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• 71. [Article] A Hierarchical Modeling Approach to Simulating the Geomorphic Response of River Systems to Climate Change

  Anthropogenic climate change significantly affects water resources. River flows in mountainous regions are driven by snowmelt and are therefore highly sensitive to increases in temperature resulting from ...

  Citation × Citation Citation Abstract Copy Title: A Hierarchical Modeling Approach to Simulating the Geomorphic Response of River Systems to Climate Change Author: Praskievicz, Sarah Year: 2014 Anthropogenic climate change significantly affects water resources. River flows in mountainous regions are driven by snowmelt and are therefore highly sensitive to increases in temperature resulting from climate change. Climate-driven hydrological changes are potentially significant for the fluvial geomorphology of river systems. In unchanging climatic and tectonic conditions, a river's morphology will develop in equilibrium with inputs of water and sediment, but climate change represents a potential forcing on these variables that may push the system into disequilibrium and cause significant changes in river morphology. Geomorphic factors, such as channel geometry, planform, and sediment transport, are major determinants of the value of river systems, including their suitability for threatened and endangered species and for human uses of water. This dissertation research uses a hierarchical modeling approach to investigate potential impacts of anthropogenic climate change on river morphology in the interior Pacific Northwest. The research will address the following theoretical and methodological objectives: 1) Develop downscaled climate change scenarios, based on regional climate-model output, including changes in daily minimum and maximum temperature and precipitation. 2) Estimate how climate change scenarios affect river discharge and suspended-sediment load, using a basin-scale hydrologic model. 3) Examine potential impacts of climate-driven hydrologic changes on stream power and shear stress, bedload sediment transport, and river morphology, including channel geometry and planform. The downscaling approach, based on empirically-estimated local topographic lapse rates, produces high-resolution climate grids with positive forecast skill. The hydrologic modeling results indicate that projected climate change in the study rivers will change the annual cycle of hydrology, with increased winter discharge, a decrease in the magnitude of the spring snowmelt peak, and decreased summer discharge. Geomorphic modeling results suggest that changes in reach-averaged bedload transport are highly sensitive to likely changes in the recurrence interval of the critical discharge needed to mobilize bed sediments. This dissertation research makes an original contribution to the climate-change impacts literature by linking Earth processes across a wide range of spatial scales to project changes in river systems that may be significant for management of these systems for societal and ecological benefits. This dissertation includes unpublished co-authored material. Title: A Hierarchical Modeling Approach to Simulating the Geomorphic Response of River Systems to Climate Change Author: Praskievicz, Sarah Year: 2014 Anthropogenic climate change significantly affects water resources. River flows in mountainous regions are driven by snowmelt and are therefore highly sensitive to increases in temperature resulting from climate change. Climate-driven hydrological changes are potentially significant for the fluvial geomorphology of river systems. In unchanging climatic and tectonic conditions, a river's morphology will develop in equilibrium with inputs of water and sediment, but climate change represents a potential forcing on these variables that may push the system into disequilibrium and cause significant changes in river morphology. Geomorphic factors, such as channel geometry, planform, and sediment transport, are major determinants of the value of river systems, including their suitability for threatened and endangered species and for human uses of water. This dissertation research uses a hierarchical modeling approach to investigate potential impacts of anthropogenic climate change on river morphology in the interior Pacific Northwest. The research will address the following theoretical and methodological objectives: 1) Develop downscaled climate change scenarios, based on regional climate-model output, including changes in daily minimum and maximum temperature and precipitation. 2) Estimate how climate change scenarios affect river discharge and suspended-sediment load, using a basin-scale hydrologic model. 3) Examine potential impacts of climate-driven hydrologic changes on stream power and shear stress, bedload sediment transport, and river morphology, including channel geometry and planform. The downscaling approach, based on empirically-estimated local topographic lapse rates, produces high-resolution climate grids with positive forecast skill. The hydrologic modeling results indicate that projected climate change in the study rivers will change the annual cycle of hydrology, with increased winter discharge, a decrease in the magnitude of the spring snowmelt peak, and decreased summer discharge. Geomorphic modeling results suggest that changes in reach-averaged bedload transport are highly sensitive to likely changes in the recurrence interval of the critical discharge needed to mobilize bed sediments. This dissertation research makes an original contribution to the climate-change impacts literature by linking Earth processes across a wide range of spatial scales to project changes in river systems that may be significant for management of these systems for societal and ecological benefits. This dissertation includes unpublished co-authored material. Close

• 72. [Article] Constructed Wetland Suitability Analysis in Oregon

  51 pages

  Citation × Citation Citation Abstract Copy Title: Constructed Wetland Suitability Analysis in Oregon Author: Collins, Kyle Year: 2017 51 pages Title: Constructed Wetland Suitability Analysis in Oregon Author: Collins, Kyle Year: 2017 51 pages Close

• 73. [Article] The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion

  This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern ...

  Citation × Citation Citation Abstract Copy Title: The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion Author: Redmond, Lucas J. Year: 2015 This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern Oregon from 2003 to 2009. Kingbirds are long-distance migratory songbirds that breed across much of North America. This species is socially monogamous but, via frequent extra-pair copulations, is genetically polygamous. Kingbirds exhibit relatively high breeding site fidelity, often returning to the same tree to nest in subsequent years. Both members of a pair provide parental care, but there are often specific duties performed by both male and female kingbirds. For example, males typically perform much of the vigilant nest defense that this species is well known for and contribute, to an extent, to the feeding of nestlings. Females, on the other hand, are entirely responsible for incubating and brooding. Beginning in 2002, most adults within the population of kingbirds at Malheur had been banded with a unique combination of three colored plastic leg bands and an aluminum USFWS band. Also, as many nests were located in each year as possible, and any young that survived to fledging age were banded with a unique combination of leg bands. Considerable effort was then spent each year to locate as many banded individuals as possible, which allowed me to document adult and juvenile survival. Annual survival rates of adult male and female kingbirds in the population at Malheur did not differ and were relatively high at approximately 0.65. Juvenile survival rate was approximately 0.29, indicating that slightly less than one-third of nestlings survive the interval between fledging and their first potential breeding season. Resighting probability was high for both sexes, although higher for adult males (0.94) than for adult female (0.84). The latter finding is consistent with the higher site fidelity of males than of females. Resighting probabilities for juveniles were much lower at 0.68 and 0.40 for males and females, respectively. Again, this was expected because natal site fidelity is typically much lower than breeding site fidelity. Compared to most other reports, resighting probability and return rates of juvenile kingbirds was high, presumably because the riparian habitats where kingbirds breed at Malheur function as an ecological island surrounded by, for kingbirds, unsuitable high desert habitat. Thus, unless they disperse very long distances, the only option for juvenile kingbirds is to begin nesting on the refuge. The collection of blood samples from birds has become an increasingly common practice in ornithology. The data that can be gained from these samples allow a number of interesting questions to be asked such as understanding the genetic mating system of a species, patterns of hormone secretion, and discerning migratory pathways via stable isotope analysis. The volume of blood collected is usually small and was assumed to cause no long-term negative effects on sampled individuals. However, few studies have rigorously examined the effect of blood sampling on survival. I used a multistate mark-recapture analysis to assess the effect blood sampling on annual survival of kingbirds by combining the annual survival data described above with whether or not individuals were subjected to blood sample collection. The results of this analysis indicated that blood sampling had no effect on annual survival rates of kingbirds. Whether or not this is the case for other species remains to be seen. However, my results support the assumption that when done correctly, blood sampling has little to no long-term negative effects on birds. Comparative analyses of many bird species show that testosterone secretion exhibits fairly predictable patterns among breeding birds of different mating systems. Monogamous species reach a peak during mate attraction and the period of female fertility which is then followed by a sharp decline when young are in the nest. By contrast, males of polygynous species tend to maintain higher levels of testosterone throughout the breeding season to, presumably, maximize opportunities for acquiring additional mates. Kingbirds are socially monogamous but cryptically polygamous. However, because of high rates of extra-pair paternity, variation in reproductive success among males is much higher than what is expected for a monogamous species, and, instead, is similar to what has been reported for polygynous species. Therefore from 2005 to 2009 I measured testosterone concentrations from the blood samples collected from male kingbirds to determine the breeding season profile of testosterone secretion in kingbirds and to understand the factors that influence testosterone variation among individuals. Contrary to expected for a monogamous species, the testosterone profile of kingbirds did not exhibit the brief peak in testosterone followed by a precipitous decline. Testosterone peaked early in the season, but declined very slowly as the nest cycle progressed. I attributed this gradual decline in testosterone to the cryptically polygynous nature of the kingbird extra-pair mating system. I also found substantial variation in testosterone concentration among male kingbirds and was able to identify several factors contributing to this variation. As expected, testosterone declined as the breeding season progressed (independent of stage in nest cycle) and nest density increased, while increases in testosterone were correlated with the number of fertile females within the population. This suggests that male kingbirds were capable of modulating testosterone concentrations to both cope with an increase in conspecific density, but also to ready themselves for times when extra-pair copulations were more likely. Title: The Biology of Eastern Kingbirds at Malheur National Wildlife Refuge: Survival, Reproduction, and Testosterone Secretion Author: Redmond, Lucas J. Year: 2015 This dissertation presents the results of a study that I undertook to better understand the breeding biology of Eastern Kingbirds (hereafter, kingbirds) at Malheur National Wildlife Refuge in southeastern Oregon from 2003 to 2009. Kingbirds are long-distance migratory songbirds that breed across much of North America. This species is socially monogamous but, via frequent extra-pair copulations, is genetically polygamous. Kingbirds exhibit relatively high breeding site fidelity, often returning to the same tree to nest in subsequent years. Both members of a pair provide parental care, but there are often specific duties performed by both male and female kingbirds. For example, males typically perform much of the vigilant nest defense that this species is well known for and contribute, to an extent, to the feeding of nestlings. Females, on the other hand, are entirely responsible for incubating and brooding. Beginning in 2002, most adults within the population of kingbirds at Malheur had been banded with a unique combination of three colored plastic leg bands and an aluminum USFWS band. Also, as many nests were located in each year as possible, and any young that survived to fledging age were banded with a unique combination of leg bands. Considerable effort was then spent each year to locate as many banded individuals as possible, which allowed me to document adult and juvenile survival. Annual survival rates of adult male and female kingbirds in the population at Malheur did not differ and were relatively high at approximately 0.65. Juvenile survival rate was approximately 0.29, indicating that slightly less than one-third of nestlings survive the interval between fledging and their first potential breeding season. Resighting probability was high for both sexes, although higher for adult males (0.94) than for adult female (0.84). The latter finding is consistent with the higher site fidelity of males than of females. Resighting probabilities for juveniles were much lower at 0.68 and 0.40 for males and females, respectively. Again, this was expected because natal site fidelity is typically much lower than breeding site fidelity. Compared to most other reports, resighting probability and return rates of juvenile kingbirds was high, presumably because the riparian habitats where kingbirds breed at Malheur function as an ecological island surrounded by, for kingbirds, unsuitable high desert habitat. Thus, unless they disperse very long distances, the only option for juvenile kingbirds is to begin nesting on the refuge. The collection of blood samples from birds has become an increasingly common practice in ornithology. The data that can be gained from these samples allow a number of interesting questions to be asked such as understanding the genetic mating system of a species, patterns of hormone secretion, and discerning migratory pathways via stable isotope analysis. The volume of blood collected is usually small and was assumed to cause no long-term negative effects on sampled individuals. However, few studies have rigorously examined the effect of blood sampling on survival. I used a multistate mark-recapture analysis to assess the effect blood sampling on annual survival of kingbirds by combining the annual survival data described above with whether or not individuals were subjected to blood sample collection. The results of this analysis indicated that blood sampling had no effect on annual survival rates of kingbirds. Whether or not this is the case for other species remains to be seen. However, my results support the assumption that when done correctly, blood sampling has little to no long-term negative effects on birds. Comparative analyses of many bird species show that testosterone secretion exhibits fairly predictable patterns among breeding birds of different mating systems. Monogamous species reach a peak during mate attraction and the period of female fertility which is then followed by a sharp decline when young are in the nest. By contrast, males of polygynous species tend to maintain higher levels of testosterone throughout the breeding season to, presumably, maximize opportunities for acquiring additional mates. Kingbirds are socially monogamous but cryptically polygamous. However, because of high rates of extra-pair paternity, variation in reproductive success among males is much higher than what is expected for a monogamous species, and, instead, is similar to what has been reported for polygynous species. Therefore from 2005 to 2009 I measured testosterone concentrations from the blood samples collected from male kingbirds to determine the breeding season profile of testosterone secretion in kingbirds and to understand the factors that influence testosterone variation among individuals. Contrary to expected for a monogamous species, the testosterone profile of kingbirds did not exhibit the brief peak in testosterone followed by a precipitous decline. Testosterone peaked early in the season, but declined very slowly as the nest cycle progressed. I attributed this gradual decline in testosterone to the cryptically polygynous nature of the kingbird extra-pair mating system. I also found substantial variation in testosterone concentration among male kingbirds and was able to identify several factors contributing to this variation. As expected, testosterone declined as the breeding season progressed (independent of stage in nest cycle) and nest density increased, while increases in testosterone were correlated with the number of fertile females within the population. This suggests that male kingbirds were capable of modulating testosterone concentrations to both cope with an increase in conspecific density, but also to ready themselves for times when extra-pair copulations were more likely. Close

• 74. [Article] THE ROLE OF CHROMODOMAIN PROTEIN 1 (CDP-1) AT NEUROSPORA CRASSA HETEROCHROMATIN

  36 pages. A thesis presented to the Department of Biology and the Clark Honors College of the University of Oregon in partial fulfillment of the requirements for degree of Bachelor of Science, Spring 2...

  Citation × Citation Citation Abstract Copy Title: THE ROLE OF CHROMODOMAIN PROTEIN 1 (CDP-1) AT NEUROSPORA CRASSA HETEROCHROMATIN Author: Kim, Carissa Year: 2016 36 pages. A thesis presented to the Department of Biology and the Clark Honors College of the University of Oregon in partial fulfillment of the requirements for degree of Bachelor of Science, Spring 2016. Title: THE ROLE OF CHROMODOMAIN PROTEIN 1 (CDP-1) AT NEUROSPORA CRASSA HETEROCHROMATIN Author: Kim, Carissa Year: 2016 36 pages. A thesis presented to the Department of Biology and the Clark Honors College of the University of Oregon in partial fulfillment of the requirements for degree of Bachelor of Science, Spring 2016. Close