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• 1. [Article] River Influences on Shelf Ecosystems: Introduction and Synthesis

  River Influences on Shelf Ecosystems (RISE) is the first comprehensive interdisciplinary study of the rates and dynamics governing the mixing of river and coastal waters in an eastern boundary current ...

  Citation × Citation Citation Abstract Copy Title: River Influences on Shelf Ecosystems: Introduction and Synthesis Author: Hickey, Barbara M., Kudela, Raphael M., Nash, Jonathan, Bruland, Kenneth W., Peterson, William T., MacCready, P., Lessard, Evelyn J., Jay, David A., Banas, Neil S., Baptista, Antonio M., Dever, Edward P., Kosro, P. Michael, Kilcher, Levi, Horner-Devine, Alexander R., Zaron, Edward D., McCabe, Ryan M., Peterson, Jay O., Orton, Philip M., Pan, Jiayi Year: 2010 River Influences on Shelf Ecosystems (RISE) is the first comprehensive interdisciplinary study of the rates and dynamics governing the mixing of river and coastal waters in an eastern boundary current system, as well as the effects of the resultant plume on phytoplankton standing stocks, growth and grazing rates, and community structure. The RISE Special Volume presents results deduced from four field studies and two different numerical model applications, including an ecosystem model, on the buoyant plume originating from the Columbia River. This introductory paper provides background information on variability during RISE field efforts as well as a synthesis of results, with particular attention to the questions and hypotheses that motivated this research. RISE studies have shown that the maximum mixing of Columbia River and ocean water occurs primarily near plume liftoff inside the estuary and in the near field of the plume. Most plume nitrate originates from upwelled shelf water, and plume phytoplankton species are typically the same as those found in the adjacent coastal ocean. River-supplied nitrate can help maintain the ecosystem during periods of delayed upwelling. The plume inhibits iron limitation, but nitrate limitation is observed in aging plumes. The plume also has significant effects on rates of primary productivity and growth (higher in new plume water) and microzooplankton grazing (lower in the plume near field and north of the river mouth); macrozooplankton concentration (enhanced at plume fronts); offshelf chlorophyll export; as well as the development of a chlorophyll ?shadow zone? off northern Oregon. Title: River Influences on Shelf Ecosystems: Introduction and Synthesis Author: Hickey, Barbara M., Kudela, Raphael M., Nash, Jonathan, Bruland, Kenneth W., Peterson, William T., MacCready, P., Lessard, Evelyn J., Jay, David A., Banas, Neil S., Baptista, Antonio M., Dever, Edward P., Kosro, P. Michael, Kilcher, Levi, Horner-Devine, Alexander R., Zaron, Edward D., McCabe, Ryan M., Peterson, Jay O., Orton, Philip M., Pan, Jiayi Year: 2010 River Influences on Shelf Ecosystems (RISE) is the first comprehensive interdisciplinary study of the rates and dynamics governing the mixing of river and coastal waters in an eastern boundary current system, as well as the effects of the resultant plume on phytoplankton standing stocks, growth and grazing rates, and community structure. The RISE Special Volume presents results deduced from four field studies and two different numerical model applications, including an ecosystem model, on the buoyant plume originating from the Columbia River. This introductory paper provides background information on variability during RISE field efforts as well as a synthesis of results, with particular attention to the questions and hypotheses that motivated this research. RISE studies have shown that the maximum mixing of Columbia River and ocean water occurs primarily near plume liftoff inside the estuary and in the near field of the plume. Most plume nitrate originates from upwelled shelf water, and plume phytoplankton species are typically the same as those found in the adjacent coastal ocean. River-supplied nitrate can help maintain the ecosystem during periods of delayed upwelling. The plume inhibits iron limitation, but nitrate limitation is observed in aging plumes. The plume also has significant effects on rates of primary productivity and growth (higher in new plume water) and microzooplankton grazing (lower in the plume near field and north of the river mouth); macrozooplankton concentration (enhanced at plume fronts); offshelf chlorophyll export; as well as the development of a chlorophyll ?shadow zone? off northern Oregon. Close

• 2. [Article] Seasonal Variability and Estuary-Shelf Interactions in Circulation Dynamics of a River-dominated Estuary

  The long-term response of circulation processes to external forcing has been quantified for the Columbia River estuary using in situ data from an existing coastal observatory. Circulation patterns were ...

  Citation × Citation Citation Abstract Copy Title: Seasonal Variability and Estuary-Shelf Interactions in Circulation Dynamics of a River-dominated Estuary Author: Chawla, Arun, Jay, David A., Baptista, Antonio M., Wilkin, Michael, Seaton, Charles Year: 2008 The long-term response of circulation processes to external forcing has been quantified for the Columbia River estuary using in situ data from an existing coastal observatory. Circulation patterns were determined from four Acoustic Doppler Profilers (ADP) and several conductivity-temperature sensors placed in the two main channels. Because of the very strong river discharge, baroclinic processes play a crucial role in the circulation dynamics, and the interaction of the tidal and subtidal baroclinic pressure gradients plays a major role in structuring the velocity field. The input of river flow and the resulting low-frequency flow dynamics in the two channels are quite distinct. Current and salinity data were analyzed on two time scales?subtidal (or residual) and tidal (both diurnal and semidiurnal components). The residual currents in both channels usually showed a classical two-layer baroclinic circulation system with inflow at the bottom and outflow near the surface. However, this two-layer system is transient and breaks down under strong discharge and tidal conditions because of enhanced vertical mixing. Influence of shelf winds on estuarine processes was also observed via the interactions with upwelling and downwelling processes and coastal plume transport. The transient nature of residual inflow affects the long-term transport characteristics of the estuary. Effects of vertical mixing could also be seen at the tidal time scale. Tidal velocities were separated into their diurnal and semidiurnal components using continuous wavelet transforms to account for the nonstationary nature of velocity amplitudes. The vertical structure of velocity amplitudes were considerably altered by baroclinic gradients. This was particularly true for the diurnal components, where tidal asymmetry led to stronger tidal velocities near the bottom. Title: Seasonal Variability and Estuary-Shelf Interactions in Circulation Dynamics of a River-dominated Estuary Author: Chawla, Arun, Jay, David A., Baptista, Antonio M., Wilkin, Michael, Seaton, Charles Year: 2008 The long-term response of circulation processes to external forcing has been quantified for the Columbia River estuary using in situ data from an existing coastal observatory. Circulation patterns were determined from four Acoustic Doppler Profilers (ADP) and several conductivity-temperature sensors placed in the two main channels. Because of the very strong river discharge, baroclinic processes play a crucial role in the circulation dynamics, and the interaction of the tidal and subtidal baroclinic pressure gradients plays a major role in structuring the velocity field. The input of river flow and the resulting low-frequency flow dynamics in the two channels are quite distinct. Current and salinity data were analyzed on two time scales?subtidal (or residual) and tidal (both diurnal and semidiurnal components). The residual currents in both channels usually showed a classical two-layer baroclinic circulation system with inflow at the bottom and outflow near the surface. However, this two-layer system is transient and breaks down under strong discharge and tidal conditions because of enhanced vertical mixing. Influence of shelf winds on estuarine processes was also observed via the interactions with upwelling and downwelling processes and coastal plume transport. The transient nature of residual inflow affects the long-term transport characteristics of the estuary. Effects of vertical mixing could also be seen at the tidal time scale. Tidal velocities were separated into their diurnal and semidiurnal components using continuous wavelet transforms to account for the nonstationary nature of velocity amplitudes. The vertical structure of velocity amplitudes were considerably altered by baroclinic gradients. This was particularly true for the diurnal components, where tidal asymmetry led to stronger tidal velocities near the bottom. Close

• 3. [Article] Estimation of Historic Flows and Sediment Loads to San Francisco Bay, 1849 – 2011

  River flow and sediment transport in estuaries influence morphological development over decadal and century time scales, but hydrological and sedimentological records are typically too short to adequately ...

  Citation × Citation Citation Abstract Copy Title: Estimation of Historic Flows and Sediment Loads to San Francisco Bay, 1849 – 2011 Author: Moftakhari Rostamkhani, Hamed, Jay, David A., Talke, Stefan A., Schoellhamer, David H. Year: 2015 River flow and sediment transport in estuaries influence morphological development over decadal and century time scales, but hydrological and sedimentological records are typically too short to adequately characterize long-term trends. In this study, we recover archival records and apply a rating curve approach to develop the first instrumental estimates of daily delta inflow and sediment loads to San Francisco Bay (1849 – 1929). The total sediment load is constrained using sedimentation/erosion estimated from bathymetric survey data to produce continuous daily sediment transport estimates from 1849 to 1955, the time period prior to sediment load measurements. We estimate that ~55% (45 – 75%) of the ~1500±400 million tons (Mt) of sediment delivered to the estuary between 1849 and 2011 was the result of anthropogenic alteration in the watershed that increased sediment supply. Also, the seasonal timing of sediment flux events has shifted because significant spring-melt floods have decreased, causing estimated springtime transport (April 1st to June 30th) to decrease from ~25% to ~15% of the annual total. By contrast, wintertime sediment loads (December 1st to March 31st) have increased from ~70% to ~80%. A ~35% reduction of annual flow since the 19th century along with decreased sediment supply has resulted in a ~50% reduction in annual sediment delivery. The methods developed in this study can be applied to other systems for which unanalyzed historic data exist. Title: Estimation of Historic Flows and Sediment Loads to San Francisco Bay, 1849 – 2011 Author: Moftakhari Rostamkhani, Hamed, Jay, David A., Talke, Stefan A., Schoellhamer, David H. Year: 2015 River flow and sediment transport in estuaries influence morphological development over decadal and century time scales, but hydrological and sedimentological records are typically too short to adequately characterize long-term trends. In this study, we recover archival records and apply a rating curve approach to develop the first instrumental estimates of daily delta inflow and sediment loads to San Francisco Bay (1849 – 1929). The total sediment load is constrained using sedimentation/erosion estimated from bathymetric survey data to produce continuous daily sediment transport estimates from 1849 to 1955, the time period prior to sediment load measurements. We estimate that ~55% (45 – 75%) of the ~1500±400 million tons (Mt) of sediment delivered to the estuary between 1849 and 2011 was the result of anthropogenic alteration in the watershed that increased sediment supply. Also, the seasonal timing of sediment flux events has shifted because significant spring-melt floods have decreased, causing estimated springtime transport (April 1st to June 30th) to decrease from ~25% to ~15% of the annual total. By contrast, wintertime sediment loads (December 1st to March 31st) have increased from ~70% to ~80%. A ~35% reduction of annual flow since the 19th century along with decreased sediment supply has resulted in a ~50% reduction in annual sediment delivery. The methods developed in this study can be applied to other systems for which unanalyzed historic data exist. Close

• 4. [Article] Maintaining Safe, Efficient and Sustainable Intermodal Transport Through the Port of Portland

  About $15 billion of freight passes annually through the Lower Columbia River (LCR) navigation channel to reach Portland and Vancouver, where most of it connects with land transport. This commerce plays ...

  Citation × Citation Citation Abstract Copy Title: Maintaining Safe, Efficient and Sustainable Intermodal Transport Through the Port of Portland Author: Jay, David A., Pan, Jiayi Year: 2011 About $15 billion of freight passes annually through the Lower Columbia River (LCR) navigation channel to reach Portland and Vancouver, where most of it connects with land transport. This commerce plays a vital role in sustaining the regional economy and connecting Oregon to the global economy. The timely connection of truck and rail transport with vessels is vital, especially for export traffic. This link is susceptible to disruption if water depths in the navigation channel are shallower than expected, leading to delays and/or draft limitations. Moreover, ship drafts have increased in recent decades, 25% of the vessels calling in the river sail with a draft close to the channel depth at low water, and these carry roughly 70% of the cargo. A large vessel may have as little as 0.6 m bed clearance when it passes through a low-tide point in the river, which each vessel in transit must do. Thus, prediction and real-time communication of water level to vessels is vital to safety as well as efficiency. This has been implemented through the LOADMAX system, consisting of telemetered water-level gauges and a forecast model. Moreover, the dilemma has been made more critical by changes in the river – low water levels in the river channel between Wauna and Vancouver have decreased 0.3-1.2 m since 1940. The rate of decrease depends on location and riverflow, but appears to have accelerated in the last decade. The reasons for this decrease are not understood. For perspective, an ongoing 0.9 m channel deepening will cost about $150 million when completed, so unintended decreases in water depths are expensive as well as potentially dangerous. Lower water levels in the river also increase carbon emissions, because smaller loads mean more land and vessel transport trips. Further, navigation and salmon habitat restoration are closely connected. Dredging is used to maintain the channel, and habitat restoration is an integral part of the channel deepening. New dredging strategies are needed to maintain the newly deepened channel, but dredging that removes material permanently from the river may, further lower water levels, limiting possibilities for habitat restoration and reducing bed clearance for large ships. These problems will be exacerbated by future decreases in summer river flows due to climate change. Title: Maintaining Safe, Efficient and Sustainable Intermodal Transport Through the Port of Portland Author: Jay, David A., Pan, Jiayi Year: 2011 About $15 billion of freight passes annually through the Lower Columbia River (LCR) navigation channel to reach Portland and Vancouver, where most of it connects with land transport. This commerce plays a vital role in sustaining the regional economy and connecting Oregon to the global economy. The timely connection of truck and rail transport with vessels is vital, especially for export traffic. This link is susceptible to disruption if water depths in the navigation channel are shallower than expected, leading to delays and/or draft limitations. Moreover, ship drafts have increased in recent decades, 25% of the vessels calling in the river sail with a draft close to the channel depth at low water, and these carry roughly 70% of the cargo. A large vessel may have as little as 0.6 m bed clearance when it passes through a low-tide point in the river, which each vessel in transit must do. Thus, prediction and real-time communication of water level to vessels is vital to safety as well as efficiency. This has been implemented through the LOADMAX system, consisting of telemetered water-level gauges and a forecast model. Moreover, the dilemma has been made more critical by changes in the river – low water levels in the river channel between Wauna and Vancouver have decreased 0.3-1.2 m since 1940. The rate of decrease depends on location and riverflow, but appears to have accelerated in the last decade. The reasons for this decrease are not understood. For perspective, an ongoing 0.9 m channel deepening will cost about $150 million when completed, so unintended decreases in water depths are expensive as well as potentially dangerous. Lower water levels in the river also increase carbon emissions, because smaller loads mean more land and vessel transport trips. Further, navigation and salmon habitat restoration are closely connected. Dredging is used to maintain the channel, and habitat restoration is an integral part of the channel deepening. New dredging strategies are needed to maintain the newly deepened channel, but dredging that removes material permanently from the river may, further lower water levels, limiting possibilities for habitat restoration and reducing bed clearance for large ships. These problems will be exacerbated by future decreases in summer river flows due to climate change. Close