favor invasive and ruderal species, but these effects appear limited to two meters from the trail edge. Title: Informal Trails and the Spread of Invasive Species in Urban Natural Areas: Spatial Analysis of Informal Trails and their Effects on Understory Plant Communities in Forest Park, Portland, Oregon Author: Van Winkle, Jill Elise Year: 2014 The risk of spread and establishment of invasive species to interior habitat within urban parks is of great concern to park managers and ecologists. Informal trails as a vector for this transmission are not well understood. To characterize effects of informal trails on understory plant communities, I conducted a study of the informal trail network in Forest Park, Portland, Oregon. The system of 382 informal trails was mapped and evaluated qualitatively, and from this population a systematic sample was selected for analysis. To identify hotspots of informal trail activity, showing the relationship of informal trails to formal trails, other park features, and trail use level, I evaluated all mapped trails using line density spatial analysis tools. To characterize understory communities, thirty transects were placed along informal trails, with paired transects along nearby formal trails for comparison. I measured percent cover by species for non-graminoid understory plants, and percent total plant cover at different structural layers, for quadrats at regular intervals from the trail edge. I calculated richness and Shannon-Weaver diversity for non-graminoid understory plants. For community analysis, species were grouped by dispersal strategy, native status, and growth form. Observations from system mapping suggest that "hidden" behaviors drive many informal trails: bathroom stops, party spots, waste dumping, and camps make up 28% of all informal trails. Trails to private property are few but represent over 29% of total trail length. Informal trail density is highest along Balch Creek. Hotspots of informal trail presence are associated with trailheads, trail intersections, and water access. Quadrats located within one meter of informal trails showed higher richness and diversity due to increased number of introduced and ruderal species. Formal trails exhibit these same patterns to a stronger degree and over a greater distance (two meters) from the trail edge. Distance from trail edge explained variation in plant communities when grouped by dispersal type, but not by growth form. This study shows that although informal trails are widely distributed throughout the park, they are concentrated in high use areas. The presence of informal trails leads to significant changes in Forest Park plant communities that favor invasive and ruderal species, but these effects appear limited to two meters from the trail edge. Close

• 18. [Article] Applying GPS and Accelerometers to the Study of African Savanna (Loxodonta africana) and Asian Elephant (Elephas maximus) Welfare in Zoos

  African savanna elephants (Loxodonta africana) and Asian elephants (Elephas maximus) are a focus of welfare research in zoos due to their high intelligence, complex social structure, and sheer size. Due ...

  Citation × Citation Citation Abstract Copy Title: Applying GPS and Accelerometers to the Study of African Savanna (Loxodonta africana) and Asian Elephant (Elephas maximus) Welfare in Zoos Author: Holdgate, Matthew Robert Year: 2015 African savanna elephants (Loxodonta africana) and Asian elephants (Elephas maximus) are a focus of welfare research in zoos due to their high intelligence, complex social structure, and sheer size. Due to these challenges, some argue that zoos are inherently incapable of providing appropriate care for elephants, while others believe that zoos can fulfill the needs of these species with improved husbandry. There is a general consensus from both within and outside of zoos, however, that zoos must improve their elephant programs or cease exhibiting these animals altogether. Now more than ever, applied research on zoo elephant welfare is needed to provide context for this debate. Researchers are interested in how far zoo elephants walk due to the potential health and welfare benefits of walking in these highly mobile species. Zoo researchers recently adopted GPS technology to study elephant walking, and preliminary evidence suggests that African elephants in large zoo exhibits walk distances that correspond with wild elephants under non-extreme conditions. However, data are limited from Asian elephants and from elephants in more typically-sized exhibits. In Chapter Two, I discuss important methodological considerations of utilizing GPS in a zoo environment, including an introduction to the technology, sources of error and mitigation, methods to improve GPS performance, and possible effects of GPS device attachment on animal behavior. This review shows GPS performance is adequate for tracking zoo elephant walking when proper methodological techniques are applied, and should serve as a useful reference for zoo researchers considering using GPS. In Chapter Three, I used GPS anklets to measure outdoor daily walking distance in 56 adult female African (n = 33) and Asian (n = 23) elephants housed in 30 zoos. I collected 259 days of data and found that elephants walked an average of 5.34 km/day with no significant difference between species. Multivariate regression models predicted that elephants with more dynamic feeding regimens (more diverse feeding types and frequencies; unscheduled feeding times) will walk more. Distance walked was also predicted to be higher in elephants that spend time in a greater number of different social groups. Distance walked was predicted to decline with age. Finally, I found a significant negative correlation between distance walked and nighttime space experience. The results of the analysis suggest that zoos that want to increase walking in their elephants need not rely solely on larger exhibits, but can increase walking by adding quality and complexity to exhibits. However, my results failed to establish a definitive link between walking distance and other validated measures of elephant welfare. Thus, the direct health and welfare benefits of walking in zoo elephants remain unresolved. Resting behaviors are an essential component of animal welfare, but have received little attention in zoological research. In Chapter Four, I used accelerometers in anklets to complete the first large-scale multi-species investigation of zoo elephant recumbence. I collected 344 days of data from 72 adult female African (n = 44) and Asian (n = 28) elephants at 40 zoos. I found that African elephants are recumbent an average of 2.14 hours/day, which is significantly less than Asian elephants at 3.22 hours/day. Multivariate regression models predicted that African elephant recumbence increases when they experience more space at night, and Asian elephant recumbence increases when they spend time housed alone. Both species showed a similar response to substrate, such that African elephants spending time on all-hard substrates are predicted to be recumbent less, while Asian elephants spending time on all-soft substrates are predicted to be recumbent more. The discovery that occasional non-recumbence is a common behavior in zoo elephants also introduces a new area of research that may have important animal welfare consequences. Finally, this study established that zoos should continue their efforts to replace hard substrate with soft substrate in order to provide zoo elephants with environments that facilitate recumbence. Overall, this work assessed walking and recumbence in zoo elephants, which will allow zoos to gauge the prevalence of these behaviors in their elephants as compared to the sub-population studied here. A variety of factors that are associated with these behaviors were also identified. With this information, zoos can prioritize modifications to their facilities and animal management programs to create an environment that encourages zoo elephants to express walking and recumbence behavior, should they choose to do so. This work is one component of the Elephant Welfare Project, the largest zoo animal welfare project ever undertaken, and is unprecedented in both scope and scale. The project was funded by the Institute of Museum and Library Services (IMLS), an independent, U.S., federal, grant-making agency that supports libraries, museums, and zoos. At the time of this writing, the first manuscripts from this project are being submitted to academic journals. These papers will describe the prevalence and distribution of a variety of elephant behaviors and welfare indicators, serve as a benchmark for future elephant welfare studies, and aid in decision making with regard to best practices in elephant management. Title: Applying GPS and Accelerometers to the Study of African Savanna (Loxodonta africana) and Asian Elephant (Elephas maximus) Welfare in Zoos Author: Holdgate, Matthew Robert Year: 2015 African savanna elephants (Loxodonta africana) and Asian elephants (Elephas maximus) are a focus of welfare research in zoos due to their high intelligence, complex social structure, and sheer size. Due to these challenges, some argue that zoos are inherently incapable of providing appropriate care for elephants, while others believe that zoos can fulfill the needs of these species with improved husbandry. There is a general consensus from both within and outside of zoos, however, that zoos must improve their elephant programs or cease exhibiting these animals altogether. Now more than ever, applied research on zoo elephant welfare is needed to provide context for this debate. Researchers are interested in how far zoo elephants walk due to the potential health and welfare benefits of walking in these highly mobile species. Zoo researchers recently adopted GPS technology to study elephant walking, and preliminary evidence suggests that African elephants in large zoo exhibits walk distances that correspond with wild elephants under non-extreme conditions. However, data are limited from Asian elephants and from elephants in more typically-sized exhibits. In Chapter Two, I discuss important methodological considerations of utilizing GPS in a zoo environment, including an introduction to the technology, sources of error and mitigation, methods to improve GPS performance, and possible effects of GPS device attachment on animal behavior. This review shows GPS performance is adequate for tracking zoo elephant walking when proper methodological techniques are applied, and should serve as a useful reference for zoo researchers considering using GPS. In Chapter Three, I used GPS anklets to measure outdoor daily walking distance in 56 adult female African (n = 33) and Asian (n = 23) elephants housed in 30 zoos. I collected 259 days of data and found that elephants walked an average of 5.34 km/day with no significant difference between species. Multivariate regression models predicted that elephants with more dynamic feeding regimens (more diverse feeding types and frequencies; unscheduled feeding times) will walk more. Distance walked was also predicted to be higher in elephants that spend time in a greater number of different social groups. Distance walked was predicted to decline with age. Finally, I found a significant negative correlation between distance walked and nighttime space experience. The results of the analysis suggest that zoos that want to increase walking in their elephants need not rely solely on larger exhibits, but can increase walking by adding quality and complexity to exhibits. However, my results failed to establish a definitive link between walking distance and other validated measures of elephant welfare. Thus, the direct health and welfare benefits of walking in zoo elephants remain unresolved. Resting behaviors are an essential component of animal welfare, but have received little attention in zoological research. In Chapter Four, I used accelerometers in anklets to complete the first large-scale multi-species investigation of zoo elephant recumbence. I collected 344 days of data from 72 adult female African (n = 44) and Asian (n = 28) elephants at 40 zoos. I found that African elephants are recumbent an average of 2.14 hours/day, which is significantly less than Asian elephants at 3.22 hours/day. Multivariate regression models predicted that African elephant recumbence increases when they experience more space at night, and Asian elephant recumbence increases when they spend time housed alone. Both species showed a similar response to substrate, such that African elephants spending time on all-hard substrates are predicted to be recumbent less, while Asian elephants spending time on all-soft substrates are predicted to be recumbent more. The discovery that occasional non-recumbence is a common behavior in zoo elephants also introduces a new area of research that may have important animal welfare consequences. Finally, this study established that zoos should continue their efforts to replace hard substrate with soft substrate in order to provide zoo elephants with environments that facilitate recumbence. Overall, this work assessed walking and recumbence in zoo elephants, which will allow zoos to gauge the prevalence of these behaviors in their elephants as compared to the sub-population studied here. A variety of factors that are associated with these behaviors were also identified. With this information, zoos can prioritize modifications to their facilities and animal management programs to create an environment that encourages zoo elephants to express walking and recumbence behavior, should they choose to do so. This work is one component of the Elephant Welfare Project, the largest zoo animal welfare project ever undertaken, and is unprecedented in both scope and scale. The project was funded by the Institute of Museum and Library Services (IMLS), an independent, U.S., federal, grant-making agency that supports libraries, museums, and zoos. At the time of this writing, the first manuscripts from this project are being submitted to academic journals. These papers will describe the prevalence and distribution of a variety of elephant behaviors and welfare indicators, serve as a benchmark for future elephant welfare studies, and aid in decision making with regard to best practices in elephant management. Close

• 19. [Article] Development of a Steady-State River Hydrodynamic and Temperature Model Based on CE-QUAL-W2

  CE-QUAL-W2 is a 2-D hydrodynamic and water quality model that has been applied to reservoirs, lakes, river systems, and estuaries throughout the world. However, when this model is applied for shallow systems, ...

  Citation × Citation Citation Abstract Copy Title: Development of a Steady-State River Hydrodynamic and Temperature Model Based on CE-QUAL-W2 Author: Xu, Wenwei Year: 2014 CE-QUAL-W2 is a 2-D hydrodynamic and water quality model that has been applied to reservoirs, lakes, river systems, and estuaries throughout the world. However, when this model is applied for shallow systems, this model requires a long calculation time to maintain numerical stability, compared to applications of reservoirs or deeper river systems. To solve this problem, a new hydrodynamic and temperature model was built based on the framework of CE-QUAL-W2 but that allows for steady-state hydrodynamic computations. By calculating the hydrodynamics at steady-state, the time step for stability is relaxed and simulations can proceed at much higher time steps. The rest of the model framework is still used for water quality state variables, in this case, temperature. The algorithm used for computing the water surface elevation is Manning's equation. This thesis study is one part of the Willamette Water 2100 project (Santelmann et al., 2012), which examines hydrological, ecological, and human factors affecting water scarcity in the Willamette River Basin. This study included three stages: (1) Convert six existing CE-QUAL-W2 V3.1 models into a newer version: CE-QUAL-W2 V3.7. (2) Develop the steady-state model code in FORTRAN. (3) Test the steady-state model on three river systems in the Willamette River Basin at Year 2001 and 2002. The result proved that the steady-state model could reduce the computing time by 90% for river applications, while predicting dynamic river temperature with high accuracy at a two-minute time scale. This new model will be employed to simulate the future of the Willamette River System at a decadal or centennial timescales, addressing river temperature concerns and fish habitat issues. Title: Development of a Steady-State River Hydrodynamic and Temperature Model Based on CE-QUAL-W2 Author: Xu, Wenwei Year: 2014 CE-QUAL-W2 is a 2-D hydrodynamic and water quality model that has been applied to reservoirs, lakes, river systems, and estuaries throughout the world. However, when this model is applied for shallow systems, this model requires a long calculation time to maintain numerical stability, compared to applications of reservoirs or deeper river systems. To solve this problem, a new hydrodynamic and temperature model was built based on the framework of CE-QUAL-W2 but that allows for steady-state hydrodynamic computations. By calculating the hydrodynamics at steady-state, the time step for stability is relaxed and simulations can proceed at much higher time steps. The rest of the model framework is still used for water quality state variables, in this case, temperature. The algorithm used for computing the water surface elevation is Manning's equation. This thesis study is one part of the Willamette Water 2100 project (Santelmann et al., 2012), which examines hydrological, ecological, and human factors affecting water scarcity in the Willamette River Basin. This study included three stages: (1) Convert six existing CE-QUAL-W2 V3.1 models into a newer version: CE-QUAL-W2 V3.7. (2) Develop the steady-state model code in FORTRAN. (3) Test the steady-state model on three river systems in the Willamette River Basin at Year 2001 and 2002. The result proved that the steady-state model could reduce the computing time by 90% for river applications, while predicting dynamic river temperature with high accuracy at a two-minute time scale. This new model will be employed to simulate the future of the Willamette River System at a decadal or centennial timescales, addressing river temperature concerns and fish habitat issues. Close

• 20. [Article] Investigations of the Air-Water Interface: A Structural Analysis of Metallic Surface Films and Aquatic Surface Films by Comparative Microscopy

  The air-water interface is an important natural boundary layer that has been neglected as an area of environmental field research. This study establishes that comparative microscopy can be an effective ...

  Citation × Citation Citation Abstract Copy Title: Investigations of the Air-Water Interface: A Structural Analysis of Metallic Surface Films and Aquatic Surface Films by Comparative Microscopy Author: Smith, Randall William Year: 2015 The air-water interface is an important natural boundary layer that has been neglected as an area of environmental field research. This study establishes that comparative microscopy can be an effective environmental method, and establishes that the term metallic surface films, is a more accurate descriptor than iron oxide surface films. This research shows that surface films are complex, often with layered structure, serve as habitat for significant biota, and act as a point of mineralization to several transition metal elements including manganese, iron, copper, nickel and zinc. This study demonstrates that surface films form under several conditions and can have diverse morphology. Activity of biota, microbes, particularly diatoms, suggests that bacteria and cyanobacteria integrate into the film often in patches, represented by forms and casts. Analytical imaging is used to document and compare film morphology and structures, using scanning electron microscopy, photoemission electron microscopy and transmission electron microscopy with elemental analysis by energy dispersive spectroscopy to confirm the hypothesis. Instrument parameters and strengths are reviewed. Component layers of a copper/zinc film were used to confirm metallic layers and elemental distribution. Bacterial casts were used to confirm film interaction, and to show entrainment and enrichment of the film to incorporate autochthonous and allochthonous materials into the films themselves. Most samples were from Oregon selected sites, with some samples from Maryland and Barbados. Title: Investigations of the Air-Water Interface: A Structural Analysis of Metallic Surface Films and Aquatic Surface Films by Comparative Microscopy Author: Smith, Randall William Year: 2015 The air-water interface is an important natural boundary layer that has been neglected as an area of environmental field research. This study establishes that comparative microscopy can be an effective environmental method, and establishes that the term metallic surface films, is a more accurate descriptor than iron oxide surface films. This research shows that surface films are complex, often with layered structure, serve as habitat for significant biota, and act as a point of mineralization to several transition metal elements including manganese, iron, copper, nickel and zinc. This study demonstrates that surface films form under several conditions and can have diverse morphology. Activity of biota, microbes, particularly diatoms, suggests that bacteria and cyanobacteria integrate into the film often in patches, represented by forms and casts. Analytical imaging is used to document and compare film morphology and structures, using scanning electron microscopy, photoemission electron microscopy and transmission electron microscopy with elemental analysis by energy dispersive spectroscopy to confirm the hypothesis. Instrument parameters and strengths are reviewed. Component layers of a copper/zinc film were used to confirm metallic layers and elemental distribution. Bacterial casts were used to confirm film interaction, and to show entrainment and enrichment of the film to incorporate autochthonous and allochthonous materials into the films themselves. Most samples were from Oregon selected sites, with some samples from Maryland and Barbados. Close

• 21. [Article] Does Gender Matter? Human Elephant Conflict in Sri Lanka: A Gendered Analysis of Human Elephant Conflict and Natural Resource Management in a Rural Sri Lankan Village

  This study is a gendered analysis of natural resource management at the local scale of a poor rural Sri Lankan village in a conservation buffer zone. This village experiences destruction of forests and ...

  Citation × Citation Citation Abstract Copy Title: Does Gender Matter? Human Elephant Conflict in Sri Lanka: A Gendered Analysis of Human Elephant Conflict and Natural Resource Management in a Rural Sri Lankan Village Author: Griffin, Katherine Eileen Year: 2015 This study is a gendered analysis of natural resource management at the local scale of a poor rural Sri Lankan village in a conservation buffer zone. This village experiences destruction of forests and human elephant conflict. The objective of this study is to gain an in-depth knowledge of residents' use and understandings of environmental resources, and to investigate if gender helps shape these factors. This study relies on a social sustainability conceptual framework. It tracks participation of local women and men in natural resource management, and in conservation within and outside of the Bibile community. Local nongovernmental organizations focus on mitigating human elephant conflict and government policies influence particular farming practices. Unless socially and environmentally sustainable practices are developed, areas within and outside of the protected areas are not sustainable in their current state (Jayewardene 1998). Current interventions are failing to solve this problem in both rural communities and natural ecosystems, demonstrated most clearly by shrinking forest habitats and the frequency of human and elephant deaths (Bandara 2009). By broadening the analysis of natural resource management to examine possible social, economic, and political influences, my research examines how different resource management approaches might be filtered and reflected by variation in local residents' use and understanding of environmental resources. I suggest that gender, household decision-making, and equality are overlooked but potentially important aspects in the perception and implementation of natural resource management. Title: Does Gender Matter? Human Elephant Conflict in Sri Lanka: A Gendered Analysis of Human Elephant Conflict and Natural Resource Management in a Rural Sri Lankan Village Author: Griffin, Katherine Eileen Year: 2015 This study is a gendered analysis of natural resource management at the local scale of a poor rural Sri Lankan village in a conservation buffer zone. This village experiences destruction of forests and human elephant conflict. The objective of this study is to gain an in-depth knowledge of residents' use and understandings of environmental resources, and to investigate if gender helps shape these factors. This study relies on a social sustainability conceptual framework. It tracks participation of local women and men in natural resource management, and in conservation within and outside of the Bibile community. Local nongovernmental organizations focus on mitigating human elephant conflict and government policies influence particular farming practices. Unless socially and environmentally sustainable practices are developed, areas within and outside of the protected areas are not sustainable in their current state (Jayewardene 1998). Current interventions are failing to solve this problem in both rural communities and natural ecosystems, demonstrated most clearly by shrinking forest habitats and the frequency of human and elephant deaths (Bandara 2009). By broadening the analysis of natural resource management to examine possible social, economic, and political influences, my research examines how different resource management approaches might be filtered and reflected by variation in local residents' use and understanding of environmental resources. I suggest that gender, household decision-making, and equality are overlooked but potentially important aspects in the perception and implementation of natural resource management. Close

• 22. [Article] Developmental Mechanisms that Support Genome Stability and Embryonic Survival in Stress-tolerant Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i>

  In order to complete their life cycles, vertebrates require oxygen and water. However, environments are not always forgiving when it comes to constantly providing these basic needs for vertebrate life. ...

  Citation × Citation Citation Abstract Copy Title: Developmental Mechanisms that Support Genome Stability and Embryonic Survival in Stress-tolerant Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i> Author: Wagner, Josiah Tad Year: 2015 In order to complete their life cycles, vertebrates require oxygen and water. However, environments are not always forgiving when it comes to constantly providing these basic needs for vertebrate life. The annual killifish Austrofundulus limnaeus is possibly the most well described extremophile vertebrate and its embryos have been shown to tolerate extremes in oxygen, salinity, and water availability. This phenotype is likely a result of the annual killifish life history, which includes periods of temporary habitat desiccation and oxygen deprivation, and requires the production of stress-tolerant embryos that depress metabolism in a state of suspended animation, known as diapause. Over the past several decades, the basic morphology and physiology of annual killifish development has become better characterized. However, there are still basic cellular processes that remain to be described in annual killifish such as A. limnaeus. Specifically, changes in DNA structure, expression, and copy number are known to have profound impacts on the phenotype and survival of an organism. Little is known as to how A. limnaeus maintains genome integrity during cell stress, nor how the A. limnaeus nuclear and mitochondrial genomes may have evolved under the unpredictable conditions in which A. limnaeus thrive. Early annual killifish embryonic development is also characterized by a complete dispersion and subsequent reaggregation of embryonic blastomeres prior to formation of the embryonic axis. This unusual period of early development may provide a functional adaptation that allows annual killifish embryos to survive these extreme conditions. The overall goals of this project were to (1) characterize the ability of A. limnaeus to tolerate and repair DNA damage through enzymatic and developmental mechanisms, (2) to determine possible consequences of mitochondrial DNA sequence and copy number on the metabolism of A. limnaeus, and (3) to establish a draft genome of A. limnaeus for future comparative genome studies. The results of this project show that embryos of A. limnaeus have an impressive ability to survive and reverse high doses of DNA damage induced by ultraviolet-C (UV-C) radiation, especially when allowed to recover under photoreactivating light. Surprisingly, embryos that survived irradiation during blastomere dispersion phases were able to develop normally. Characterization of gene expression during embryonic development for genes important for axis formation and cellular differentiation suggests that A. limnaeus embryos may delay axis formation until several days after epiboly is complete, thus allowing time for cells that become damaged to be replaced by surrounding pluripotent cells. This outcome would represent first case of a developmental buffering stage in a vertebrate. A. limnaeus embryos are also unique in their mitochondrial response to anoxia. Whereas in other species the amount of mitochondrial DNA (mtDNA) copy number fluctuates following extremes in oxygen availability, A. limnaeus embryonic mtDNA remains stable. Additionally, characterization of the fully sequenced A. limnaeus mitochondrial genome reveals possible evolutionary adaptations that may have facilitated dormancy and anoxia tolerance when compared to other species within the Order Cyprinodontiformes. The final chapter of this project characterizes the draft genome of A. limnaeus and I provide evidence suggesting that epigenetic DNA methylation that may be involved in regulating diapause. Title: Developmental Mechanisms that Support Genome Stability and Embryonic Survival in Stress-tolerant Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i> Author: Wagner, Josiah Tad Year: 2015 In order to complete their life cycles, vertebrates require oxygen and water. However, environments are not always forgiving when it comes to constantly providing these basic needs for vertebrate life. The annual killifish Austrofundulus limnaeus is possibly the most well described extremophile vertebrate and its embryos have been shown to tolerate extremes in oxygen, salinity, and water availability. This phenotype is likely a result of the annual killifish life history, which includes periods of temporary habitat desiccation and oxygen deprivation, and requires the production of stress-tolerant embryos that depress metabolism in a state of suspended animation, known as diapause. Over the past several decades, the basic morphology and physiology of annual killifish development has become better characterized. However, there are still basic cellular processes that remain to be described in annual killifish such as A. limnaeus. Specifically, changes in DNA structure, expression, and copy number are known to have profound impacts on the phenotype and survival of an organism. Little is known as to how A. limnaeus maintains genome integrity during cell stress, nor how the A. limnaeus nuclear and mitochondrial genomes may have evolved under the unpredictable conditions in which A. limnaeus thrive. Early annual killifish embryonic development is also characterized by a complete dispersion and subsequent reaggregation of embryonic blastomeres prior to formation of the embryonic axis. This unusual period of early development may provide a functional adaptation that allows annual killifish embryos to survive these extreme conditions. The overall goals of this project were to (1) characterize the ability of A. limnaeus to tolerate and repair DNA damage through enzymatic and developmental mechanisms, (2) to determine possible consequences of mitochondrial DNA sequence and copy number on the metabolism of A. limnaeus, and (3) to establish a draft genome of A. limnaeus for future comparative genome studies. The results of this project show that embryos of A. limnaeus have an impressive ability to survive and reverse high doses of DNA damage induced by ultraviolet-C (UV-C) radiation, especially when allowed to recover under photoreactivating light. Surprisingly, embryos that survived irradiation during blastomere dispersion phases were able to develop normally. Characterization of gene expression during embryonic development for genes important for axis formation and cellular differentiation suggests that A. limnaeus embryos may delay axis formation until several days after epiboly is complete, thus allowing time for cells that become damaged to be replaced by surrounding pluripotent cells. This outcome would represent first case of a developmental buffering stage in a vertebrate. A. limnaeus embryos are also unique in their mitochondrial response to anoxia. Whereas in other species the amount of mitochondrial DNA (mtDNA) copy number fluctuates following extremes in oxygen availability, A. limnaeus embryonic mtDNA remains stable. Additionally, characterization of the fully sequenced A. limnaeus mitochondrial genome reveals possible evolutionary adaptations that may have facilitated dormancy and anoxia tolerance when compared to other species within the Order Cyprinodontiformes. The final chapter of this project characterizes the draft genome of A. limnaeus and I provide evidence suggesting that epigenetic DNA methylation that may be involved in regulating diapause. Close

• 23. [Article] Survivorship and Breeding Dispersal Patterns of a Migratory, Socially Monogamous Passerine; the Scissor-tailed Flycatcher (Tyrannus forficatus)

  Survivorship (the likelihood of survival from one year to the next) and breeding dispersal (movement between breeding seasons) exhibit considerable variability at both the inter- and intraspecific levels. ...

  Citation × Citation Citation Abstract Copy Title: Survivorship and Breeding Dispersal Patterns of a Migratory, Socially Monogamous Passerine; the Scissor-tailed Flycatcher (Tyrannus forficatus) Author: Becker, Adam John Year: 2016 Survivorship (the likelihood of survival from one year to the next) and breeding dispersal (movement between breeding seasons) exhibit considerable variability at both the inter- and intraspecific levels. Using eight years of data (2008-2015), from my study site in southwest Oklahoma, I characterized survivorship and breeding dispersal of the Scissor-tailed Flycatcher (Tyrannus forficatus) in a mixed-grass prairie ecoregion. My results suggest that estimated survivorship of Scissor-tailed Flycatchers is low, especially to the congeneric Eastern Kingbird (T. tyrannus), and was likely underestimated due to the tendency of Scissor-tailed Flycatchers to disperse long distances. Title: Survivorship and Breeding Dispersal Patterns of a Migratory, Socially Monogamous Passerine; the Scissor-tailed Flycatcher (Tyrannus forficatus) Author: Becker, Adam John Year: 2016 Survivorship (the likelihood of survival from one year to the next) and breeding dispersal (movement between breeding seasons) exhibit considerable variability at both the inter- and intraspecific levels. Using eight years of data (2008-2015), from my study site in southwest Oklahoma, I characterized survivorship and breeding dispersal of the Scissor-tailed Flycatcher (Tyrannus forficatus) in a mixed-grass prairie ecoregion. My results suggest that estimated survivorship of Scissor-tailed Flycatchers is low, especially to the congeneric Eastern Kingbird (T. tyrannus), and was likely underestimated due to the tendency of Scissor-tailed Flycatchers to disperse long distances. Close

• 24. [Article] Mechanisms of Adaptation in the Newly Invasive Species <i>Brachypodium sylvaticum</i> (Hudson) Beauv.

  It is common knowledge that invasive species cause worldwide ecological and economic damage, and are nearly impossible to eradicate. However, upon introduction to a novel environment, alien species should ...

  Citation × Citation Citation Abstract Copy Title: Mechanisms of Adaptation in the Newly Invasive Species <i>Brachypodium sylvaticum</i> (Hudson) Beauv. Author: Marchini, Gina Lola Year: 2015 It is common knowledge that invasive species cause worldwide ecological and economic damage, and are nearly impossible to eradicate. However, upon introduction to a novel environment, alien species should be the underdogs: They are present in small numbers, possess low genetic diversity, and have not adapted to the climate and competitors present in the new habitat. So, how are alien species able to invade an environment occupied by native species that have already adapted to the local environment? To discover some answers to this apparent paradox I conducted four ecological genetic studies that utilized the invasive species Brachypodium sylvaticum (Hudson) Beauv. to determine mechanisms contributing to adaptation and success in the novel habitat. The first study used simulations and experiments to test the hypothesis that genetic purging, the process where genetic load is reduced by selection against the recessive deleterious alleles expressed in the homozygous state, promotes invasive range expansion. I found that homozygous populations on B. sylvaticum's range periphery displayed lower inbreeding depression compared to heterozygous populations near introduction sites. Empirical tests with B. sylvaticum further demonstrate that purging of genetic load is a plausible scenario promoting range expansion during invasion. Next, I explored how the interaction between population genetic diversity and the environment contributed to the establishment and spread of Brachypodium sylvaticum. I found that nitrogen application increases both final size and shoot biomass for B. sylvaticum individuals from source populations with low HS levels to levels found in individuals from populations with high HS. A coefficient of relative competition intensity index (RCI) displayed reduced effects of interspecific competition on B. sylvaticum biomass in high nitrogen plots. Results show that elevated nitrogen deposition is a factor that increases establishment of introduced species with historically small effective population sizes. Thirdly, I investigated phenotypic differentiation during the establishment and range expansion of Brachypodium sylvaticum. Utilizing a novel approach, unique alleles were used to determine the genetic probability of contribution from native source regions to invasive regions. These probabilities were integrated into QST-FST comparisons to determine the influence of selection and genetic drift on twelve physiological and anatomical traits associated with drought stress. Phenotypic divergence greater than neutral expectations was found for five traits between native and invasive populations, indicating selective divergence. Results from this study show that the majority of divergence in B. sylvaticum occurred after introduction to the novel environment, but prior to invasive range expansion. The final chapter of my dissertation investigates the adaptive role of genetic differentiation and plasticity for Brachypodium sylvaticum invasion. Plasticity was measured across treatments of contrasting water availability. Linear and nonlinear selection gradients determined the effect of directional and quadratic selection on plasticity and genetic differentiation. Invasive trait divergence was a consequence of post-introduction selection leading to genetic differentiation, as there were no plastic responses to contrasting water availability for any measured traits. Genetic divergence of invasive plants was not consistently in the direction indicated by selection, suggesting limitations of selection that may be a consequence of physical constraints and/or tradeoffs between growth and abiotic tolerance. Results suggest that selection, rather than plasticity, is driving phenotypic change in the invaded environment. The combined volume of these studies contributes significantly to the field of invasion and plant biology by providing novel insights into the processes underlying range expansion, adaptation, and ultimately, evolution of introduced species. Title: Mechanisms of Adaptation in the Newly Invasive Species <i>Brachypodium sylvaticum</i> (Hudson) Beauv. Author: Marchini, Gina Lola Year: 2015 It is common knowledge that invasive species cause worldwide ecological and economic damage, and are nearly impossible to eradicate. However, upon introduction to a novel environment, alien species should be the underdogs: They are present in small numbers, possess low genetic diversity, and have not adapted to the climate and competitors present in the new habitat. So, how are alien species able to invade an environment occupied by native species that have already adapted to the local environment? To discover some answers to this apparent paradox I conducted four ecological genetic studies that utilized the invasive species Brachypodium sylvaticum (Hudson) Beauv. to determine mechanisms contributing to adaptation and success in the novel habitat. The first study used simulations and experiments to test the hypothesis that genetic purging, the process where genetic load is reduced by selection against the recessive deleterious alleles expressed in the homozygous state, promotes invasive range expansion. I found that homozygous populations on B. sylvaticum's range periphery displayed lower inbreeding depression compared to heterozygous populations near introduction sites. Empirical tests with B. sylvaticum further demonstrate that purging of genetic load is a plausible scenario promoting range expansion during invasion. Next, I explored how the interaction between population genetic diversity and the environment contributed to the establishment and spread of Brachypodium sylvaticum. I found that nitrogen application increases both final size and shoot biomass for B. sylvaticum individuals from source populations with low HS levels to levels found in individuals from populations with high HS. A coefficient of relative competition intensity index (RCI) displayed reduced effects of interspecific competition on B. sylvaticum biomass in high nitrogen plots. Results show that elevated nitrogen deposition is a factor that increases establishment of introduced species with historically small effective population sizes. Thirdly, I investigated phenotypic differentiation during the establishment and range expansion of Brachypodium sylvaticum. Utilizing a novel approach, unique alleles were used to determine the genetic probability of contribution from native source regions to invasive regions. These probabilities were integrated into QST-FST comparisons to determine the influence of selection and genetic drift on twelve physiological and anatomical traits associated with drought stress. Phenotypic divergence greater than neutral expectations was found for five traits between native and invasive populations, indicating selective divergence. Results from this study show that the majority of divergence in B. sylvaticum occurred after introduction to the novel environment, but prior to invasive range expansion. The final chapter of my dissertation investigates the adaptive role of genetic differentiation and plasticity for Brachypodium sylvaticum invasion. Plasticity was measured across treatments of contrasting water availability. Linear and nonlinear selection gradients determined the effect of directional and quadratic selection on plasticity and genetic differentiation. Invasive trait divergence was a consequence of post-introduction selection leading to genetic differentiation, as there were no plastic responses to contrasting water availability for any measured traits. Genetic divergence of invasive plants was not consistently in the direction indicated by selection, suggesting limitations of selection that may be a consequence of physical constraints and/or tradeoffs between growth and abiotic tolerance. Results suggest that selection, rather than plasticity, is driving phenotypic change in the invaded environment. The combined volume of these studies contributes significantly to the field of invasion and plant biology by providing novel insights into the processes underlying range expansion, adaptation, and ultimately, evolution of introduced species. Close

• 25. [Article] Effects of Selective Logging and Roads on Instream Fine Sediments and Macroinvertebrate Assemblages in the Clackamas Basin, Oregon

  Logging and associated skid trails, haul routes, and roads can have significant impacts on the magnitude and timing of sediments in streams in forested watersheds. Loss of vegetation, soil compaction, ...

  Citation × Citation Citation Abstract Copy Title: Effects of Selective Logging and Roads on Instream Fine Sediments and Macroinvertebrate Assemblages in the Clackamas Basin, Oregon Author: Hood, Paula Elizabeth Year: 2015 Logging and associated skid trails, haul routes, and roads can have significant impacts on the magnitude and timing of sediments in streams in forested watersheds. Loss of vegetation, soil compaction, use of heavy logging equipment, and alteration of natural hydrologic patterns within the watershed can increase landslide rates, create erosion, and generate fine sediments. Selective logging, also called thinning, is a logging practice that leaves some trees within sale units unharvested. The ecological impacts of thinning on stream ecosystems are not fully understood and need further study. My hypothesis was that macroinvertebrate assemblages would be different in streams in non-reference areas that contain recent selective logging compared to streams in reference areas, and in downstream vs. upstream of selective logging units. I also hypothesized that selective logging and high road densities would be associated with increased instream fine sediments. I sampled water quality parameters and macroinvertebrates in three managed and three reference streams in the Clackamas River Basin during the field season of 2013. Turbidity, temperature, dissolved oxygen, conductivity, total dissolved solids (TDS), suspended sediment concentrations (SSC), and flow were sampled at each stream on four occasions during spring through early fall. Macroinvertebrates were sampled once in late summer or early fall. EPA rapid habitat assessments, canopy cover, pebble counts, embeddedness, and slope were also determined. Water quality parameters and macroinvertebrate indices in reference and non-reference sites were compared using t-tests, Welch's tests, or rank based equivalents. Macroinvertebrate assemblage patterns and associated environmental variables were characterized using non-metric multidimensional scaling (NMDS) ordination plots and envfit overlays. Macroinvertebrates had higher abundance and taxa richness in non-reference streams, and indices suggested poorer water quality in non-reference streams. Non-reference streams had a lower percentage of shredders and a higher portion of gatherer-collectors. Associations between land use, fine sediments, and changes in macroinvertebrate metrics and community assemblages were apparent at the reference vs. non-reference scale. It is likely that macroinvertebrates are responding, at least in part, to past logging and high road densities in non-reference streams. Fewer indications were found that recent logging may be affecting water quality and macroinvertebrates. Pearson's correlation coefficients show that the percent of recent logging upstream of study sites was correlated with several measures of fine sediments, suggesting that recent land use may be affecting sediment levels at the subwatershed scale. Stream temperatures increased from upstream to downstream in non-reference sites. Though no continual stream temperature data were collected in this study, the history of continuing temperature standard exceedances in the area suggest that further investigation of how selective logging may be affecting stream temperature and other water quality parameters in the Clackamas Basin is warranted. No other differences in water quality parameters were found from upstream to downstream, possibly because water quality was sufficiently protected, or because signals from land use impacts may be obscured by a several factors, including upstream confounding factors such as roads and past logging, and natural variability. Title: Effects of Selective Logging and Roads on Instream Fine Sediments and Macroinvertebrate Assemblages in the Clackamas Basin, Oregon Author: Hood, Paula Elizabeth Year: 2015 Logging and associated skid trails, haul routes, and roads can have significant impacts on the magnitude and timing of sediments in streams in forested watersheds. Loss of vegetation, soil compaction, use of heavy logging equipment, and alteration of natural hydrologic patterns within the watershed can increase landslide rates, create erosion, and generate fine sediments. Selective logging, also called thinning, is a logging practice that leaves some trees within sale units unharvested. The ecological impacts of thinning on stream ecosystems are not fully understood and need further study. My hypothesis was that macroinvertebrate assemblages would be different in streams in non-reference areas that contain recent selective logging compared to streams in reference areas, and in downstream vs. upstream of selective logging units. I also hypothesized that selective logging and high road densities would be associated with increased instream fine sediments. I sampled water quality parameters and macroinvertebrates in three managed and three reference streams in the Clackamas River Basin during the field season of 2013. Turbidity, temperature, dissolved oxygen, conductivity, total dissolved solids (TDS), suspended sediment concentrations (SSC), and flow were sampled at each stream on four occasions during spring through early fall. Macroinvertebrates were sampled once in late summer or early fall. EPA rapid habitat assessments, canopy cover, pebble counts, embeddedness, and slope were also determined. Water quality parameters and macroinvertebrate indices in reference and non-reference sites were compared using t-tests, Welch's tests, or rank based equivalents. Macroinvertebrate assemblage patterns and associated environmental variables were characterized using non-metric multidimensional scaling (NMDS) ordination plots and envfit overlays. Macroinvertebrates had higher abundance and taxa richness in non-reference streams, and indices suggested poorer water quality in non-reference streams. Non-reference streams had a lower percentage of shredders and a higher portion of gatherer-collectors. Associations between land use, fine sediments, and changes in macroinvertebrate metrics and community assemblages were apparent at the reference vs. non-reference scale. It is likely that macroinvertebrates are responding, at least in part, to past logging and high road densities in non-reference streams. Fewer indications were found that recent logging may be affecting water quality and macroinvertebrates. Pearson's correlation coefficients show that the percent of recent logging upstream of study sites was correlated with several measures of fine sediments, suggesting that recent land use may be affecting sediment levels at the subwatershed scale. Stream temperatures increased from upstream to downstream in non-reference sites. Though no continual stream temperature data were collected in this study, the history of continuing temperature standard exceedances in the area suggest that further investigation of how selective logging may be affecting stream temperature and other water quality parameters in the Clackamas Basin is warranted. No other differences in water quality parameters were found from upstream to downstream, possibly because water quality was sufficiently protected, or because signals from land use impacts may be obscured by a several factors, including upstream confounding factors such as roads and past logging, and natural variability. Close

• 26. [Article] Using Landsat TM Imagery to Monitor Vegetation Change Following Flow Restoration to the Lower Owens River, California

  Rehabilitating river corridors to restore valuable riparian habitat consumes significant resources from both governments and private companies. Given these considerable expenditures, it is important to ...

  Citation × Citation Citation Abstract Copy Title: Using Landsat TM Imagery to Monitor Vegetation Change Following Flow Restoration to the Lower Owens River, California Author: Bross, Lesley Crandell Year: 2015 Rehabilitating river corridors to restore valuable riparian habitat consumes significant resources from both governments and private companies. Given these considerable expenditures, it is important to monitor the progress of such projects. This study evaluated the utility of using Landsat Thematic Mapper remotely-sensed data from 2002 and 2009 to monitor vegetation change induced by instream flow restoration to the Lower Owens River in central California. This study compared the results of an unsupervised classification with an NDVI threshold classification to appraise the resources required and effectiveness of each analysis method. The results were inspected by creating standard remote sensing accuracy error matrices and by correlating landscape pattern metrics with bird indicator species. Both sets of classified maps show a noticeable increase in riparian vegetation in the study area following flow restoration in 2006, indicating an improvement of the quality of bird habitat. The study concluded that analyzing vegetation change using the unsupervised classification technique required more effort, expert knowledge, and supplementary data than using the NDVI threshold method. If these prerequisites are met, the output from the unsupervised classification process produces a more precise map of land cover change than the NDVI threshold method. However, if an analyst is lacking either resources or ground verification data, the NDVI threshold technique is capable of providing a generalized, but still valid evaluation of vegetation change. This conclusion is supported by higher correlations between indicator bird species under the unsupervised classification method than were found with the NDVI threshold method. Title: Using Landsat TM Imagery to Monitor Vegetation Change Following Flow Restoration to the Lower Owens River, California Author: Bross, Lesley Crandell Year: 2015 Rehabilitating river corridors to restore valuable riparian habitat consumes significant resources from both governments and private companies. Given these considerable expenditures, it is important to monitor the progress of such projects. This study evaluated the utility of using Landsat Thematic Mapper remotely-sensed data from 2002 and 2009 to monitor vegetation change induced by instream flow restoration to the Lower Owens River in central California. This study compared the results of an unsupervised classification with an NDVI threshold classification to appraise the resources required and effectiveness of each analysis method. The results were inspected by creating standard remote sensing accuracy error matrices and by correlating landscape pattern metrics with bird indicator species. Both sets of classified maps show a noticeable increase in riparian vegetation in the study area following flow restoration in 2006, indicating an improvement of the quality of bird habitat. The study concluded that analyzing vegetation change using the unsupervised classification technique required more effort, expert knowledge, and supplementary data than using the NDVI threshold method. If these prerequisites are met, the output from the unsupervised classification process produces a more precise map of land cover change than the NDVI threshold method. However, if an analyst is lacking either resources or ground verification data, the NDVI threshold technique is capable of providing a generalized, but still valid evaluation of vegetation change. This conclusion is supported by higher correlations between indicator bird species under the unsupervised classification method than were found with the NDVI threshold method. Close

• 27. [Article] Chronology and Ecology of Late Pleistocene Megafauna in the Northern Willamette Valley, Oregon

  Since the mid-19th century, western Oregon's Willamette Valley has been a source of remains from a wide variety of extinct megafauna. Few of these have been previously described or dated, but new chronologic ...

  Citation × Citation Citation Abstract Copy Title: Chronology and Ecology of Late Pleistocene Megafauna in the Northern Willamette Valley, Oregon Author: Gilmour, Daniel McGowan, Butler, Virginia L., O'Conner, Jim E., Byrd Davis, Edward, Culleton, Brendan J., Kennett, Douglas J., Hodgins, Gregory Year: 2014 Since the mid-19th century, western Oregon's Willamette Valley has been a source of remains from a wide variety of extinct megafauna. Few of these have been previously described or dated, but new chronologic and isotopic analyses in conjunction with updated evaluations of stratigraphic context provide substantial new information on the species present, timing of losses, and paleoenvironmental conditions. Using subfossil material from the northern valley, we use AMS radiocarbon dating, stable isotope (δ13C and δ15N) analyses, and taxonomic dietary specialization and habitat preferences to reconstruct environments and to develop a local chronology of events that we then compare with continental and regional archaeological and paleoenvironmental data. Analysis of twelve bone specimens demonstrates the presence of bison, mammoth, horse, sloth, and mastodon from ~15,000–13,000 cal yr BP. The latest ages coincide with changing regional climate corresponding to the onset of the Younger Dryas. It is suggested that cooling conditions led to increased forest cover, and, along with river aggradation, reduced the area of preferred habitat for the larger bodied herbivores, which contributed to the demise of local megafauna. Archaeological evidence for megafauna–human interactions in the Pacific Northwest is scarce, limiting our ability to address the human role in causing extinction. Title: Chronology and Ecology of Late Pleistocene Megafauna in the Northern Willamette Valley, Oregon Author: Gilmour, Daniel McGowan, Butler, Virginia L., O'Conner, Jim E., Byrd Davis, Edward, Culleton, Brendan J., Kennett, Douglas J., Hodgins, Gregory Year: 2014 Since the mid-19th century, western Oregon's Willamette Valley has been a source of remains from a wide variety of extinct megafauna. Few of these have been previously described or dated, but new chronologic and isotopic analyses in conjunction with updated evaluations of stratigraphic context provide substantial new information on the species present, timing of losses, and paleoenvironmental conditions. Using subfossil material from the northern valley, we use AMS radiocarbon dating, stable isotope (δ13C and δ15N) analyses, and taxonomic dietary specialization and habitat preferences to reconstruct environments and to develop a local chronology of events that we then compare with continental and regional archaeological and paleoenvironmental data. Analysis of twelve bone specimens demonstrates the presence of bison, mammoth, horse, sloth, and mastodon from ~15,000–13,000 cal yr BP. The latest ages coincide with changing regional climate corresponding to the onset of the Younger Dryas. It is suggested that cooling conditions led to increased forest cover, and, along with river aggradation, reduced the area of preferred habitat for the larger bodied herbivores, which contributed to the demise of local megafauna. Archaeological evidence for megafauna–human interactions in the Pacific Northwest is scarce, limiting our ability to address the human role in causing extinction. Close

• 28. [Article] Factors Affecting Snowy Plover Chick Survival in a Managed Population

  Understanding survival of precocial chicks in the period immediately following hatching has important conservation implications because population growth is often sensitive to post-hatching survival. We ...

  Citation × Citation Citation Abstract Copy Title: Factors Affecting Snowy Plover Chick Survival in a Managed Population Author: Dinsmore, Stephen J., Gaines, Eleanor P., Pearson, Scott F., Lauten, David J., Castelein, Kathleen J. Year: 2017 Understanding survival of precocial chicks in the period immediately following hatching has important conservation implications because population growth is often sensitive to post-hatching survival. We studied federally threatened Western Snowy Plover (Charadrius nivosus nivosus) broods at the northern limit of their range in coastal Oregon (n ¼ 1,157) and Washington (n ¼ 84) from 1991 to 2011 in an attempt to understand seasonal, annual, and spatial patterns of chick survival. In Oregon, plover chick survival increased with age, varied between sites, and was greater at sites with predator management. The mean probability of surviving from hatch to fledging at 28 days of age in Oregon was 0.57 (95% CI: 0.50, 0.63). In Washington, where predator management was not employed, we conducted separate analyses using individually banded and unbanded chicks and results indicated that survival generally increased with chick age. The mean estimated probability of surviving from hatch to fledging at 28 days of age in Washington was 0.27 (95% CI: 0.20, 0.35) for individually banded chicks when perfect detection was assumed. This probability increased to 0.67 (95% CI: 0.41, 0.83) when we analyzed unbanded chicks and included detection probability. Our findings confirm the importance of considering age effects in the survival of Snowy Plover chicks and raise questions about the validity of assuming perfect detection of plover chicks during brood checks. This work also highlights the benefit of predator management on chick survival. Title: Factors Affecting Snowy Plover Chick Survival in a Managed Population Author: Dinsmore, Stephen J., Gaines, Eleanor P., Pearson, Scott F., Lauten, David J., Castelein, Kathleen J. Year: 2017 Understanding survival of precocial chicks in the period immediately following hatching has important conservation implications because population growth is often sensitive to post-hatching survival. We studied federally threatened Western Snowy Plover (Charadrius nivosus nivosus) broods at the northern limit of their range in coastal Oregon (n ¼ 1,157) and Washington (n ¼ 84) from 1991 to 2011 in an attempt to understand seasonal, annual, and spatial patterns of chick survival. In Oregon, plover chick survival increased with age, varied between sites, and was greater at sites with predator management. The mean probability of surviving from hatch to fledging at 28 days of age in Oregon was 0.57 (95% CI: 0.50, 0.63). In Washington, where predator management was not employed, we conducted separate analyses using individually banded and unbanded chicks and results indicated that survival generally increased with chick age. The mean estimated probability of surviving from hatch to fledging at 28 days of age in Washington was 0.27 (95% CI: 0.20, 0.35) for individually banded chicks when perfect detection was assumed. This probability increased to 0.67 (95% CI: 0.41, 0.83) when we analyzed unbanded chicks and included detection probability. Our findings confirm the importance of considering age effects in the survival of Snowy Plover chicks and raise questions about the validity of assuming perfect detection of plover chicks during brood checks. This work also highlights the benefit of predator management on chick survival. Close

• 29. [Article] Investigations of Larval Pacific Lamprey Entosphenus tridentatus Osmotic Stress Tolerance and Occurrence in a Tidally-Influenced Estuarine Stream

  Pacific lamprey is a culturally valuable species to indigenous people, and has significant ecological importance in freshwater and marine ecosystems. Over the past several decades, constrictions in range ...

  Citation × Citation Citation Abstract Copy Title: Investigations of Larval Pacific Lamprey Entosphenus tridentatus Osmotic Stress Tolerance and Occurrence in a Tidally-Influenced Estuarine Stream Author: Silver, Gregory Shell Year: 2015 Pacific lamprey is a culturally valuable species to indigenous people, and has significant ecological importance in freshwater and marine ecosystems. Over the past several decades, constrictions in range and reductions in Pacific lamprey abundance have been observed in Western North America, and may be indicators of range-wide declines. In the face of declining populations, the U.S. Fish and Wildlife Service has partnered with tribal, state, federal, and local entities to implement a regional Pacific lamprey conservation agreement aimed at reducing threats to Pacific lamprey and improving their habitats and population status. Research needs identified in the conservation agreement include assessing larval Pacific lamprey occupancy and distribution, habitat requirements, and the limiting factors of larval distribution in the freshwater ecosystem. As part of the effort to address these knowledge gaps, we investigated the potential for larval lampreys to occur in tidally-influenced estuarine environments. Research of this type may be valuable for future conservation, management or recovery efforts of Pacific lamprey throughout its range. We employed a two-phased approach, consisting of laboratory and field components to address our aims. We first conducted a series of controlled laboratory experiments to evaluate osmotic stress tolerance and osmoregulatory status of larval Pacific lamprey exposed to a range of (1) fixed salinity in various dilutions of saltwater and (2) oscillating salinity treatments designed to simulate tidal activity. Tolerance was assessed by monitoring and comparing survival of larvae in various treatments through 96 h. Osmoregulatory status was assessed by quantifying and comparing total body water content, plasma osmolality, and plasma cation (i.e., sodium) concentrations among larvae surviving various treatments. In fixed salinity experiments, 100% survival was observed in 0‰, 6‰, 8‰ and 10‰ through 96 h, while 0% survival was observed through 48 h in 12‰, 30 h in 15‰, and 12 h in 25‰ and 35‰. In oscillating salinity experiments, on the other hand, a significant increase in survival (100%) was observed through 96 h in treatments that oscillated between 12‰ and 0‰ (freshwater) at about 6 h intervals versus fixed 12‰ salinity experiments. A significant increase in survival also occurred in oscillating 15‰ treatments (60%) versus fixed 15‰ through 96 h. Linear regression analysis indicated higher environmental salinity in laboratory experiments was significantly related to increases in plasma osmolality and plasma sodium (the most abundant osmotically active plasma cation) concentrations, and concurrent decreases in total body water content among larvae that survived various treatments. Tidal oscillations in salinity appeared to temper the desiccating effects of salinity, as changes in body water content and sodium ion concentration were less abrupt than fixed salinity treatments. These results suggest larvae cannot osmoregulate in hyperosmotic environments, but are able to tolerate some fixed and oscillating hyperosmotic salinity exposure. Consequently, larvae may be able to occur in certain areas of estuaries, such as oligohaline habitats that are characterized by low levels of salinity. Experimental results were used, in part, to guide larval sampling in a tidally-influenced habitat. Occurrence of larval Pacific lamprey and Lampetra spp. (western brook and river lampreys) was subsequently investigated across a gradient of salinity in Ellsworth Creek (Pacific County, Washington) by electrofishing. Larval Pacific and Lampetra spp. were detected within an approximately 300 m long tidally-influenced segment of the study area. Salinity monitoring was conducted in six tidally-influenced reaches where larvae were detected for up to 14 d following electrofishing. Maximum tidal cycle salinity exceeded 15 ppt during 52% to 80% of tidal cycles within tidally-influenced reaches where larvae were detected. These results suggest potential for larval lamprey to occur in certain portions of tidal estuaries. However, long-term residence of larvae in tidally-influenced habitats and whether larvae are able to subsequently survive, grow, transform, and out-migrate is not known and requires further study. Given the potential for tidally-influenced habitats to be occupied by larvae, assessments of larval occurrence in other areas, such as the lower Columbia River, may be warranted. Knowledge of larval lamprey distribution in estuarine environments may be valuable for habitat restoration, and mitigating potential impacts from dredging and other human disturbances. Title: Investigations of Larval Pacific Lamprey Entosphenus tridentatus Osmotic Stress Tolerance and Occurrence in a Tidally-Influenced Estuarine Stream Author: Silver, Gregory Shell Year: 2015 Pacific lamprey is a culturally valuable species to indigenous people, and has significant ecological importance in freshwater and marine ecosystems. Over the past several decades, constrictions in range and reductions in Pacific lamprey abundance have been observed in Western North America, and may be indicators of range-wide declines. In the face of declining populations, the U.S. Fish and Wildlife Service has partnered with tribal, state, federal, and local entities to implement a regional Pacific lamprey conservation agreement aimed at reducing threats to Pacific lamprey and improving their habitats and population status. Research needs identified in the conservation agreement include assessing larval Pacific lamprey occupancy and distribution, habitat requirements, and the limiting factors of larval distribution in the freshwater ecosystem. As part of the effort to address these knowledge gaps, we investigated the potential for larval lampreys to occur in tidally-influenced estuarine environments. Research of this type may be valuable for future conservation, management or recovery efforts of Pacific lamprey throughout its range. We employed a two-phased approach, consisting of laboratory and field components to address our aims. We first conducted a series of controlled laboratory experiments to evaluate osmotic stress tolerance and osmoregulatory status of larval Pacific lamprey exposed to a range of (1) fixed salinity in various dilutions of saltwater and (2) oscillating salinity treatments designed to simulate tidal activity. Tolerance was assessed by monitoring and comparing survival of larvae in various treatments through 96 h. Osmoregulatory status was assessed by quantifying and comparing total body water content, plasma osmolality, and plasma cation (i.e., sodium) concentrations among larvae surviving various treatments. In fixed salinity experiments, 100% survival was observed in 0‰, 6‰, 8‰ and 10‰ through 96 h, while 0% survival was observed through 48 h in 12‰, 30 h in 15‰, and 12 h in 25‰ and 35‰. In oscillating salinity experiments, on the other hand, a significant increase in survival (100%) was observed through 96 h in treatments that oscillated between 12‰ and 0‰ (freshwater) at about 6 h intervals versus fixed 12‰ salinity experiments. A significant increase in survival also occurred in oscillating 15‰ treatments (60%) versus fixed 15‰ through 96 h. Linear regression analysis indicated higher environmental salinity in laboratory experiments was significantly related to increases in plasma osmolality and plasma sodium (the most abundant osmotically active plasma cation) concentrations, and concurrent decreases in total body water content among larvae that survived various treatments. Tidal oscillations in salinity appeared to temper the desiccating effects of salinity, as changes in body water content and sodium ion concentration were less abrupt than fixed salinity treatments. These results suggest larvae cannot osmoregulate in hyperosmotic environments, but are able to tolerate some fixed and oscillating hyperosmotic salinity exposure. Consequently, larvae may be able to occur in certain areas of estuaries, such as oligohaline habitats that are characterized by low levels of salinity. Experimental results were used, in part, to guide larval sampling in a tidally-influenced habitat. Occurrence of larval Pacific lamprey and Lampetra spp. (western brook and river lampreys) was subsequently investigated across a gradient of salinity in Ellsworth Creek (Pacific County, Washington) by electrofishing. Larval Pacific and Lampetra spp. were detected within an approximately 300 m long tidally-influenced segment of the study area. Salinity monitoring was conducted in six tidally-influenced reaches where larvae were detected for up to 14 d following electrofishing. Maximum tidal cycle salinity exceeded 15 ppt during 52% to 80% of tidal cycles within tidally-influenced reaches where larvae were detected. These results suggest potential for larval lamprey to occur in certain portions of tidal estuaries. However, long-term residence of larvae in tidally-influenced habitats and whether larvae are able to subsequently survive, grow, transform, and out-migrate is not known and requires further study. Given the potential for tidally-influenced habitats to be occupied by larvae, assessments of larval occurrence in other areas, such as the lower Columbia River, may be warranted. Knowledge of larval lamprey distribution in estuarine environments may be valuable for habitat restoration, and mitigating potential impacts from dredging and other human disturbances. Close

• 30. [Article] Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community

  With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, ...

  Citation × Citation Citation Abstract Copy Title: Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community Author: Gonsalves, Sydney Marie Year: 2016 With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed the literature on urban invertebrate communities and diversity to better understand the role of green roofs in providing habitat in the context of the larger urban mosaic. My review concluded that, while other factors such as surrounding land use and connectivity are also important to specific invertebrate taxa, local habitat variables contribute substantially to the structure and diversity of urban invertebrate communities. The importance of local habitat variables in urban green spaces and strong support for the habitat complexity hypothesis in a number of other ecosystems has led to proposals that "biodiverse" roofs--those intentionally designed with varied substrate depth, greater plant diversity, or added elements such as logs or stones--would support greater invertebrate diversity, but there is currently limited peer reviewed data to support this. In order to address the habitat complexity hypothesis in the context of green roofs, in the second part of this study I surveyed three roofs designed primarily for stormwater management, three biodiverse roofs, and five ground-level green spaces, from March until September of 2014 in the Portland metropolitan area. Beetles (Coleoptera) were sampled bi-weekly as representatives of total species diversity. Biodiverse roofs had greater richness, abundance, and diversity of beetle species compared to stormwater roofs, but were not more diverse than ground sites. Both biodiverse roofs and ground sites had approximately 20% native beetle species while stormwater roofs had only 5%. Functional diversity was also higher on biodiverse roofs with an average of seven trophic groups represented, while stormwater roofs averaged only three. Ground sites, biodiverse roofs, and stormwater roofs each grouped distinctively in terms of beetle community composition and biodiverse roof communities were found to be positively correlated with roof age, percent plant cover, average plant height, and plant species richness. These results support the findings of previous studies on the importance of local variables in structuring urban invertebrate communities and suggest that biodiverse design can reliably increase greenroof diversity, with the caution that they remain no replacement for ground level conservation. Title: Green Roofs and Urban Biodiversity: Their Role as Invertebrate Habitat and the Effect of Design on Beetle Community Author: Gonsalves, Sydney Marie Year: 2016 With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed the literature on urban invertebrate communities and diversity to better understand the role of green roofs in providing habitat in the context of the larger urban mosaic. My review concluded that, while other factors such as surrounding land use and connectivity are also important to specific invertebrate taxa, local habitat variables contribute substantially to the structure and diversity of urban invertebrate communities. The importance of local habitat variables in urban green spaces and strong support for the habitat complexity hypothesis in a number of other ecosystems has led to proposals that "biodiverse" roofs--those intentionally designed with varied substrate depth, greater plant diversity, or added elements such as logs or stones--would support greater invertebrate diversity, but there is currently limited peer reviewed data to support this. In order to address the habitat complexity hypothesis in the context of green roofs, in the second part of this study I surveyed three roofs designed primarily for stormwater management, three biodiverse roofs, and five ground-level green spaces, from March until September of 2014 in the Portland metropolitan area. Beetles (Coleoptera) were sampled bi-weekly as representatives of total species diversity. Biodiverse roofs had greater richness, abundance, and diversity of beetle species compared to stormwater roofs, but were not more diverse than ground sites. Both biodiverse roofs and ground sites had approximately 20% native beetle species while stormwater roofs had only 5%. Functional diversity was also higher on biodiverse roofs with an average of seven trophic groups represented, while stormwater roofs averaged only three. Ground sites, biodiverse roofs, and stormwater roofs each grouped distinctively in terms of beetle community composition and biodiverse roof communities were found to be positively correlated with roof age, percent plant cover, average plant height, and plant species richness. These results support the findings of previous studies on the importance of local variables in structuring urban invertebrate communities and suggest that biodiverse design can reliably increase greenroof diversity, with the caution that they remain no replacement for ground level conservation. Close

• 31. [Article] Tree Cover Mapping for Assessing Greater Sage-Grouse Habitat in Eastern Oregon

  We used a predictive model to map canopy cover of vegetation over seven feet in height ("tall woody vegetation") at 30-meter resolution over nearly 29 million acres within and adjacent to the range of ...

  Citation × Citation Citation Abstract Copy Title: Tree Cover Mapping for Assessing Greater Sage-Grouse Habitat in Eastern Oregon Author: Nielsen, Eric M., Noone, Matthew D. Year: 2014 We used a predictive model to map canopy cover of vegetation over seven feet in height ("tall woody vegetation") at 30-meter resolution over nearly 29 million acres within and adjacent to the range of the greater sage-grouse in Oregon (Figure 1). Texture measures computed at various resolutions from color-infrared aerial photography provided the main source of predictor data used to produce the map. Canopy cover was treated as a categorical variable using six cover classes: absent (cover class C0), present at less than 4% (C1), 4 – 10% (C2), 10 – 20% (C3), 20 – 50% (C4), and 50% and over (C5). The map is referenced to conditions in the years 2011 and 2012. Although the specific target of the mapping was western juniper (Juniperus occidentalis), our reference data did not permit separating juniper from other tall woody vegetation during the predictive modeling process. The majority of the tall woody vegetation within the project area is western juniper. However, in high elevation regions, riparian, wetland, and residential areas, other vegetation is occasionally represented. The methodology discussed here produces raw modeled data. It is recommended that prior to use in most applications this raw tree cover product be additionally filtered or masked to eliminate false detections which often occur adjacent to agricultural areas and roads. For species-specific applications, an additional modeling phase is necessary to either eliminate tree cover detections likely to be species other than the target, or to model species importance values associated with each tree occurrence. Title: Tree Cover Mapping for Assessing Greater Sage-Grouse Habitat in Eastern Oregon Author: Nielsen, Eric M., Noone, Matthew D. Year: 2014 We used a predictive model to map canopy cover of vegetation over seven feet in height ("tall woody vegetation") at 30-meter resolution over nearly 29 million acres within and adjacent to the range of the greater sage-grouse in Oregon (Figure 1). Texture measures computed at various resolutions from color-infrared aerial photography provided the main source of predictor data used to produce the map. Canopy cover was treated as a categorical variable using six cover classes: absent (cover class C0), present at less than 4% (C1), 4 – 10% (C2), 10 – 20% (C3), 20 – 50% (C4), and 50% and over (C5). The map is referenced to conditions in the years 2011 and 2012. Although the specific target of the mapping was western juniper (Juniperus occidentalis), our reference data did not permit separating juniper from other tall woody vegetation during the predictive modeling process. The majority of the tall woody vegetation within the project area is western juniper. However, in high elevation regions, riparian, wetland, and residential areas, other vegetation is occasionally represented. The methodology discussed here produces raw modeled data. It is recommended that prior to use in most applications this raw tree cover product be additionally filtered or masked to eliminate false detections which often occur adjacent to agricultural areas and roads. For species-specific applications, an additional modeling phase is necessary to either eliminate tree cover detections likely to be species other than the target, or to model species importance values associated with each tree occurrence. Close

• 32. [Article] Demography of a Ground Nesting Bird in an Urban System: Are Populations Self-Sustaining?

  Urbanization poses threats to earth’s biota, and retention of remnant native habitat in protected areas within expanding urban boundaries may help alleviate threats to wildlife. However, it is unclear ...

  Citation × Citation Citation Abstract Copy Title: Demography of a Ground Nesting Bird in an Urban System: Are Populations Self-Sustaining? Author: Bartos Smith, Sarah, McKay, Jenny E., Richardson, Jennifer K., Shipley, Amy A., Murphy, Michael T. Year: 2016 Urbanization poses threats to earth’s biota, and retention of remnant native habitat in protected areas within expanding urban boundaries may help alleviate threats to wildlife. However, it is unclear for nearly all nonsynanthropic (i.e., not benefiting from an association with humans) species whether vital rates in urban habitats can sustain populations or if populations persist only through immigration from outside the urban boundary. We conducted a three-year study of spotted towhees (Aves: Pipilo maculatus) breeding in four undeveloped parks in Portland, OR, USA, to measure park-specific seasonal reproductive output (F) and annual adult survival (SA). We developed a stochastic model that combined F and SA with an estimate of first-year survival to measure population growth rate (λ) in all parks assumed to be closed to immigration. F differed among parks but SA did not. Relatively high F was possible because many pairs raised >1 brood/season. When combined with empirical estimates of survival through the 30-day period of post-fledging parental care (SD = 0.645), only 2 of 4 parks were self-sustaining (i.e., λ > 1.0). However, SD reflected substantial loss of fledglings to domestic cats (Felis catus). Assuming no loss to cats and either partial compensatory or additive mortality of fledglings substantially improved prospects of population persistence for declining (sink) populations. Moreover, allowing low levels of immigration to sinks reversed population declines in most parks even when vital rates were insufficient to maintain populations. Our results suggest that nonsynanthropic bird species can persist in urban landscapes, but also that offspring mortality in the post-fledging period may be a critical determinant of population viability. Title: Demography of a Ground Nesting Bird in an Urban System: Are Populations Self-Sustaining? Author: Bartos Smith, Sarah, McKay, Jenny E., Richardson, Jennifer K., Shipley, Amy A., Murphy, Michael T. Year: 2016 Urbanization poses threats to earth’s biota, and retention of remnant native habitat in protected areas within expanding urban boundaries may help alleviate threats to wildlife. However, it is unclear for nearly all nonsynanthropic (i.e., not benefiting from an association with humans) species whether vital rates in urban habitats can sustain populations or if populations persist only through immigration from outside the urban boundary. We conducted a three-year study of spotted towhees (Aves: Pipilo maculatus) breeding in four undeveloped parks in Portland, OR, USA, to measure park-specific seasonal reproductive output (F) and annual adult survival (SA). We developed a stochastic model that combined F and SA with an estimate of first-year survival to measure population growth rate (λ) in all parks assumed to be closed to immigration. F differed among parks but SA did not. Relatively high F was possible because many pairs raised >1 brood/season. When combined with empirical estimates of survival through the 30-day period of post-fledging parental care (SD = 0.645), only 2 of 4 parks were self-sustaining (i.e., λ > 1.0). However, SD reflected substantial loss of fledglings to domestic cats (Felis catus). Assuming no loss to cats and either partial compensatory or additive mortality of fledglings substantially improved prospects of population persistence for declining (sink) populations. Moreover, allowing low levels of immigration to sinks reversed population declines in most parks even when vital rates were insufficient to maintain populations. Our results suggest that nonsynanthropic bird species can persist in urban landscapes, but also that offspring mortality in the post-fledging period may be a critical determinant of population viability. Close

• 33. [Article] Reefscapes of Fear: Predation Risk and Reef Hetero-Geneity Interact to Shape Herbivore Foraging Behaviour

  Predators can exert strong direct and indirect effects on ecological communities by intimidating their prey. The nature of predation risk effects is often context dependent, but in some ecosystems these ...

  Citation × Citation Citation Abstract Copy Title: Reefscapes of Fear: Predation Risk and Reef Hetero-Geneity Interact to Shape Herbivore Foraging Behaviour Author: Catano, Laura B., Rojas, Maria C., Malossi, Ryan J., Peters, Joseph R., Heathaus, Michael R., Fourquren, James W., Burkepile, Deron E. Year: 2016 Predators can exert strong direct and indirect effects on ecological communities by intimidating their prey. The nature of predation risk effects is often context dependent, but in some ecosystems these contingencies are often overlooked. Risk effects are often not uniform across landscapes or among species. Indeed, they can vary widely across gradients of habitat complexity and with different prey escape tactics. These context dependencies may be especially important for ecosystems such as coral reefs that vary widely in habitat complexity and have species-rich predator and prey communities. With field experiments using predator decoys of the black grouper (Mycteroperca bonaci), we investigated how reef complexity interacts with predation risk to affect the foraging behaviour and herbivory rates of large herbivorous fishes (e.g. parrotfishes and surgeonfishes) across four coral reefs in the Florida Keys (USA). In both high and low complexity areas of the reef, we measured how herbivory changed with increasing distance from the predator decoy to examine how herbivorous fishes reconcile the conflicting demands of avoiding predation vs. foraging within a reefscape context. We show that with increasing risk, herbivorous fishes consumed dramatically less food (ca. 90%) but fed at a faster rate when they did feed (ca. 26%). Furthermore, we show that fishes foraging closest to the predator decoy were 40% smaller than those that foraged at further distances. Thus, smaller individuals showed muted response to predation risk compared to their larger counterparts, potentially due to their decreased risk to predation or lower reproductive value (i.e. the asset protection principle). Habitat heterogeneity mediated risk effects differently for different species of herbivores, with predation risk more strongly suppressing herbivore feeding in more complex areas and for individuals at higher risk of predation. Predators appear to create a reefscape of fear that changes the size structure of herbivores towards smaller individuals, increases individual feeding rates, but suppresses overall amounts of primary producers consumed, potentially altering patterns of herbivory, an ecosystem process critical for healthy coral reefs. Title: Reefscapes of Fear: Predation Risk and Reef Hetero-Geneity Interact to Shape Herbivore Foraging Behaviour Author: Catano, Laura B., Rojas, Maria C., Malossi, Ryan J., Peters, Joseph R., Heathaus, Michael R., Fourquren, James W., Burkepile, Deron E. Year: 2016 Predators can exert strong direct and indirect effects on ecological communities by intimidating their prey. The nature of predation risk effects is often context dependent, but in some ecosystems these contingencies are often overlooked. Risk effects are often not uniform across landscapes or among species. Indeed, they can vary widely across gradients of habitat complexity and with different prey escape tactics. These context dependencies may be especially important for ecosystems such as coral reefs that vary widely in habitat complexity and have species-rich predator and prey communities. With field experiments using predator decoys of the black grouper (Mycteroperca bonaci), we investigated how reef complexity interacts with predation risk to affect the foraging behaviour and herbivory rates of large herbivorous fishes (e.g. parrotfishes and surgeonfishes) across four coral reefs in the Florida Keys (USA). In both high and low complexity areas of the reef, we measured how herbivory changed with increasing distance from the predator decoy to examine how herbivorous fishes reconcile the conflicting demands of avoiding predation vs. foraging within a reefscape context. We show that with increasing risk, herbivorous fishes consumed dramatically less food (ca. 90%) but fed at a faster rate when they did feed (ca. 26%). Furthermore, we show that fishes foraging closest to the predator decoy were 40% smaller than those that foraged at further distances. Thus, smaller individuals showed muted response to predation risk compared to their larger counterparts, potentially due to their decreased risk to predation or lower reproductive value (i.e. the asset protection principle). Habitat heterogeneity mediated risk effects differently for different species of herbivores, with predation risk more strongly suppressing herbivore feeding in more complex areas and for individuals at higher risk of predation. Predators appear to create a reefscape of fear that changes the size structure of herbivores towards smaller individuals, increases individual feeding rates, but suppresses overall amounts of primary producers consumed, potentially altering patterns of herbivory, an ecosystem process critical for healthy coral reefs. Close

• 34. [Article] Scientifically Defensible Fish Conservation and Recovery Plans: Addressing Diffuse Threats and Developing Rigorous Adaptive Management Plans

  We discuss the importance of addressing diffuse threats to long-term species and habitat viability in fish conservation and recovery planning. In the Pacific Northwest, USA, salmonid management plans have ...

  Citation × Citation Citation Abstract Copy Title: Scientifically Defensible Fish Conservation and Recovery Plans: Addressing Diffuse Threats and Developing Rigorous Adaptive Management Plans Author: Maas-Hebner, Kathleen G., Schreck, Carl B., Hughes, Robert M., Yeakley, J. Alan, Molina, Nancy Year: 2016 We discuss the importance of addressing diffuse threats to long-term species and habitat viability in fish conservation and recovery planning. In the Pacific Northwest, USA, salmonid management plans have typically focused on degraded freshwater habitat, dams, fish passage, harvest rates, and hatchery releases. However, such plans inadequately address threats related to human population and economic growth, intra- and interspecific competition, and changes in climate, ocean, and estuarine conditions. Based on reviews conducted on eight conservation and/or recovery plans, we found that though threats resulting from such changes are difficult to model and/or predict, they are especially important for wide-ranging diadromous species. Adaptive management is also a critical but often inadequately constructed component of those plans. Adaptive management should be designed to respond to evolving knowledge about the fish and their supporting ecosystems; if done properly, it should help improve conservation efforts by decreasing uncertainty regarding known and diffuse threats. We conclude with a general call for environmental managers and planners to reinvigorate the adaptive management process in future management plans, including more explicitly identifying critical uncertainties, implementing monitoring programs to reduce those uncertainties, and explicitly stating what management actions will occur when pre-identified trigger points are reached. Title: Scientifically Defensible Fish Conservation and Recovery Plans: Addressing Diffuse Threats and Developing Rigorous Adaptive Management Plans Author: Maas-Hebner, Kathleen G., Schreck, Carl B., Hughes, Robert M., Yeakley, J. Alan, Molina, Nancy Year: 2016 We discuss the importance of addressing diffuse threats to long-term species and habitat viability in fish conservation and recovery planning. In the Pacific Northwest, USA, salmonid management plans have typically focused on degraded freshwater habitat, dams, fish passage, harvest rates, and hatchery releases. However, such plans inadequately address threats related to human population and economic growth, intra- and interspecific competition, and changes in climate, ocean, and estuarine conditions. Based on reviews conducted on eight conservation and/or recovery plans, we found that though threats resulting from such changes are difficult to model and/or predict, they are especially important for wide-ranging diadromous species. Adaptive management is also a critical but often inadequately constructed component of those plans. Adaptive management should be designed to respond to evolving knowledge about the fish and their supporting ecosystems; if done properly, it should help improve conservation efforts by decreasing uncertainty regarding known and diffuse threats. We conclude with a general call for environmental managers and planners to reinvigorate the adaptive management process in future management plans, including more explicitly identifying critical uncertainties, implementing monitoring programs to reduce those uncertainties, and explicitly stating what management actions will occur when pre-identified trigger points are reached. Close

• 35. [Article] A Behavior-Based Framework for Assessing Barrier Effects to Wildlife from Vehicle Traffic Volume

  Roads, while central to the function of human society, create barriers to animal movement through collisions and habitat fragmentation. Barriers to animal movement affect the evolution and trajectory of ...

  Citation × Citation Citation Abstract Copy Title: A Behavior-Based Framework for Assessing Barrier Effects to Wildlife from Vehicle Traffic Volume Author: Jacobson, Sandra L., Bliss-Ketchum, Leslie L., de Rivera, Catherine E., Smith, Winston P. Year: 2016 Roads, while central to the function of human society, create barriers to animal movement through collisions and habitat fragmentation. Barriers to animal movement affect the evolution and trajectory of populations. Investigators have attempted to use traffic volume, the number of vehicles passing a point on a road segment, to predict effects to wildlife populations approximately linearly and along taxonomic lines; however, taxonomic groupings cannot provide sound predictions because closely related species often respond differently. We assess the role of wildlife behavioral responses to traffic volume as a tool to predict barrier effects from vehicle-caused mortality and avoidance, to provide an early warning system that recognizes traffic volume as a trigger for mitigation, and to better interpret roadkill data. We propose four categories of behavioral response based on the perceived danger to traffic: Nonresponders, Pausers, Speeders, and Avoiders. Nonresponders attempt to cross highways regardless of traffic volume. Pausers stop in the face of danger so have a low probability of successful crossing when traffic volume increases. Hence, highway barrier effects are primarily due to mortality for Nonresponders and Pausers at high traffic volumes. Speeders run away from danger but are unable to do so successfully as traffic volume increases. At moderate to high volume, Speeders are repelled by traffic danger. Avoiders face lower mortality than other categories because they begin to avoid traffic at relatively low traffic volumes. Hence, avoidance causes barrier effects more than mortality for Speeders and Avoiders even at relatively moderate traffic volumes. By considering a species’ risk-avoidance response to traffic, managers can make more appropriate and timely decisions to mitigate effects before populations decline or become locally extinct. Title: A Behavior-Based Framework for Assessing Barrier Effects to Wildlife from Vehicle Traffic Volume Author: Jacobson, Sandra L., Bliss-Ketchum, Leslie L., de Rivera, Catherine E., Smith, Winston P. Year: 2016 Roads, while central to the function of human society, create barriers to animal movement through collisions and habitat fragmentation. Barriers to animal movement affect the evolution and trajectory of populations. Investigators have attempted to use traffic volume, the number of vehicles passing a point on a road segment, to predict effects to wildlife populations approximately linearly and along taxonomic lines; however, taxonomic groupings cannot provide sound predictions because closely related species often respond differently. We assess the role of wildlife behavioral responses to traffic volume as a tool to predict barrier effects from vehicle-caused mortality and avoidance, to provide an early warning system that recognizes traffic volume as a trigger for mitigation, and to better interpret roadkill data. We propose four categories of behavioral response based on the perceived danger to traffic: Nonresponders, Pausers, Speeders, and Avoiders. Nonresponders attempt to cross highways regardless of traffic volume. Pausers stop in the face of danger so have a low probability of successful crossing when traffic volume increases. Hence, highway barrier effects are primarily due to mortality for Nonresponders and Pausers at high traffic volumes. Speeders run away from danger but are unable to do so successfully as traffic volume increases. At moderate to high volume, Speeders are repelled by traffic danger. Avoiders face lower mortality than other categories because they begin to avoid traffic at relatively low traffic volumes. Hence, avoidance causes barrier effects more than mortality for Speeders and Avoiders even at relatively moderate traffic volumes. By considering a species’ risk-avoidance response to traffic, managers can make more appropriate and timely decisions to mitigate effects before populations decline or become locally extinct. Close

• 36. [Article] Climate Change and Land Management Impact Rangeland Condition and Sage-Grouse Habitat in Southeastern Oregon

  Contemporary pressures on sagebrush steppe from climate change, exotic species, wildfire, and land use change threaten rangeland species such as the greater sage-grouse (Centrocercus urophasianus). To ...

  Citation × Citation Citation Abstract Copy Title: Climate Change and Land Management Impact Rangeland Condition and Sage-Grouse Habitat in Southeastern Oregon Author: Creutzburg, Megan K., Henderson, Emilie B., Conklin, David R. Year: 2015 Contemporary pressures on sagebrush steppe from climate change, exotic species, wildfire, and land use change threaten rangeland species such as the greater sage-grouse (Centrocercus urophasianus). To effectively manage sagebrush steppe landscapes for long-term goals, managers need information about the potential impacts of climate change, disturbances, and management activities. We integrated information from a dynamic global vegetation model, a sage-grouse habitat climate envelope model, and a state-and-transition simulation model to project broad-scale vegetation dynamics and potential sage-grouse habitat across 23.5 million acres in southeastern Oregon. We evaluated four climate scenarios, including continuing current climate and three scenarios of global climate change, and three management scenarios, including no management, current management and a sage-grouse habitat restoration scenario. All climate change scenarios projected expansion of moist shrub steppe and contraction of dry shrub steppe, but climate scenarios varied widely in the projected extent of xeric shrub steppe, where hot, dry summer conditions are unfavorable for sage-grouse. Wildfire increased by 26% over the century under current climate due to exotic grass encroachment, and by two- to four-fold across all climate change scenarios as extreme fire years became more frequent. Exotic grasses rapidly expanded in all scenarios as large areas of the landscape initially in semi-degraded condition converted to exotic-dominated systems. Due to the combination of exotic grass invasion, juniper encroachment, and climatic unsuitability for sage-grouse, projected sage-grouse habitat declined in the first several decades, but increased in area under the three climate change scenarios later in the century, as moist shrub steppe increased and rangeland condition improved. Management activities in the model were generally unsuccessful in controlling exotic grass invasion but were effective in slowing woodland expansion. Current levels of restoration treatments were insufficient to prevent some juniper expansion, but increased treatment rates under the restoration scenario maintained juniper near initial levels in priority treatment areas. Our simulations indicate that climate change may have both positive and negative implications for maintaining sage-grouse habitat. Title: Climate Change and Land Management Impact Rangeland Condition and Sage-Grouse Habitat in Southeastern Oregon Author: Creutzburg, Megan K., Henderson, Emilie B., Conklin, David R. Year: 2015 Contemporary pressures on sagebrush steppe from climate change, exotic species, wildfire, and land use change threaten rangeland species such as the greater sage-grouse (Centrocercus urophasianus). To effectively manage sagebrush steppe landscapes for long-term goals, managers need information about the potential impacts of climate change, disturbances, and management activities. We integrated information from a dynamic global vegetation model, a sage-grouse habitat climate envelope model, and a state-and-transition simulation model to project broad-scale vegetation dynamics and potential sage-grouse habitat across 23.5 million acres in southeastern Oregon. We evaluated four climate scenarios, including continuing current climate and three scenarios of global climate change, and three management scenarios, including no management, current management and a sage-grouse habitat restoration scenario. All climate change scenarios projected expansion of moist shrub steppe and contraction of dry shrub steppe, but climate scenarios varied widely in the projected extent of xeric shrub steppe, where hot, dry summer conditions are unfavorable for sage-grouse. Wildfire increased by 26% over the century under current climate due to exotic grass encroachment, and by two- to four-fold across all climate change scenarios as extreme fire years became more frequent. Exotic grasses rapidly expanded in all scenarios as large areas of the landscape initially in semi-degraded condition converted to exotic-dominated systems. Due to the combination of exotic grass invasion, juniper encroachment, and climatic unsuitability for sage-grouse, projected sage-grouse habitat declined in the first several decades, but increased in area under the three climate change scenarios later in the century, as moist shrub steppe increased and rangeland condition improved. Management activities in the model were generally unsuccessful in controlling exotic grass invasion but were effective in slowing woodland expansion. Current levels of restoration treatments were insufficient to prevent some juniper expansion, but increased treatment rates under the restoration scenario maintained juniper near initial levels in priority treatment areas. Our simulations indicate that climate change may have both positive and negative implications for maintaining sage-grouse habitat. Close

• 37. [Article] Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management

  Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics ...

  Citation × Citation Citation Abstract Copy Title: Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management Author: Guderyahn, Laura B., Smithers, Ashley P., Mims, Meryl C. Year: 2016 Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics of urban aquatic habitat promote or inhibit amphibian occupancy and recruitment is limited. In this study, we examined amphibian community composition and occurrence patterns in ponds, wetlands, and swales of Gresham, Oregon. We collected occurrence data for five native amphibians: northwestern salamander (Ambystoma gracile), long-toed salamander (A. macrodactylum), Pacific chorus frog (Pseudacris regilla), northern red-legged frog (Rana aurora aurora), and rough-skinned newt (Taricha granulosa) as well as one non-native amphibian, the American bullfrog (Lithobates catesbeianus). One hundred sites were surveyed from 2007 to 2013. Local and landscape attributes were characterized for each site, and potential drivers of species occupancy were evaluated using a combination of multivariate approaches and generalized linear models. In general, percent impervious surface and distance to nearest forest patch, both associated with urbanization, were negatively correlated with site occupancy for all species. Non-native vegetation was also negatively associated with occupancy of three species (long-toed salamanders, Pacific chorus frogs, and northern red-legged frogs). In contrast, occupancy was positively correlated with pond depth and hydroperiod length for all species. We found evidence of two distinct groups of co-occurring amphibian species driven by habitat depth and hydroperiod. Finally, we report results of threshold analyses that examined species-specific habitat associations. This study describes urban habitat associations of a native amphibian community, identifies factors with positive, negative or mixed relationships with amphibian species, and is an important step in informing the management of urban aquatic habitat to promote persistence of native amphibians. Title: Assessing Habitat Requirements of Pond-Breeding Amphibians in a Highly Urbanized Landscape:Implications for Management Author: Guderyahn, Laura B., Smithers, Ashley P., Mims, Meryl C. Year: 2016 Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics of urban aquatic habitat promote or inhibit amphibian occupancy and recruitment is limited. In this study, we examined amphibian community composition and occurrence patterns in ponds, wetlands, and swales of Gresham, Oregon. We collected occurrence data for five native amphibians: northwestern salamander (Ambystoma gracile), long-toed salamander (A. macrodactylum), Pacific chorus frog (Pseudacris regilla), northern red-legged frog (Rana aurora aurora), and rough-skinned newt (Taricha granulosa) as well as one non-native amphibian, the American bullfrog (Lithobates catesbeianus). One hundred sites were surveyed from 2007 to 2013. Local and landscape attributes were characterized for each site, and potential drivers of species occupancy were evaluated using a combination of multivariate approaches and generalized linear models. In general, percent impervious surface and distance to nearest forest patch, both associated with urbanization, were negatively correlated with site occupancy for all species. Non-native vegetation was also negatively associated with occupancy of three species (long-toed salamanders, Pacific chorus frogs, and northern red-legged frogs). In contrast, occupancy was positively correlated with pond depth and hydroperiod length for all species. We found evidence of two distinct groups of co-occurring amphibian species driven by habitat depth and hydroperiod. Finally, we report results of threshold analyses that examined species-specific habitat associations. This study describes urban habitat associations of a native amphibian community, identifies factors with positive, negative or mixed relationships with amphibian species, and is an important step in informing the management of urban aquatic habitat to promote persistence of native amphibians. Close

• 38. [Article] Nuwuvi (Southern Paiute) Ecological Knowledge of Piñon-Juniper Woodlands: Implications for Conservation and Sustainable Resource Use in Two Southern Nevada Protected Areas

  Nuwuvi (Southern Paiute) have inhabited the southern Great Basin for thousands of years, and consider Nuvagantu (where snow sits) in the Spring Mountains landscape to be the locus of their creation as ...

  Citation × Citation Citation Abstract Copy Title: Nuwuvi (Southern Paiute) Ecological Knowledge of Piñon-Juniper Woodlands: Implications for Conservation and Sustainable Resource Use in Two Southern Nevada Protected Areas Author: Lefler, Brian John Year: 2014 Nuwuvi (Southern Paiute) have inhabited the southern Great Basin for thousands of years, and consider Nuvagantu (where snow sits) in the Spring Mountains landscape to be the locus of their creation as a people. Their ancestral territory spans parts of Nevada, Utah, Arizona, and California. My research identifies and describes the heterogeneous character of Nuwuvi ecological knowledge (NEK) of piñon-juniper woodland ecosystems within two federal protected areas (PAs) in southeastern Nevada, the Spring Mountains National Recreation Area (SMNRA) and the Desert National Wildlife Refuge (DNWR), as remembered and practiced to varying degrees by 22 select Nuwuvi knowledge holders. I focus my investigation on four primary aspects of NEK. First, drawing from data obtained through ethnoecological research, I discuss how Nuwuvi ecological knowledge evolved through protracted observation and learning from past resource depletions, and adapted to various environmental and socio-economic drivers of change induced since Euro-American incursion. Second, I argue that Nuwuvi management practices operate largely within a framework of non-equilibrium ecology, marked by low to intermediate disturbances and guided by Nuwuvi conceptions of environmental health and balance. These practices favor landscape heterogeneity and patchiness, and engender ecosystem renewal, expanded ecotones, and increased biodiversity. I then consider the third and fourth aspects of NEK as two case studies that consider NEK at the individual, species, population, habitat, and landscape scales. These case studies operationalize NEK as a relevant body of knowledge and techniques conducive to collaborative resource stewardship initiatives with federal land management agency partners. In the first case study I suggest that the Great Basin piñon pines are Nuwuvi cultural keystone species (CKS), evaluating their central importance to Nuwuvi according to several criteria including number of uses, role in ritual and story, and uniqueness relative to other species. In the second case study I contend that local social institutions regulated Nuwuvi resource use in the past and in some cases continued to do so at the time of study. These local social institutions included a system of resource extraction and habitat entrance taboos that may have mitigated impacts and supported sustainable resource use and conservation. The implications of this research are that Nuwuvi ecological knowledge, disturbance-based adaptive management practices, and resource and habitat taboos are relevant to contemporary land management concerns in piñon-juniper woodlands, offering complementary approaches to adaptive management as practiced in the SMNRA and the DNWR despite divergent epistemological foundations. My research contributed to the Nuwuvi Knowledge-to-Action Project, an applied government-to-government consultation, collaborative resource stewardship, and cultural revitalization project facilitated by The Mountain Institute among seven Nuwuvi Nations, the U.S. Forest Service, and the U.S. Fish and Wildlife Service. Title: Nuwuvi (Southern Paiute) Ecological Knowledge of Piñon-Juniper Woodlands: Implications for Conservation and Sustainable Resource Use in Two Southern Nevada Protected Areas Author: Lefler, Brian John Year: 2014 Nuwuvi (Southern Paiute) have inhabited the southern Great Basin for thousands of years, and consider Nuvagantu (where snow sits) in the Spring Mountains landscape to be the locus of their creation as a people. Their ancestral territory spans parts of Nevada, Utah, Arizona, and California. My research identifies and describes the heterogeneous character of Nuwuvi ecological knowledge (NEK) of piñon-juniper woodland ecosystems within two federal protected areas (PAs) in southeastern Nevada, the Spring Mountains National Recreation Area (SMNRA) and the Desert National Wildlife Refuge (DNWR), as remembered and practiced to varying degrees by 22 select Nuwuvi knowledge holders. I focus my investigation on four primary aspects of NEK. First, drawing from data obtained through ethnoecological research, I discuss how Nuwuvi ecological knowledge evolved through protracted observation and learning from past resource depletions, and adapted to various environmental and socio-economic drivers of change induced since Euro-American incursion. Second, I argue that Nuwuvi management practices operate largely within a framework of non-equilibrium ecology, marked by low to intermediate disturbances and guided by Nuwuvi conceptions of environmental health and balance. These practices favor landscape heterogeneity and patchiness, and engender ecosystem renewal, expanded ecotones, and increased biodiversity. I then consider the third and fourth aspects of NEK as two case studies that consider NEK at the individual, species, population, habitat, and landscape scales. These case studies operationalize NEK as a relevant body of knowledge and techniques conducive to collaborative resource stewardship initiatives with federal land management agency partners. In the first case study I suggest that the Great Basin piñon pines are Nuwuvi cultural keystone species (CKS), evaluating their central importance to Nuwuvi according to several criteria including number of uses, role in ritual and story, and uniqueness relative to other species. In the second case study I contend that local social institutions regulated Nuwuvi resource use in the past and in some cases continued to do so at the time of study. These local social institutions included a system of resource extraction and habitat entrance taboos that may have mitigated impacts and supported sustainable resource use and conservation. The implications of this research are that Nuwuvi ecological knowledge, disturbance-based adaptive management practices, and resource and habitat taboos are relevant to contemporary land management concerns in piñon-juniper woodlands, offering complementary approaches to adaptive management as practiced in the SMNRA and the DNWR despite divergent epistemological foundations. My research contributed to the Nuwuvi Knowledge-to-Action Project, an applied government-to-government consultation, collaborative resource stewardship, and cultural revitalization project facilitated by The Mountain Institute among seven Nuwuvi Nations, the U.S. Forest Service, and the U.S. Fish and Wildlife Service. Close

• 39. [Article] Macroinvertebrates and Excessive Fine Sediment Conditions in Oregon Coastal Streams

  The Pacific Coastal ecoregion contains large tracts of economically important forest lands that also serve as critical stream habitat for endangered Salmonids. Excessive fine sediment deposition in streams ...

  Citation × Citation Citation Abstract Copy Title: Macroinvertebrates and Excessive Fine Sediment Conditions in Oregon Coastal Streams Author: Edwards, Patrick Michael Year: 2014 The Pacific Coastal ecoregion contains large tracts of economically important forest lands that also serve as critical stream habitat for endangered Salmonids. Excessive fine sediment deposition in streams of this region is a major environmental concern in the region but difficult to measure directly. The use of stream invertebrates to monitor fine sediment conditions in streams requires careful consideration of several important factors that complicate their use as bioindicators including high spatial and temporal variability and covariance with other environmental variables. To evaluate the use of stream invertebrates as bioindicators of excessive fine sediment, three hypotheses were tested. The first hypothesis was that invertebrates would be related to broad-scale climate variables (Chapter 2). The second hypothesis was that functional aspects of the invertebrate community would serve as useful indicators of excessive fine sediment condition (Chapter 3). The third hypothesis was that invertebrates in streams with naturally high levels of sediment would be tolerant to fine sediment (<2 mm, Chapter 4). Hypotheses were tested using a temporal data set at two streams in western Oregon, spatial data from 214 sites across the Oregon Coast Range, and in-situ experiment conducted in streams with erosive or resistant geologies. In the temporal study, both invertebrate density and functional traits were positively related to El Nino strength (R2 range = 0.22-0.36, ρ range = 0.008-0.04) and air temperature (R2 range = 0.32-0.49, ρ range = 0.002-0.01). The spatial study identified several environmental and hydrological factors that exhibited strong negative controls on both fine sediment (Mantel r range 0.14-0.25, ρ range = 0.001-0.01) and invertebrate Scrapers (R2 range = 0.11-0.14, ρ range = 0.001-0.04). The result of the experimental study provide evidence that invertebrates in streams with erosive geologies exhibit tolerance to sediment addition when compared to invertebrates in resistant geologies (mean loss=15%, ρ <0.01) and that invertebrate grazing traits were most strongly associated with fine sediment dosing frequency (ρ <0.05). The findings of this research demonstrate the role of geology in shaping invertebrate communities and their functional response to fine sediment addition and identify functional indicators that may be useful in different geologic settings. For environmental managers in the Pacific Coastal ecoregion, these findings are of potential value in assisting with the identification of biologically-relevant changes in stream fine sediment conditions and support efforts to balance economic needs in the region while protecting critical Salmonid habitat. Title: Macroinvertebrates and Excessive Fine Sediment Conditions in Oregon Coastal Streams Author: Edwards, Patrick Michael Year: 2014 The Pacific Coastal ecoregion contains large tracts of economically important forest lands that also serve as critical stream habitat for endangered Salmonids. Excessive fine sediment deposition in streams of this region is a major environmental concern in the region but difficult to measure directly. The use of stream invertebrates to monitor fine sediment conditions in streams requires careful consideration of several important factors that complicate their use as bioindicators including high spatial and temporal variability and covariance with other environmental variables. To evaluate the use of stream invertebrates as bioindicators of excessive fine sediment, three hypotheses were tested. The first hypothesis was that invertebrates would be related to broad-scale climate variables (Chapter 2). The second hypothesis was that functional aspects of the invertebrate community would serve as useful indicators of excessive fine sediment condition (Chapter 3). The third hypothesis was that invertebrates in streams with naturally high levels of sediment would be tolerant to fine sediment (<2 mm, Chapter 4). Hypotheses were tested using a temporal data set at two streams in western Oregon, spatial data from 214 sites across the Oregon Coast Range, and in-situ experiment conducted in streams with erosive or resistant geologies. In the temporal study, both invertebrate density and functional traits were positively related to El Nino strength (R2 range = 0.22-0.36, ρ range = 0.008-0.04) and air temperature (R2 range = 0.32-0.49, ρ range = 0.002-0.01). The spatial study identified several environmental and hydrological factors that exhibited strong negative controls on both fine sediment (Mantel r range 0.14-0.25, ρ range = 0.001-0.01) and invertebrate Scrapers (R2 range = 0.11-0.14, ρ range = 0.001-0.04). The result of the experimental study provide evidence that invertebrates in streams with erosive geologies exhibit tolerance to sediment addition when compared to invertebrates in resistant geologies (mean loss=15%, ρ <0.01) and that invertebrate grazing traits were most strongly associated with fine sediment dosing frequency (ρ <0.05). The findings of this research demonstrate the role of geology in shaping invertebrate communities and their functional response to fine sediment addition and identify functional indicators that may be useful in different geologic settings. For environmental managers in the Pacific Coastal ecoregion, these findings are of potential value in assisting with the identification of biologically-relevant changes in stream fine sediment conditions and support efforts to balance economic needs in the region while protecting critical Salmonid habitat. Close

• 40. [Article] Metacommunity Structure of Zooplankton in River Networks: Roles of Environmental and Spatial Factors

  Zooplankton in river systems have seldom been studied in the context of metacommunity ecology. Spatial factors (e.g., river connectivity, directionality, and man-made dams) may play a key role in influencing ...

  Citation × Citation Citation Abstract Copy Title: Metacommunity Structure of Zooplankton in River Networks: Roles of Environmental and Spatial Factors Author: Zhao, Kun, Song, Kun, Pan, Yangdong, Wang, Lizhu Year: 2017 Zooplankton in river systems have seldom been studied in the context of metacommunity ecology. Spatial factors (e.g., river connectivity, directionality, and man-made dams) may play a key role in influencing the metacommunity structure of rotifers because of their small body size and weak mobility. In contrast, local environmental factors (e.g., physicochemical habitat) may be more important to crustaceans due to their larger body size and stronger mobility. We sampled zooplankton and environmental factors during wet and dry seasons from 47 sites along the Ying River in China to assess the roles of the spatial and environmental factors in structuring zooplankton metacommunities. We used Moran’s eigenvector map and asymmetric eigenvector map to model the influences of river connectivity, directionality, and man-made dams on zooplankton metacommunity structure. We then used partial redundancy analysis to identify individual and interactive effects of spatial and environmental factors on both the entire zooplankton assemblages and two zooplankton groups of different body sizes and mobility. A total of 101 taxa were identified and taxa richness was higher in the wet season (72) than in the dry season (58). Zooplankton assemblages were primarily dominated by rotifers. For the dry season, environmental factors such as total nitrogen, water temperature, and pH explained a significant portion of variation in zooplankton community; river connectivity was more important than river directionality to zooplankton metacommunity structure. For the wet season, spatial factors were more influential than environmental factors such as dissolved oxygen and water transparency; river directionality played an important role in influencing the spatial structures of both environmental condition and zooplankton metacommunity. We also found significant effects of man-made dams on zooplankton metacommunity structure. Spatial factors are more influential in structuring small body size and weak mobility rotifer communities, while environmental factors are more important in determining the variation of crustaceans due to their larger body size and stronger mobility. We concluded that river connectivity and directionality should be considered as key factors for better understanding the spatial processes of planktonic passive dispersers in river networks. Our study provides new insight on understanding riverine zooplankton metacommunity ecology and contributes to the knowledge of river ecosystem health monitoring and management. Title: Metacommunity Structure of Zooplankton in River Networks: Roles of Environmental and Spatial Factors Author: Zhao, Kun, Song, Kun, Pan, Yangdong, Wang, Lizhu Year: 2017 Zooplankton in river systems have seldom been studied in the context of metacommunity ecology. Spatial factors (e.g., river connectivity, directionality, and man-made dams) may play a key role in influencing the metacommunity structure of rotifers because of their small body size and weak mobility. In contrast, local environmental factors (e.g., physicochemical habitat) may be more important to crustaceans due to their larger body size and stronger mobility. We sampled zooplankton and environmental factors during wet and dry seasons from 47 sites along the Ying River in China to assess the roles of the spatial and environmental factors in structuring zooplankton metacommunities. We used Moran’s eigenvector map and asymmetric eigenvector map to model the influences of river connectivity, directionality, and man-made dams on zooplankton metacommunity structure. We then used partial redundancy analysis to identify individual and interactive effects of spatial and environmental factors on both the entire zooplankton assemblages and two zooplankton groups of different body sizes and mobility. A total of 101 taxa were identified and taxa richness was higher in the wet season (72) than in the dry season (58). Zooplankton assemblages were primarily dominated by rotifers. For the dry season, environmental factors such as total nitrogen, water temperature, and pH explained a significant portion of variation in zooplankton community; river connectivity was more important than river directionality to zooplankton metacommunity structure. For the wet season, spatial factors were more influential than environmental factors such as dissolved oxygen and water transparency; river directionality played an important role in influencing the spatial structures of both environmental condition and zooplankton metacommunity. We also found significant effects of man-made dams on zooplankton metacommunity structure. Spatial factors are more influential in structuring small body size and weak mobility rotifer communities, while environmental factors are more important in determining the variation of crustaceans due to their larger body size and stronger mobility. We concluded that river connectivity and directionality should be considered as key factors for better understanding the spatial processes of planktonic passive dispersers in river networks. Our study provides new insight on understanding riverine zooplankton metacommunity ecology and contributes to the knowledge of river ecosystem health monitoring and management. Close

• 41. [Article] Applications of Remote Sensing to the Study of Estuarine Physics: Suspended Sediment Dynamics in the Columbia River Estuary

  Estuarine circulation and its associated transport processes drive the environmental integrity of many near-shore habitats (the coastal ocean, rivers, estuaries and emergent wetlands). A thorough understanding ...

  Citation × Citation Citation Abstract Copy Title: Applications of Remote Sensing to the Study of Estuarine Physics: Suspended Sediment Dynamics in the Columbia River Estuary Author: Hudson, Austin Scott Year: 2014 Estuarine circulation and its associated transport processes drive the environmental integrity of many near-shore habitats (the coastal ocean, rivers, estuaries and emergent wetlands). A thorough understanding and consideration of this circulation is, therefore, vital in the proper management of these habitats. The aim of this study is to bring together theory and new satellite observations in the Columbia River Estuary to increase our understanding of estuarine circulation and transport. Surface reflectance measurements gathered by the Moderate Imaging Spectroradiometer (MODIS) are first compared to in situ observations to develop an empirical model for remotely derived surface turbidity. Results indicate that MODIS data significantly correlate with in situ measurements of turbidity throughout the CRE (R2 = 0.96). Remote estimates of turbidity are then used to explore the physical processes that drive their spatial distribution. Although the response to different hydrodynamic conditions varies throughout the system, global levels of turbidity are most sensitive to fluvial and tidal inputs and increase during spring tides and high river flow. As a result, the turbidity field has temporal cycles that are consistent with the frequency of these processes. The location of the estuarine turbidity maximum (ETM) is highly dynamic and typically migrates downstream as the tidal velocity or river flow increases. The ETM becomes trapped near the Megler Bridge (river kilometer 20), however, and the presence of strong topography in this region suggests there exists an interaction between bottom topography and sediment transport. A 2-D semi-analytical model, developed herein from the simplified Navier-Stokes equations, confirms that topographic features exhibit substantial influence on longitudinal turbidity distributions. The model considers the coupled, tidally-averaged velocity (composed of gravitational circulation, internal tidal asymmetry, and river flow) and salinity fields and assumes a condition of morphodynamic equilibrium to estimate the distribution of sediment for arbitrary channel configurations. Model simulations demonstrate that topographic highs tend to increase local seaward sediment fluxes, and that topographic lows increase local landward sediment fluxes. Sediment flux convergence near topographic highs compresses the local turbidity distribution, whereas flux divergence near topographic lows dilates the distribution and, under appropriate conditions, produces multiple ETMs. In summary a combination of the model and satellite data has given valuable new insights into the sediment dynamics of estuarine environments; in particular, both show that turbidity distribution and ETM location vary considerably with tidal and river flow conditions, fluctuating on a variety of timescales, and are heavily influenced by bottom topography. Title: Applications of Remote Sensing to the Study of Estuarine Physics: Suspended Sediment Dynamics in the Columbia River Estuary Author: Hudson, Austin Scott Year: 2014 Estuarine circulation and its associated transport processes drive the environmental integrity of many near-shore habitats (the coastal ocean, rivers, estuaries and emergent wetlands). A thorough understanding and consideration of this circulation is, therefore, vital in the proper management of these habitats. The aim of this study is to bring together theory and new satellite observations in the Columbia River Estuary to increase our understanding of estuarine circulation and transport. Surface reflectance measurements gathered by the Moderate Imaging Spectroradiometer (MODIS) are first compared to in situ observations to develop an empirical model for remotely derived surface turbidity. Results indicate that MODIS data significantly correlate with in situ measurements of turbidity throughout the CRE (R2 = 0.96). Remote estimates of turbidity are then used to explore the physical processes that drive their spatial distribution. Although the response to different hydrodynamic conditions varies throughout the system, global levels of turbidity are most sensitive to fluvial and tidal inputs and increase during spring tides and high river flow. As a result, the turbidity field has temporal cycles that are consistent with the frequency of these processes. The location of the estuarine turbidity maximum (ETM) is highly dynamic and typically migrates downstream as the tidal velocity or river flow increases. The ETM becomes trapped near the Megler Bridge (river kilometer 20), however, and the presence of strong topography in this region suggests there exists an interaction between bottom topography and sediment transport. A 2-D semi-analytical model, developed herein from the simplified Navier-Stokes equations, confirms that topographic features exhibit substantial influence on longitudinal turbidity distributions. The model considers the coupled, tidally-averaged velocity (composed of gravitational circulation, internal tidal asymmetry, and river flow) and salinity fields and assumes a condition of morphodynamic equilibrium to estimate the distribution of sediment for arbitrary channel configurations. Model simulations demonstrate that topographic highs tend to increase local seaward sediment fluxes, and that topographic lows increase local landward sediment fluxes. Sediment flux convergence near topographic highs compresses the local turbidity distribution, whereas flux divergence near topographic lows dilates the distribution and, under appropriate conditions, produces multiple ETMs. In summary a combination of the model and satellite data has given valuable new insights into the sediment dynamics of estuarine environments; in particular, both show that turbidity distribution and ETM location vary considerably with tidal and river flow conditions, fluctuating on a variety of timescales, and are heavily influenced by bottom topography. Close

• 42. [Article] Comparison of Body Size and Wing Type in Beetles Found on Green Roofs and Adjacent Ground Sites in Portland, Oregon

  Green roofs and nearby ground habitats provide an arena to study invasion and compare dispersal ability between beetles. Invasive species can create a host of problems and to better prevent their spread ...

  Citation × Citation Citation Abstract Copy Title: Comparison of Body Size and Wing Type in Beetles Found on Green Roofs and Adjacent Ground Sites in Portland, Oregon Author: Gardner, Maggie Year: 2016 Green roofs and nearby ground habitats provide an arena to study invasion and compare dispersal ability between beetles. Invasive species can create a host of problems and to better prevent their spread it is vital to understand what traits allow for extensive colonization success. In this study, two physical traits of beetles, wing type and body size, were examined and compared to see if there were differences in the beetle communities found on eight green roofs and eight ground sites in Portland, Oregon. No significant difference was found in body size except when comparing roof only species with abundant species, and due to limitations on wing type data, there was no direct correlation found to answer whether wing type corresponded to location. However, green roofs are a useful tool for comparing traits and further research should utilize these increasingly common habitats to better understand why certain species are found on these isolated urban islands. Title: Comparison of Body Size and Wing Type in Beetles Found on Green Roofs and Adjacent Ground Sites in Portland, Oregon Author: Gardner, Maggie Year: 2016 Green roofs and nearby ground habitats provide an arena to study invasion and compare dispersal ability between beetles. Invasive species can create a host of problems and to better prevent their spread it is vital to understand what traits allow for extensive colonization success. In this study, two physical traits of beetles, wing type and body size, were examined and compared to see if there were differences in the beetle communities found on eight green roofs and eight ground sites in Portland, Oregon. No significant difference was found in body size except when comparing roof only species with abundant species, and due to limitations on wing type data, there was no direct correlation found to answer whether wing type corresponded to location. However, green roofs are a useful tool for comparing traits and further research should utilize these increasingly common habitats to better understand why certain species are found on these isolated urban islands. Close

• 43. [Article] Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline

  The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, ...

  Citation × Citation Citation Abstract Copy Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Title: Comparison of Fish Assemblages in Restored and Natural Mangrove Habitats Along an Urban Shoreline Author: Peters, Joseph R., Yeager, Laura A., Layman, Craig A. Year: 2015 The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was similar between restored mangrove habitat with the inclusion of riprap boulders and natural mangrove shorelines. We compared fish assemblages between natural mangrove and riprapmangrove habitats within two areas of northern Biscayne Bay. Fish community structure and certain benthic cover types varied between mangroves and riprap-mangrove habitats. Total fish abundance was greater in mangrove habitat, while taxonomic richness was highest in riprap-mangrove sites in the northern part of the bay. Our findings suggest that fish assemblages and community structure are different between these habitat types, although the geographic context may mediate the effect of habitat type. Therefore, it is likely that these restored mangroves provide different ecological services than unaltered mangrove shorelines. Close

• 44. [Article] A Terrestrial-Aquatic Food Web Subsidy is Potentially Mediated by Multiple Predator Effects on an Arboreal Crab

  Terrestrial-aquatic food web subsidies are known to affect food web structure, ecosystem productivity, and stability of recipient habitats. This study describes a prey flux across the land–water interface ...

  Citation × Citation Citation Abstract Copy Title: A Terrestrial-Aquatic Food Web Subsidy is Potentially Mediated by Multiple Predator Effects on an Arboreal Crab Author: Yeager, Lauren A., Stoner, Elizabeth W., Peters, Joseph R., Layman, Craig A. Year: 2015 Terrestrial-aquatic food web subsidies are known to affect food web structure, ecosystem productivity, and stability of recipient habitats. This study describes a prey flux across the land–water interface associated with a behavioral response to multiple predators. Specifically, mangrove tree crabs (Aratus pisonii, hereafter Aratus) are primarily arboreal, but may jump off mangrove trees to escape avian predators, making them vulnerable to fish predation. Mesocosm experiments, field observations, and tethering assays were used to investigate behavioral responses, habitat shifts, and risk for Aratus associated with these two predator types. In the field, Aratus spent most of their time above the water on mangroves, where risk is lowest. In response to simulated bird strikes in mesocosm trials, crabs jumped off trees to escape imminent risk, and spent more time in and near the water, enhancing risk of fish predation. Fish attacks on crabs were nearly three times greater in treatments with simulated bird attacks. In addition, empirical diet data was used to examine the importance of Aratus as a prey item for a fish predator. Aratus represented up to 29% of diet by volume for one of the most common mesopredators in the Caribbean (gray snapper Lutjanus griseus), with the proportion varying greatly across space. Because Aratus consume mangrove-derived carbon, their consumption by aquatic predators represents another pathway by which mangrove production may be incorporated into aquatic food webs. These data suggest how the nexus of behavioral and food web ecology may provide for new perspectives on energy flow between ecosystems. Title: A Terrestrial-Aquatic Food Web Subsidy is Potentially Mediated by Multiple Predator Effects on an Arboreal Crab Author: Yeager, Lauren A., Stoner, Elizabeth W., Peters, Joseph R., Layman, Craig A. Year: 2015 Terrestrial-aquatic food web subsidies are known to affect food web structure, ecosystem productivity, and stability of recipient habitats. This study describes a prey flux across the land–water interface associated with a behavioral response to multiple predators. Specifically, mangrove tree crabs (Aratus pisonii, hereafter Aratus) are primarily arboreal, but may jump off mangrove trees to escape avian predators, making them vulnerable to fish predation. Mesocosm experiments, field observations, and tethering assays were used to investigate behavioral responses, habitat shifts, and risk for Aratus associated with these two predator types. In the field, Aratus spent most of their time above the water on mangroves, where risk is lowest. In response to simulated bird strikes in mesocosm trials, crabs jumped off trees to escape imminent risk, and spent more time in and near the water, enhancing risk of fish predation. Fish attacks on crabs were nearly three times greater in treatments with simulated bird attacks. In addition, empirical diet data was used to examine the importance of Aratus as a prey item for a fish predator. Aratus represented up to 29% of diet by volume for one of the most common mesopredators in the Caribbean (gray snapper Lutjanus griseus), with the proportion varying greatly across space. Because Aratus consume mangrove-derived carbon, their consumption by aquatic predators represents another pathway by which mangrove production may be incorporated into aquatic food webs. These data suggest how the nexus of behavioral and food web ecology may provide for new perspectives on energy flow between ecosystems. Close

• 45. [Article] Spatial Patterns of Extra-pair Paternity for Spotted Towhees Pipilo Maculatus in Urban Parks

  The extra-pair (EP) mating system of birds may be influenced by food resources, such that nutritionally stressed females are unable to pursue EP fertilizations (constrained female hypothesis; CFH), or ...

  Citation × Citation Citation Abstract Copy Title: Spatial Patterns of Extra-pair Paternity for Spotted Towhees Pipilo Maculatus in Urban Parks Author: Bartos Smith, Sarah, McKay, Jenny E., Murphy, Michael T., Duffield, Deborah A. Year: 2016 The extra-pair (EP) mating system of birds may be influenced by food resources, such that nutritionally stressed females are unable to pursue EP fertilizations (constrained female hypothesis; CFH), or that females on poor territories acquire EP fertilizations during extra-territorial forays in search of food (mating opportunity hypothesis; MOH). Edges of urban habitat fragments are sites of apparent high food abundance for spotted towhees Pipilo maculatus, and we used distance to habitat edge in four urban parks in Portland, OR, USA (2004–2006), to test the CFH and MOH. EP paternity was independent of park identity and year; 44% of nests contained EP young and 26% of all young were EP. As predicted by the CFH, EP paternity was more common in nests of long-tailed (presumably) high quality females. However, independently of tail length, younger females had more EP young than older females, a finding consistent with the MOH. Contrary to predictions of both hypotheses, the probability that a nest contained EP young was highest both at the habitat edge and habitat interior while the proportion of young in nests of EP origin (for nests with EP young) was highest at intermediate distances from habitat edge. We propose that high frequency of EP paternity among females in the interior occurred because, as predicted by the MOH, they ranged more widely in search of food and often encountered EP males. High probability of EP paternity near edges was likely unrelated to female quality. Instead, anthropogenic food sources may have attracted individuals to edges and increased encounters between potential EP mates. Simple opportunity seems likely to account for patterns of EP paternity in spotted towhees, suggesting that human altered environments have the potential to substantially affect EP mating behavior. Title: Spatial Patterns of Extra-pair Paternity for Spotted Towhees Pipilo Maculatus in Urban Parks Author: Bartos Smith, Sarah, McKay, Jenny E., Murphy, Michael T., Duffield, Deborah A. Year: 2016 The extra-pair (EP) mating system of birds may be influenced by food resources, such that nutritionally stressed females are unable to pursue EP fertilizations (constrained female hypothesis; CFH), or that females on poor territories acquire EP fertilizations during extra-territorial forays in search of food (mating opportunity hypothesis; MOH). Edges of urban habitat fragments are sites of apparent high food abundance for spotted towhees Pipilo maculatus, and we used distance to habitat edge in four urban parks in Portland, OR, USA (2004–2006), to test the CFH and MOH. EP paternity was independent of park identity and year; 44% of nests contained EP young and 26% of all young were EP. As predicted by the CFH, EP paternity was more common in nests of long-tailed (presumably) high quality females. However, independently of tail length, younger females had more EP young than older females, a finding consistent with the MOH. Contrary to predictions of both hypotheses, the probability that a nest contained EP young was highest both at the habitat edge and habitat interior while the proportion of young in nests of EP origin (for nests with EP young) was highest at intermediate distances from habitat edge. We propose that high frequency of EP paternity among females in the interior occurred because, as predicted by the MOH, they ranged more widely in search of food and often encountered EP males. High probability of EP paternity near edges was likely unrelated to female quality. Instead, anthropogenic food sources may have attracted individuals to edges and increased encounters between potential EP mates. Simple opportunity seems likely to account for patterns of EP paternity in spotted towhees, suggesting that human altered environments have the potential to substantially affect EP mating behavior. Close

• 46. [Article] Variation of Benthic Algal Assemblages Among Habitats in Subalpine Karstic Lakes and Implications for Bioassessment

  Detecting early warning signs of ecosystem degradation in nature reserves requires ultrasensitive biological indicators. We assessed the potential of using multihabitat assessment of benthic algae (growing ...

  Citation × Citation Citation Abstract Copy Title: Variation of Benthic Algal Assemblages Among Habitats in Subalpine Karstic Lakes and Implications for Bioassessment Author: Pan, Yangdong, Wang, Lizhu, Cao, Yong, Pang, Wanting, Wang, Quanxi, Zhu, Zhongfu, Zhang, Xiaoping, Deng, Guiping Year: 2016 Detecting early warning signs of ecosystem degradation in nature reserves requires ultrasensitive biological indicators. We assessed the potential of using multihabitat assessment of benthic algae (growing on submerged vegetation, rocks, and dead trees) to detect early warning signs of nutrient enrichment in nine karstic lakes in Jiuzhaigou Nature Reserve, a World Natural Heritage site in China. Nonmetric multidimensional scaling analysis showed that variability in benthic diatom assemblages among the major habitats within lakes were generally higher than among lakes. Permutational multivariate analysis of variance indicated that epiphytic diatom assemblages dominated by Achnanthidium minutissimum (Kützing) Czarnecki differed significantly from both epilithic and epidendric assemblages. Epilithon and epidendron, both dominated by Delicata delicatula (Kützing) Krammer and Denticula tenuis Kützing, were not significantly different within lakes. Mean Bray–Curtis dissimilarity index values among the three assemblages in each lake were negatively correlated with the tourism-stress index but the correlation was not statistically significant. Increasing homogeneity in benthic diatom assemblages among habitats within a lake may be due to cumulative nutrient enrichment associated with tourism development. Links among tourisms, nutrient enrichment, and dissimilarity in benthic algae among habitats should be viewed with caution until the cause–effect relationships can be confirmed by in situ manipulative experiments. Title: Variation of Benthic Algal Assemblages Among Habitats in Subalpine Karstic Lakes and Implications for Bioassessment Author: Pan, Yangdong, Wang, Lizhu, Cao, Yong, Pang, Wanting, Wang, Quanxi, Zhu, Zhongfu, Zhang, Xiaoping, Deng, Guiping Year: 2016 Detecting early warning signs of ecosystem degradation in nature reserves requires ultrasensitive biological indicators. We assessed the potential of using multihabitat assessment of benthic algae (growing on submerged vegetation, rocks, and dead trees) to detect early warning signs of nutrient enrichment in nine karstic lakes in Jiuzhaigou Nature Reserve, a World Natural Heritage site in China. Nonmetric multidimensional scaling analysis showed that variability in benthic diatom assemblages among the major habitats within lakes were generally higher than among lakes. Permutational multivariate analysis of variance indicated that epiphytic diatom assemblages dominated by Achnanthidium minutissimum (Kützing) Czarnecki differed significantly from both epilithic and epidendric assemblages. Epilithon and epidendron, both dominated by Delicata delicatula (Kützing) Krammer and Denticula tenuis Kützing, were not significantly different within lakes. Mean Bray–Curtis dissimilarity index values among the three assemblages in each lake were negatively correlated with the tourism-stress index but the correlation was not statistically significant. Increasing homogeneity in benthic diatom assemblages among habitats within a lake may be due to cumulative nutrient enrichment associated with tourism development. Links among tourisms, nutrient enrichment, and dissimilarity in benthic algae among habitats should be viewed with caution until the cause–effect relationships can be confirmed by in situ manipulative experiments. Close

• 47. [Article] Green Roofs Support a Wide Diversity of Collembola in Urban Portland, Oregon

  Green roofs can help address habitat loss in urban areas by supporting plant and animal communities. To determine whether green roofs can support collembola biodiversity, we collected pitfall samples from ...

  Citation × Citation Citation Abstract Copy Title: Green Roofs Support a Wide Diversity of Collembola in Urban Portland, Oregon Author: Miziolek, Konrad Year: 2015 Green roofs can help address habitat loss in urban areas by supporting plant and animal communities. To determine whether green roofs can support collembola biodiversity, we collected pitfall samples from April-June 2015 on two extensive and two intensive green roofs in urban Portland, Oregon. Twenty morphospecies were found across the roofs, indicating that green roofs support a diversity of collembola taxa. The intensive roofs were more biodiverse than the extensive, though roof type may not be the most significant factor affecting collembolan biodiversity. Each of the four green roofs were characterized by a different and unique most dominant morphospecies, and, indeed, each roof possessed a different set of top-three abundant collembola taxa. While green roofs support moderate collembola diversity, preserving natural habitat is important to maintain species richness. Title: Green Roofs Support a Wide Diversity of Collembola in Urban Portland, Oregon Author: Miziolek, Konrad Year: 2015 Green roofs can help address habitat loss in urban areas by supporting plant and animal communities. To determine whether green roofs can support collembola biodiversity, we collected pitfall samples from April-June 2015 on two extensive and two intensive green roofs in urban Portland, Oregon. Twenty morphospecies were found across the roofs, indicating that green roofs support a diversity of collembola taxa. The intensive roofs were more biodiverse than the extensive, though roof type may not be the most significant factor affecting collembolan biodiversity. Each of the four green roofs were characterized by a different and unique most dominant morphospecies, and, indeed, each roof possessed a different set of top-three abundant collembola taxa. While green roofs support moderate collembola diversity, preserving natural habitat is important to maintain species richness. Close

• 48. [Article] Interactive Physiological Responses of Nile Tilapia to Salinity- and Temperature-induced Stress: Quantifying the Regulation of Apoptosis and Cell Cycle Arrest in Oreochromis Niloticus

  Nile tilapia provide an ideal model to study the accumulation of climate change-induced stressors due to their habitat in tropical freshwater systems that are susceptible to salt water invasion and temperature ...

  Citation × Citation Citation Abstract Copy Title: Interactive Physiological Responses of Nile Tilapia to Salinity- and Temperature-induced Stress: Quantifying the Regulation of Apoptosis and Cell Cycle Arrest in Oreochromis Niloticus Author: McGuire, Charlee Year: 2017 Nile tilapia provide an ideal model to study the accumulation of climate change-induced stressors due to their habitat in tropical freshwater systems that are susceptible to salt water invasion and temperature fluctuation due to sea level rise. This study investigates the physiological responses of Nile tilapia to salinity- and temperature-induced stress to identify the interactive effects of simultaneous stressors on the cell cycle. Proteins indicative of cell cycle activity and arrest were quantified in the tissues of Nile tilapia exposed to various environmental conditions varying by temperature and salinity. Dot Blotting was utilized to measure Gadd45 while Western Blotting was used to confirm the identity of the protein. Results from previous investigations in the Buckley lab were also utilized to compare the expression patterns of Gadd45 to relevant cell activity proteins p53 and PCNA. Of the three proteins under scrutiny, a significant change in expression of p53 was observed for the interaction of salinity- and temperature- induced stress, while full strength saltwater treatment alone was found to have a significant impact on the expression of p53, Gadd45 and PCNA. These findings can be used in collaboration with existing studies to describe the coordination of apoptotic pathways in Nile tilapia and other non-mammalian species, as well as to create policy on how to conserve this important species effectively both in the wild and in fisheries for aquaculture, commercial and public health initiatives in response to global climate change. Title: Interactive Physiological Responses of Nile Tilapia to Salinity- and Temperature-induced Stress: Quantifying the Regulation of Apoptosis and Cell Cycle Arrest in Oreochromis Niloticus Author: McGuire, Charlee Year: 2017 Nile tilapia provide an ideal model to study the accumulation of climate change-induced stressors due to their habitat in tropical freshwater systems that are susceptible to salt water invasion and temperature fluctuation due to sea level rise. This study investigates the physiological responses of Nile tilapia to salinity- and temperature-induced stress to identify the interactive effects of simultaneous stressors on the cell cycle. Proteins indicative of cell cycle activity and arrest were quantified in the tissues of Nile tilapia exposed to various environmental conditions varying by temperature and salinity. Dot Blotting was utilized to measure Gadd45 while Western Blotting was used to confirm the identity of the protein. Results from previous investigations in the Buckley lab were also utilized to compare the expression patterns of Gadd45 to relevant cell activity proteins p53 and PCNA. Of the three proteins under scrutiny, a significant change in expression of p53 was observed for the interaction of salinity- and temperature- induced stress, while full strength saltwater treatment alone was found to have a significant impact on the expression of p53, Gadd45 and PCNA. These findings can be used in collaboration with existing studies to describe the coordination of apoptotic pathways in Nile tilapia and other non-mammalian species, as well as to create policy on how to conserve this important species effectively both in the wild and in fisheries for aquaculture, commercial and public health initiatives in response to global climate change. Close

• 49. [Article] Would You Like Fires with That? Using Stakeholder-Derived Forest Management Preference Maps to Model Landscape-level Fuel Reduction Treatment Effects on Wildfire Spread

  Management of public lands in the U.S. aims to achieve multiple goals relating to ecological function, wildlife habitat, support of local economies, and recreation; and in fire-prone landscapes these goals ...

  Citation × Citation Citation Abstract Copy Title: Would You Like Fires with That? Using Stakeholder-Derived Forest Management Preference Maps to Model Landscape-level Fuel Reduction Treatment Effects on Wildfire Spread Author: Cassell, Brooke A., Scheller, Robert M., Nielsen-Pincus, Max Year: 2017 Management of public lands in the U.S. aims to achieve multiple goals relating to ecological function, wildlife habitat, support of local economies, and recreation; and in fire-prone landscapes these goals are often combined with fuels reduction treatments such as forest thinning and prescribed fire. Applied landscape research may attempt to evaluate the tradeoffs implicit in public lands planning or envision potential future land management scenarios, but often fails to incorporate the spatial diversity of stakeholder perspectives. This study explores the use of public participation geographic systems (PPGIS) to identify spatial and thematic community preferences for fuel treatments in a fire-prone landscape in eastern Oregon. Through open-ended questionnaires and formal focus groups, participants identified their management preferences and identified areas they consider priorities for different types and intensities of fuel treatments. By digitizing these PPGIS-derived treatment maps and supplementing with treatment areas according to identified themes (e.g., protected areas, areas of decreased forest vitality), this research models the effects of alternative fuel reduction scenarios on wildfire spread across large landscapes during extreme weather events. In addition, this study provides insight into stakeholders’ preferences for fuel treatments, with preliminary results indicating high levels of approval for a variety of fuel reduction treatments. Title: Would You Like Fires with That? Using Stakeholder-Derived Forest Management Preference Maps to Model Landscape-level Fuel Reduction Treatment Effects on Wildfire Spread Author: Cassell, Brooke A., Scheller, Robert M., Nielsen-Pincus, Max Year: 2017 Management of public lands in the U.S. aims to achieve multiple goals relating to ecological function, wildlife habitat, support of local economies, and recreation; and in fire-prone landscapes these goals are often combined with fuels reduction treatments such as forest thinning and prescribed fire. Applied landscape research may attempt to evaluate the tradeoffs implicit in public lands planning or envision potential future land management scenarios, but often fails to incorporate the spatial diversity of stakeholder perspectives. This study explores the use of public participation geographic systems (PPGIS) to identify spatial and thematic community preferences for fuel treatments in a fire-prone landscape in eastern Oregon. Through open-ended questionnaires and formal focus groups, participants identified their management preferences and identified areas they consider priorities for different types and intensities of fuel treatments. By digitizing these PPGIS-derived treatment maps and supplementing with treatment areas according to identified themes (e.g., protected areas, areas of decreased forest vitality), this research models the effects of alternative fuel reduction scenarios on wildfire spread across large landscapes during extreme weather events. In addition, this study provides insight into stakeholders’ preferences for fuel treatments, with preliminary results indicating high levels of approval for a variety of fuel reduction treatments. Close

• 50. [Article] OSMB Final Report: Task 3. Containment Strategies for Eurasian Watermilfoil Infested Central OR Lakes

  In recent years, public awareness of aquatic invasive species (AIS) has increased considerably in Oregon and elsewhere in the western U.S.. News articles, boat inspection stations and AIS permit programs ...

  Citation × Citation Citation Abstract Copy Title: OSMB Final Report: Task 3. Containment Strategies for Eurasian Watermilfoil Infested Central OR Lakes Author: Morgan, Vanessa, Sytsma, Mark Year: 2014 In recent years, public awareness of aquatic invasive species (AIS) has increased considerably in Oregon and elsewhere in the western U.S.. News articles, boat inspection stations and AIS permit programs have drawn attention to the threat of aquatic invasive species, especially animals like zebra mussels (Dreissena polymorpha), quagga mussels (Dreissena bugensis), and New Zealand mudsnails (Potamopyrgus antipodarum). However, invasive aquatic plants are also capable of causing severe impacts and may similarly be transferred between waterbodies on boats, trailers or other equipment. Heavy infestations can hinder recreational use by motorized and non-motorized boats, snag fishing lines, threaten the safety of swimmers and water-skiers, restrict delivery of irrigation water or quality of drinking water, and negatively impact aquatic habitats used by wildlife. One such plant, Eurasian watermilfoil (Myriophyllum spicatum), is wide-spread in much of the United States, but has only recently been found in four waterbodies in central Oregon’s Deschutes and Jefferson counties. This plant and many other macrophytes are capable of surviving when fragments or seed are carried to new waterbodies by natural or human-mediated means. While certain natural vectors like water currents and birds cannot be controlled, a containment strategy aimed at reducing secondary spread of EWM to new waterways via boat traffic would benefit aquatic resources in the region. Towards that goal, we examined boat launches at known infested waterbodies to determine: the extent of Eurasian watermilfoil, whether physical control techniques would reduce boaters’ direct encounters with this weed, and general awareness of AIS and support for local control of EWM by lake users. Title: OSMB Final Report: Task 3. Containment Strategies for Eurasian Watermilfoil Infested Central OR Lakes Author: Morgan, Vanessa, Sytsma, Mark Year: 2014 In recent years, public awareness of aquatic invasive species (AIS) has increased considerably in Oregon and elsewhere in the western U.S.. News articles, boat inspection stations and AIS permit programs have drawn attention to the threat of aquatic invasive species, especially animals like zebra mussels (Dreissena polymorpha), quagga mussels (Dreissena bugensis), and New Zealand mudsnails (Potamopyrgus antipodarum). However, invasive aquatic plants are also capable of causing severe impacts and may similarly be transferred between waterbodies on boats, trailers or other equipment. Heavy infestations can hinder recreational use by motorized and non-motorized boats, snag fishing lines, threaten the safety of swimmers and water-skiers, restrict delivery of irrigation water or quality of drinking water, and negatively impact aquatic habitats used by wildlife. One such plant, Eurasian watermilfoil (Myriophyllum spicatum), is wide-spread in much of the United States, but has only recently been found in four waterbodies in central Oregon’s Deschutes and Jefferson counties. This plant and many other macrophytes are capable of surviving when fragments or seed are carried to new waterbodies by natural or human-mediated means. While certain natural vectors like water currents and birds cannot be controlled, a containment strategy aimed at reducing secondary spread of EWM to new waterways via boat traffic would benefit aquatic resources in the region. Towards that goal, we examined boat launches at known infested waterbodies to determine: the extent of Eurasian watermilfoil, whether physical control techniques would reduce boaters’ direct encounters with this weed, and general awareness of AIS and support for local control of EWM by lake users. Close

• 51. [Article] Spring Thaw Ionic Pulses Boost Nutrient Availability and Microbial Growth in Entombed Antarctic Dry Valley Cryoconite Holes

  The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only ...

  Citation × Citation Citation Abstract Copy Title: Spring Thaw Ionic Pulses Boost Nutrient Availability and Microbial Growth in Entombed Antarctic Dry Valley Cryoconite Holes Author: Telling, Jon, Anesio, Alexandre M., Tranter, Martyn, Fountain, Andrew G., Nylen, Thomas H., Hawkings, Jon, Singh, Virendra B., Kaur, Preeti, Musilova, Michaela, Wadham, Jemma L. Year: 2014 The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only occasionally exceed 0°C during the Austral summer. Here we follow temporal changes in cryoconite hole biogeochemistry on Canada Glacier from fully frozen conditions through the initial stages of spring thaw toward fully melted holes. The cryoconite holes had a mean isolation age from the glacial drainage system of 3.4 years, with an increasing mass of aqueous nutrients (dissolved organic carbon, total nitrogen, total phosphorus) with longer isolation age. During the initial melt there was a mean nine times enrichment in dissolved chloride relative to mean concentrations of the initial frozen holes indicative of an ionic pulse, with similar mean nine times enrichments in nitrite, ammonium, and dissolved organic matter. Nitrate was enriched twelve times and dissolved organic nitrogen six times, suggesting net nitrification, while lower enrichments for dissolved organic phosphorus and phosphate were consistent with net microbial phosphorus uptake. Rates of bacterial production were significantly elevated during the ionic pulse, likely due to the increased nutrient availability. There was no concomitant increase in photosynthesis rates, with a net depletion of dissolved inorganic carbon suggesting inorganic carbon limitation. Potential nitrogen fixation was detected in fully melted holes where it could be an important source of nitrogen to support microbial growth, but not during the ionic pulse where nitrogen availability was higher. This study demonstrates that ionic pulses significantly alter the timing and magnitude of microbial activity within entombed cryoconite holes, and adds credence to hypotheses that ionic enrichments during freeze-thaw can elevate rates of microbial growth and activity in other icy habitats, such as ice veins and subglacial regelation zones. Title: Spring Thaw Ionic Pulses Boost Nutrient Availability and Microbial Growth in Entombed Antarctic Dry Valley Cryoconite Holes Author: Telling, Jon, Anesio, Alexandre M., Tranter, Martyn, Fountain, Andrew G., Nylen, Thomas H., Hawkings, Jon, Singh, Virendra B., Kaur, Preeti, Musilova, Michaela, Wadham, Jemma L. Year: 2014 The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only occasionally exceed 0°C during the Austral summer. Here we follow temporal changes in cryoconite hole biogeochemistry on Canada Glacier from fully frozen conditions through the initial stages of spring thaw toward fully melted holes. The cryoconite holes had a mean isolation age from the glacial drainage system of 3.4 years, with an increasing mass of aqueous nutrients (dissolved organic carbon, total nitrogen, total phosphorus) with longer isolation age. During the initial melt there was a mean nine times enrichment in dissolved chloride relative to mean concentrations of the initial frozen holes indicative of an ionic pulse, with similar mean nine times enrichments in nitrite, ammonium, and dissolved organic matter. Nitrate was enriched twelve times and dissolved organic nitrogen six times, suggesting net nitrification, while lower enrichments for dissolved organic phosphorus and phosphate were consistent with net microbial phosphorus uptake. Rates of bacterial production were significantly elevated during the ionic pulse, likely due to the increased nutrient availability. There was no concomitant increase in photosynthesis rates, with a net depletion of dissolved inorganic carbon suggesting inorganic carbon limitation. Potential nitrogen fixation was detected in fully melted holes where it could be an important source of nitrogen to support microbial growth, but not during the ionic pulse where nitrogen availability was higher. This study demonstrates that ionic pulses significantly alter the timing and magnitude of microbial activity within entombed cryoconite holes, and adds credence to hypotheses that ionic enrichments during freeze-thaw can elevate rates of microbial growth and activity in other icy habitats, such as ice veins and subglacial regelation zones. Close

• 52. [Article] A Review of Urban Water Body Challenges and Approaches: (1) Rehabilitation and Remediation

  We review how urbanization alters aquatic ecosystems, as well as actions that managers can take to remediate urban waters. Urbanization affects streams by fundamentally altering longitudinal and lateral ...

  Citation × Citation Citation Abstract Copy Title: A Review of Urban Water Body Challenges and Approaches: (1) Rehabilitation and Remediation Author: Hughes, Robert M., Dunham, Susie, Maas-Hebner, Kathleen G., Yeakley, J. Alan, Schreck, Carl B., Harte, Michael, Molina, Nancy, Shock, Clinton C., Kaczynski, Victor W., Schaeffer, Jeff Year: 2014 We review how urbanization alters aquatic ecosystems, as well as actions that managers can take to remediate urban waters. Urbanization affects streams by fundamentally altering longitudinal and lateral processes that in turn alter hydrology, habitat, and water chemistry; these effects create physical and chemical stressors that in turn affect the biota. Urban streams often suffer from multiple stressor effects that have collectively been termed an “urban stream syndrome,” in which no single factor dominates degraded conditions. Resource managers have multiple ways of combating the urban stream syndrome. These approaches range from whole-watershed protection to reach-scale habitat rehabilitation, but the prescription must be matched to the scale of the factors that are causing the problem, and results will likely not be immediate because of lengthy recovery times. Although pristine or reference conditions are far from attainable, urban stream rehabilitation is a worthy goal because appropriate actions can provide ecosystem improvements as well as increased ecosystem service benefits for human society. Title: A Review of Urban Water Body Challenges and Approaches: (1) Rehabilitation and Remediation Author: Hughes, Robert M., Dunham, Susie, Maas-Hebner, Kathleen G., Yeakley, J. Alan, Schreck, Carl B., Harte, Michael, Molina, Nancy, Shock, Clinton C., Kaczynski, Victor W., Schaeffer, Jeff Year: 2014 We review how urbanization alters aquatic ecosystems, as well as actions that managers can take to remediate urban waters. Urbanization affects streams by fundamentally altering longitudinal and lateral processes that in turn alter hydrology, habitat, and water chemistry; these effects create physical and chemical stressors that in turn affect the biota. Urban streams often suffer from multiple stressor effects that have collectively been termed an “urban stream syndrome,” in which no single factor dominates degraded conditions. Resource managers have multiple ways of combating the urban stream syndrome. These approaches range from whole-watershed protection to reach-scale habitat rehabilitation, but the prescription must be matched to the scale of the factors that are causing the problem, and results will likely not be immediate because of lengthy recovery times. Although pristine or reference conditions are far from attainable, urban stream rehabilitation is a worthy goal because appropriate actions can provide ecosystem improvements as well as increased ecosystem service benefits for human society. Close

• 53. [Article] Small Tidal Channels Improve Foraging Opportunities for Calidris Shorebirds

  Estuarine intertidal habitats are heterogeneous, therefore migratory shorebirds are expected to forage in microhabitats where they can maximize their energy intake. Identifying proximate factors that migratory ...

  Citation × Citation Citation Abstract Copy Title: Small Tidal Channels Improve Foraging Opportunities for Calidris Shorebirds Author: Miller, Aileen K., de Rivera, Catherine E. Year: 2014 Estuarine intertidal habitats are heterogeneous, therefore migratory shorebirds are expected to forage in microhabitats where they can maximize their energy intake. Identifying proximate factors that migratory shorebirds use to accept or reject a particular habitat patch will help land managers make conservation and restoration decisions that provide the greatest benefits to shorebird populations during migration, a period of intense energy usage. We examined whether small semipermanent tidal channels were preferentially used by foraging Western Sandpipers (Calidris mauri) and Dunlins (C. alpina) during a spring migratory stopover in Bandon Marsh, an Oregon, USA, estuary. Further, we tested alternative hypotheses about how channels might be beneficial to shorebirds by examining infauna abundance, composition, and depth alongside channels compared with that in open mudflats. The densities of Western Sandpipers and Dunlins were at least 4 times higher along channels than in open mudflat habitats. Infauna along channels were twice as abundant as those in the surrounding mudflats, and infauna were generally found closer to the surface. Furthermore, sediment alongside channels required less than half the force to probe, probably increasing shorebirds' overall access to prey. We conclude that shorebirds selected microhabitats near channels because of the greater food abundance and availability. Additional evidence suggested that another microhabitat, patches of red algae (Gracilaria sp.), may also have conferred advantages on foraging shorebirds. Channels may be a valuable microhabitat to consider when selecting conservation areas for shorebirds, and maintaining channels (e.g., through maintaining natural hydrology and sedimentation patterns) should be considered in management practices. Title: Small Tidal Channels Improve Foraging Opportunities for Calidris Shorebirds Author: Miller, Aileen K., de Rivera, Catherine E. Year: 2014 Estuarine intertidal habitats are heterogeneous, therefore migratory shorebirds are expected to forage in microhabitats where they can maximize their energy intake. Identifying proximate factors that migratory shorebirds use to accept or reject a particular habitat patch will help land managers make conservation and restoration decisions that provide the greatest benefits to shorebird populations during migration, a period of intense energy usage. We examined whether small semipermanent tidal channels were preferentially used by foraging Western Sandpipers (Calidris mauri) and Dunlins (C. alpina) during a spring migratory stopover in Bandon Marsh, an Oregon, USA, estuary. Further, we tested alternative hypotheses about how channels might be beneficial to shorebirds by examining infauna abundance, composition, and depth alongside channels compared with that in open mudflats. The densities of Western Sandpipers and Dunlins were at least 4 times higher along channels than in open mudflat habitats. Infauna along channels were twice as abundant as those in the surrounding mudflats, and infauna were generally found closer to the surface. Furthermore, sediment alongside channels required less than half the force to probe, probably increasing shorebirds' overall access to prey. We conclude that shorebirds selected microhabitats near channels because of the greater food abundance and availability. Additional evidence suggested that another microhabitat, patches of red algae (Gracilaria sp.), may also have conferred advantages on foraging shorebirds. Channels may be a valuable microhabitat to consider when selecting conservation areas for shorebirds, and maintaining channels (e.g., through maintaining natural hydrology and sedimentation patterns) should be considered in management practices. Close

• 54. [Article] Damage and Alteration of Mangroves Inhabited by a Marine Wood-Borer

  Animals can exert a strong influence on the structure and function of foundation species such as mangroves. Because mangroves live at the interface of land and sea, both terrestrial and marine species ...

  Citation × Citation Citation Abstract Copy Title: Damage and Alteration of Mangroves Inhabited by a Marine Wood-Borer Author: Davidson, Timothy Mathias, de Rivera, Catherine E., Hsieh, Hwey-Lian Year: 2014 Animals can exert a strong influence on the structure and function of foundation species such as mangroves. Because mangroves live at the interface of land and sea, both terrestrial and marine species affect them, including numerous herbivores and boring species. These organisms can affect the fecundity, performance, and morphology of mangroves. In a mangrove stand in southwestern Taiwan, we discovered that mangroves were extensively damaged by woodboring isopods Sphaeroma terebrans. We examined the relationships between burrowing damage from S. terebrans and metrics of mangrove fecundity, performance, and morphology. Individuals of Rhizophora stylosa that were more burrowed by isopods had significantly fewer propagules, fewer ground roots stabilizing the tree, smaller leaves, and more non-foliated twigs. Similarly, Avicennia marina with more burrows had fewer pneumatophores and lenticels (used for gaseous exchange), and pneumatophores with more necrotic tissue. The most heavily damaged trees were hollowed-out with burrows (A. marina) or fell over when their supportive root system failed (R. stylosa). These correlations suggest that marine wood-borers can negatively influence mangroves and alter tree morphology, although other stressors may also be involved. While studies have examined the effects of isopods on root-level production, we provide the first quantitative evidence that localized burrowing damage is correlated with tree-level effects. These results are consistent with other literature demonstrating the importance of sub-lethal damage by borers in shaping foundation species. Such damage may have cascading effects on the diverse assemblages of marine and terrestrial biota that use mangroves as habitat. Title: Damage and Alteration of Mangroves Inhabited by a Marine Wood-Borer Author: Davidson, Timothy Mathias, de Rivera, Catherine E., Hsieh, Hwey-Lian Year: 2014 Animals can exert a strong influence on the structure and function of foundation species such as mangroves. Because mangroves live at the interface of land and sea, both terrestrial and marine species affect them, including numerous herbivores and boring species. These organisms can affect the fecundity, performance, and morphology of mangroves. In a mangrove stand in southwestern Taiwan, we discovered that mangroves were extensively damaged by woodboring isopods Sphaeroma terebrans. We examined the relationships between burrowing damage from S. terebrans and metrics of mangrove fecundity, performance, and morphology. Individuals of Rhizophora stylosa that were more burrowed by isopods had significantly fewer propagules, fewer ground roots stabilizing the tree, smaller leaves, and more non-foliated twigs. Similarly, Avicennia marina with more burrows had fewer pneumatophores and lenticels (used for gaseous exchange), and pneumatophores with more necrotic tissue. The most heavily damaged trees were hollowed-out with burrows (A. marina) or fell over when their supportive root system failed (R. stylosa). These correlations suggest that marine wood-borers can negatively influence mangroves and alter tree morphology, although other stressors may also be involved. While studies have examined the effects of isopods on root-level production, we provide the first quantitative evidence that localized burrowing damage is correlated with tree-level effects. These results are consistent with other literature demonstrating the importance of sub-lethal damage by borers in shaping foundation species. Such damage may have cascading effects on the diverse assemblages of marine and terrestrial biota that use mangroves as habitat. Close

• 55. [Article] Modeling Predator Habitat to Enhance Reintroduction Planning

  Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations ...

  Citation × Citation Citation Abstract Copy Title: Modeling Predator Habitat to Enhance Reintroduction Planning Author: Halsey, Shiloh Michael, Zielinski, William J., Scheller, Robert M. Year: 2015 Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations in the western United States have declined substantially in the last century. Reintroduction plans are underway, but the ability of the species to establish a selfsustaining population is affected by predation from its primary predator, the bobcat (Lynx rufus). Objectives To develop a habitat model that incorporates both habitat of the focal species and the spatial patterning of predator habitat. To locate areas of densely aggregated habitat that would be suitable for reintroduction. Methods Using camera survey data, we modeled the association between bobcat presence and environmental features using a classification tree. We applied this model to a spatial analysis of fisher habitat and identified reintroduction areas in the southern Washington Cascade Range. Results The classification tree predicted bobcat detection based on elevation and mean tree diameter. The final model identified fisher reintroduction locations primarily in or near existing wilderness areas. Fisher habitat areas identified considering both habitat and predation risk differed from those identified without considering predation. Conclusion Our spatial approach is unique among fisher reintroduction plans by accounting for both resource requirements and risk of predation. It can be used as a template for future reintroduction efforts in other regions and for other species. Using similar models to refine population management and reintroduction should improve the probability of successful population establishment and stability. Title: Modeling Predator Habitat to Enhance Reintroduction Planning Author: Halsey, Shiloh Michael, Zielinski, William J., Scheller, Robert M. Year: 2015 Context The success of species reintroduction often depends on predation risk and spatial estimates of predator habitat. The fisher (Pekania pennanti) is a species of conservation concern and populations in the western United States have declined substantially in the last century. Reintroduction plans are underway, but the ability of the species to establish a selfsustaining population is affected by predation from its primary predator, the bobcat (Lynx rufus). Objectives To develop a habitat model that incorporates both habitat of the focal species and the spatial patterning of predator habitat. To locate areas of densely aggregated habitat that would be suitable for reintroduction. Methods Using camera survey data, we modeled the association between bobcat presence and environmental features using a classification tree. We applied this model to a spatial analysis of fisher habitat and identified reintroduction areas in the southern Washington Cascade Range. Results The classification tree predicted bobcat detection based on elevation and mean tree diameter. The final model identified fisher reintroduction locations primarily in or near existing wilderness areas. Fisher habitat areas identified considering both habitat and predation risk differed from those identified without considering predation. Conclusion Our spatial approach is unique among fisher reintroduction plans by accounting for both resource requirements and risk of predation. It can be used as a template for future reintroduction efforts in other regions and for other species. Using similar models to refine population management and reintroduction should improve the probability of successful population establishment and stability. Close

• 56. [Article] Seasonal and Sex Differences in the Effects of Melatonin on Brain Arginine Vasotocin in Green Treefrogs (Hyla cinerea): Relationship to Melatonin Receptor 1a

  Critical life history events such as breeding, migration and hibernation must take place in the correct environmental context to minimize deleterious consequences on survival and reproductive fitness. ...

  Citation × Citation Citation Abstract Copy Title: Seasonal and Sex Differences in the Effects of Melatonin on Brain Arginine Vasotocin in Green Treefrogs (Hyla cinerea): Relationship to Melatonin Receptor 1a Author: Howard, Christina Marie Year: 2014 Critical life history events such as breeding, migration and hibernation must take place in the correct environmental context to minimize deleterious consequences on survival and reproductive fitness. Neuroendocrine mechanisms synchronizing internal physiological states with extrinsic environmental cues are vital to timing life history events appropriately. Secretion of the pineal hormone melatonin is sensitive to light and temperature cues, which provides a physiological indicator of time of day and time of year for organisms. Melatonin influences seasonal reproduction in a variety of vertebrates, likely by altering the synthesis and/or release of reproductive neuropeptides in the brain. The neuropeptides arginine vasotocin and its mammalian homologue, arginine vasopressin, are well-known modulators of reproductive and sociosexual behavior across vertebrate taxa, and are likely targets of melatonin in the context of seasonal reproduction. There is extensive evidence that vasotocin/vasopressin innervation in the brain is subject to seasonal variation, and that this variation is frequently sexually dimorphic. However, evidence that melatonin directly modulates this important neuropeptide system is lacking. Melatonin receptor 1a (MT1 in mammals) may be responsible for mediating melatonin's influence on brain vasotocin, as it is known to regulate seasonal reproduction in a variety of vertebrates. In the present study, I asked whether melatonin influences brain vasotocin in male green treefrogs (Hyla cinerea), and compared the distribution of melatonin receptor 1a in the brain of green treefrogs between sexes and seasons. Adult male and female green treefrogs were collected from field sites in Louisiana during the summer breeding season. Summer animals were acclimated to lab conditions for 3 weeks, then euthanized and their brains collected. Winter animals were maintained in the lab for four months under incrementally changing photo-, thermo-, and hygroperiod regimes that mimicked the transition to winter in their natural habitat, followed by euthanasia and brain collection. A subset of winter males (Experiment 1) were implanted with melatonin-filled or blank silastic capsules for a period of one month prior to euthanasia and brain collection. Brains of these males were processed for vasotocin immunohistochemistry. I quantified AVT-ir cell number in Experiment 1 males in the nucleus accumbens (NAcc), amygdala and caudal striatum (AMG), preoptic area (POA), suprachaismatic nucleus (SCN), and ventral hypothalamus (VH). Melatonin did not influence brain vasotocin-ir cell number in any brain region. Brains from untreated summer and winter males and females were collected and processed for MT1 immunohistochemistry. MT1-ir cells were quantified in the NAcc, striatum (STR), AMG, POA, SCN, and VH. In all regions quantified, reproductively active males had significantly more MT1-ir cells than nonreproductive males. Within the summer breeding season, males had significantly more MT1-ir cells in the NAcc than did reproductively active females. In all other regions there was no significant difference in MT1-ir cell number between reproductively active males and females. Collectively, these data suggest that melatonin modulates vasotocin via MT1. These findings assist in elucidating the neuroendocrine mechanisms by which vertebrates integrate seasonal cues with physiology to correctly time critical life history events. Title: Seasonal and Sex Differences in the Effects of Melatonin on Brain Arginine Vasotocin in Green Treefrogs (Hyla cinerea): Relationship to Melatonin Receptor 1a Author: Howard, Christina Marie Year: 2014 Critical life history events such as breeding, migration and hibernation must take place in the correct environmental context to minimize deleterious consequences on survival and reproductive fitness. Neuroendocrine mechanisms synchronizing internal physiological states with extrinsic environmental cues are vital to timing life history events appropriately. Secretion of the pineal hormone melatonin is sensitive to light and temperature cues, which provides a physiological indicator of time of day and time of year for organisms. Melatonin influences seasonal reproduction in a variety of vertebrates, likely by altering the synthesis and/or release of reproductive neuropeptides in the brain. The neuropeptides arginine vasotocin and its mammalian homologue, arginine vasopressin, are well-known modulators of reproductive and sociosexual behavior across vertebrate taxa, and are likely targets of melatonin in the context of seasonal reproduction. There is extensive evidence that vasotocin/vasopressin innervation in the brain is subject to seasonal variation, and that this variation is frequently sexually dimorphic. However, evidence that melatonin directly modulates this important neuropeptide system is lacking. Melatonin receptor 1a (MT1 in mammals) may be responsible for mediating melatonin's influence on brain vasotocin, as it is known to regulate seasonal reproduction in a variety of vertebrates. In the present study, I asked whether melatonin influences brain vasotocin in male green treefrogs (Hyla cinerea), and compared the distribution of melatonin receptor 1a in the brain of green treefrogs between sexes and seasons. Adult male and female green treefrogs were collected from field sites in Louisiana during the summer breeding season. Summer animals were acclimated to lab conditions for 3 weeks, then euthanized and their brains collected. Winter animals were maintained in the lab for four months under incrementally changing photo-, thermo-, and hygroperiod regimes that mimicked the transition to winter in their natural habitat, followed by euthanasia and brain collection. A subset of winter males (Experiment 1) were implanted with melatonin-filled or blank silastic capsules for a period of one month prior to euthanasia and brain collection. Brains of these males were processed for vasotocin immunohistochemistry. I quantified AVT-ir cell number in Experiment 1 males in the nucleus accumbens (NAcc), amygdala and caudal striatum (AMG), preoptic area (POA), suprachaismatic nucleus (SCN), and ventral hypothalamus (VH). Melatonin did not influence brain vasotocin-ir cell number in any brain region. Brains from untreated summer and winter males and females were collected and processed for MT1 immunohistochemistry. MT1-ir cells were quantified in the NAcc, striatum (STR), AMG, POA, SCN, and VH. In all regions quantified, reproductively active males had significantly more MT1-ir cells than nonreproductive males. Within the summer breeding season, males had significantly more MT1-ir cells in the NAcc than did reproductively active females. In all other regions there was no significant difference in MT1-ir cell number between reproductively active males and females. Collectively, these data suggest that melatonin modulates vasotocin via MT1. These findings assist in elucidating the neuroendocrine mechanisms by which vertebrates integrate seasonal cues with physiology to correctly time critical life history events. Close

• 57. [Article] Relationships that Extend Beyond the Fence-Line: Private Landowner Attitudes and Interest in Conservation Easements

  Private land conservation provides an opportunity to address problems of habitat fragmentation and biodiversity loss caused by an increase in the development and parcelization of private land. Conservation ...

  Citation × Citation Citation Abstract Copy Title: Relationships that Extend Beyond the Fence-Line: Private Landowner Attitudes and Interest in Conservation Easements Author: Vizek, Ashley Lyn Year: 2016 Private land conservation provides an opportunity to address problems of habitat fragmentation and biodiversity loss caused by an increase in the development and parcelization of private land. Conservation easements (CEs) are an innovative tool used by land trusts to protect significant natural qualities of private land in perpetuity, while also allowing the land to remain in private ownership. Traditionally, property represents an individualistic relationship, however, CEs redefine this relationship by seeking to maximize the overlap in private and public goods in property. In this study, I explore the relationship between the common good and private property through an analysis of landowner attitudes and interest in conveying CEs. To address my research objectives I implemented a mixed-mode survey to 664 private landowners in the Whychus Creek Watershed in Deschutes County, OR. I received 257 survey responses, yielding a response rate of 41%. The first layer of this study focuses on landowner attitudes towards CEs (Chapter 2). The results of an exploratory factor analysis suggest there are two dimensions to landowner attitudes towards CEs--internal and external dimension. I constructed logistic regression models to predict positive internal and external attitudes and found that external attitudes are primarily influenced by environmental beliefs, whereas internal attitudes are influenced by a suite of factors including financial beliefs and perceived risk to private ownership. Furthermore, landowner knowledge and awareness of CEs may play a role in attitude development. I found that as awareness increased the number of landowners perceiving low risk also increased. Additionally, I found that those who learned about CEs from a peer were more likely to have an extreme positive or negative attitude towards CEs. The second part of this study focuses on landowner interest in conveying a CE (Chapter 3). The results of a multinomial logistic regression analysis suggest that positive external and internal attitudes towards CEs provide the foundation for CE, while personal incentives and connections to the social and/or natural community serve as the motivation driving CE conveyance. Although the results of this study are only representative of landowners in the Whychus Creek Watershed I argue that some of the findings may be more broadly applicable. Contributing to our conceptual understanding of CEs, I discuss how CEs may be beneficial in reintegrating the common good into private property. Further, I highlight that landowner connections to both the social community and natural environment are important characteristics of CE conveyance as well as private land conservation in general. Title: Relationships that Extend Beyond the Fence-Line: Private Landowner Attitudes and Interest in Conservation Easements Author: Vizek, Ashley Lyn Year: 2016 Private land conservation provides an opportunity to address problems of habitat fragmentation and biodiversity loss caused by an increase in the development and parcelization of private land. Conservation easements (CEs) are an innovative tool used by land trusts to protect significant natural qualities of private land in perpetuity, while also allowing the land to remain in private ownership. Traditionally, property represents an individualistic relationship, however, CEs redefine this relationship by seeking to maximize the overlap in private and public goods in property. In this study, I explore the relationship between the common good and private property through an analysis of landowner attitudes and interest in conveying CEs. To address my research objectives I implemented a mixed-mode survey to 664 private landowners in the Whychus Creek Watershed in Deschutes County, OR. I received 257 survey responses, yielding a response rate of 41%. The first layer of this study focuses on landowner attitudes towards CEs (Chapter 2). The results of an exploratory factor analysis suggest there are two dimensions to landowner attitudes towards CEs--internal and external dimension. I constructed logistic regression models to predict positive internal and external attitudes and found that external attitudes are primarily influenced by environmental beliefs, whereas internal attitudes are influenced by a suite of factors including financial beliefs and perceived risk to private ownership. Furthermore, landowner knowledge and awareness of CEs may play a role in attitude development. I found that as awareness increased the number of landowners perceiving low risk also increased. Additionally, I found that those who learned about CEs from a peer were more likely to have an extreme positive or negative attitude towards CEs. The second part of this study focuses on landowner interest in conveying a CE (Chapter 3). The results of a multinomial logistic regression analysis suggest that positive external and internal attitudes towards CEs provide the foundation for CE, while personal incentives and connections to the social and/or natural community serve as the motivation driving CE conveyance. Although the results of this study are only representative of landowners in the Whychus Creek Watershed I argue that some of the findings may be more broadly applicable. Contributing to our conceptual understanding of CEs, I discuss how CEs may be beneficial in reintegrating the common good into private property. Further, I highlight that landowner connections to both the social community and natural environment are important characteristics of CE conveyance as well as private land conservation in general. Close

• 58. [Article] Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives

  Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in ...

  Citation × Citation Citation Abstract Copy Title: Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives Author: Strecker, Angela L., Brittain, Jeffrey Thomas Year: 2017 Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in the largest water development project in the US history, the Columbia Basin Project (CBP; eastern Washington, USA), which also altered environmental conditions; however, the ecological consequences are largely unknown. Using a historical dataset, we examined long-term patterns in zooplankton communities, water chemistry and clarity, testing the hypothesis that increased connectivity will result in taxonomic homogenization. Further, we tested contemporary drivers of communities using a comprehensive set of environmental and landscape variables. Waterbodies were sampled for zooplankton community composition as well as physical and chemical variables inside and outside the CBP using methods consistent with historical studies. We found significant declines in salinity inside the CBP, whereas changes in water clarity were prevalent across all waterbodies. Increased connectivity via canals homogenized zooplankton communities over time, as well as increasing regional richness. Other long-term changes in zooplankton communities may be related to climate change, invasive species, and land-use changes. Synthesis and applications. Though canals may offer species spatial refugia, homogenization may decrease resilience to environmental stressors. These new hybrid aquatic landscapes, or hydroscapes, should be considered carefully in future water development, including specific plans for monitoring of species and environmental conditions, as well as mitigation of undesirable conditions and/or non-native species. Title: Increased Habitat Connectivity Homogenizes Freshwater Communities: Historical and Landscape Perspectives Author: Strecker, Angela L., Brittain, Jeffrey Thomas Year: 2017 Increases in habitat connectivity can have consequences for taxonomic, functional, and genetic diversity of communities. Previously isolated aquatic habitats were connected with canals and pipelines in the largest water development project in the US history, the Columbia Basin Project (CBP; eastern Washington, USA), which also altered environmental conditions; however, the ecological consequences are largely unknown. Using a historical dataset, we examined long-term patterns in zooplankton communities, water chemistry and clarity, testing the hypothesis that increased connectivity will result in taxonomic homogenization. Further, we tested contemporary drivers of communities using a comprehensive set of environmental and landscape variables. Waterbodies were sampled for zooplankton community composition as well as physical and chemical variables inside and outside the CBP using methods consistent with historical studies. We found significant declines in salinity inside the CBP, whereas changes in water clarity were prevalent across all waterbodies. Increased connectivity via canals homogenized zooplankton communities over time, as well as increasing regional richness. Other long-term changes in zooplankton communities may be related to climate change, invasive species, and land-use changes. Synthesis and applications. Though canals may offer species spatial refugia, homogenization may decrease resilience to environmental stressors. These new hybrid aquatic landscapes, or hydroscapes, should be considered carefully in future water development, including specific plans for monitoring of species and environmental conditions, as well as mitigation of undesirable conditions and/or non-native species. Close

• 59. [Article] Connecting to Nature, Community, and Self: A Conservation Corps Approach to Re-engaging At-Risk Youth in Science Education

  The social and environmental challenges of the coming decades will require that individuals possess environmental literacy: the understanding of natural systems combined with a sense of care for the earth, ...

  Citation × Citation Citation Abstract Copy Title: Connecting to Nature, Community, and Self: A Conservation Corps Approach to Re-engaging At-Risk Youth in Science Education Author: Linden, Sara Jo Year: 2016 The social and environmental challenges of the coming decades will require that individuals possess environmental literacy: the understanding of natural systems combined with a sense of care for the earth, and the confidence and competency to act on its behalf. At the same time, disengaged youth need education environments that foster belonging and promote affective outcomes. The youth conservation corps model provides a natural context for engaging academically at-risk youth in environmental science education, while fostering connection to nature and student self-efficacy in ways that are experiential, relevant, and relationship-based. The focus of this study was a conservation corps program that integrates habitat restoration fieldwork and environmental science curriculum. The participants of this study were eight high school seniors who participated in the program for credit toward their high school diplomas. Data were collected through both quantitative and qualitative measures. Students completed a pre-test to assess their understanding and application of conceptual knowledge in ecosystem relationships and biodiversity. Upon completion of a six-week curriculum, they completed a post-test assessing knowledge in the same areas, two retrospective pre-post surveys measuring connection to nature and self-efficacy, and a post-evaluation measuring affective outcomes. Individual interviews were conducted in order to provide further insights and to identify elements of the program that contributed to positive outcomes. Results showed statistically significant increases in all outcome areas as well as positive student evaluation of affective outcomes. The outdoor and experiential components of the program were found to contribute most significantly to the positive outcomes. Title: Connecting to Nature, Community, and Self: A Conservation Corps Approach to Re-engaging At-Risk Youth in Science Education Author: Linden, Sara Jo Year: 2016 The social and environmental challenges of the coming decades will require that individuals possess environmental literacy: the understanding of natural systems combined with a sense of care for the earth, and the confidence and competency to act on its behalf. At the same time, disengaged youth need education environments that foster belonging and promote affective outcomes. The youth conservation corps model provides a natural context for engaging academically at-risk youth in environmental science education, while fostering connection to nature and student self-efficacy in ways that are experiential, relevant, and relationship-based. The focus of this study was a conservation corps program that integrates habitat restoration fieldwork and environmental science curriculum. The participants of this study were eight high school seniors who participated in the program for credit toward their high school diplomas. Data were collected through both quantitative and qualitative measures. Students completed a pre-test to assess their understanding and application of conceptual knowledge in ecosystem relationships and biodiversity. Upon completion of a six-week curriculum, they completed a post-test assessing knowledge in the same areas, two retrospective pre-post surveys measuring connection to nature and self-efficacy, and a post-evaluation measuring affective outcomes. Individual interviews were conducted in order to provide further insights and to identify elements of the program that contributed to positive outcomes. Results showed statistically significant increases in all outcome areas as well as positive student evaluation of affective outcomes. The outdoor and experiential components of the program were found to contribute most significantly to the positive outcomes. Close

• 60. [Article] Hydrodynamic and Water Quality Modeling of the Chehalis River Using CE-QUAL-W2

  The Chehalis River Basin is located in the southwest region of Washington State, originating in the Olympic Mountains and flowing to Grays Harbor and the Pacific Ocean. The Chehalis River is over 125 miles, ...

  Citation × Citation Citation Abstract Copy Title: Hydrodynamic and Water Quality Modeling of the Chehalis River Using CE-QUAL-W2 Author: Van Glubt, Sarah Year: 2017 The Chehalis River Basin is located in the southwest region of Washington State, originating in the Olympic Mountains and flowing to Grays Harbor and the Pacific Ocean. The Chehalis River is over 125 miles, exists within five counties, and flows through agricultural, residential, industrial, and forest land areas. Four major rivers discharge to the Chehalis River, as well as many smaller creeks, five wastewater treatment plants, and groundwater flows. Flooding is a major problem in the relatively flat areas surrounding the cities of Chehalis and Centralia, with severe consequences for property, safety and transportation. As a result, construction of a flood-control dam in the upper basin has been proposed. One major concern of constructing a dam is the potentially severe impacts to fish health and habitat. The Chehalis River has routinely violated water quality standards for primarily temperature and dissolved oxygen, and has had multiple water quality and Total Maximum Daily Load studies beginning in 1990. CE-QUAL-W2, a two-dimensional (longitudinal and vertical) hydrodynamic and water quality model, was used to simulate the Chehalis River, including free flowing river stretches and stratified (in summer) lake-like stretches. The goals of this research were to assess the flood retention structure's impacts to water quality, as well as river responses to potential climate change scenarios. In order to use the model to achieve these goals, calibration to field data for flow, temperature, and water quality constituents was performed. This involved developing meteorological data, riparian shading data, and flow, temperature, water quality records for all tributaries during the calibration period of January 1, 2013 to December 31, 2014. System cross-sectional geometry data were also required for the model grid. Because of the short travel time in the river, the model was sensitive to boundary condition data, wind speed, bathymetry, nutrient kinetics, and algae, epiphyton, and zooplankton kinetics. Future conditions showed predictions of warmer water temperatures and slight changes to water quality conditions on the river. As fish in the area prefer cooler water temperatures, this could pose a threat to fish health and habitat. Flood retention structures also showed impacts to river temperature and water quality. Structures with the purpose of flood retention only (only operating during times of flooding) gave model predictions for daily maximum temperature higher than structures that employed flood retention and flow augmentation (operating during all times of the year). This suggested the management of flow passage or retention by the dam is important for water quality on the river. As this research continues improvements will be made, particularly to temperature and water quality constituents. Additional data for the system would be beneficial to this process. Model predictions of temperature were sensitive to meteorological data, including cloud cover, which were largely estimated based on solar radiation. Additional meteorological data throughout the basin would be useful to temperature results. Temperature results were also sensitive to the model bathymetry, and additional investigations into segments widths and water depths may improve temperature predictions. Water quality constituent data were largely lacking for the system. Many estimation techniques and approximations were used for input water quality constituents for the model upstream boundary and tributaries when little or no data were available, introducing uncertainty to the model. It was not possible to calibrate pH to field data because alkalinity data were essentially unavailable. However, other constituents had good agreement between model predictions and field data, including dissolved oxygen, nitrates, total phosphorus, and total suspended solids. Title: Hydrodynamic and Water Quality Modeling of the Chehalis River Using CE-QUAL-W2 Author: Van Glubt, Sarah Year: 2017 The Chehalis River Basin is located in the southwest region of Washington State, originating in the Olympic Mountains and flowing to Grays Harbor and the Pacific Ocean. The Chehalis River is over 125 miles, exists within five counties, and flows through agricultural, residential, industrial, and forest land areas. Four major rivers discharge to the Chehalis River, as well as many smaller creeks, five wastewater treatment plants, and groundwater flows. Flooding is a major problem in the relatively flat areas surrounding the cities of Chehalis and Centralia, with severe consequences for property, safety and transportation. As a result, construction of a flood-control dam in the upper basin has been proposed. One major concern of constructing a dam is the potentially severe impacts to fish health and habitat. The Chehalis River has routinely violated water quality standards for primarily temperature and dissolved oxygen, and has had multiple water quality and Total Maximum Daily Load studies beginning in 1990. CE-QUAL-W2, a two-dimensional (longitudinal and vertical) hydrodynamic and water quality model, was used to simulate the Chehalis River, including free flowing river stretches and stratified (in summer) lake-like stretches. The goals of this research were to assess the flood retention structure's impacts to water quality, as well as river responses to potential climate change scenarios. In order to use the model to achieve these goals, calibration to field data for flow, temperature, and water quality constituents was performed. This involved developing meteorological data, riparian shading data, and flow, temperature, water quality records for all tributaries during the calibration period of January 1, 2013 to December 31, 2014. System cross-sectional geometry data were also required for the model grid. Because of the short travel time in the river, the model was sensitive to boundary condition data, wind speed, bathymetry, nutrient kinetics, and algae, epiphyton, and zooplankton kinetics. Future conditions showed predictions of warmer water temperatures and slight changes to water quality conditions on the river. As fish in the area prefer cooler water temperatures, this could pose a threat to fish health and habitat. Flood retention structures also showed impacts to river temperature and water quality. Structures with the purpose of flood retention only (only operating during times of flooding) gave model predictions for daily maximum temperature higher than structures that employed flood retention and flow augmentation (operating during all times of the year). This suggested the management of flow passage or retention by the dam is important for water quality on the river. As this research continues improvements will be made, particularly to temperature and water quality constituents. Additional data for the system would be beneficial to this process. Model predictions of temperature were sensitive to meteorological data, including cloud cover, which were largely estimated based on solar radiation. Additional meteorological data throughout the basin would be useful to temperature results. Temperature results were also sensitive to the model bathymetry, and additional investigations into segments widths and water depths may improve temperature predictions. Water quality constituent data were largely lacking for the system. Many estimation techniques and approximations were used for input water quality constituents for the model upstream boundary and tributaries when little or no data were available, introducing uncertainty to the model. It was not possible to calibrate pH to field data because alkalinity data were essentially unavailable. However, other constituents had good agreement between model predictions and field data, including dissolved oxygen, nitrates, total phosphorus, and total suspended solids. Close

• 61. [Article] An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs

  Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized ...

  Citation × Citation Citation Abstract Copy Title: An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs Author: Cimino, Samuel Anthony Year: 2016 Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized as a series of stages (Transport, Introduction, Establishment, and Spread), which encourages ecologists to isolate factors that might enable a species to pass from one stage to another and therefore guide prevention or impact management. This thesis addresses each stage of invasion and attempts to determine where management might succeed in preventing invasion or minimizing impacts. The transport and introduction of aquatic invasive species (AIS) was analyzed by conducting a three tier human subjects survey at Tenmile Lake, Oregon over a two year period in which a public boat wash station was built and installed. Assessing boater knowledge of AIS and understanding proper boat cleaning procedure is useful in determining the threat of transport and introduction as overland boater movements is a major vector of AIS. The comparison between pre- and post- boat wash surveys indicate that there is a disconnect between what boaters say they will do and how they actually behave. While 75.9% of boaters from the pre-survey claimed they would use a boat wash station at Tenmile Lake, only 38.5% of post-survey boaters were observed using the station. Furthermore, the surveys identified knowledge gaps of boaters' awareness of AIS. More than 20.0% of boaters surveyed could not verbally name any AIS. To better understand the establishment and spread stages of invasion, I examined the influence of a specific AIS, the New Zealand mud snail (Potamopyrgus antipodarum; NZMS), on benthic food webs throughout three very different aquatic ecosystems (lakes, rivers, and estuaries). Samples of benthic lake, river, and estuarine invertebrates were collected, identified, and counted, and stable isotope analyses (SIA) were conducted on several components of the food web. NZMS densities were found to be dynamic, with population densities fluctuating over time and between locations. A significant negative relationship between NZMS density and community diversity across all ecosystems was found. However, the densities of specific feeding groups had varying positive (omnivores) and negative (herbivores) correlations with NZMS densities. Furthermore, SIA indicated that NZMS don't appear to be competing with native macroinvertebrates for the same food source. NZMS were found to have different influences on each invaded ecosystem, thus management of this particular AIS is difficult once established and spreading. The results of this thesis suggest that prevention of the transport and introduction of NZMS needs to be the focus for future management. Preventative management should include public outreach regarding AIS and proper boat cleaning procedure, and management should also emphasize the need for regional policies and regulations on the transport of AIS rather than site or state specific policies and regulations. Title: An Investigation of Invasion: Boater Knowledge Concerning Aquatic Invasive Species and the Influence of the New Zealand Mud Snail on Benthic Food Webs Author: Cimino, Samuel Anthony Year: 2016 Invasive species are second only to habitat loss as a leading cause of native species displacement and the management of invasive species costs hundreds of billions annually. Invasion is often conceptualized as a series of stages (Transport, Introduction, Establishment, and Spread), which encourages ecologists to isolate factors that might enable a species to pass from one stage to another and therefore guide prevention or impact management. This thesis addresses each stage of invasion and attempts to determine where management might succeed in preventing invasion or minimizing impacts. The transport and introduction of aquatic invasive species (AIS) was analyzed by conducting a three tier human subjects survey at Tenmile Lake, Oregon over a two year period in which a public boat wash station was built and installed. Assessing boater knowledge of AIS and understanding proper boat cleaning procedure is useful in determining the threat of transport and introduction as overland boater movements is a major vector of AIS. The comparison between pre- and post- boat wash surveys indicate that there is a disconnect between what boaters say they will do and how they actually behave. While 75.9% of boaters from the pre-survey claimed they would use a boat wash station at Tenmile Lake, only 38.5% of post-survey boaters were observed using the station. Furthermore, the surveys identified knowledge gaps of boaters' awareness of AIS. More than 20.0% of boaters surveyed could not verbally name any AIS. To better understand the establishment and spread stages of invasion, I examined the influence of a specific AIS, the New Zealand mud snail (Potamopyrgus antipodarum; NZMS), on benthic food webs throughout three very different aquatic ecosystems (lakes, rivers, and estuaries). Samples of benthic lake, river, and estuarine invertebrates were collected, identified, and counted, and stable isotope analyses (SIA) were conducted on several components of the food web. NZMS densities were found to be dynamic, with population densities fluctuating over time and between locations. A significant negative relationship between NZMS density and community diversity across all ecosystems was found. However, the densities of specific feeding groups had varying positive (omnivores) and negative (herbivores) correlations with NZMS densities. Furthermore, SIA indicated that NZMS don't appear to be competing with native macroinvertebrates for the same food source. NZMS were found to have different influences on each invaded ecosystem, thus management of this particular AIS is difficult once established and spreading. The results of this thesis suggest that prevention of the transport and introduction of NZMS needs to be the focus for future management. Preventative management should include public outreach regarding AIS and proper boat cleaning procedure, and management should also emphasize the need for regional policies and regulations on the transport of AIS rather than site or state specific policies and regulations. Close

• 62. [Article] Quantifying the Impacts of a Novel Predator: The Distinctive Case of the Oregon Spotted Frog (<i>Rana pretiosa</i>) and the Invasive American Bullfrog (<i>Rana (Aquarana) catesbeiana</i>)

  The decline of the Oregon Spotted Frog (Rana pretiosa), a Pacific Northwest endemic now federally listed as threatened, has been attributed to several aspects of ecosystem alteration, primarily habitat ...

  Citation × Citation Citation Abstract Copy Title: Quantifying the Impacts of a Novel Predator: The Distinctive Case of the Oregon Spotted Frog (<i>Rana pretiosa</i>) and the Invasive American Bullfrog (<i>Rana (Aquarana) catesbeiana</i>) Author: Tidwell, Kyle Scott Year: 2017 The decline of the Oregon Spotted Frog (Rana pretiosa), a Pacific Northwest endemic now federally listed as threatened, has been attributed to several aspects of ecosystem alteration, primarily habitat degradation and loss. The introduced American Bullfrog (Rana (Aquarana) catesbeiana) has been widely implicated in those declines, but the basis of that contention has been difficult to characterize. The bullfrog occurring at every site of recent Oregon Spotted Frog extirpation has focused concern about its impact. Here, I present a suite of interconnected studies that examine the behavioral ecology of both species to better understand the potential for bullfrog-mediated Oregon Spotted Frog extirpation. I quantified Oregon Spotted Frog anti-predator behavior from the only known population successfully co-occurring with bullfrogs (Conboy Lake) and a population devoid of bullfrog impact (Big Marsh), and compared these behaviors to the predatory traits of the bullfrog. The initial study revealed that captive-reared individuals from the Oregon Spotted Frog population that has successfully co-occurred with bullfrogs respond faster to a predatory stimulus (measured as latency to response) than Oregon Spotted Frogs from a population not to exposed to bullfrogs. Subsequent field investigations of the approach distance allowed by a predator stimulus before taking evasive action (termed the flight initiation distance: FID) conducted with the Oregon Spotted Frog population co-occurring with bullfrogs first demonstrated that FID of recently metamorphosed bullfrogs is consistently greater than that of recently metamorphosed Oregon Spotted Frogs. Further, examination of FID across all post-metamorphic age classes of Oregon Spotted Frogs revealed that older frogs do not allow as close approach as recently metamorphosed Oregon Spotted Frogs. This age class shift in FID did not occur in the Oregon Spotted Frog population not exposed to bullfrogs. In the latter population, FID did not differ among age classes. Since the bullfrog might be driving this age-based change in anti-predator behavior, I explored the variation in strike distance of bullfrogs from the site of co-occurrence in both the field and laboratory to determine the extent of overlap with Oregon Spotted Frog FID. I found that the bullfrog strike distance significantly overlaps the FID of all ages of Oregon Spotted Frogs from the bullfrog-free site but only that of youngest (recently metamorphosed) frogs at the site of co-occurrence. Older Oregon Spotted Frogs from the site of co-occurrence generally escaped at distances greater than the strike distance of bullfrogs. I also collected > 880 bullfrogs from the site of co-occurrence and analyzed the stomach contents to assess their dietary trends. I found that bullfrogs consume Oregon Spotted Frogs at the site, but do not eat the larger (older) frogs. Moreover, the body size ratio between Oregon Spotted Frogs as prey and bullfrogs as predators suggests that nearly all of the adult size distribution of bullfrogs at Conboy would be incapable of preying on adult Oregon Spotted Frogs. Collectively, these studies strongly suggest that bullfrogs have altered the escape behavior of Oregon Spotted Frogs at Conboy Lake and that most adult Oregon Spotted Frogs at Conboy may have a size-based release from predation by bullfrogs. Implicit in this finding is that bullfrogs may pose a real threat via predation to other Oregon Spotted Frog populations with which they might come into contact where the distribution of bullfrog body sizes differ substantially from that at Conboy Lake. Title: Quantifying the Impacts of a Novel Predator: The Distinctive Case of the Oregon Spotted Frog (<i>Rana pretiosa</i>) and the Invasive American Bullfrog (<i>Rana (Aquarana) catesbeiana</i>) Author: Tidwell, Kyle Scott Year: 2017 The decline of the Oregon Spotted Frog (Rana pretiosa), a Pacific Northwest endemic now federally listed as threatened, has been attributed to several aspects of ecosystem alteration, primarily habitat degradation and loss. The introduced American Bullfrog (Rana (Aquarana) catesbeiana) has been widely implicated in those declines, but the basis of that contention has been difficult to characterize. The bullfrog occurring at every site of recent Oregon Spotted Frog extirpation has focused concern about its impact. Here, I present a suite of interconnected studies that examine the behavioral ecology of both species to better understand the potential for bullfrog-mediated Oregon Spotted Frog extirpation. I quantified Oregon Spotted Frog anti-predator behavior from the only known population successfully co-occurring with bullfrogs (Conboy Lake) and a population devoid of bullfrog impact (Big Marsh), and compared these behaviors to the predatory traits of the bullfrog. The initial study revealed that captive-reared individuals from the Oregon Spotted Frog population that has successfully co-occurred with bullfrogs respond faster to a predatory stimulus (measured as latency to response) than Oregon Spotted Frogs from a population not to exposed to bullfrogs. Subsequent field investigations of the approach distance allowed by a predator stimulus before taking evasive action (termed the flight initiation distance: FID) conducted with the Oregon Spotted Frog population co-occurring with bullfrogs first demonstrated that FID of recently metamorphosed bullfrogs is consistently greater than that of recently metamorphosed Oregon Spotted Frogs. Further, examination of FID across all post-metamorphic age classes of Oregon Spotted Frogs revealed that older frogs do not allow as close approach as recently metamorphosed Oregon Spotted Frogs. This age class shift in FID did not occur in the Oregon Spotted Frog population not exposed to bullfrogs. In the latter population, FID did not differ among age classes. Since the bullfrog might be driving this age-based change in anti-predator behavior, I explored the variation in strike distance of bullfrogs from the site of co-occurrence in both the field and laboratory to determine the extent of overlap with Oregon Spotted Frog FID. I found that the bullfrog strike distance significantly overlaps the FID of all ages of Oregon Spotted Frogs from the bullfrog-free site but only that of youngest (recently metamorphosed) frogs at the site of co-occurrence. Older Oregon Spotted Frogs from the site of co-occurrence generally escaped at distances greater than the strike distance of bullfrogs. I also collected > 880 bullfrogs from the site of co-occurrence and analyzed the stomach contents to assess their dietary trends. I found that bullfrogs consume Oregon Spotted Frogs at the site, but do not eat the larger (older) frogs. Moreover, the body size ratio between Oregon Spotted Frogs as prey and bullfrogs as predators suggests that nearly all of the adult size distribution of bullfrogs at Conboy would be incapable of preying on adult Oregon Spotted Frogs. Collectively, these studies strongly suggest that bullfrogs have altered the escape behavior of Oregon Spotted Frogs at Conboy Lake and that most adult Oregon Spotted Frogs at Conboy may have a size-based release from predation by bullfrogs. Implicit in this finding is that bullfrogs may pose a real threat via predation to other Oregon Spotted Frog populations with which they might come into contact where the distribution of bullfrog body sizes differ substantially from that at Conboy Lake. Close

• 63. [Article] Lambda Alpha Anthropology Honors Society (LAB): Bridging The Gap Between Coursework And Career

  Many anthropology majors gain an academic familiarity with the subject through coursework, but lack an understanding of how to utilize their anthropological skills outside of academia in future careers. ...

  Citation × Citation Citation Abstract Copy Title: Lambda Alpha Anthropology Honors Society (LAB): Bridging The Gap Between Coursework And Career Author: Stein, Adriana, Berganini, Stefanie Year: 2015 Many anthropology majors gain an academic familiarity with the subject through coursework, but lack an understanding of how to utilize their anthropological skills outside of academia in future careers. To remedy this issue, the Lambda Alpha Beta Honor Society (LAB), a student-led anthropology organization at Portland State University, provides opportunities for participation in events that get students involved with our local community, such as non-profit organizations and local cultural institutions. Some of these organizations include the Oregon Museum of Science and Industry (OMSI), Clark Public Utilities, The Ridgefield Wildlife Refuge, Potluck in the Park, and Habitat for Humanity. As an unfunded student group, LAB provides opportunities for students at no cost that simultaneously boost their career while also giving back to the community. We also have spearheaded the first crowdsourcing fundraiser in the anthropology department in cooperation with the PSU Foundation to raise money to update our PSU anthropological research photography exhibit. Furthermore, we helped apply for funding to send PSU graduate students to present their research at the Society for Applied Anthropology Conference (SfAA) in Pittsburgh, PA. This conference provides a major networking opportunity for our students and assures our relationship within the applied anthropology subfield in general. Therefore, LAB provides an example of a student group that bridges the gap between studying anthropology in the classroom and practicing anthropology as a career. Many anthropology majors gain an academic familiarity with the subject through coursework, but lack an understanding of how to utilize their anthropological skills outside of academia in future careers. To remedy this issue, the Lambda Alpha Beta Honor Society (LAB), a student-led anthropology organization at Portland State University, provides opportunities for participation in events that get students involved with our local community, such as non-profit organizations and local cultural institutions. Some of these organizations include the Oregon Museum of Science and Industry (OMSI), Clark Public Utilities, The Ridgefield Wildlife Refuge, Potluck in the Park, and Habitat for Humanity. As an unfunded student group, LAB provides opportunities for students at no cost that simultaneously boost their career while also giving back to the community. We also have spearheaded the first crowdsourcing fundraiser in the anthropology department in cooperation with the PSU Foundation to raise money to update our PSU anthropological research photography exhibit. Furthermore, we helped apply for funding to send PSU graduate students to present their research at the Society for Applied Anthropology Conference (SfAA) in Pittsburgh, PA. This conference provides a major networking opportunity for our students and assures our relationship within the applied anthropology subfield in general. Therefore, LAB provides an example of a student group that bridges the gap between studying anthropology in the classroom and practicing anthropology as a career. Title: Lambda Alpha Anthropology Honors Society (LAB): Bridging The Gap Between Coursework And Career Author: Stein, Adriana, Berganini, Stefanie Year: 2015 Many anthropology majors gain an academic familiarity with the subject through coursework, but lack an understanding of how to utilize their anthropological skills outside of academia in future careers. To remedy this issue, the Lambda Alpha Beta Honor Society (LAB), a student-led anthropology organization at Portland State University, provides opportunities for participation in events that get students involved with our local community, such as non-profit organizations and local cultural institutions. Some of these organizations include the Oregon Museum of Science and Industry (OMSI), Clark Public Utilities, The Ridgefield Wildlife Refuge, Potluck in the Park, and Habitat for Humanity. As an unfunded student group, LAB provides opportunities for students at no cost that simultaneously boost their career while also giving back to the community. We also have spearheaded the first crowdsourcing fundraiser in the anthropology department in cooperation with the PSU Foundation to raise money to update our PSU anthropological research photography exhibit. Furthermore, we helped apply for funding to send PSU graduate students to present their research at the Society for Applied Anthropology Conference (SfAA) in Pittsburgh, PA. This conference provides a major networking opportunity for our students and assures our relationship within the applied anthropology subfield in general. Therefore, LAB provides an example of a student group that bridges the gap between studying anthropology in the classroom and practicing anthropology as a career. Many anthropology majors gain an academic familiarity with the subject through coursework, but lack an understanding of how to utilize their anthropological skills outside of academia in future careers. To remedy this issue, the Lambda Alpha Beta Honor Society (LAB), a student-led anthropology organization at Portland State University, provides opportunities for participation in events that get students involved with our local community, such as non-profit organizations and local cultural institutions. Some of these organizations include the Oregon Museum of Science and Industry (OMSI), Clark Public Utilities, The Ridgefield Wildlife Refuge, Potluck in the Park, and Habitat for Humanity. As an unfunded student group, LAB provides opportunities for students at no cost that simultaneously boost their career while also giving back to the community. We also have spearheaded the first crowdsourcing fundraiser in the anthropology department in cooperation with the PSU Foundation to raise money to update our PSU anthropological research photography exhibit. Furthermore, we helped apply for funding to send PSU graduate students to present their research at the Society for Applied Anthropology Conference (SfAA) in Pittsburgh, PA. This conference provides a major networking opportunity for our students and assures our relationship within the applied anthropology subfield in general. Therefore, LAB provides an example of a student group that bridges the gap between studying anthropology in the classroom and practicing anthropology as a career. Close

• 64. [Article] The Impacts of Natural Flood Management Approaches on In-Channel Sediment Quality

  Natural Flood Management (NFM) techniques aim to reduce downstream flooding by storing and slowing the flow of stormwater to river channels. These techniques include a range of measures, including setback ...

  Citation × Citation Citation Abstract Copy Title: The Impacts of Natural Flood Management Approaches on In-Channel Sediment Quality Author: Janes, Victoria, Grabowski, Robert, Mant, J., Allen, Deonie Year: 2017 Natural Flood Management (NFM) techniques aim to reduce downstream flooding by storing and slowing the flow of stormwater to river channels. These techniques include a range of measures, including setback stormwater outfalls and the physical restoration of channels and floodplains, to improve the natural functioning of catchments. An additional benefit of NFM measures is the potential reduction in sediment and pollutant delivery to the channel. Urban development releases a variety of heavy metal and nutrient pollutants that enter rivers through stormwater outfalls with adverse effects on the aquatic ecosystem. In this study, the influence of channel modification and quality of the river habitat on the sediment quality surrounding stormwater outfalls was assessed. Sediment samples were taken at several outfalls within the Johnson Creek catchment, Oregon, USA, and analysed for a variety of urban pollutants. The level of river habitat quality and modification at each site were assessed using a semi-quantitative scoring methodology. Significant increases in pollutant levels were observed at outfalls, with a greater and more variable increase at direct compared to setback outfalls. Removal efficiency of certain pollutants was found to be significantly correlated to the level of habitat quality or modification (for Fe, Ba, Sn, Mg, P, K) indicating that more natural reaches had greater potential for pollutant removal. The findings highlight the multiple benefits associated with NFM and river restoration approaches in relation to sediment quality and pollutant content. Title: The Impacts of Natural Flood Management Approaches on In-Channel Sediment Quality Author: Janes, Victoria, Grabowski, Robert, Mant, J., Allen, Deonie Year: 2017 Natural Flood Management (NFM) techniques aim to reduce downstream flooding by storing and slowing the flow of stormwater to river channels. These techniques include a range of measures, including setback stormwater outfalls and the physical restoration of channels and floodplains, to improve the natural functioning of catchments. An additional benefit of NFM measures is the potential reduction in sediment and pollutant delivery to the channel. Urban development releases a variety of heavy metal and nutrient pollutants that enter rivers through stormwater outfalls with adverse effects on the aquatic ecosystem. In this study, the influence of channel modification and quality of the river habitat on the sediment quality surrounding stormwater outfalls was assessed. Sediment samples were taken at several outfalls within the Johnson Creek catchment, Oregon, USA, and analysed for a variety of urban pollutants. The level of river habitat quality and modification at each site were assessed using a semi-quantitative scoring methodology. Significant increases in pollutant levels were observed at outfalls, with a greater and more variable increase at direct compared to setback outfalls. Removal efficiency of certain pollutants was found to be significantly correlated to the level of habitat quality or modification (for Fe, Ba, Sn, Mg, P, K) indicating that more natural reaches had greater potential for pollutant removal. The findings highlight the multiple benefits associated with NFM and river restoration approaches in relation to sediment quality and pollutant content. Close

• 65. [Article] The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science

  In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project ...

  Citation × Citation Citation Abstract Copy Title: The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science Author: Gulick, Kristen S. Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Authors: Kristen S. Gulick, Marion Dresner, Nikkie West Presenter: Kristen S. Gulick Title: The Importance of Urban Habitat Connectivity and Influence on Native Avian Species and Community Science Author: Gulick, Kristen S. Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Authors: Kristen S. Gulick, Marion Dresner, Nikkie West Presenter: Kristen S. Gulick Close

• 66. [Article] Divergent trends in ecosystem services under different climate-management futures in a fire-prone forest landscape

  While ecosystem services and climate change are often examined independently, quantitative assessments integrating these fields are needed to inform future land management decisions. Using climate-informed ...

  Citation × Citation Citation Abstract Copy Title: Divergent trends in ecosystem services under different climate-management futures in a fire-prone forest landscape Author: Halofsky, Joshua S., Halofsky, Jessica E., Hemstrom, Miles A., Morzillo, Anita T., Zhou, Xiaoping, Donato, Daniel C. Year: 2017 While ecosystem services and climate change are often examined independently, quantitative assessments integrating these fields are needed to inform future land management decisions. Using climate-informed state-and-transition simulations, we examined projected trends and trade-offs for a suite of ecosystem services under four climate change scenarios and two management scenarios (active management emphasizing fuel treatments and no management other than fire suppression) in a fire-prone landscape of dry and moist mixed-conifer forests in central Oregon, USA. Focal ecosystem services included fire potential (regulating service), timber volume (provisioning service), and potential wildlife habitat (supporting service). Projections without climate change suggested active management in dry mixed-conifer forests would create more open forest structures, reduce crown fire potential, and maintain timber stocks, while in moist mixed-conifer forests, active management would reduce crown fire potential but at the expense of timber stocks. When climate change was considered, however, trends in most ecosystem services changed substantially, with large increases in wildfire area predominating broad-scale trends in outputs, regardless of management approach (e.g., strong declines in timber stocks and habitat for closed-forest wildlife species). Active management still had an influence under a changing climate, but as a moderator of the strong climate-driven trends rather than being a principal driver of ecosystem service outputs. These results suggest projections of future ecosystem services that do not consider climate change may result in unrealistic expectations of benefits. Title: Divergent trends in ecosystem services under different climate-management futures in a fire-prone forest landscape Author: Halofsky, Joshua S., Halofsky, Jessica E., Hemstrom, Miles A., Morzillo, Anita T., Zhou, Xiaoping, Donato, Daniel C. Year: 2017 While ecosystem services and climate change are often examined independently, quantitative assessments integrating these fields are needed to inform future land management decisions. Using climate-informed state-and-transition simulations, we examined projected trends and trade-offs for a suite of ecosystem services under four climate change scenarios and two management scenarios (active management emphasizing fuel treatments and no management other than fire suppression) in a fire-prone landscape of dry and moist mixed-conifer forests in central Oregon, USA. Focal ecosystem services included fire potential (regulating service), timber volume (provisioning service), and potential wildlife habitat (supporting service). Projections without climate change suggested active management in dry mixed-conifer forests would create more open forest structures, reduce crown fire potential, and maintain timber stocks, while in moist mixed-conifer forests, active management would reduce crown fire potential but at the expense of timber stocks. When climate change was considered, however, trends in most ecosystem services changed substantially, with large increases in wildfire area predominating broad-scale trends in outputs, regardless of management approach (e.g., strong declines in timber stocks and habitat for closed-forest wildlife species). Active management still had an influence under a changing climate, but as a moderator of the strong climate-driven trends rather than being a principal driver of ecosystem service outputs. These results suggest projections of future ecosystem services that do not consider climate change may result in unrealistic expectations of benefits. Close

• 67. [Article] Tracking Fish and Human Response to Earthquakes on the Northwest Coast of Washington State, USA: A Preliminary Study at Tse-whit-zen

  Evidence of large earthquakes occurring along the Pacific Northwest Coast is reflected in coastal stratigraphy from Oregon to British Columbia, where there also exists an extensive archaeological record ...

  Citation × Citation Citation Abstract Copy Title: Tracking Fish and Human Response to Earthquakes on the Northwest Coast of Washington State, USA: A Preliminary Study at Tse-whit-zen Author: Mohlenhoff, Kathryn A., Butler, Virginia L. Year: 2017 Evidence of large earthquakes occurring along the Pacific Northwest Coast is reflected in coastal stratigraphy from Oregon to British Columbia, where there also exists an extensive archaeological record of Native American occupation. Tse-whit-zen, a large Native American village dating between ∼2800 yrs BP and the historic era, located on the Olympic Peninsula of Washington State, was excavated with exceptionally fine stratigraphic control allowing for precise comparison of these natural and cultural records. Here we report on the ∼10,000 fish remains from one 2 × 2 m excavation block; this assemblage spans the timing of one seismic event, allowing study of changes in relative taxonomic abundance through time that may coincide with earthquakes or other environmental changes. Results indicate a wide variety of fish taxa were used throughout the dated occupation. Comparisons of fish use before and after one earthquake event shows a decline in salmon (Oncorhynchus sp.) and an increase in herring (Clupea pallasii), shifts consistent with earthquake-related habitat loss. This serves as a pilot study for a large-scale collaborative project that is drawing on the range in animal types (invertebrates, mammals, birds, and fishes) to assess human response to gradual and abrupt environmental change at Tse-whit-zen. Title: Tracking Fish and Human Response to Earthquakes on the Northwest Coast of Washington State, USA: A Preliminary Study at Tse-whit-zen Author: Mohlenhoff, Kathryn A., Butler, Virginia L. Year: 2017 Evidence of large earthquakes occurring along the Pacific Northwest Coast is reflected in coastal stratigraphy from Oregon to British Columbia, where there also exists an extensive archaeological record of Native American occupation. Tse-whit-zen, a large Native American village dating between ∼2800 yrs BP and the historic era, located on the Olympic Peninsula of Washington State, was excavated with exceptionally fine stratigraphic control allowing for precise comparison of these natural and cultural records. Here we report on the ∼10,000 fish remains from one 2 × 2 m excavation block; this assemblage spans the timing of one seismic event, allowing study of changes in relative taxonomic abundance through time that may coincide with earthquakes or other environmental changes. Results indicate a wide variety of fish taxa were used throughout the dated occupation. Comparisons of fish use before and after one earthquake event shows a decline in salmon (Oncorhynchus sp.) and an increase in herring (Clupea pallasii), shifts consistent with earthquake-related habitat loss. This serves as a pilot study for a large-scale collaborative project that is drawing on the range in animal types (invertebrates, mammals, birds, and fishes) to assess human response to gradual and abrupt environmental change at Tse-whit-zen. Close

• 68. [Article] Analyzing Dam Feasibility in the Willamette River Watershed

  This study conducts a dam-scale cost versus benefit analysis in order to explore the feasibility of each the 13 U.S. Army Corps of Engineers (USACE) commissioned dams in Oregon’s Willamette River network. ...

  Citation × Citation Citation Abstract Copy Title: Analyzing Dam Feasibility in the Willamette River Watershed Author: Nagel, Alexander Cameron Year: 2017 This study conducts a dam-scale cost versus benefit analysis in order to explore the feasibility of each the 13 U.S. Army Corps of Engineers (USACE) commissioned dams in Oregon’s Willamette River network. Constructed between 1941 and 1969, these structures function in collaboration to comprise the Willamette River Basin Reservoir System (WRBRS). The motivation for this project derives from a growing awareness of the biophysical impacts that dam structures can have on riparian habitats. This project compares each of the 13 dams being assessed, to prioritize their level of utility within the system. The study takes the metrics from the top three services (flood regulation, hydropower generation and recreation) and disservices (fish mortality, structural risk and water temperature hazards) and creates a rubric that scores the feasibility of each dam within the system. Within a range between 0 to 3 for three dam services and 0 to -4.5 for two disservices, the overall calculated score elucidates for each structure whether its contribution to the WRBRS is positive or negative. Further analysis searches for spatiotemporal trends such as anomalous tributaries or magnified structural risk for structures exceeding a certain age. GIS data from the National Inventory of Dams (NID), U.S. Geologic Survey (USGS) water measurements, raw data from USACE, and peer-reviewed studies comprise the statistics that generate results for this analysis. The computed scores for each dam yield an average overall score of -1.31, and nine of the 13 structures have negative results, indicating that the WRBRS faces challenges going forward. The study seeks to contribute to the increasingly relevant examination of dam networks at the watershed scale. Title: Analyzing Dam Feasibility in the Willamette River Watershed Author: Nagel, Alexander Cameron Year: 2017 This study conducts a dam-scale cost versus benefit analysis in order to explore the feasibility of each the 13 U.S. Army Corps of Engineers (USACE) commissioned dams in Oregon’s Willamette River network. Constructed between 1941 and 1969, these structures function in collaboration to comprise the Willamette River Basin Reservoir System (WRBRS). The motivation for this project derives from a growing awareness of the biophysical impacts that dam structures can have on riparian habitats. This project compares each of the 13 dams being assessed, to prioritize their level of utility within the system. The study takes the metrics from the top three services (flood regulation, hydropower generation and recreation) and disservices (fish mortality, structural risk and water temperature hazards) and creates a rubric that scores the feasibility of each dam within the system. Within a range between 0 to 3 for three dam services and 0 to -4.5 for two disservices, the overall calculated score elucidates for each structure whether its contribution to the WRBRS is positive or negative. Further analysis searches for spatiotemporal trends such as anomalous tributaries or magnified structural risk for structures exceeding a certain age. GIS data from the National Inventory of Dams (NID), U.S. Geologic Survey (USGS) water measurements, raw data from USACE, and peer-reviewed studies comprise the statistics that generate results for this analysis. The computed scores for each dam yield an average overall score of -1.31, and nine of the 13 structures have negative results, indicating that the WRBRS faces challenges going forward. The study seeks to contribute to the increasingly relevant examination of dam networks at the watershed scale. Close

• 69. [Article] Biofouling Management in the Pacific Northwest and Predation on Native versus Non-native Ascidians

  Marine non-native species threaten economic and environmental health, making it crucial to understand factors that make them successful. Research on these species, therefore, allows for greater preparedness ...

  Citation × Citation Citation Abstract Copy Title: Biofouling Management in the Pacific Northwest and Predation on Native versus Non-native Ascidians Author: Kincaid, Erin Suzanne Year: 2016 Marine non-native species threaten economic and environmental health, making it crucial to understand factors that make them successful. Research on these species, therefore, allows for greater preparedness and informed management of biological invasions and increases understanding of elements structuring biological communities. Among the marine non-native species, and particularly the fouling community, non-native ascidians are a taxon of particular concern because they can crowd out native benthic species and smother mariculture products. This thesis addresses management for ascidians and other fouling organisms and includes research on the invasiveness of this taxon in addition to the invasibility of recipient fouling communities. On the West Coast of the U.S., limited efforts have been made to coordinate biofouling management across states, despite the myriad vectors increasing propagule pressure over time along coastal states. Building on recent state and local efforts, I developed a Pacific Regional Biofouling Plan for the states of Oregon and Washington to help start a consensus-driven process by which these states could create a forum for more comprehensive coordination efforts, following California's lead. As states address authority gaps, the biofouling management framework I've written is meant to be used to guide the conversation between managers as various stages of coastal management are realized. To better inform the scope and efficacy of management and regulatory efforts, the study of invasions ecology asks and aims to answer questions regarding recipient community interactions and characteristics of the non-native species themselves. Studies that identify characteristics that make ascidians successful (invasiveness) and determine the influence native communities have on their success (invasibility) are important for assessing overall risk of establishment and spread from non-native ascidians. Therefore, I aimed to: 1) explore the hypothesis that fouling communities on suspended, artificial structures are more invasible than benthic habitats; and 2) identify characteristics influencing predation patterns on the native Distaplia occidentalis versus non-native ascidian species using mensurative and experimental studies in Charleston Marina, Oregon. I conducted a series of feeding assays, surveys, and a caloric content analysis. Feeding assays were conducted with a suite of predators. The flatworm predator (Eurylepta leoparda) was found to be highly selective on the native ascidian Distaplia occidentalis, and only preyed on whole colony samples. Feeding assay data suggest that test (tunic) structure or thickness may be an influential factor affecting nudibranch (Hermissenda crassicornis) predation rates on native versus non-native ascidians, with greater predation on the native ascidian species. Non-native ascidians may escape predation in floating but not benthic environments on the Oregon coast due to their palatability characteristics, likely tunic structure and low caloric content. In this case, this suite of predators may indirectly facilitate the invasion of docks but provide at least partial resistance to the invasion of natural benthic areas. The chapters herein address gaps in management and scientific knowledge regarding non-native species of the marine fouling community. Future work enhanced by my efforts could include the development of the coastal biofouling management plan, coordinated by the Western Regional Panel on Aquatic Invasive Species Coastal Committee, and broadening the geographic and taxonomic scope of my research with a more comprehensive study of predator-prey interactions involving non-native ascidians and a diverse suite of predators. These interactions may be an important factor in explaining the success of ascidians and other fouling organisms on floating structures and lack of success on nearby benthic substrata. Title: Biofouling Management in the Pacific Northwest and Predation on Native versus Non-native Ascidians Author: Kincaid, Erin Suzanne Year: 2016 Marine non-native species threaten economic and environmental health, making it crucial to understand factors that make them successful. Research on these species, therefore, allows for greater preparedness and informed management of biological invasions and increases understanding of elements structuring biological communities. Among the marine non-native species, and particularly the fouling community, non-native ascidians are a taxon of particular concern because they can crowd out native benthic species and smother mariculture products. This thesis addresses management for ascidians and other fouling organisms and includes research on the invasiveness of this taxon in addition to the invasibility of recipient fouling communities. On the West Coast of the U.S., limited efforts have been made to coordinate biofouling management across states, despite the myriad vectors increasing propagule pressure over time along coastal states. Building on recent state and local efforts, I developed a Pacific Regional Biofouling Plan for the states of Oregon and Washington to help start a consensus-driven process by which these states could create a forum for more comprehensive coordination efforts, following California's lead. As states address authority gaps, the biofouling management framework I've written is meant to be used to guide the conversation between managers as various stages of coastal management are realized. To better inform the scope and efficacy of management and regulatory efforts, the study of invasions ecology asks and aims to answer questions regarding recipient community interactions and characteristics of the non-native species themselves. Studies that identify characteristics that make ascidians successful (invasiveness) and determine the influence native communities have on their success (invasibility) are important for assessing overall risk of establishment and spread from non-native ascidians. Therefore, I aimed to: 1) explore the hypothesis that fouling communities on suspended, artificial structures are more invasible than benthic habitats; and 2) identify characteristics influencing predation patterns on the native Distaplia occidentalis versus non-native ascidian species using mensurative and experimental studies in Charleston Marina, Oregon. I conducted a series of feeding assays, surveys, and a caloric content analysis. Feeding assays were conducted with a suite of predators. The flatworm predator (Eurylepta leoparda) was found to be highly selective on the native ascidian Distaplia occidentalis, and only preyed on whole colony samples. Feeding assay data suggest that test (tunic) structure or thickness may be an influential factor affecting nudibranch (Hermissenda crassicornis) predation rates on native versus non-native ascidians, with greater predation on the native ascidian species. Non-native ascidians may escape predation in floating but not benthic environments on the Oregon coast due to their palatability characteristics, likely tunic structure and low caloric content. In this case, this suite of predators may indirectly facilitate the invasion of docks but provide at least partial resistance to the invasion of natural benthic areas. The chapters herein address gaps in management and scientific knowledge regarding non-native species of the marine fouling community. Future work enhanced by my efforts could include the development of the coastal biofouling management plan, coordinated by the Western Regional Panel on Aquatic Invasive Species Coastal Committee, and broadening the geographic and taxonomic scope of my research with a more comprehensive study of predator-prey interactions involving non-native ascidians and a diverse suite of predators. These interactions may be an important factor in explaining the success of ascidians and other fouling organisms on floating structures and lack of success on nearby benthic substrata. Close

• 70. [Article] A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry

  Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. ...

  Citation × Citation Citation Abstract Copy Title: A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry Author: Johnson, Amelia Lee Year: 2016 Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations. Title: A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (<i>Oncorhynchus kisutch</i>) Movement Timing and Growth Patterns Prior to Ocean Entry Author: Johnson, Amelia Lee Year: 2016 Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations. Close

• 71. [Article] The Effect of Artificial Light on Wildlife Use of a Passage Structure

  Barriers to animal movement can isolate populations, impacting their genetic diversity, susceptibility to disease, and access to resources. Barriers to movement may be caused by artificial light, which ...

  Citation × Citation Citation Abstract Copy Title: The Effect of Artificial Light on Wildlife Use of a Passage Structure Author: Bliss-Ketchum, Leslie, de Rivera, Catherine, Turner, Brian C., Weisbaum, Dolores Year: 2016 Barriers to animal movement can isolate populations, impacting their genetic diversity, susceptibility to disease, and access to resources. Barriers to movement may be caused by artificial light, which is known to disrupt bird, sea turtle, and bat behavior, but few studies have experimentally investigated the effects of artificial light on movement for a suite of terrestrial vertebrates. Therefore, we studied the effect of ecological light pollution on animal usage of a bridge under-road passage structure. On a weekly basis, sections of the structure were subjected to different light treatments including no light added, followed by a Reference period when lights were off in all the structure sections. Sand track data revealed use by 23 mammals, birds, reptiles and amphibians, nine of which had > 30 tracks for species-level analysis. Columbia black-tailed deer (Odocoileus hemionus columbianus) traversed under unlit bridge sections much less when neighboring sections were lit compared to when none were, suggesting avoidance due to any nearby presence of artificial light. Similarly, deer mouse (Peromyscus maniculatus) and opossum (Didelphis virginiana) track paths were less frequent in the lit sections than the ambient. Crossing was correlated with temporal or spatial factors but not light for three of the other species. These findings suggest that artificial light may be reducing habitat connectivity for some species though not providing a strong barrier for others. Such information is needed to inform mitigation of habitat fragmentation in the face of expanding urbanization. Title: The Effect of Artificial Light on Wildlife Use of a Passage Structure Author: Bliss-Ketchum, Leslie, de Rivera, Catherine, Turner, Brian C., Weisbaum, Dolores Year: 2016 Barriers to animal movement can isolate populations, impacting their genetic diversity, susceptibility to disease, and access to resources. Barriers to movement may be caused by artificial light, which is known to disrupt bird, sea turtle, and bat behavior, but few studies have experimentally investigated the effects of artificial light on movement for a suite of terrestrial vertebrates. Therefore, we studied the effect of ecological light pollution on animal usage of a bridge under-road passage structure. On a weekly basis, sections of the structure were subjected to different light treatments including no light added, followed by a Reference period when lights were off in all the structure sections. Sand track data revealed use by 23 mammals, birds, reptiles and amphibians, nine of which had > 30 tracks for species-level analysis. Columbia black-tailed deer (Odocoileus hemionus columbianus) traversed under unlit bridge sections much less when neighboring sections were lit compared to when none were, suggesting avoidance due to any nearby presence of artificial light. Similarly, deer mouse (Peromyscus maniculatus) and opossum (Didelphis virginiana) track paths were less frequent in the lit sections than the ambient. Crossing was correlated with temporal or spatial factors but not light for three of the other species. These findings suggest that artificial light may be reducing habitat connectivity for some species though not providing a strong barrier for others. Such information is needed to inform mitigation of habitat fragmentation in the face of expanding urbanization. Close

• 72. [Article] Transcriptomic Regulation of Alternative Phenotypic Trajectories in Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i>

  The Annual Killifish, Austrofundulus limnaeus, survives the seasonal drying of their pond habitat in the form of embryos entering diapause midway through development. The diapause trajectory is one of ...

  Citation × Citation Citation Abstract Copy Title: Transcriptomic Regulation of Alternative Phenotypic Trajectories in Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i> Author: Romney, Amie Lynn Thomas Year: 2017 The Annual Killifish, Austrofundulus limnaeus, survives the seasonal drying of their pond habitat in the form of embryos entering diapause midway through development. The diapause trajectory is one of two developmental phenotypes. Alternatively, individuals can "escape" entry into diapause and develop continuously until hatching. The alternative phenotypes of A. limnaeus are a form of developmental plasticity that provides this species with a physiological adaption for surviving stressful environments. The developmental trajectory of an embryo is not distinguishable morphologically upon fertilization and phenotype is believed to be influenced by maternal provisioning within the egg based on observations of offspring phenotype production. However, incubation temperature may override any such maternal pattern suggesting an environmental influence on the regulation of developmental trajectory. We hypothesize that maternally packaged gene products coordinate the cellular events prior to the maternal-to-zygotic transition (MTZ) that determine developmental trajectory in embryos of A. limnaeus. In addition, we propose that environmentally responsive gene expression after the MTZ can sustain or override any such maternal provisioning. Using high-throughput RNA-sequencing, we have generated transcriptomic profiles of protein-coding messenger RNA and noncoding RNA during development in A. limnaeus. Embryos destined for either the diapause or escape phenotypes display unique expression profiles immediately upon fertilization that support hormone synthesis, well before the stage when phenotypes are morphologically distinct. At stages when the trajectories diverge from one another, differential expression of the vitamin D receptor signaling pathway suggests that vitamin D signaling may be a key regulator of developmental phenotype in this species. These data provide a critical link between maternal and environmental influences on the genetic regulation of phenotypic plasticity. These results will not only impact our understanding of the genetic mechanisms that regulate entrance into diapause, but also provide insight into the epigenetic regulation of gene expression and development. Uncovering genetic mechanisms in a system exhibiting alternative developmental trajectories will elucidate the role of maternal packaging in regulating developmental decisions, and in sustaining metabolic depression during diapause. Title: Transcriptomic Regulation of Alternative Phenotypic Trajectories in Embryos of the Annual Killifish <i>Austrofundulus limnaeus</i> Author: Romney, Amie Lynn Thomas Year: 2017 The Annual Killifish, Austrofundulus limnaeus, survives the seasonal drying of their pond habitat in the form of embryos entering diapause midway through development. The diapause trajectory is one of two developmental phenotypes. Alternatively, individuals can "escape" entry into diapause and develop continuously until hatching. The alternative phenotypes of A. limnaeus are a form of developmental plasticity that provides this species with a physiological adaption for surviving stressful environments. The developmental trajectory of an embryo is not distinguishable morphologically upon fertilization and phenotype is believed to be influenced by maternal provisioning within the egg based on observations of offspring phenotype production. However, incubation temperature may override any such maternal pattern suggesting an environmental influence on the regulation of developmental trajectory. We hypothesize that maternally packaged gene products coordinate the cellular events prior to the maternal-to-zygotic transition (MTZ) that determine developmental trajectory in embryos of A. limnaeus. In addition, we propose that environmentally responsive gene expression after the MTZ can sustain or override any such maternal provisioning. Using high-throughput RNA-sequencing, we have generated transcriptomic profiles of protein-coding messenger RNA and noncoding RNA during development in A. limnaeus. Embryos destined for either the diapause or escape phenotypes display unique expression profiles immediately upon fertilization that support hormone synthesis, well before the stage when phenotypes are morphologically distinct. At stages when the trajectories diverge from one another, differential expression of the vitamin D receptor signaling pathway suggests that vitamin D signaling may be a key regulator of developmental phenotype in this species. These data provide a critical link between maternal and environmental influences on the genetic regulation of phenotypic plasticity. These results will not only impact our understanding of the genetic mechanisms that regulate entrance into diapause, but also provide insight into the epigenetic regulation of gene expression and development. Uncovering genetic mechanisms in a system exhibiting alternative developmental trajectories will elucidate the role of maternal packaging in regulating developmental decisions, and in sustaining metabolic depression during diapause. Close

• 73. [Article] Microplastic Concentrations in Crassotrea gigas: Establishing a Baseline of Microplastic Contamination in Oregon’s Oyster Aquacultures

  Anthropogenic debris is “found across all habitats in the ocean, including coral reefs, shallow bays, estuaries, the open ocean, and the deep sea” (Rochman et al., 2015). Microplastic pollution is widespread ...

  Citation × Citation Citation Abstract Copy Title: Microplastic Concentrations in Crassotrea gigas: Establishing a Baseline of Microplastic Contamination in Oregon’s Oyster Aquacultures Author: Jauregui, Mia K. Year: 2017 Anthropogenic debris is “found across all habitats in the ocean, including coral reefs, shallow bays, estuaries, the open ocean, and the deep sea” (Rochman et al., 2015). Microplastic pollution is widespread in the marine environment and poses a threat to a variety of organisms, including commercial shellfish grown for human consumption. The aim of this study is to establish a baseline of microplastic evidence in Oregon through the examination of Crassotrea gigas--or the Pacific Oyster. In addition it hopes to determine if there are differences in microplastic concentration geographically and temporally. Five oyster samples were collected in Spring 2017 from a total of six sites, three Northern and three Southern to establish a geographic range of XXXX Pacific oyster aquacultures. Another five oyster samples were collected from a single Northern site during Summer 2017 to address temporal variation. Microplastics were extracted using a 10% KOH solution and identified under a dissecting microscope. The research suggests that there is no significance difference geographically or temporally. However, the study does establish the uptake of microfibers by Pacific oysters, which could not only harm the organism, but raises concern for human consumption. Title: Microplastic Concentrations in Crassotrea gigas: Establishing a Baseline of Microplastic Contamination in Oregon’s Oyster Aquacultures Author: Jauregui, Mia K. Year: 2017 Anthropogenic debris is “found across all habitats in the ocean, including coral reefs, shallow bays, estuaries, the open ocean, and the deep sea” (Rochman et al., 2015). Microplastic pollution is widespread in the marine environment and poses a threat to a variety of organisms, including commercial shellfish grown for human consumption. The aim of this study is to establish a baseline of microplastic evidence in Oregon through the examination of Crassotrea gigas--or the Pacific Oyster. In addition it hopes to determine if there are differences in microplastic concentration geographically and temporally. Five oyster samples were collected in Spring 2017 from a total of six sites, three Northern and three Southern to establish a geographic range of XXXX Pacific oyster aquacultures. Another five oyster samples were collected from a single Northern site during Summer 2017 to address temporal variation. Microplastics were extracted using a 10% KOH solution and identified under a dissecting microscope. The research suggests that there is no significance difference geographically or temporally. However, the study does establish the uptake of microfibers by Pacific oysters, which could not only harm the organism, but raises concern for human consumption. Close

• 74. [Article] Substrate Age Influences Species Richness and Community Composition of Calicioid Lichens and Fungi on Wooden Buildings

  Identifying processes that drive epiphytic lichen diversity and succession is important for directing conservation efforts and developing forest management plans for the maintenance of biodiversity and ...

  Citation × Citation Citation Abstract Copy Title: Substrate Age Influences Species Richness and Community Composition of Calicioid Lichens and Fungi on Wooden Buildings Author: Peterson, Kate, Calabria, Lalita M., Miller, Jesse E.D., Brown-Clay, Jesse Year: 2017 Identifying processes that drive epiphytic lichen diversity and succession is important for directing conservation efforts and developing forest management plans for the maintenance of biodiversity and forest health. Stand age has been implicated as a key factor in driving epiphytic species diversity and community composition. However, understanding the influence of substrate age, independent of the many confounding variables that affect live and dead wood substrates in a forest habitat, can be difficult. To test the hypothesis that substrate age has distinct effects on lichen community assembly independent of surface area, we sampled communities of calicioid lichens and fungi growing on wooden buildings that ranged from 2 to 82 years old. We found a total of 17 species, with a strong positive correlation between species richness and substrate age. We also tested the effects of surface area on species richness and found no relationship between the two variables. Our results indicate that substrate age influenced community composition; non-lichenized calicioid species acted as early colonizers and six calicioid species were recorded only on the oldest substrate. Old-growth associate species were found on substrates of varying ages, implying that additional variables may also be responsible for the colonization of old-growth associate species. Copyright © 2017 by The American Bryological and Lichenological Society, Inc. Title: Substrate Age Influences Species Richness and Community Composition of Calicioid Lichens and Fungi on Wooden Buildings Author: Peterson, Kate, Calabria, Lalita M., Miller, Jesse E.D., Brown-Clay, Jesse Year: 2017 Identifying processes that drive epiphytic lichen diversity and succession is important for directing conservation efforts and developing forest management plans for the maintenance of biodiversity and forest health. Stand age has been implicated as a key factor in driving epiphytic species diversity and community composition. However, understanding the influence of substrate age, independent of the many confounding variables that affect live and dead wood substrates in a forest habitat, can be difficult. To test the hypothesis that substrate age has distinct effects on lichen community assembly independent of surface area, we sampled communities of calicioid lichens and fungi growing on wooden buildings that ranged from 2 to 82 years old. We found a total of 17 species, with a strong positive correlation between species richness and substrate age. We also tested the effects of surface area on species richness and found no relationship between the two variables. Our results indicate that substrate age influenced community composition; non-lichenized calicioid species acted as early colonizers and six calicioid species were recorded only on the oldest substrate. Old-growth associate species were found on substrates of varying ages, implying that additional variables may also be responsible for the colonization of old-growth associate species. Copyright © 2017 by The American Bryological and Lichenological Society, Inc. Close

• 75. [Article] Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon)

  The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater ...

  Citation × Citation Citation Abstract Copy Title: Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon) Author: Allen, Jennifer H., Odell, Turner, Babcock, Julia, Henrie, Charis Year: 2017 The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater sage-grouse while also acknowledging rural economic and community interests across eastern Oregon’s sagebrush range. A U.S. Fish and Wildlife Service (USFWS) preliminary finding that the sage-grouse warranted listing under the endangered species act, and a subsequent court settlement setting a deadline for a final listing decision were key drivers for SageCon participants to seek proactive solutions to protect the bird. A cadre of diverse Eastern Oregon stakeholders with experience working collaboratively on related public lands issues helped set the stage for the collaborative effort. As part of what the Department of the Interior described as a historic outcome, SageCon produced the 2015 Oregon Sage-Grouse Action Plan, which details voluntary and state-regulated conservation measures to preserve habitat and protect Oregon’s sage-grouse population from threats on public and private land. SageCon—as one part of a broader multi-state collaborative effort—led to a subsequent USFWS finding that the sage-grouse no longer warranted listing as endangered. In our study of this collaborative effort, we interviewed seventeen SageCon participants to identify collaborative approaches that may offer promise for other conservation and public policy efforts. We explored participant motivation for engaging in the process, collaborative process design, integration of science into the SageCon deliberations, and other experiences that interviewees found relevant. Title: Advancing Collaborative Solutions: Lessons from the Oregon Sage-Grouse Conservation Partnership (SageCon) Author: Allen, Jennifer H., Odell, Turner, Babcock, Julia, Henrie, Charis Year: 2017 The Sage-Grouse Conservation Partnership, also known as “SageCon,” was an unprecedented collaborative effort among federal, state, and private stakeholders to address landscape-scale threats to greater sage-grouse while also acknowledging rural economic and community interests across eastern Oregon’s sagebrush range. A U.S. Fish and Wildlife Service (USFWS) preliminary finding that the sage-grouse warranted listing under the endangered species act, and a subsequent court settlement setting a deadline for a final listing decision were key drivers for SageCon participants to seek proactive solutions to protect the bird. A cadre of diverse Eastern Oregon stakeholders with experience working collaboratively on related public lands issues helped set the stage for the collaborative effort. As part of what the Department of the Interior described as a historic outcome, SageCon produced the 2015 Oregon Sage-Grouse Action Plan, which details voluntary and state-regulated conservation measures to preserve habitat and protect Oregon’s sage-grouse population from threats on public and private land. SageCon—as one part of a broader multi-state collaborative effort—led to a subsequent USFWS finding that the sage-grouse no longer warranted listing as endangered. In our study of this collaborative effort, we interviewed seventeen SageCon participants to identify collaborative approaches that may offer promise for other conservation and public policy efforts. We explored participant motivation for engaging in the process, collaborative process design, integration of science into the SageCon deliberations, and other experiences that interviewees found relevant. Close

• 76. [Article] Test abstract

  This is a test abstract and can be deleted at any time. -- Amy The time is ripe for Portland to take better care of our street trees! Broad Benefits and Value - We know that street trees keep our air ...

  Citation × Citation Citation Abstract Copy Title: Test abstract Author: chomowicz, amy Year: 2017 This is a test abstract and can be deleted at any time. -- Amy The time is ripe for Portland to take better care of our street trees! Broad Benefits and Value - We know that street trees keep our air and water cleaner and cooler, provide habitat, improve property values, and contribute to Portland’s reputation as a green, beautiful city. The human health benefits of trees (physical, mental, emotional) are increasingly well-documented by studies from across the country.[1] What other infrastructure provides this many benefits? Portland’s street trees are valued at about $0.5 billion, and each year provide millions of dollars-worth of health and infrastructure benefits! New City Livability Policies - Portland’s new and updated Climate Change-related plans and Comprehensive Plan herald the importance of Portland’s trees to city livability, and call for improved tree preservation, planting, and stewardship (i.e. maintenance). Community Support - Portlanders care about their street trees. They volunteer thousandsof hours each year to plant street trees with Friends of Trees, and committed thousands of hours to complete a recent street tree inventory. The Problem No Street/ROW Tree Maintenance & Stewardship Program – Unfortunately, unlike a number of other cities (e.g., San Francisco, Washington DC, Vancouver BC) Portland has no comprehensive program to care for the 230,000+ trees currently planted along our streets and rights-of-way. As a result, many street trees die sooner, aren’t as healthy as they could be, and are more prone to become public safety hazards and experience costly damage in storms. The lack of a comprehensive street tree maintenance program creates a real barrier to meeting City tree canopy goals. Portland residents and businesses, saddled with the responsibility to care for the street trees adjacent to their property, (including fixing broken sidewalks), are often unwilling to plant new street trees. These cost burdens are highest for those who can least afford it. And, a street tree maintenance program would provide a huge opportunity to create meaningful jobs for young and/or low-income Portlanders (e.g., Verde’s model street tree planting program which employs lower-income people to improve lower-income, tree-deficient neighborhoods). Ineffective Street Tree Preservation and Planting with Street Improvement and New Development Projects - The City experiences extensive, often needless loss of mature street trees when new street improvements and other development projects are designed and constructed. Further, new development projects often create insufficient space to plant new street trees, particularly in areas with dense development and busy streets, or in areas with un-improved or under-improved streets. And these areas need street tree planting and preservation most! Associated disparities and inequities – Both issues exacerbate the fact that some parts of the city have lots of trees, while others have very few trees. This in turn adds to the social, environmental, and economic inequities in our city. What’s next? Urban Forestry Commission Proposal - Portland’s Urban Forestry Commission (UFC) has asked the City Council to form an inter-bureau task force to work, over the next year or so, with community partners and make recommendations for 1) a comprehensive Street/ROW Tree Maintenance and Stewardship program, and 2) measures to improve street tree preservation and planting in conjunction new development and street improvements. Next Step – City Council Work Session - On May 10th, the City Council considered the UFC proposal, along with strong supporting testimony from community stakeholders. The City Council heard support for the expected benefits of the proposal, including improved public and urban forest health, livability and equity, reduced impacts of climate change, and more green jobs. The City Council unanimously 1) expressed interest in the issues, 2) accepted the UFC proposal, and 3) committed to work with key bureaus to schedule a follow up work session later this year. The work session goal is for the City Council to approve a work plan to move forward with the inter-bureau and community stakeholder collaboration outlined in the UFC proposal. The City Council Work Session is currently scheduled for Tuesday, November 14, 2017. [1] For a local study linking low urban tree canopy to poor birth outcomes in Portland see: https://www.treesearch.fs.fed.us/pubs/39615 Title: Test abstract Author: chomowicz, amy Year: 2017 This is a test abstract and can be deleted at any time. -- Amy The time is ripe for Portland to take better care of our street trees! Broad Benefits and Value - We know that street trees keep our air and water cleaner and cooler, provide habitat, improve property values, and contribute to Portland’s reputation as a green, beautiful city. The human health benefits of trees (physical, mental, emotional) are increasingly well-documented by studies from across the country.[1] What other infrastructure provides this many benefits? Portland’s street trees are valued at about $0.5 billion, and each year provide millions of dollars-worth of health and infrastructure benefits! New City Livability Policies - Portland’s new and updated Climate Change-related plans and Comprehensive Plan herald the importance of Portland’s trees to city livability, and call for improved tree preservation, planting, and stewardship (i.e. maintenance). Community Support - Portlanders care about their street trees. They volunteer thousandsof hours each year to plant street trees with Friends of Trees, and committed thousands of hours to complete a recent street tree inventory. The Problem No Street/ROW Tree Maintenance & Stewardship Program – Unfortunately, unlike a number of other cities (e.g., San Francisco, Washington DC, Vancouver BC) Portland has no comprehensive program to care for the 230,000+ trees currently planted along our streets and rights-of-way. As a result, many street trees die sooner, aren’t as healthy as they could be, and are more prone to become public safety hazards and experience costly damage in storms. The lack of a comprehensive street tree maintenance program creates a real barrier to meeting City tree canopy goals. Portland residents and businesses, saddled with the responsibility to care for the street trees adjacent to their property, (including fixing broken sidewalks), are often unwilling to plant new street trees. These cost burdens are highest for those who can least afford it. And, a street tree maintenance program would provide a huge opportunity to create meaningful jobs for young and/or low-income Portlanders (e.g., Verde’s model street tree planting program which employs lower-income people to improve lower-income, tree-deficient neighborhoods). Ineffective Street Tree Preservation and Planting with Street Improvement and New Development Projects - The City experiences extensive, often needless loss of mature street trees when new street improvements and other development projects are designed and constructed. Further, new development projects often create insufficient space to plant new street trees, particularly in areas with dense development and busy streets, or in areas with un-improved or under-improved streets. And these areas need street tree planting and preservation most! Associated disparities and inequities – Both issues exacerbate the fact that some parts of the city have lots of trees, while others have very few trees. This in turn adds to the social, environmental, and economic inequities in our city. What’s next? Urban Forestry Commission Proposal - Portland’s Urban Forestry Commission (UFC) has asked the City Council to form an inter-bureau task force to work, over the next year or so, with community partners and make recommendations for 1) a comprehensive Street/ROW Tree Maintenance and Stewardship program, and 2) measures to improve street tree preservation and planting in conjunction new development and street improvements. Next Step – City Council Work Session - On May 10th, the City Council considered the UFC proposal, along with strong supporting testimony from community stakeholders. The City Council heard support for the expected benefits of the proposal, including improved public and urban forest health, livability and equity, reduced impacts of climate change, and more green jobs. The City Council unanimously 1) expressed interest in the issues, 2) accepted the UFC proposal, and 3) committed to work with key bureaus to schedule a follow up work session later this year. The work session goal is for the City Council to approve a work plan to move forward with the inter-bureau and community stakeholder collaboration outlined in the UFC proposal. The City Council Work Session is currently scheduled for Tuesday, November 14, 2017. [1] For a local study linking low urban tree canopy to poor birth outcomes in Portland see: https://www.treesearch.fs.fed.us/pubs/39615 Close

• 77. [Article] Historical and Existing Vascular and Bryophyte Flora, Former Blue Heron Paper Mill, Willamette Falls, Oregon City, Oregon

  Willamette Falls has long been a focus of botanical interest, but industrial development at the site has limited public access for over a century. The closure of the Blue Heron paper mill on the south ...

  Citation × Citation Citation Abstract Copy Title: Historical and Existing Vascular and Bryophyte Flora, Former Blue Heron Paper Mill, Willamette Falls, Oregon City, Oregon Author: Christy, John A., Gaddis, Philip Year: 2015 Willamette Falls has long been a focus of botanical interest, but industrial development at the site has limited public access for over a century. The closure of the Blue Heron paper mill on the south bank of the river, and proposed redevelopment of the site, has given planners an opportunity to revisit this part of the falls and identify its current flora. As part of the preconstruction planning process for public access to the falls, Metro contracted John Christy to document the historical and existing vascular flora on the site, and Philip Gaddis joined us to document the bryophyte flora. For millennia, the falls has been a magnet for fishing, settlement, and more recent industrial development. Photographs by Carleton Watkins show that the south bank of the river at Willamette Falls had been modified for industrial uses as early as 1867. Infrastructure included dams and spillways to create a boat basin, and millraces to power a sawmill, gristmill, and woolen mill. Later, paper mills and electrical generating stations were built on both sides of the falls. These activities concentrated at the falls have impacted all native habitat except vertical cliff faces on basalt outcrops along the river. Significant portions of the shoreline at the Blue Heron site have been modified by fill. Remaining habitat in natural or semi-natural condition includes areas hydrated by tidal action of the Willamette River, areas of seasonal or perennial seepage below spillways and the old grinders, and basalt outcrops with varying exposures. The basalt outcrops are a relic of the Bretz or Missoula Floods (Allen et al. 1986), and exposures along this part of the Willamette River provide outlier habitat for both mesic and xeric species more common in the Columbia River Gorge (Detling 1958). Willamette Falls has a similar history to that of Niagara Falls in terms of industrial development, presence of a rock substrate supporting disjunct populations of rare plants, and botanical exploration that occurred primarily between 1885 and 1915 (Eckel 2013). Title: Historical and Existing Vascular and Bryophyte Flora, Former Blue Heron Paper Mill, Willamette Falls, Oregon City, Oregon Author: Christy, John A., Gaddis, Philip Year: 2015 Willamette Falls has long been a focus of botanical interest, but industrial development at the site has limited public access for over a century. The closure of the Blue Heron paper mill on the south bank of the river, and proposed redevelopment of the site, has given planners an opportunity to revisit this part of the falls and identify its current flora. As part of the preconstruction planning process for public access to the falls, Metro contracted John Christy to document the historical and existing vascular flora on the site, and Philip Gaddis joined us to document the bryophyte flora. For millennia, the falls has been a magnet for fishing, settlement, and more recent industrial development. Photographs by Carleton Watkins show that the south bank of the river at Willamette Falls had been modified for industrial uses as early as 1867. Infrastructure included dams and spillways to create a boat basin, and millraces to power a sawmill, gristmill, and woolen mill. Later, paper mills and electrical generating stations were built on both sides of the falls. These activities concentrated at the falls have impacted all native habitat except vertical cliff faces on basalt outcrops along the river. Significant portions of the shoreline at the Blue Heron site have been modified by fill. Remaining habitat in natural or semi-natural condition includes areas hydrated by tidal action of the Willamette River, areas of seasonal or perennial seepage below spillways and the old grinders, and basalt outcrops with varying exposures. The basalt outcrops are a relic of the Bretz or Missoula Floods (Allen et al. 1986), and exposures along this part of the Willamette River provide outlier habitat for both mesic and xeric species more common in the Columbia River Gorge (Detling 1958). Willamette Falls has a similar history to that of Niagara Falls in terms of industrial development, presence of a rock substrate supporting disjunct populations of rare plants, and botanical exploration that occurred primarily between 1885 and 1915 (Eckel 2013). Close

• 78. [Article] Oregon Invasive Species Council Review

  The Oregon Invasive Species Council (OISC – “Council” is also used in this report) was established by the Oregon Legislature in 2001 [ORS 570.750, formerly 561.687]. In partnership with a broad group of ...

  Citation × Citation Citation Abstract Copy Title: Oregon Invasive Species Council Review Author: Draheim, Robyn, Fiegener, Rob, Gaines, Lisa Year: 2015 The Oregon Invasive Species Council (OISC – “Council” is also used in this report) was established by the Oregon Legislature in 2001 [ORS 570.750, formerly 561.687]. In partnership with a broad group of state, federal and local agencies, non-profit organizations, industry representatives and individuals, the Council created and maintains the means for citizens to report sightings of invasive species and a process by which this information is forwarded to appropriate agencies; works to increase citizen engagement and awareness of invasive issues; conducts educational meetings and conferences; and, administers a trust account for funding eradication and educational projects. In 2014, the Institute for Natural Resources (INR) was asked to assist the OISC Coordinator in conducting a review of the OISC. The purpose of the review was to provide a critical examination of the OISC mission as originally established by the state legislature, activities, funding and governance structure, and to provide recommendations for improvement of OISC efficacy. When the OISC Coordinator position fell vacant that role in the review was taken up by staff at the Center for Lakes and Reservoirs (CLR) at Portland State University. INR and the CLR took on different roles within the review. The review consisted of: (1) semi structured interviews/conversations with the directors of the state natural resource agencies directors participating in the OISC (INR); (2) semi-structured interviews/conversations with stakeholders and other members of the OISC (CLR); (3) the collection and review of relevant OISC documents (INR, CLR); and (4) conversations with other invasive species councils around the West (CLR]). Purpose and Organization of the Report: The purpose of this report is to describe and highlight salient features and results of the review of the OISC. Section 1 provides a history of the OISC. Sections 2 and 3 highlight the aggregated results of the interviews conducted with state natural resource agency directors (Section 2) and stakeholders (Section 3). Examples of how other invasive species councils in the western US operate are presented in Section 4. And Section 5 highlights recommendations. The recommendations presented in Section 5 are meant to stimulate discussion, and are not considered by the project team to be the definitive options available the OISC. Title: Oregon Invasive Species Council Review Author: Draheim, Robyn, Fiegener, Rob, Gaines, Lisa Year: 2015 The Oregon Invasive Species Council (OISC – “Council” is also used in this report) was established by the Oregon Legislature in 2001 [ORS 570.750, formerly 561.687]. In partnership with a broad group of state, federal and local agencies, non-profit organizations, industry representatives and individuals, the Council created and maintains the means for citizens to report sightings of invasive species and a process by which this information is forwarded to appropriate agencies; works to increase citizen engagement and awareness of invasive issues; conducts educational meetings and conferences; and, administers a trust account for funding eradication and educational projects. In 2014, the Institute for Natural Resources (INR) was asked to assist the OISC Coordinator in conducting a review of the OISC. The purpose of the review was to provide a critical examination of the OISC mission as originally established by the state legislature, activities, funding and governance structure, and to provide recommendations for improvement of OISC efficacy. When the OISC Coordinator position fell vacant that role in the review was taken up by staff at the Center for Lakes and Reservoirs (CLR) at Portland State University. INR and the CLR took on different roles within the review. The review consisted of: (1) semi structured interviews/conversations with the directors of the state natural resource agencies directors participating in the OISC (INR); (2) semi-structured interviews/conversations with stakeholders and other members of the OISC (CLR); (3) the collection and review of relevant OISC documents (INR, CLR); and (4) conversations with other invasive species councils around the West (CLR]). Purpose and Organization of the Report: The purpose of this report is to describe and highlight salient features and results of the review of the OISC. Section 1 provides a history of the OISC. Sections 2 and 3 highlight the aggregated results of the interviews conducted with state natural resource agency directors (Section 2) and stakeholders (Section 3). Examples of how other invasive species councils in the western US operate are presented in Section 4. And Section 5 highlights recommendations. The recommendations presented in Section 5 are meant to stimulate discussion, and are not considered by the project team to be the definitive options available the OISC. Close

• 79. [Article] Wet Meadow Plant Associations, Double O Unit, Malheur National Wildlife Refuge, Harney County, Oregon

  This report summarizes vegetation data collected in July 2015 in wet meadow and marshy habitats on the Double O Unit of Malheur National Wildlife Refuge (MNWR). Because vegetation sampled at the Double ...

  Citation × Citation Citation Abstract Copy Title: Wet Meadow Plant Associations, Double O Unit, Malheur National Wildlife Refuge, Harney County, Oregon Author: Christy, John A. Year: 2016 This report summarizes vegetation data collected in July 2015 in wet meadow and marshy habitats on the Double O Unit of Malheur National Wildlife Refuge (MNWR). Because vegetation sampled at the Double O was wetter and more alkaline than wet meadows sampled at the south end of the refuge in 2012 and 2013 (Christy 2014), data from the Double O Unit were analyzed and summarized separately. A total of 83 plots were sampled in 2015, and analysis of the data identified 14 plant associations: Alopecurus aequalis - Juncus balticus, Alopecurus pratensis - Potentilla anserina, Carex praegracilis - Juncus balticus, Cicuta douglasii - Carex nebrascensis, Distichlis spicata - Amphiscirpus nevadensis, Distichlis spicata - Nitrophila occidentalis, Eleocharis palustris - Juncus balticus, Eleocharis rostellata, Juncus balticus - Glaux maritima, Hippuris vulgaris - Triglochin maritima, Leymus triticoides - Juncus balticus, Schoenoplectus americanus, Spartina gracilis, and Triglochin maritima. Plant associations spanned a wetland gradient from seasonally moist to seasonally or perennially flooded, but surface water had left most stands at time of sampling. Mean Wetland Indicator Status scores and species composition help to place the plant associations within gradients in soil moisture and alkalinity. Seven of the 14 plant associations are listed in the International Vegetation Classification, and the remaining types are provisional Title: Wet Meadow Plant Associations, Double O Unit, Malheur National Wildlife Refuge, Harney County, Oregon Author: Christy, John A. Year: 2016 This report summarizes vegetation data collected in July 2015 in wet meadow and marshy habitats on the Double O Unit of Malheur National Wildlife Refuge (MNWR). Because vegetation sampled at the Double O was wetter and more alkaline than wet meadows sampled at the south end of the refuge in 2012 and 2013 (Christy 2014), data from the Double O Unit were analyzed and summarized separately. A total of 83 plots were sampled in 2015, and analysis of the data identified 14 plant associations: Alopecurus aequalis - Juncus balticus, Alopecurus pratensis - Potentilla anserina, Carex praegracilis - Juncus balticus, Cicuta douglasii - Carex nebrascensis, Distichlis spicata - Amphiscirpus nevadensis, Distichlis spicata - Nitrophila occidentalis, Eleocharis palustris - Juncus balticus, Eleocharis rostellata, Juncus balticus - Glaux maritima, Hippuris vulgaris - Triglochin maritima, Leymus triticoides - Juncus balticus, Schoenoplectus americanus, Spartina gracilis, and Triglochin maritima. Plant associations spanned a wetland gradient from seasonally moist to seasonally or perennially flooded, but surface water had left most stands at time of sampling. Mean Wetland Indicator Status scores and species composition help to place the plant associations within gradients in soil moisture and alkalinity. Seven of the 14 plant associations are listed in the International Vegetation Classification, and the remaining types are provisional Close

• 80. [Article] Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington

  Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern ...

  Citation × Citation Citation Abstract Copy Title: Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington Author: Carpenter, Forrest Michael Year: 2016 Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern Washington where this study was conducted. Many native salmonid populations have declined in abundance since the early 1900s due to a variety of climate- and human-driven forces. Westslope Cutthroat Trout are especially sensitive to habitat loss or degradation and to climate change. Together, climate change, habitat degradation, and non-native salmonid invasions are contributing to increasingly fragmented WCT populations. Ongoing and predicted future warming trends are expected to further fragment these populations and isolate them in headwater stream reaches, with populations in the spatial margins of their distributions facing greater risk. Native salmonid populations are often separated or isolated by natural or artificial upstream migration barriers (i.e., waterfalls, culverts, etc.). Prior to continuing conservation and management actions targeting WCT, it is imperative to understand habitat requirements of this keystone species in fragmented areas. Field survey data were collected in the summer of 2015 on channel geomorphic characteristics and WCT presence/absence in 26 streams located in the Colville National Forest. A clear spatial separation was observed between Eastern Brook Trout (Salvenius fontinalis, EBT) and WCT above four culvert road crossings and the habitat in both of these areas was compared statistically to identify explicit differences. This dataset was also analyzed using logistic regression modeling to determine the best habitat predictors of the presence of isolated WCT populations existing upstream of these crossing. In general, stream habitat in the Middle and South Forks of Mill Creek had low large substrate, high fine sediments, and exhibited pool-riffle channel morphology. Pool habitat supporting isolated WCT was significantly smaller, in terms of volume and surface area, than pool habitat supporting sympatric populations of WCT and EBT, largely due to the headwater nature of channel units supporting isolated WCT populations. Additionally, due to the extreme drought conditions during 2015, stream flow was substantially diminished in the study area causing these reaches to be highly fragmented and largely disconnected from the rest of the stream channel. Fine sediments were generally higher in headwater reaches supporting isolated WCT, including in pools and riffles, which was unexpected, mainly because they exist above sediment delivery points in the longitudinal extent of the system. Logistic regression analysis indicated that the presence of isolated WCT populations was primarily positively associated with an increase in large wood and boulders, and negatively associated with increasing gravel, bedrock, habitat unit length, depth, and width (Significant x2, R2=0.174, misclassification rate = 14.9%, α=0.05). The final model correctly predicted 37.5% of isolated WCT presence observations and 96.5% of the WCT/EBT presence observations significantly better than by chance alone (k=0.81). This model, in fact, may be useful in identifying limited habitat due to the fragmented nature of the channel units supporting IWCT. Large wood and boulders were positively correlated to WCT presence, likely because both are important in the formation of pools and cascades. Channel unit length, width, depth, active channel width as well as gravel and bedrock substrates, were all negatively associated with WCT presence. This suggests that isolated WCT are primarily associated with small headwater cascades with complex shelter, which may provide greater thermal and predation refuge compared to shallow glide or large pool habitats. Future model analysis should include additional habitat variables such as water temperature, stream gradient, and species interactions to strengthen the prediction of Westslope Cutthroat Trout presence. Overall, I concluded that differences in stream habitat above and below blocking culverts are not driving Westslope Cutthroat Trout distributions in the study area due to confounding factors such as the presence of problematic barriers and small sample size. I also conclude that future conservation and management decisions specific to WCT should prioritize complex cascade habitat in headwater stream reaches because of the type and quantity of habitat they may provide, especially during severe drought or low flow conditions. Title: Understanding the Importance of Intermittently Fragmented Stream Habitat for Isolated Westslope Cutthroat Trout (<i>Oncorhynchus clarki lewisi</i>) in the Colville National Forest, Washington Author: Carpenter, Forrest Michael Year: 2016 Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern Washington where this study was conducted. Many native salmonid populations have declined in abundance since the early 1900s due to a variety of climate- and human-driven forces. Westslope Cutthroat Trout are especially sensitive to habitat loss or degradation and to climate change. Together, climate change, habitat degradation, and non-native salmonid invasions are contributing to increasingly fragmented WCT populations. Ongoing and predicted future warming trends are expected to further fragment these populations and isolate them in headwater stream reaches, with populations in the spatial margins of their distributions facing greater risk. Native salmonid populations are often separated or isolated by natural or artificial upstream migration barriers (i.e., waterfalls, culverts, etc.). Prior to continuing conservation and management actions targeting WCT, it is imperative to understand habitat requirements of this keystone species in fragmented areas. Field survey data were collected in the summer of 2015 on channel geomorphic characteristics and WCT presence/absence in 26 streams located in the Colville National Forest. A clear spatial separation was observed between Eastern Brook Trout (Salvenius fontinalis, EBT) and WCT above four culvert road crossings and the habitat in both of these areas was compared statistically to identify explicit differences. This dataset was also analyzed using logistic regression modeling to determine the best habitat predictors of the presence of isolated WCT populations existing upstream of these crossing. In general, stream habitat in the Middle and South Forks of Mill Creek had low large substrate, high fine sediments, and exhibited pool-riffle channel morphology. Pool habitat supporting isolated WCT was significantly smaller, in terms of volume and surface area, than pool habitat supporting sympatric populations of WCT and EBT, largely due to the headwater nature of channel units supporting isolated WCT populations. Additionally, due to the extreme drought conditions during 2015, stream flow was substantially diminished in the study area causing these reaches to be highly fragmented and largely disconnected from the rest of the stream channel. Fine sediments were generally higher in headwater reaches supporting isolated WCT, including in pools and riffles, which was unexpected, mainly because they exist above sediment delivery points in the longitudinal extent of the system. Logistic regression analysis indicated that the presence of isolated WCT populations was primarily positively associated with an increase in large wood and boulders, and negatively associated with increasing gravel, bedrock, habitat unit length, depth, and width (Significant x2, R2=0.174, misclassification rate = 14.9%, α=0.05). The final model correctly predicted 37.5% of isolated WCT presence observations and 96.5% of the WCT/EBT presence observations significantly better than by chance alone (k=0.81). This model, in fact, may be useful in identifying limited habitat due to the fragmented nature of the channel units supporting IWCT. Large wood and boulders were positively correlated to WCT presence, likely because both are important in the formation of pools and cascades. Channel unit length, width, depth, active channel width as well as gravel and bedrock substrates, were all negatively associated with WCT presence. This suggests that isolated WCT are primarily associated with small headwater cascades with complex shelter, which may provide greater thermal and predation refuge compared to shallow glide or large pool habitats. Future model analysis should include additional habitat variables such as water temperature, stream gradient, and species interactions to strengthen the prediction of Westslope Cutthroat Trout presence. Overall, I concluded that differences in stream habitat above and below blocking culverts are not driving Westslope Cutthroat Trout distributions in the study area due to confounding factors such as the presence of problematic barriers and small sample size. I also conclude that future conservation and management decisions specific to WCT should prioritize complex cascade habitat in headwater stream reaches because of the type and quantity of habitat they may provide, especially during severe drought or low flow conditions. Close

• 81. [Article] Let the Seeds Fall Where They May: Investigating the Effect of Landscape Features on Fine-Scale Seed Dispersal

  Seed dispersal is a crucial ecological and evolutionary process that allows plants to colonize sites and expand their ranges, while also reducing inbreeding depression and facilitating the spread of adaptive ...

  Citation × Citation Citation Abstract Copy Title: Let the Seeds Fall Where They May: Investigating the Effect of Landscape Features on Fine-Scale Seed Dispersal Author: Grasty, Monica R. Year: 2017 Seed dispersal is a crucial ecological and evolutionary process that allows plants to colonize sites and expand their ranges, while also reducing inbreeding depression and facilitating the spread of adaptive genetic variation. However, our fundamental understanding of seed dispersal is limited due to the difficulty of directly observing dispersal events. In recent years, genetic marker methods have furthered our understanding of colonization and range expansion due to seed dispersal. Most investigations focus on regional scales of dispersal, due to low levels of variation in the chloroplast genome (cpDNA), which can serve as an indirect measure of seed dispersal. Here, I employ a whole-genome assay of cpDNA variation in Plagiobothrys nothofulvus to resolve variation due to patterns of seed dispersal within a 400x400 meter section of the Whetstone Savanna Preserve in Central Point, OR, USA. Whetstone is characterized by a mosaic of habitat types, including vernal pools, hummocks of dry prairie, and large Ceanothus cuneatus bushes, as well as a network of vole runways. Plagiobothrys nothofulvus grows in dense patches on hummocks within this prairie. I found evidence of limited seed dispersal in P. nothofulvus, indicated by strong genetic structure over distances of less than 100 meters. There was little evidence that geographic distance predicts genetic distance; environmental features have a stronger influence on dispersal. Habitat preference was the strongest predictor of genetic variation in P. nothofulvus, indicating that it may be a habitat specialist in this prairie. Flower density also accounted for a significant portion of dispersal, which may be a consequence of the annual life history of P. nothofulvus resulting in seasonal turnover and lack of competition with adult plants. Least-cost-path analysis indicated that seeds are secondarily dispersed by small mammals along vole runways. Overall, I found significant evidence that landscape features influence dispersal, even at a very fine spatial scale. Title: Let the Seeds Fall Where They May: Investigating the Effect of Landscape Features on Fine-Scale Seed Dispersal Author: Grasty, Monica R. Year: 2017 Seed dispersal is a crucial ecological and evolutionary process that allows plants to colonize sites and expand their ranges, while also reducing inbreeding depression and facilitating the spread of adaptive genetic variation. However, our fundamental understanding of seed dispersal is limited due to the difficulty of directly observing dispersal events. In recent years, genetic marker methods have furthered our understanding of colonization and range expansion due to seed dispersal. Most investigations focus on regional scales of dispersal, due to low levels of variation in the chloroplast genome (cpDNA), which can serve as an indirect measure of seed dispersal. Here, I employ a whole-genome assay of cpDNA variation in Plagiobothrys nothofulvus to resolve variation due to patterns of seed dispersal within a 400x400 meter section of the Whetstone Savanna Preserve in Central Point, OR, USA. Whetstone is characterized by a mosaic of habitat types, including vernal pools, hummocks of dry prairie, and large Ceanothus cuneatus bushes, as well as a network of vole runways. Plagiobothrys nothofulvus grows in dense patches on hummocks within this prairie. I found evidence of limited seed dispersal in P. nothofulvus, indicated by strong genetic structure over distances of less than 100 meters. There was little evidence that geographic distance predicts genetic distance; environmental features have a stronger influence on dispersal. Habitat preference was the strongest predictor of genetic variation in P. nothofulvus, indicating that it may be a habitat specialist in this prairie. Flower density also accounted for a significant portion of dispersal, which may be a consequence of the annual life history of P. nothofulvus resulting in seasonal turnover and lack of competition with adult plants. Least-cost-path analysis indicated that seeds are secondarily dispersed by small mammals along vole runways. Overall, I found significant evidence that landscape features influence dispersal, even at a very fine spatial scale. Close

• 82. [Article] Historical Vegetation of Three Salmon-Bearing Watersheds in the Interior Columbia River Basin

  Land use practices can be a contributing factor to environmental degradation and have been the focus of many ecological studies. One aspect that is less addressed is land use history and the effects that ...

  Citation × Citation Citation Abstract Copy Title: Historical Vegetation of Three Salmon-Bearing Watersheds in the Interior Columbia River Basin Author: Smith, Tyanna Year: 2014 Land use practices can be a contributing factor to environmental degradation and have been the focus of many ecological studies. One aspect that is less addressed is land use history and the effects that past practices, such as logging and grazing, can have on the current landscape. This paper describes research and the synthesis of material on the environmental history and watershed characteristics for three watersheds located within spawning and rearing areas for Chinook salmon in the Grande Ronde River Basin in Northeast Oregon: upper Grande Ronde River, Catherine Creek, and Minam River. The Grande Ronde Basin is critical spawning and rearing habitat for salmonids listed under the Endangered Species Act. The primary historical data sources for reconstructing 19th century stream and riparian conditions are the General Land Office township survey notes from 1863 - 1901. Data about the habitat conditions of the landscape were extracted from notes of each township survey source regarding vegetation, stream crossings, and other features found on the landscape in tabular and spatial forms. Data were organized to describe common stream and riparian conditions for the historical time period using a geographic information system. Watershed basin, Chinook salmon life history, ecoregion and surveyor were analyzed using multivariate techniques to determine which parameters were strongly connected to historical vegetation. Ecoregion had the strongest correlation with plant communities. For future research, these historical data could be compared to current habitat survey data, such as the Oregon Department of Fish & Wildlife’s Aquatic Habitat Inventories, to evaluate the degree of change over time of stream and riparian conditions. Title: Historical Vegetation of Three Salmon-Bearing Watersheds in the Interior Columbia River Basin Author: Smith, Tyanna Year: 2014 Land use practices can be a contributing factor to environmental degradation and have been the focus of many ecological studies. One aspect that is less addressed is land use history and the effects that past practices, such as logging and grazing, can have on the current landscape. This paper describes research and the synthesis of material on the environmental history and watershed characteristics for three watersheds located within spawning and rearing areas for Chinook salmon in the Grande Ronde River Basin in Northeast Oregon: upper Grande Ronde River, Catherine Creek, and Minam River. The Grande Ronde Basin is critical spawning and rearing habitat for salmonids listed under the Endangered Species Act. The primary historical data sources for reconstructing 19th century stream and riparian conditions are the General Land Office township survey notes from 1863 - 1901. Data about the habitat conditions of the landscape were extracted from notes of each township survey source regarding vegetation, stream crossings, and other features found on the landscape in tabular and spatial forms. Data were organized to describe common stream and riparian conditions for the historical time period using a geographic information system. Watershed basin, Chinook salmon life history, ecoregion and surveyor were analyzed using multivariate techniques to determine which parameters were strongly connected to historical vegetation. Ecoregion had the strongest correlation with plant communities. For future research, these historical data could be compared to current habitat survey data, such as the Oregon Department of Fish & Wildlife’s Aquatic Habitat Inventories, to evaluate the degree of change over time of stream and riparian conditions. Close

• 83. [Article] Desert Environments

  This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research ...

  Citation × Citation Citation Abstract Copy Title: Desert Environments Author: Hillyard, Stanley D., Podrabsky, Jason E., van Breukelen, Frank Year: 2015 This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research on acidic, Antarctic, cave, desert, hypersaline, hypoxic, temporary, and fast-flowing habitats, as well as naturally and anthropogenically toxic waters, while pointing out generalities that are evident across different study systems. Knowledge of the different adaptations that allow fish to cope with stressful environmental conditions furthers our understanding of basic physiological, ecological, and evolutionary principles. In several cases, evidence is provided for how the adaptation to extreme environments promotes the emergence of new species. Furthermore, a link is made to conservation biology, and how human activities have exacerbated existing extreme environments and created new ones. The book concludes with a discussion of major open questions in our understanding of the ecology and evolution of life in extreme environments. Title: Desert Environments Author: Hillyard, Stanley D., Podrabsky, Jason E., van Breukelen, Frank Year: 2015 This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research on acidic, Antarctic, cave, desert, hypersaline, hypoxic, temporary, and fast-flowing habitats, as well as naturally and anthropogenically toxic waters, while pointing out generalities that are evident across different study systems. Knowledge of the different adaptations that allow fish to cope with stressful environmental conditions furthers our understanding of basic physiological, ecological, and evolutionary principles. In several cases, evidence is provided for how the adaptation to extreme environments promotes the emergence of new species. Furthermore, a link is made to conservation biology, and how human activities have exacerbated existing extreme environments and created new ones. The book concludes with a discussion of major open questions in our understanding of the ecology and evolution of life in extreme environments. Close

• 84. [Article] Temporary Environments

  This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research ...

  Citation × Citation Citation Abstract Copy Title: Temporary Environments Author: Polacik, Matej, Podrabsky, Jason E. Year: 2015 This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research on acidic, Antarctic, cave, desert, hypersaline, hypoxic, temporary, and fast-flowing habitats, as well as naturally and anthropogenically toxic waters, while pointing out generalities that are evident across different study systems. Knowledge of the different adaptations that allow fish to cope with stressful environmental conditions furthers our understanding of basic physiological, ecological, and evolutionary principles. In several cases, evidence is provided for how the adaptation to extreme environments promotes the emergence of new species. Furthermore, a link is made to conservation biology, and how human activities have exacerbated existing extreme environments and created new ones. The book concludes with a discussion of major open questions in our understanding of the ecology and evolution of life in extreme environments. Title: Temporary Environments Author: Polacik, Matej, Podrabsky, Jason E. Year: 2015 This is a book chapter within Extremophile Fishes. This book summarizes the key adaptations enabling extremophile fishes to survive under harsh environmental conditions. It reviews the most recent research on acidic, Antarctic, cave, desert, hypersaline, hypoxic, temporary, and fast-flowing habitats, as well as naturally and anthropogenically toxic waters, while pointing out generalities that are evident across different study systems. Knowledge of the different adaptations that allow fish to cope with stressful environmental conditions furthers our understanding of basic physiological, ecological, and evolutionary principles. In several cases, evidence is provided for how the adaptation to extreme environments promotes the emergence of new species. Furthermore, a link is made to conservation biology, and how human activities have exacerbated existing extreme environments and created new ones. The book concludes with a discussion of major open questions in our understanding of the ecology and evolution of life in extreme environments. Close

• 85. [Article] Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach

  Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of ...

  Citation × Citation Citation Abstract Copy Title: Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach Author: Prichard, Emma C, Granek, Elise F. Year: 2016 Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of literature reporting the effects of PPCPs on freshwater organisms, but studies on the effects of PPCPs to marine and estuarine organisms are limited. Among effect studies, the vast majority examines subcellular or cellular effects, with far fewer studies examining organismal- and community-level effects. We reviewed the current published literature on marine and estuarine algae, invertebrates, fish, and mammals exposed to PPCPs, in order to expand upon current reviews. This paper builds on previous reviews of PPCP contamination in marine environments, filling prior literature gaps and adding consideration of ecosystem function and level of knowledge across marine habitat types. Finally, we reviewed and compiled data gaps suggested by current researchers and reviewers and propose a multi-level model to expand the focus of current PPCP research beyond laboratory studies. This model includes examination of direct ecological effects including food web and disease dynamics, biodiversity, community composition, and other ecosystem-level indicators of contaminant-driven change. Title: Effects of Pharmaceuticals and Personal Care Products on Marine Organisms: From Single-Species Studies to an Ecosystem-Based Approach Author: Prichard, Emma C, Granek, Elise F. Year: 2016 Pharmaceuticals and personal care products (PPCPs) are contaminants of emerging concern that are increasing in use and have demonstrated negative effects on aquatic organisms. There is a growing body of literature reporting the effects of PPCPs on freshwater organisms, but studies on the effects of PPCPs to marine and estuarine organisms are limited. Among effect studies, the vast majority examines subcellular or cellular effects, with far fewer studies examining organismal- and community-level effects. We reviewed the current published literature on marine and estuarine algae, invertebrates, fish, and mammals exposed to PPCPs, in order to expand upon current reviews. This paper builds on previous reviews of PPCP contamination in marine environments, filling prior literature gaps and adding consideration of ecosystem function and level of knowledge across marine habitat types. Finally, we reviewed and compiled data gaps suggested by current researchers and reviewers and propose a multi-level model to expand the focus of current PPCP research beyond laboratory studies. This model includes examination of direct ecological effects including food web and disease dynamics, biodiversity, community composition, and other ecosystem-level indicators of contaminant-driven change. Close

• 86. [Article] Small Unmanned Aerial Vehicles (Micro-UAVs, Drones) in Plant Ecology

  Premise of the study: Low-elevation surveys with small aerial drones (micro–unmanned aerial vehicles [UAVs]) may be used for a wide variety of applications in plant ecology, including mapping vegetation ...

  Citation × Citation Citation Abstract Copy Title: Small Unmanned Aerial Vehicles (Micro-UAVs, Drones) in Plant Ecology Author: Cruzan, Mitchell B., Weinstein, Ben G., Grasty, Monica R., Kohrn, Brendan F., Hendrickson, Elizabeth C., Arredondo, Tina M., Thompson, Pamela G. Year: 2016 Premise of the study: Low-elevation surveys with small aerial drones (micro–unmanned aerial vehicles [UAVs]) may be used for a wide variety of applications in plant ecology, including mapping vegetation over small- to medium-sized regions. We provide an overview of methods and procedures for conducting surveys and illustrate some of these applications. Methods: Aerial images were obtained by flying a small drone along transects over the area of interest. Images were used to create a composite image (orthomosaic) and a digital surface model (DSM). Vegetation classification was conducted manually and using an automated routine. Coverage of an individual species was estimated from aerial images. Results: We created a vegetation map for the entire region from the orthomosaic and DSM, and mapped the density of one species. Comparison of our manual and automated habitat classification confirmed that our mapping methods were accurate. A species with high contrast to the background matrix allowed adequate estimate of its coverage. Discussion: The example surveys demonstrate that small aerial drones are capable of gathering large amounts of information on the distribution of vegetation and individual species with minimal impact to sensitive habitats. Low-elevation aerial surveys have potential for a wide range of applications in plant ecology. Title: Small Unmanned Aerial Vehicles (Micro-UAVs, Drones) in Plant Ecology Author: Cruzan, Mitchell B., Weinstein, Ben G., Grasty, Monica R., Kohrn, Brendan F., Hendrickson, Elizabeth C., Arredondo, Tina M., Thompson, Pamela G. Year: 2016 Premise of the study: Low-elevation surveys with small aerial drones (micro–unmanned aerial vehicles [UAVs]) may be used for a wide variety of applications in plant ecology, including mapping vegetation over small- to medium-sized regions. We provide an overview of methods and procedures for conducting surveys and illustrate some of these applications. Methods: Aerial images were obtained by flying a small drone along transects over the area of interest. Images were used to create a composite image (orthomosaic) and a digital surface model (DSM). Vegetation classification was conducted manually and using an automated routine. Coverage of an individual species was estimated from aerial images. Results: We created a vegetation map for the entire region from the orthomosaic and DSM, and mapped the density of one species. Comparison of our manual and automated habitat classification confirmed that our mapping methods were accurate. A species with high contrast to the background matrix allowed adequate estimate of its coverage. Discussion: The example surveys demonstrate that small aerial drones are capable of gathering large amounts of information on the distribution of vegetation and individual species with minimal impact to sensitive habitats. Low-elevation aerial surveys have potential for a wide range of applications in plant ecology. Close

• 87. [Article] Variation in Tussock Architecture of the Invasive Cordgrass Spartina Densiflora along the Pacific Coast of North America

  Some introduced species spread rapidly beyond their native range and into novel habitats mediated by a high degree of phenotypic plasticity and/or rapid evolutionary responses. In this context, clonality ...

  Citation × Citation Citation Abstract Copy Title: Variation in Tussock Architecture of the Invasive Cordgrass Spartina Densiflora along the Pacific Coast of North America Author: Castillo, Jesus M., Grewall, Brenda J., Pickart, Andrea, Figueroa, Enrique, Sytsma, Mark D. Year: 2016 Some introduced species spread rapidly beyond their native range and into novel habitats mediated by a high degree of phenotypic plasticity and/or rapid evolutionary responses. In this context, clonality has been described as a significant factor contributing to invasiveness. We studied the abiotic environment and the responses of different tussock architecture traits of the invasive cordgrass Spartina densiflora Brongn. (Poaceae). A common garden experiment and field studies of S. densiflora in salt marshes across a wide latitudinal gradient from California (USA) to British Columbia (Canada) provided a model system for an integrated study of the potential mechanisms underlying the response of invasive S. densiflora populations to changes in environmental conditions. Our results showed that S. densiflora is able to adjust to widely variable climate (specifically, air temperature and the duration of the growing season) and sediment conditions (specifically, texture and hypoxia) through phenotypical plastic key functional tussock traits (e.g. shoot density, height, above- and below-ground biomass allocation patterns). Root biomass increased in coarser sediments in contrast to rhizomes, which were more abundant in finer sediments. Above-ground biomass and leaf area index increased mainly with air temperature during summer, and more robust (taller and wider) shoots were associated with more oxygenated sediments. In view of our results, S. densifloraappears to be a halophyte with a high degree of phenotypic plasticity that would enable it to respond successfully to changes in the abiotic conditions of salt marshes driven by global climate change, such as increasing salinity and temperatures. Title: Variation in Tussock Architecture of the Invasive Cordgrass Spartina Densiflora along the Pacific Coast of North America Author: Castillo, Jesus M., Grewall, Brenda J., Pickart, Andrea, Figueroa, Enrique, Sytsma, Mark D. Year: 2016 Some introduced species spread rapidly beyond their native range and into novel habitats mediated by a high degree of phenotypic plasticity and/or rapid evolutionary responses. In this context, clonality has been described as a significant factor contributing to invasiveness. We studied the abiotic environment and the responses of different tussock architecture traits of the invasive cordgrass Spartina densiflora Brongn. (Poaceae). A common garden experiment and field studies of S. densiflora in salt marshes across a wide latitudinal gradient from California (USA) to British Columbia (Canada) provided a model system for an integrated study of the potential mechanisms underlying the response of invasive S. densiflora populations to changes in environmental conditions. Our results showed that S. densiflora is able to adjust to widely variable climate (specifically, air temperature and the duration of the growing season) and sediment conditions (specifically, texture and hypoxia) through phenotypical plastic key functional tussock traits (e.g. shoot density, height, above- and below-ground biomass allocation patterns). Root biomass increased in coarser sediments in contrast to rhizomes, which were more abundant in finer sediments. Above-ground biomass and leaf area index increased mainly with air temperature during summer, and more robust (taller and wider) shoots were associated with more oxygenated sediments. In view of our results, S. densifloraappears to be a halophyte with a high degree of phenotypic plasticity that would enable it to respond successfully to changes in the abiotic conditions of salt marshes driven by global climate change, such as increasing salinity and temperatures. Close

• 88. [Article] Modeling Historic Columbia River Flood Impacts

  The Lower Columbia River Estuary (LCRE) has undergone extensive modifications since the 19th century. Construction of dams, installation of jetties and dikes, dredging of the navigation channel and filling ...

  Citation × Citation Citation Abstract Copy Title: Modeling Historic Columbia River Flood Impacts Author: Helaire, Lumas, Mahedy, Andrew, Talke, Stefan A., Jay, David A Year: 2014 The Lower Columbia River Estuary (LCRE) has undergone extensive modifications since the 19th century. Construction of dams, installation of jetties and dikes, dredging of the navigation channel and filling in of tidal wetlands have all contributed significantly to alterations in tidal dynamics and the flow regime, with consequences for habitat inundation and salinity intrusion. In this talk we discuss the development and implementation of a 19th century flow model for the LCRE, using a digital elevation model based on historic bathymetry. The model has been calibrated with recently rediscovered and digitized tide data from the 19th century. In this research project we look at several river flow scenarios. We are interested in the interaction between river flow and ocean tides, how it has changed in the LCRE since the 19th century and how it affects the river physics. With the model, we focus on the following questions: How has the spatial structure of salinity changed since the 1890's? Has the salinity intrusion length increased or decreased? Is there a change in residual salinity in some of the bays in the estuary? How have changes to the bathymetric structure of the river affected salinity intrusion? For the same flow river flow, how have wetland inundation patterns changed? How have changes to the tidal prism ascertained from a temporal analysis of tidal records, affected the amount of land inundated in a tidal cycle and how long that land remains inundated? Initial results suggest that salinity intrusion patterns have shifted and that wetland inundation patterns have been impacted by the up to 10% increase in the estuary tidal range since the late 19th century. Title: Modeling Historic Columbia River Flood Impacts Author: Helaire, Lumas, Mahedy, Andrew, Talke, Stefan A., Jay, David A Year: 2014 The Lower Columbia River Estuary (LCRE) has undergone extensive modifications since the 19th century. Construction of dams, installation of jetties and dikes, dredging of the navigation channel and filling in of tidal wetlands have all contributed significantly to alterations in tidal dynamics and the flow regime, with consequences for habitat inundation and salinity intrusion. In this talk we discuss the development and implementation of a 19th century flow model for the LCRE, using a digital elevation model based on historic bathymetry. The model has been calibrated with recently rediscovered and digitized tide data from the 19th century. In this research project we look at several river flow scenarios. We are interested in the interaction between river flow and ocean tides, how it has changed in the LCRE since the 19th century and how it affects the river physics. With the model, we focus on the following questions: How has the spatial structure of salinity changed since the 1890's? Has the salinity intrusion length increased or decreased? Is there a change in residual salinity in some of the bays in the estuary? How have changes to the bathymetric structure of the river affected salinity intrusion? For the same flow river flow, how have wetland inundation patterns changed? How have changes to the tidal prism ascertained from a temporal analysis of tidal records, affected the amount of land inundated in a tidal cycle and how long that land remains inundated? Initial results suggest that salinity intrusion patterns have shifted and that wetland inundation patterns have been impacted by the up to 10% increase in the estuary tidal range since the late 19th century. Close

• 89. [Article] Getting Green to Work in the Northwest Industrial District

  Forest Park and its surrounding watershed experience measurable environmental problems such as urban heat island impacts, increased storm water runoff containing pollutants, fragmentations of habitat connectivity ...

  Citation × Citation Citation Abstract Copy Title: Getting Green to Work in the Northwest Industrial District Author: Heisler, Stefan, Ivey, Sara, Kelso, Alexis, Sakuma, Ryu, Dornoff, John, Yee, Dianne Year: 2015 Forest Park and its surrounding watershed experience measurable environmental problems such as urban heat island impacts, increased storm water runoff containing pollutants, fragmentations of habitat connectivity due to their proximities to high-impact land uses, poor air quality, absence of public space, and lack of pedestrian and bicycle infrastructure. Getting Green to Work in the Northwest Industrial District identifies strategies to address environmental issues that affect local human and environmental health in the Northwest Indusrial District, Forest Park and the Willamette River, while benefiting local businesses workers and firms. Getting Green to Work explores voluntary approaches to address local environmental problems with green infrastructure and other place-based remedies. Through engagement with industrial stakeholders and technical advisors we determined where the greatest environmental benefit could be achievable and what opportunities and obstacles exist to implementation. Building on this information, final recommendations outline priorities and strategies for Forest Park Conservancy, City of Portland Bureau of Environmental Services and their advocates to expand green infrastructure on private and public lands in the Northwest Industrial District. This project was conducted under the supervision of Sy Adler, Marisa Zapata Title: Getting Green to Work in the Northwest Industrial District Author: Heisler, Stefan, Ivey, Sara, Kelso, Alexis, Sakuma, Ryu, Dornoff, John, Yee, Dianne Year: 2015 Forest Park and its surrounding watershed experience measurable environmental problems such as urban heat island impacts, increased storm water runoff containing pollutants, fragmentations of habitat connectivity due to their proximities to high-impact land uses, poor air quality, absence of public space, and lack of pedestrian and bicycle infrastructure. Getting Green to Work in the Northwest Industrial District identifies strategies to address environmental issues that affect local human and environmental health in the Northwest Indusrial District, Forest Park and the Willamette River, while benefiting local businesses workers and firms. Getting Green to Work explores voluntary approaches to address local environmental problems with green infrastructure and other place-based remedies. Through engagement with industrial stakeholders and technical advisors we determined where the greatest environmental benefit could be achievable and what opportunities and obstacles exist to implementation. Building on this information, final recommendations outline priorities and strategies for Forest Park Conservancy, City of Portland Bureau of Environmental Services and their advocates to expand green infrastructure on private and public lands in the Northwest Industrial District. This project was conducted under the supervision of Sy Adler, Marisa Zapata Close

• 90. [Article] The Erosion of Coastal Sediment and Regeneration of Rhizophora mangle Following Anthropogenic Disturbance on Turneffe Atoll, Belize

  As communities and managers become aware of the long-term impacts of mangrove loss, estimated at 1-2% per year, interest in sediment erosion and mangrove rehabilitation has increased substantially. In ...

  Citation × Citation Citation Abstract Copy Title: The Erosion of Coastal Sediment and Regeneration of Rhizophora mangle Following Anthropogenic Disturbance on Turneffe Atoll, Belize Author: Hayden, Heather Lyn Year: 2015 As communities and managers become aware of the long-term impacts of mangrove loss, estimated at 1-2% per year, interest in sediment erosion and mangrove rehabilitation has increased substantially. In this thesis project I 1) examine erosion rates within coastal fringing Rhizophora mangle ecosystems following mangrove clearing and compare these rates to accretion rates in intact mangroves; and 2) investigate the abiotic factors influencing mangrove seedling survival and regeneration of naturally colonizing R. mangle, in historic mangrove habitat after anthropogenic clearing. Differences in erosion were compared between patches of open-coast intact and anthropogenically cleared R. mangle to quantify the sediment trapping function provided by mangroves and its loss following clearing over a 24 month period. Growth rates of mangrove seedlings in intact forest were compared to seedlings in cleared areas. Seedling growth indicators were measured on 100 seedlings at five sites (50 in the intact and 50 in the cleared areas). To examine the limiting factors on seedling growth rates, nutrient addition and wave protection treatments were applied to seedlings in three disturbed areas. Sites within intact mangroves had sediment accretion (M= +3.83 mm) while areas cleared of mangroves had sediment erosion (M= -7.30 mm). Seedling growth (height) over the 2 year study period significantly differed between intact mangrove (M = 15.6 cm) and cleared (M = 10.24 cm) areas. Seedling mortality from the cleared areas (31%) differed from the intact areas (13%). Average seedling growth (height) was: greater with both nutrient/wave (M = 18.4 cm) and nutrient (M = 17.65 cm) treatments compared to controls (M = 10.8 cm), which suggests that providing nutrients and/or wave protection result in growth outputs comparable to seedlings found in intact mangroves. This study may prove to be useful in identifying areas that are most vulnerable to erosion following mangrove removal and ideal location of restoration following mangrove removal. Areas cleared of mangroves can lead to intensified erosion in areas where fringing reefs are not continuous. When managers are determining areas to focus resources for restoration, focusing on areas with nutrient rich habitat may result in higher survival rates and growth outputs. Title: The Erosion of Coastal Sediment and Regeneration of Rhizophora mangle Following Anthropogenic Disturbance on Turneffe Atoll, Belize Author: Hayden, Heather Lyn Year: 2015 As communities and managers become aware of the long-term impacts of mangrove loss, estimated at 1-2% per year, interest in sediment erosion and mangrove rehabilitation has increased substantially. In this thesis project I 1) examine erosion rates within coastal fringing Rhizophora mangle ecosystems following mangrove clearing and compare these rates to accretion rates in intact mangroves; and 2) investigate the abiotic factors influencing mangrove seedling survival and regeneration of naturally colonizing R. mangle, in historic mangrove habitat after anthropogenic clearing. Differences in erosion were compared between patches of open-coast intact and anthropogenically cleared R. mangle to quantify the sediment trapping function provided by mangroves and its loss following clearing over a 24 month period. Growth rates of mangrove seedlings in intact forest were compared to seedlings in cleared areas. Seedling growth indicators were measured on 100 seedlings at five sites (50 in the intact and 50 in the cleared areas). To examine the limiting factors on seedling growth rates, nutrient addition and wave protection treatments were applied to seedlings in three disturbed areas. Sites within intact mangroves had sediment accretion (M= +3.83 mm) while areas cleared of mangroves had sediment erosion (M= -7.30 mm). Seedling growth (height) over the 2 year study period significantly differed between intact mangrove (M = 15.6 cm) and cleared (M = 10.24 cm) areas. Seedling mortality from the cleared areas (31%) differed from the intact areas (13%). Average seedling growth (height) was: greater with both nutrient/wave (M = 18.4 cm) and nutrient (M = 17.65 cm) treatments compared to controls (M = 10.8 cm), which suggests that providing nutrients and/or wave protection result in growth outputs comparable to seedlings found in intact mangroves. This study may prove to be useful in identifying areas that are most vulnerable to erosion following mangrove removal and ideal location of restoration following mangrove removal. Areas cleared of mangroves can lead to intensified erosion in areas where fringing reefs are not continuous. When managers are determining areas to focus resources for restoration, focusing on areas with nutrient rich habitat may result in higher survival rates and growth outputs. Close

• 91. [Article] Examination of Human Impacts on the Biodiversity and Ecology of Lichen and Moss Communities

  Globally, more than half of the world's population is living in urban areas and it is well accepted that human activities (e.g. climate warming, pollution, landscape homogenization) pose a multitude of ...

  Citation × Citation Citation Abstract Copy Title: Examination of Human Impacts on the Biodiversity and Ecology of Lichen and Moss Communities Author: Prather, Hannah Marie Year: 2017 Globally, more than half of the world's population is living in urban areas and it is well accepted that human activities (e.g. climate warming, pollution, landscape homogenization) pose a multitude of threats to ecosystems. Largely, human-related impacts on biodiversity will hold consequences for larger ecological processes and research looking into human impacts on sensitive epiphytic lichen and moss communities is an emerging area of research. While seemingly small, lichen and moss communities exist on nearly every terrestrial ecosystem on Earth and contribute to whole-system processes (e.g. hydrology, mineral cycling, food web energetics) worldwide. To further examine human impacts on epiphytic communities, I conducted three studies examining urbanization and climate warming effects on epiphytic lichen and moss biodiversity and ecology. In the first study I revisited a historic urban lichen community study to assess how urban lichen communities have responded to regional air quality changes occurring over the last nearly two decades. I further investigated, for the first time, the biodiversity of urban tree canopy-dwelling lichen communities in a native coniferous tree species, Pseudotsuga menziesii. I found that urban parks and forested areas harbor a species rich community of lichens epiphytes. Further, I found evidence for the distinct homogenization of urban epiphytic lichen communities, suggesting that expanding beyond simplistic measures of biodiversity to consider community composition and functional biodiversity may be necessary when assessing the ecology and potential ecosystem services of epiphyte communites within urbanizing landscapes. Next, I present the first tall tree canopy study across a regional gradient of urbanization near Portland, Oregon, USA. I found that tall tree canopy epiphyte communities change dramatically along gradients of increasing urbanization, most notably by the transitioning of species functional groups from sensitive, oligotrophic species to a dominance of urban-tolerant, eutrophic species. The implications these dramatic shifts in species composition have on essential PNW ecosystem processes, like N-fixation and canopy microclimate regulation, is still not well understood and is difficult to formally evaluate. However, I find strong evidence that native conifer trees in urban areas may provide a diversity of essential ecosystem services, including providing stratified habitat for epiphyte communities and their associated micro arthropod communities and the scavenging of atmospherically deposited nutrients. Future work is needed to understand how losses in canopy N fixation and species with large biomass (both lichens and bryophytes) will affect nutrient and hydrologic cycling in the PNW region, which continue to undergo rapid growth and urbanization. The final chapter investigates the impacts of passive warming by Open Top Chambers (OTCs) in moss-dominated ecosystems located on the Western Antarctic Peninsula, an area of increasing climate warming. I compared species-specific temperature effects, moss canopy morphology, sexual reproductive effort and invertebrate communities between OTC and control moss communities for two moss species, Polytrichastrum alpinum and Sanionia uncinata, that make up over 65% of the terrestrial vegetative cover in the area. I found distinct reproductive shifts in P. alpinum under passive warming compared to controls. Moss communities under warming also had substantially larger total invertebrate communities than those in control moss communities, and invertebrate communities were significantly affected by moss species and moss reproductive effort. Further, substantial species-specific thermal differences among contiguous patches of these dominant moss species were revealed. These results suggest that continued warming will differentially impact the reproductive output of Antarctic moss species and is likely to dramatically alter terrestrial ecosystems dynamics from the bottom up. This combined work provides a diverse contribution to the field of epiphyte ecology and biology by providing new insights on how human impacts will affect epiphyte lichen and moss communities across diverse ecosystems, in light of a rapidly changing planet. Title: Examination of Human Impacts on the Biodiversity and Ecology of Lichen and Moss Communities Author: Prather, Hannah Marie Year: 2017 Globally, more than half of the world's population is living in urban areas and it is well accepted that human activities (e.g. climate warming, pollution, landscape homogenization) pose a multitude of threats to ecosystems. Largely, human-related impacts on biodiversity will hold consequences for larger ecological processes and research looking into human impacts on sensitive epiphytic lichen and moss communities is an emerging area of research. While seemingly small, lichen and moss communities exist on nearly every terrestrial ecosystem on Earth and contribute to whole-system processes (e.g. hydrology, mineral cycling, food web energetics) worldwide. To further examine human impacts on epiphytic communities, I conducted three studies examining urbanization and climate warming effects on epiphytic lichen and moss biodiversity and ecology. In the first study I revisited a historic urban lichen community study to assess how urban lichen communities have responded to regional air quality changes occurring over the last nearly two decades. I further investigated, for the first time, the biodiversity of urban tree canopy-dwelling lichen communities in a native coniferous tree species, Pseudotsuga menziesii. I found that urban parks and forested areas harbor a species rich community of lichens epiphytes. Further, I found evidence for the distinct homogenization of urban epiphytic lichen communities, suggesting that expanding beyond simplistic measures of biodiversity to consider community composition and functional biodiversity may be necessary when assessing the ecology and potential ecosystem services of epiphyte communites within urbanizing landscapes. Next, I present the first tall tree canopy study across a regional gradient of urbanization near Portland, Oregon, USA. I found that tall tree canopy epiphyte communities change dramatically along gradients of increasing urbanization, most notably by the transitioning of species functional groups from sensitive, oligotrophic species to a dominance of urban-tolerant, eutrophic species. The implications these dramatic shifts in species composition have on essential PNW ecosystem processes, like N-fixation and canopy microclimate regulation, is still not well understood and is difficult to formally evaluate. However, I find strong evidence that native conifer trees in urban areas may provide a diversity of essential ecosystem services, including providing stratified habitat for epiphyte communities and their associated micro arthropod communities and the scavenging of atmospherically deposited nutrients. Future work is needed to understand how losses in canopy N fixation and species with large biomass (both lichens and bryophytes) will affect nutrient and hydrologic cycling in the PNW region, which continue to undergo rapid growth and urbanization. The final chapter investigates the impacts of passive warming by Open Top Chambers (OTCs) in moss-dominated ecosystems located on the Western Antarctic Peninsula, an area of increasing climate warming. I compared species-specific temperature effects, moss canopy morphology, sexual reproductive effort and invertebrate communities between OTC and control moss communities for two moss species, Polytrichastrum alpinum and Sanionia uncinata, that make up over 65% of the terrestrial vegetative cover in the area. I found distinct reproductive shifts in P. alpinum under passive warming compared to controls. Moss communities under warming also had substantially larger total invertebrate communities than those in control moss communities, and invertebrate communities were significantly affected by moss species and moss reproductive effort. Further, substantial species-specific thermal differences among contiguous patches of these dominant moss species were revealed. These results suggest that continued warming will differentially impact the reproductive output of Antarctic moss species and is likely to dramatically alter terrestrial ecosystems dynamics from the bottom up. This combined work provides a diverse contribution to the field of epiphyte ecology and biology by providing new insights on how human impacts will affect epiphyte lichen and moss communities across diverse ecosystems, in light of a rapidly changing planet. Close

• 92. [Article] Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality

  Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native ...

  Citation × Citation Citation Abstract Copy Title: Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality Author: Turner, Brian Christopher Year: 2017 Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. However, the impacts of predator and human induced mortality may be mitigated by the behavior or population-level responses of a given non-native species. My dissertation examined the responses of non-native aquatic species to the risk of predation by novel (i.e., no previous exposure) predators in the recipient community and indicators of potential compensatory responses by non-native populations to increased mortality resulting from removal efforts. My dissertation addresses four primary questions. 1) Can first generation, naïve invaders recognize and defend against predators found within the region of invasion through the expression of inducible defenses? 2) Can the overcompensatory potential of a population be predicted though examinations of intraspecific interactions of individuals from the population? 3) What is the relationship between removal effort outcome (i.e., successful or unsuccessful reduction of the target population) and compensatory population responses? 4) Is there a relationship between characteristics of removal efforts that are typically available to managers (e.g., target area size, target area connectivity, removal methodology) and compensatory population responses that could indicate the relative likelihood of compensation resulting from removal efforts? An invading species should be more likely to establish if it can successfully identify and defend against predators in the recipient range, such as through the expression of inducible defenses. Inducible defenses are behavioral or physiological changes that reduce an organism's susceptibility to predation. Through a series of laboratory experiments, I tested whether inducible defenses, in the form of increased burrowing depth, may have benefited the early stage of invasion of Nuttallia obscurata (purple varnish clam), an established Northeast Pacific invader. Specimens of N. obscurata were collected from introduced populations in the Northeast Pacific and from a native population in Japan. The clams were exposed to chemical and physical cues from Northeast Pacific crab predators, including the native Metacarcinus magister (Dungeness crab), an abundant and frequent predator of N. obscurata. While introduced N. obscurata increased their burrowing depth in the physical presence of M. magister, clams collected from their native range showed no such response. This lack of increased burrowing depth by naïve clams in response to a predator native to the newly invaded range, but a significant increase in depth for clams from populations established in the range suggests that while inducible defenses likely did not contribute to the initial establishment of N. obscurata in the Northeast Pacific, they may contribute to their continued persistence and expansion in their introduced range. Some efforts to reduce invasive populations have paradoxically led to population increases. This phenomenon, referred to as overcompensation, occurs when strong negative density-dependent interactions are reduced through increased mortality within a population, resulting in an increase in the population's recruitment rate sufficient to increase the population's overall abundance. Increases in a population's recruitment rate can result from reduced cannibalism of juveniles resulting in lower mortality of new recruits, from increased adult reproductive output, which increases the number of potential recruits, or from reductions in size and/or age at maturity of the unharvested population, which increases the number of reproductive individuals. I predicted the overcompensatory potential of a population of Carcinus maenas (European green crab) in Bodega Harbor, California, using a series of laboratory and field experiments examining intraspecific pressures of adults on juveniles in the population. This measure of intraspecific pressure was used to predict the overcompensatory potential of the population in response to increased mortality from ongoing removal efforts. This prediction was then assessed using pre- and post-removal surveys of juvenile recruitment in Bodega Harbor compared to nearby populations, testing for evidence of overcompensation. While adult C. maenas in Bodega Harbor had limited negative impacts on juveniles, I concluded it was unlikely to result in overcompensation. Relative juvenile abundance did not statistically increase in removal compared to reference populations, consistent with my conclusion from the experiments. Increases in recruitment rates can occur as a result of efforts to remove non-native species. This increase in recruitment can result in overcompensation, but more commonly results in compensation, where recruitment rates increase relative to pre-removal recruitment but does not result in in the population's abundance exceeding pre-removal levels. However, a detailed and accurate prediction of the response of a population to harvest is time consuming and data intensive. This is not feasible for most efforts to eradicate non-native species, which have the greatest chance of success when enacted rapidly after detection. For my final chapter, I performed a literature review and accompanying statistical analysis to determine if typically available information related to the removal effort (site size, site connectivity, and removal technique) could be used to determine increased risk of compensation for a given effort to remove aquatic invasive species. Compensation was closely linked to unsuccessful removal efforts and was observed only among efforts utilizing physical removal methods. However, the frequency with which compensation occurred varied with the exact technique employed, occurring most frequently in removal utilizing electrofishing. Additionally, evidence of compensation was more frequent among larger removal areas with variable connectivity. While other predictors (temperature, effort, etc) might add to the predicative power, the findings of the review provide criteria for managers to determine the relative risk of compensation prior to the start of removal. Further understanding of how invasive species respond to lethal biotic interactions, including anthropogenically mediated control measures, can aid in assessing the risk of invasion for a given species and inform managers of the risk of complications resulting from removal efforts. While inducible defenses may contribute to the long-term success of an introduced species in their recipient range, my findings did not support the idea that inducible defenses triggered by predator cues contributed to their initial introduction in this case. However, research on other non-native species and offspring of previously naïve prey would allow for a clearer picture of the role of inducible defenses in the invasion process. Compensation resulting from removal efforts does not guarantee failure, and certain characteristics of removal efforts seem to indicate increased risk of compensation. Together these components help identify how biotic interactions surrounding mortality risk of an invading species help shape the trajectory of invasion. Title: Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality Author: Turner, Brian Christopher Year: 2017 Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. However, the impacts of predator and human induced mortality may be mitigated by the behavior or population-level responses of a given non-native species. My dissertation examined the responses of non-native aquatic species to the risk of predation by novel (i.e., no previous exposure) predators in the recipient community and indicators of potential compensatory responses by non-native populations to increased mortality resulting from removal efforts. My dissertation addresses four primary questions. 1) Can first generation, naïve invaders recognize and defend against predators found within the region of invasion through the expression of inducible defenses? 2) Can the overcompensatory potential of a population be predicted though examinations of intraspecific interactions of individuals from the population? 3) What is the relationship between removal effort outcome (i.e., successful or unsuccessful reduction of the target population) and compensatory population responses? 4) Is there a relationship between characteristics of removal efforts that are typically available to managers (e.g., target area size, target area connectivity, removal methodology) and compensatory population responses that could indicate the relative likelihood of compensation resulting from removal efforts? An invading species should be more likely to establish if it can successfully identify and defend against predators in the recipient range, such as through the expression of inducible defenses. Inducible defenses are behavioral or physiological changes that reduce an organism's susceptibility to predation. Through a series of laboratory experiments, I tested whether inducible defenses, in the form of increased burrowing depth, may have benefited the early stage of invasion of Nuttallia obscurata (purple varnish clam), an established Northeast Pacific invader. Specimens of N. obscurata were collected from introduced populations in the Northeast Pacific and from a native population in Japan. The clams were exposed to chemical and physical cues from Northeast Pacific crab predators, including the native Metacarcinus magister (Dungeness crab), an abundant and frequent predator of N. obscurata. While introduced N. obscurata increased their burrowing depth in the physical presence of M. magister, clams collected from their native range showed no such response. This lack of increased burrowing depth by naïve clams in response to a predator native to the newly invaded range, but a significant increase in depth for clams from populations established in the range suggests that while inducible defenses likely did not contribute to the initial establishment of N. obscurata in the Northeast Pacific, they may contribute to their continued persistence and expansion in their introduced range. Some efforts to reduce invasive populations have paradoxically led to population increases. This phenomenon, referred to as overcompensation, occurs when strong negative density-dependent interactions are reduced through increased mortality within a population, resulting in an increase in the population's recruitment rate sufficient to increase the population's overall abundance. Increases in a population's recruitment rate can result from reduced cannibalism of juveniles resulting in lower mortality of new recruits, from increased adult reproductive output, which increases the number of potential recruits, or from reductions in size and/or age at maturity of the unharvested population, which increases the number of reproductive individuals. I predicted the overcompensatory potential of a population of Carcinus maenas (European green crab) in Bodega Harbor, California, using a series of laboratory and field experiments examining intraspecific pressures of adults on juveniles in the population. This measure of intraspecific pressure was used to predict the overcompensatory potential of the population in response to increased mortality from ongoing removal efforts. This prediction was then assessed using pre- and post-removal surveys of juvenile recruitment in Bodega Harbor compared to nearby populations, testing for evidence of overcompensation. While adult C. maenas in Bodega Harbor had limited negative impacts on juveniles, I concluded it was unlikely to result in overcompensation. Relative juvenile abundance did not statistically increase in removal compared to reference populations, consistent with my conclusion from the experiments. Increases in recruitment rates can occur as a result of efforts to remove non-native species. This increase in recruitment can result in overcompensation, but more commonly results in compensation, where recruitment rates increase relative to pre-removal recruitment but does not result in in the population's abundance exceeding pre-removal levels. However, a detailed and accurate prediction of the response of a population to harvest is time consuming and data intensive. This is not feasible for most efforts to eradicate non-native species, which have the greatest chance of success when enacted rapidly after detection. For my final chapter, I performed a literature review and accompanying statistical analysis to determine if typically available information related to the removal effort (site size, site connectivity, and removal technique) could be used to determine increased risk of compensation for a given effort to remove aquatic invasive species. Compensation was closely linked to unsuccessful removal efforts and was observed only among efforts utilizing physical removal methods. However, the frequency with which compensation occurred varied with the exact technique employed, occurring most frequently in removal utilizing electrofishing. Additionally, evidence of compensation was more frequent among larger removal areas with variable connectivity. While other predictors (temperature, effort, etc) might add to the predicative power, the findings of the review provide criteria for managers to determine the relative risk of compensation prior to the start of removal. Further understanding of how invasive species respond to lethal biotic interactions, including anthropogenically mediated control measures, can aid in assessing the risk of invasion for a given species and inform managers of the risk of complications resulting from removal efforts. While inducible defenses may contribute to the long-term success of an introduced species in their recipient range, my findings did not support the idea that inducible defenses triggered by predator cues contributed to their initial introduction in this case. However, research on other non-native species and offspring of previously naïve prey would allow for a clearer picture of the role of inducible defenses in the invasion process. Compensation resulting from removal efforts does not guarantee failure, and certain characteristics of removal efforts seem to indicate increased risk of compensation. Together these components help identify how biotic interactions surrounding mortality risk of an invading species help shape the trajectory of invasion. Close

• 93. [Article] Fetal Stress and Neurogenesis in Thamnophis sirtalis parietalis

  Little is currently known about normal brain development and the growth of new nerve cells, known as neurogenesis, in most species, let alone how exposure to prenatal stress affects these processes. Using ...

  Citation × Citation Citation Abstract Copy Title: Fetal Stress and Neurogenesis in Thamnophis sirtalis parietalis Author: Stratton, Kalera Year: 2016 Little is currently known about normal brain development and the growth of new nerve cells, known as neurogenesis, in most species, let alone how exposure to prenatal stress affects these processes. Using red-sided garter snakes as our animal model, we have a unique opportunity to study the impact of exposure to elevated maternal glucocorticoids, commonly known as "stress hormones", on brain development. This species is viviparous, with a proto-placental structure through which developing fetuses receive nutrients from the dam. Adult snakes also exhibit high rates of seasonal changes in neurogenesis. We captured mated female snakes and treated one-third of them with subcutaneous glucocorticoid hormone implants, one-third with subcutaneous metyrapone, a glucocorticoid synthesis inhibitor, and one-third with a subcutaneous blank control capsule. At ~14 weeks following birth, we injected the neonates with BrdU, a thymidine analog that is incorporated into the DNA of newly-formed cells. We euthanized the neonates at ~15 weeks of age. Immunohistochemistry for BrdU was followed by manually counting the number of stained neurons and statistical analyses to determine differences in neurogenesis between groups. The metyrapone-treated group had significantly reduced brain cell proliferation compared to the control group (P=0.024). While the difference was not statistically significant (P=0.058), the corticosterone group also had reduced brain cell proliferation compared to the control group. These findings suggest that animals whose glucocorticoid levels are disrupted by environmental factors (i.e. heavy predation threat or compromised habitat) produce offspring with compromised brain development. Title: Fetal Stress and Neurogenesis in Thamnophis sirtalis parietalis Author: Stratton, Kalera Year: 2016 Little is currently known about normal brain development and the growth of new nerve cells, known as neurogenesis, in most species, let alone how exposure to prenatal stress affects these processes. Using red-sided garter snakes as our animal model, we have a unique opportunity to study the impact of exposure to elevated maternal glucocorticoids, commonly known as "stress hormones", on brain development. This species is viviparous, with a proto-placental structure through which developing fetuses receive nutrients from the dam. Adult snakes also exhibit high rates of seasonal changes in neurogenesis. We captured mated female snakes and treated one-third of them with subcutaneous glucocorticoid hormone implants, one-third with subcutaneous metyrapone, a glucocorticoid synthesis inhibitor, and one-third with a subcutaneous blank control capsule. At ~14 weeks following birth, we injected the neonates with BrdU, a thymidine analog that is incorporated into the DNA of newly-formed cells. We euthanized the neonates at ~15 weeks of age. Immunohistochemistry for BrdU was followed by manually counting the number of stained neurons and statistical analyses to determine differences in neurogenesis between groups. The metyrapone-treated group had significantly reduced brain cell proliferation compared to the control group (P=0.024). While the difference was not statistically significant (P=0.058), the corticosterone group also had reduced brain cell proliferation compared to the control group. These findings suggest that animals whose glucocorticoid levels are disrupted by environmental factors (i.e. heavy predation threat or compromised habitat) produce offspring with compromised brain development. Close

• 94. [Article] The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats

  Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation ...

  Citation × Citation Citation Abstract Copy Title: The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats Author: McClees, Whitney, de Rivera, Catherine E. Year: 2017 Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation is limiting the spread of non-native species, while other research has indicated that it is dispersal-driven. To determine the effects of dispersal limitation and predation on the risk to surrounding habitats of being invaded by non-native species established on marina docks, we used a three-factor design, deploying seven unglazed ceramic panels per each treatment combination of 1) inside versus outside a marina in Yaquina Bay, Oregon; 2) cage keeping out predators >mesh size, no cage, or partial cage; 3) fixed near the substrata (benthic) versus floating 1m below the surface. We also moved panels of either adults or recruits from floating in the marina to any of the treatment combinations to test if they would have lower survival outside by the substrate. The community on panels suspended in the marina only minimally overlapped with panels outside of the marina near the bottom. However, there was no difference between the cage treatments, which suggests that predators excluded by the cages are not responsible for the observed differences in species richness or composition. Title: The Limitation of Spread of Non-native Marine Invertebrates from Artificial Structures to Natural Habitats Author: McClees, Whitney, de Rivera, Catherine E. Year: 2017 Artificial structures created for aquatic anthropogenic activities are often colonized and fouled by many non-native species, few of which have invaded natural areas. Some research has indicated predation is limiting the spread of non-native species, while other research has indicated that it is dispersal-driven. To determine the effects of dispersal limitation and predation on the risk to surrounding habitats of being invaded by non-native species established on marina docks, we used a three-factor design, deploying seven unglazed ceramic panels per each treatment combination of 1) inside versus outside a marina in Yaquina Bay, Oregon; 2) cage keeping out predators >mesh size, no cage, or partial cage; 3) fixed near the substrata (benthic) versus floating 1m below the surface. We also moved panels of either adults or recruits from floating in the marina to any of the treatment combinations to test if they would have lower survival outside by the substrate. The community on panels suspended in the marina only minimally overlapped with panels outside of the marina near the bottom. However, there was no difference between the cage treatments, which suggests that predators excluded by the cages are not responsible for the observed differences in species richness or composition. Close

• 95. [Article] Effects of Beaver Dams on Surface Water Flow During Storm Events in an Urban Landscape

  Urban land-use generally alters the hydrologic cycle, leading to changes in the natural flow regime of local streams. Runoff from impervious surfaces and routing of stormwater to streams causes urban streams ...

  Citation × Citation Citation Abstract Copy Title: Effects of Beaver Dams on Surface Water Flow During Storm Events in an Urban Landscape Author: Poor, Erin Year: 2017 Urban land-use generally alters the hydrologic cycle, leading to changes in the natural flow regime of local streams. Runoff from impervious surfaces and routing of stormwater to streams causes urban streams to respond quickly and more intensely to storm events-more so than then would be observed in a less urbanized landscape. The rapid pulse of water that is routed to streams during precipitation events can degrade the physical structure of the channel and alter water quality and habitat availability. To manage these common urban stream issues, agencies have been seeking alternative ways of restoring and enhancing resilience in urban stream networks within the constraints of existing infrastructure. One potential strategy may be to support beaver recolonization of urban streams. This is because beaver dam building activity has been found to attenuate streamflow in areas that have experienced minimal human impact. Currently, however, no studies have been published that examine how beaver dams affect stream flow in altered urban systems. This study seeks to determine if the presence of beaver dams and ponds in urban stream reaches in the Tualatin River basin, Oregon, modifies the stream’s response to storm events. Continuous surface water levels are being collected upstream and downstream of two beaver affected reaches in order to determine how the presence of dams and ponds affect the flow regime, and whether this more closely resembles a less degraded state. Title: Effects of Beaver Dams on Surface Water Flow During Storm Events in an Urban Landscape Author: Poor, Erin Year: 2017 Urban land-use generally alters the hydrologic cycle, leading to changes in the natural flow regime of local streams. Runoff from impervious surfaces and routing of stormwater to streams causes urban streams to respond quickly and more intensely to storm events-more so than then would be observed in a less urbanized landscape. The rapid pulse of water that is routed to streams during precipitation events can degrade the physical structure of the channel and alter water quality and habitat availability. To manage these common urban stream issues, agencies have been seeking alternative ways of restoring and enhancing resilience in urban stream networks within the constraints of existing infrastructure. One potential strategy may be to support beaver recolonization of urban streams. This is because beaver dam building activity has been found to attenuate streamflow in areas that have experienced minimal human impact. Currently, however, no studies have been published that examine how beaver dams affect stream flow in altered urban systems. This study seeks to determine if the presence of beaver dams and ponds in urban stream reaches in the Tualatin River basin, Oregon, modifies the stream’s response to storm events. Continuous surface water levels are being collected upstream and downstream of two beaver affected reaches in order to determine how the presence of dams and ponds affect the flow regime, and whether this more closely resembles a less degraded state. Close

• 96. [Article] Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species

  In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project ...

  Citation × Citation Citation Abstract Copy Title: Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species Author: Gulick, Kristen S., West, Nikkie, Dresner, Marion Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Title: Community Science and the Ecological Merits of Backyard Habitat Patches and Adjacent Green-Spaces for Urban Avian Species Author: Gulick, Kristen S., West, Nikkie, Dresner, Marion Year: 2017 In what ways do small-scale urban backyards contribute to local bird abundance and biodiversity? In what ways might these yards serve as an ‘extension’ of neighboring native forest areas? This project investigates the contribution that a group of backyards, certified through the Backyard Habitat Certification Program, have in the suburb of Hillsdale, Oregon, which is adjacent to the natural area of Keller Woodland. Backyard owners functioning as citizen or community scientists assisted with conducting residential bird point-counts once a week in each backyard and the natural area. Counts were done for a total of 8 weeks during nesting season to better understand how backyard habitat restoration might affect their habitat especially when in close proximity to a natural area. The goal of the project was to help better understand the beneficial effects of urban gardening using native plants and diverse vegetation structure as this relates to bird species richness, and to explore the importance of community scientist contributions. Although the sample size was small, no significant trends were found, but the involvement of community scientists indicated increased skill, depth of understanding, and increased motivation for all participating backyard habitat owners. More backyards are needed for future research and extension into lower-income neighborhoods would be very beneficial to increase awareness of urban habitat connectivity and the diversity seen in backyard environmental characteristics and yard owner backyard habitat knowledge. A larger sample size could reveal correlations and provide a greater significance in data findings for bird abundance and diversity. A logical extension of this project would be to investigate food-web effects, specifically avian prey species, and smaller green-spaces that are often present in urban neighborhoods in addition to the large green-spaces. Close

• 97. [Article] Modeling the effectiveness of riparian restoration on stream shading in the Clackamas River Basin

  Rivers and streams within the Clackamas River Basin are not currently meeting water quality standards in terms of temperature. The Clackamas River Basin Council (CRBC) designed a restoration program to ...

  Citation × Citation Citation Abstract Copy Title: Modeling the effectiveness of riparian restoration on stream shading in the Clackamas River Basin Author: Barksdale, Rachel Year: 2017 Rivers and streams within the Clackamas River Basin are not currently meeting water quality standards in terms of temperature. The Clackamas River Basin Council (CRBC) designed a restoration program to address the thermal loading on behalf of Portland General Electric (PGE) in which native trees and shrubs are planted along streams to restore riparian canopy cover. Solar radiation can be blocked by restoring canopy cover and is an effective way to provide shade, as well as providing ancillary environmental benefits such as enhanced wildlife habitat and erosion control. Stream and vegetation data were collected at nine sites to model the increase in shade from the restoration plantings. Using DEQ’s Shade-a-lator model, shade was predicted in future scenarios at 10, 20, and 50 years compared to the current baseline condition. Modeling results suggest increases in shade at each site, which will help to mitigate excessive thermal inputs. The predicted scenarios provide a framework to evaluate the effectiveness of CRBC’s restoration program. Title: Modeling the effectiveness of riparian restoration on stream shading in the Clackamas River Basin Author: Barksdale, Rachel Year: 2017 Rivers and streams within the Clackamas River Basin are not currently meeting water quality standards in terms of temperature. The Clackamas River Basin Council (CRBC) designed a restoration program to address the thermal loading on behalf of Portland General Electric (PGE) in which native trees and shrubs are planted along streams to restore riparian canopy cover. Solar radiation can be blocked by restoring canopy cover and is an effective way to provide shade, as well as providing ancillary environmental benefits such as enhanced wildlife habitat and erosion control. Stream and vegetation data were collected at nine sites to model the increase in shade from the restoration plantings. Using DEQ’s Shade-a-lator model, shade was predicted in future scenarios at 10, 20, and 50 years compared to the current baseline condition. Modeling results suggest increases in shade at each site, which will help to mitigate excessive thermal inputs. The predicted scenarios provide a framework to evaluate the effectiveness of CRBC’s restoration program. Close

• 98. [Article] Non-native Mangroves of Moloka’i, Hawai’i: A Socio-ecological Analysis

  Invasive species are recognized as a leading threat to biodiversity and their management is expensive, time consuming, and labor intensive. Therefore, it is important to review both benefits and detriments ...

  Citation × Citation Citation Abstract Copy Title: Non-native Mangroves of Moloka’i, Hawai’i: A Socio-ecological Analysis Author: Lewis, Casey Year: 2017 Invasive species are recognized as a leading threat to biodiversity and their management is expensive, time consuming, and labor intensive. Therefore, it is important to review both benefits and detriments of the species to inform appropriate management decisions. Red mangrove was introduced to Moloka'i, Hawaii in 1902 to mitigate the effects of soil erosion and has since spread along the coast and to adjacent islands creating novel habitat. This study assessed both biological services and social attitudes towards Moloka'i's non-native mangroves to provide a comprehensive evaluation of the species. Zooplankton community structure was examined in mangrove and non-mangrove sites and found to be different depending on the amount of mangroves present. Surveys of Moloka'i residents revealed no majority attitude towards mangroves nor support for complete eradication but residents were highly supportive of active management. Approaching other novel ecosystems created by established non-native species from a socio-ecological view may become more crucial as changes in climate, demographics, and environmental conditions further complicate effects. In our globalized world, non-native species introductions will continue to have both positive and negative effects that vary over time. Therefore, assessment of both social and ecological perspectives may lead to more effective management with greater community support. Title: Non-native Mangroves of Moloka’i, Hawai’i: A Socio-ecological Analysis Author: Lewis, Casey Year: 2017 Invasive species are recognized as a leading threat to biodiversity and their management is expensive, time consuming, and labor intensive. Therefore, it is important to review both benefits and detriments of the species to inform appropriate management decisions. Red mangrove was introduced to Moloka'i, Hawaii in 1902 to mitigate the effects of soil erosion and has since spread along the coast and to adjacent islands creating novel habitat. This study assessed both biological services and social attitudes towards Moloka'i's non-native mangroves to provide a comprehensive evaluation of the species. Zooplankton community structure was examined in mangrove and non-mangrove sites and found to be different depending on the amount of mangroves present. Surveys of Moloka'i residents revealed no majority attitude towards mangroves nor support for complete eradication but residents were highly supportive of active management. Approaching other novel ecosystems created by established non-native species from a socio-ecological view may become more crucial as changes in climate, demographics, and environmental conditions further complicate effects. In our globalized world, non-native species introductions will continue to have both positive and negative effects that vary over time. Therefore, assessment of both social and ecological perspectives may lead to more effective management with greater community support. Close

• 99. [Article] Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary

  In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, ...

  Citation × Citation Citation Abstract Copy Title: Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary Author: Kidd, Sarah Ann Year: 2017 In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, salinity levels). How these controls influence the success of tidal wetland restoration are only partly understood, but have important implications for wetland habitat recovery. Specifically, the extent to which the existing native and non-native seed banks in tidally reconnected wetlands interact with these controls is not clear, yet the potential success of passive restoration methods depends upon this understanding. For a 54-year chronosequence of eleven tidal wetland restoration sites in the Lower Columbia River of western Oregon, USA, it was hypothesized that native plant species and soil properties would show trends approaching reference levels within 3 to 20 years post-restoration and that lower elevation wetland areas within restored sites would exhibit a greater native species abundance and similarity to reference sites, compared with restored high elevation wetland areas. Results indicated that plant species richness, soil organic matter, bulk density, pH, and salinity conditions among the restoration sites reached reference wetland ranges within 3-6 years post-tidal reconnection. The mid-low marsh elevation zones (2.5 m) remained dominated by non-native species Phalaris arundinacea and Juncus effusus subsp. effusus. To investigate the mechanisms driving these non-native plant invasions, it was hypothesized that native and non-native wetland plant community distributions would be reflective both of their abundance in the seed bank and of their germination tolerance to wetland tidal flooding and salinity conditions. Using a factorial study design of three tidal conditions by three salinity levels, these hypotheses were tested in the greenhouse. Overall, non-native seeds were found to significantly outnumber native seeds in both seed banks. In the greenhouse, P. arundinacea and J. effusus were found to germinate more readily out of the seed bank under freshwater high-marsh flooding (1 hour a day) treatments as compared to oligohaline (3 ppt) mid-low marsh flooding (3-6 hours twice a day) treatments and to brackish salinity (10 ppt) treatments. Dominant native wetland species, Carex lyngbyei and Schoenoplectus lacustris, germination were not found to vary significantly among the treatments (p > 0.10). These results indicate that the salinity and flooding gradients within these restored marshes suppress germination of the non-native species in the low-mid marsh but not in the high marsh, where they are likely able to outcompete the native species due to their dominance in the seed bank. The implications of these results for passive tidal wetland restoration efforts are that both seed bank composition and species-specific tolerances to restored tidal flooding and salinity gradients are key mechanisms driving native and non-native plant community development and resilience. Title: Ecosystem Recovery in Estuarine Wetlands of the Columbia River Estuary Author: Kidd, Sarah Ann Year: 2017 In the restoration of tidal wetland ecosystems, potential drivers of plant community development range from biotic controls (e.g. plant competition, seed dispersal) to abiotic controls (e.g. tidal flooding, salinity levels). How these controls influence the success of tidal wetland restoration are only partly understood, but have important implications for wetland habitat recovery. Specifically, the extent to which the existing native and non-native seed banks in tidally reconnected wetlands interact with these controls is not clear, yet the potential success of passive restoration methods depends upon this understanding. For a 54-year chronosequence of eleven tidal wetland restoration sites in the Lower Columbia River of western Oregon, USA, it was hypothesized that native plant species and soil properties would show trends approaching reference levels within 3 to 20 years post-restoration and that lower elevation wetland areas within restored sites would exhibit a greater native species abundance and similarity to reference sites, compared with restored high elevation wetland areas. Results indicated that plant species richness, soil organic matter, bulk density, pH, and salinity conditions among the restoration sites reached reference wetland ranges within 3-6 years post-tidal reconnection. The mid-low marsh elevation zones (2.5 m) remained dominated by non-native species Phalaris arundinacea and Juncus effusus subsp. effusus. To investigate the mechanisms driving these non-native plant invasions, it was hypothesized that native and non-native wetland plant community distributions would be reflective both of their abundance in the seed bank and of their germination tolerance to wetland tidal flooding and salinity conditions. Using a factorial study design of three tidal conditions by three salinity levels, these hypotheses were tested in the greenhouse. Overall, non-native seeds were found to significantly outnumber native seeds in both seed banks. In the greenhouse, P. arundinacea and J. effusus were found to germinate more readily out of the seed bank under freshwater high-marsh flooding (1 hour a day) treatments as compared to oligohaline (3 ppt) mid-low marsh flooding (3-6 hours twice a day) treatments and to brackish salinity (10 ppt) treatments. Dominant native wetland species, Carex lyngbyei and Schoenoplectus lacustris, germination were not found to vary significantly among the treatments (p > 0.10). These results indicate that the salinity and flooding gradients within these restored marshes suppress germination of the non-native species in the low-mid marsh but not in the high marsh, where they are likely able to outcompete the native species due to their dominance in the seed bank. The implications of these results for passive tidal wetland restoration efforts are that both seed bank composition and species-specific tolerances to restored tidal flooding and salinity gradients are key mechanisms driving native and non-native plant community development and resilience. Close

• 100. [Article] Evaluating Simplistic Methods to Understand Current Distributions and Forecast Distribution Changes Under Climate Change Scenarios: An Example With Coypu (Myocastor coypus)

  Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. ...

  Citation × Citation Citation Abstract Copy Title: Evaluating Simplistic Methods to Understand Current Distributions and Forecast Distribution Changes Under Climate Change Scenarios: An Example With Coypu (Myocastor coypus) Author: Jarnevich, Catherine S., Young, Nicholas E., Sheffels, Trevor R., Carter, Jacoby, Sytsma, Mark D., Talbert, Colin Year: 2017 Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu (Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling and biologically relevant climate data with a global extent. We applied the ecophysiological based model to several global circulation model (GCM) predictions for mid-century. We used global coypu introduction data to evaluate these models and to explore a hypothesized physiological limitation, finding general agreement with known coypu distribution locally and globally and support for an upper thermal tolerance threshold. Global circulation model based model results showed variability in coypu predicted distribution among GCMs, but had general agreement of increasing suitable area in the USA. Our methods highlighted the dynamic nature of the edges of the coypu distribution due to climate non-equilibrium, and uncertainty associated with forecasting future distributions. Areas deemed suitable habitat, especially those on the edge of the current known range, could be used for early detection of the spread of coypu populations for management purposes. Combining approaches can be beneficial to predicting potential distributions of invasive species now and in the future and in exploring hypotheses of factors controlling distributions. Title: Evaluating Simplistic Methods to Understand Current Distributions and Forecast Distribution Changes Under Climate Change Scenarios: An Example With Coypu (Myocastor coypus) Author: Jarnevich, Catherine S., Young, Nicholas E., Sheffels, Trevor R., Carter, Jacoby, Sytsma, Mark D., Talbert, Colin Year: 2017 Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu (Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling and biologically relevant climate data with a global extent. We applied the ecophysiological based model to several global circulation model (GCM) predictions for mid-century. We used global coypu introduction data to evaluate these models and to explore a hypothesized physiological limitation, finding general agreement with known coypu distribution locally and globally and support for an upper thermal tolerance threshold. Global circulation model based model results showed variability in coypu predicted distribution among GCMs, but had general agreement of increasing suitable area in the USA. Our methods highlighted the dynamic nature of the edges of the coypu distribution due to climate non-equilibrium, and uncertainty associated with forecasting future distributions. Areas deemed suitable habitat, especially those on the edge of the current known range, could be used for early detection of the spread of coypu populations for management purposes. Combining approaches can be beneficial to predicting potential distributions of invasive species now and in the future and in exploring hypotheses of factors controlling distributions. Close