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• 91. [Article] TMDLS: Statistical Correlations or Mechanistic Modeling?

  In developing TMDL waste-load allocations for the Snake River-Reservoir system in Western Idaho and Eastern Oregon, determinations of the assimilative capacity of the system and the impact of pollutant ...

  Citation × Citation Citation Abstract Copy Title: TMDLS: Statistical Correlations or Mechanistic Modeling? Author: Wells, Scott A., Cole, Thomas M. Year: 2002 In developing TMDL waste-load allocations for the Snake River-Reservoir system in Western Idaho and Eastern Oregon, determinations of the assimilative capacity of the system and the impact of pollutant reduction strategies has been performed using both a statistical-correlation approach and a mechanistic modeling approach. The system included the Lower Snake River, Brownlee Reservoir, Oxbow Reservoir, and Hells Canyon Reservoir with the focus was on Brownlee Reservoir. The statistical approach used on Brownlee Reservoir divided the system into riverine and lacustrine zones. Field data were then averaged over season and location to provide statistical correlations, such as between total phosphorus (TP) and chlorophyll a (chl a), between an anoxic factor (AF) and TP, and between a hypoxic factor (HP) and TP. The anoxic factor is defined as the number of days when dissolved oxygen was less than 2 mg/l and the hypoxic factor was defined as the number of days when dissolved oxygen was less than 6.5 mg/l. The mechanistic approach used a two-dimensional, unsteady, hydrodynamic and water quality model called CE-QUAL-W2. The model was calibrated to field data over a three year period for 1992 (a low flow year), 1995 (an average flow year), and 1997 (a high flow year). Some of the important questions that the TMDL process was to answer included the following. What level of TP is necessary in the river coming into Brownlee Reservoir to reduce the number of days of hypoxia in the reservoir? What are the causes of low-dissolved oxygen in Brownlee Reservoir and what management strategies can be implemented to improve water quality? This paper examines the strengths and weaknesses of answering management questions using these two approaches. Recommendations are suggested for answering assimilative capacity questions that arise in TMDL studies. Title: TMDLS: Statistical Correlations or Mechanistic Modeling? Author: Wells, Scott A., Cole, Thomas M. Year: 2002 In developing TMDL waste-load allocations for the Snake River-Reservoir system in Western Idaho and Eastern Oregon, determinations of the assimilative capacity of the system and the impact of pollutant reduction strategies has been performed using both a statistical-correlation approach and a mechanistic modeling approach. The system included the Lower Snake River, Brownlee Reservoir, Oxbow Reservoir, and Hells Canyon Reservoir with the focus was on Brownlee Reservoir. The statistical approach used on Brownlee Reservoir divided the system into riverine and lacustrine zones. Field data were then averaged over season and location to provide statistical correlations, such as between total phosphorus (TP) and chlorophyll a (chl a), between an anoxic factor (AF) and TP, and between a hypoxic factor (HP) and TP. The anoxic factor is defined as the number of days when dissolved oxygen was less than 2 mg/l and the hypoxic factor was defined as the number of days when dissolved oxygen was less than 6.5 mg/l. The mechanistic approach used a two-dimensional, unsteady, hydrodynamic and water quality model called CE-QUAL-W2. The model was calibrated to field data over a three year period for 1992 (a low flow year), 1995 (an average flow year), and 1997 (a high flow year). Some of the important questions that the TMDL process was to answer included the following. What level of TP is necessary in the river coming into Brownlee Reservoir to reduce the number of days of hypoxia in the reservoir? What are the causes of low-dissolved oxygen in Brownlee Reservoir and what management strategies can be implemented to improve water quality? This paper examines the strengths and weaknesses of answering management questions using these two approaches. Recommendations are suggested for answering assimilative capacity questions that arise in TMDL studies. Close

• 92. [Article] Effects of Spatially Distributed Stream Power on Check Dam Function in Small Upland Watersheds: A Case Study of the Upper Laja Watershed, Guanajuato, Mexico

  Watershed restoration comes in a variety of forms depending on which set of problems are sought to be remedied. Severe soil erosion, in the form of gullying and/or headcutting, can be mitigated through ...

  Citation × Citation Citation Abstract Copy Title: Effects of Spatially Distributed Stream Power on Check Dam Function in Small Upland Watersheds: A Case Study of the Upper Laja Watershed, Guanajuato, Mexico Author: Herzfeld, Zachary Andrew Year: 2017 Watershed restoration comes in a variety of forms depending on which set of problems are sought to be remedied. Severe soil erosion, in the form of gullying and/or headcutting, can be mitigated through constructing check dams in well-selected locations. This practice has been used throughout the upland subwatersheds within the Upper Laja River watershed in Guanajuato, Mexico. The present study employed Wolman pebble counts to systematically assess the effectiveness of 21 check dams located near the city of San Miguel de Allende. Particle size distributions taken directly downstream and upstream of each check dam were differentiated, aggregated and compared--with the difference between median particle size of downstream and upstream distributions defined as DsD50-UsD50. Several subwatershed attributes were calculated in a GIS for comparison to DsD50-UsD50 values. Results indicate that, on aggregate, the check dams studied were moderately successful at retaining sediment that becomes entrained in concentrated flow (DsD50-UsD50 = 15.4 mm; p < 0.001). Individually, 18 of the 21 check dams surveyed had statistically significant differences between DsD50 and UsD50 (p < 0.05). The subwatershed variables of local channel slope (r = 0.55), mean subwatershed slope (r = 0.46), subwatershed area (r = 0.59), distance from channel head (r = 0.54), percent canopy cover (r = 0.46), Qmed (r = 0.46), total stream power (r = 0.58), and change in total stream power (r = -0.45) were found to be statistically significant when correlated with DsD50-UsD50 values (p < 0.05). Change in total stream power was used to classify stream reaches as either erosion or deposition-dominated. When compared, the DsD50-UsD50 values from check dams located in erosion and deposition-dominated reaches are statistically different (p < 0.05); higher performing check dams were predominantly found in deposition-dominated reaches. The results of this study suggest that spatially distributed stream power can be used as a variable for making decisions about future check dam locations. In particular, check dams are more likely to be effective if they are located within deposition-dominated areas (negative change in total stream power) and in areas of decreasing change in total stream power. In general, this study's findings also support locating check dams in second order streams. Title: Effects of Spatially Distributed Stream Power on Check Dam Function in Small Upland Watersheds: A Case Study of the Upper Laja Watershed, Guanajuato, Mexico Author: Herzfeld, Zachary Andrew Year: 2017 Watershed restoration comes in a variety of forms depending on which set of problems are sought to be remedied. Severe soil erosion, in the form of gullying and/or headcutting, can be mitigated through constructing check dams in well-selected locations. This practice has been used throughout the upland subwatersheds within the Upper Laja River watershed in Guanajuato, Mexico. The present study employed Wolman pebble counts to systematically assess the effectiveness of 21 check dams located near the city of San Miguel de Allende. Particle size distributions taken directly downstream and upstream of each check dam were differentiated, aggregated and compared--with the difference between median particle size of downstream and upstream distributions defined as DsD50-UsD50. Several subwatershed attributes were calculated in a GIS for comparison to DsD50-UsD50 values. Results indicate that, on aggregate, the check dams studied were moderately successful at retaining sediment that becomes entrained in concentrated flow (DsD50-UsD50 = 15.4 mm; p < 0.001). Individually, 18 of the 21 check dams surveyed had statistically significant differences between DsD50 and UsD50 (p < 0.05). The subwatershed variables of local channel slope (r = 0.55), mean subwatershed slope (r = 0.46), subwatershed area (r = 0.59), distance from channel head (r = 0.54), percent canopy cover (r = 0.46), Qmed (r = 0.46), total stream power (r = 0.58), and change in total stream power (r = -0.45) were found to be statistically significant when correlated with DsD50-UsD50 values (p < 0.05). Change in total stream power was used to classify stream reaches as either erosion or deposition-dominated. When compared, the DsD50-UsD50 values from check dams located in erosion and deposition-dominated reaches are statistically different (p < 0.05); higher performing check dams were predominantly found in deposition-dominated reaches. The results of this study suggest that spatially distributed stream power can be used as a variable for making decisions about future check dam locations. In particular, check dams are more likely to be effective if they are located within deposition-dominated areas (negative change in total stream power) and in areas of decreasing change in total stream power. In general, this study's findings also support locating check dams in second order streams. Close

• 93. [Article] Riparian Shade Assessment and Restoration Priorities Analysis in the Damascus Urban Growth Boundary Expansion Area

  An important component of progressive urban planning is the protection and restoration of riparian environments, particularly in the Pacific Northwest where increasing stream temperatures threaten the ...

  Citation × Citation Citation Abstract Copy Title: Riparian Shade Assessment and Restoration Priorities Analysis in the Damascus Urban Growth Boundary Expansion Area Author: Leferink, Robin K. Year: 2007 An important component of progressive urban planning is the protection and restoration of riparian environments, particularly in the Pacific Northwest where increasing stream temperatures threaten the survival of endangered salmonids and other cold-water biota. Restoration projects are often led by watershed councils or other grassroots organizations with limited resources, and it is essential that these groups have an efficient and effective approach to determine priority areas where their efforts can be directed to achieve the greatest ecological benefit. The purpose of this project was to quantify existing riparian shade levels and identify priority reaches for shade restoration on Clackamas River basin streams in the Damascus area expansion of the Portland, Oregon urban growth boundary. Additionally, potential errors in the Metro Regional Land Information System (RLIS) Lite geographic information system (GIS) coverage of the area’s streams were identified and corrected where possible. Riparian shade levels were quantified through interpretation of digital aerial photographs using GIS. At the start of the shade analysis six 50 m reaches in the study area were surveyed using a spherical densiometer to calibrate the aerial photo interpretation. Following the analysis, the method accuracy was assessed by comparing GIS-derived shade classes with field data from 25 sites in the study area that were surveyed in 2003. Stream reaches were identified and prioritized for restoration based on riparian shade level, presence or absence of late-summer flow (as determined through field investigations), and GISevaluated stream aspect (i.e. the direction of stream flow). Generally, the headwaters were found to have less shade than the downstream areas and many of the headwater reaches were identified as the highest restoration priority. Of the 60.5 km of streams assessed in the riparian shade analysis, 24.7 km were identified as potential restoration reaches based on shade levels and late-summer flow conditions. These 24.7 km were further broken into five priority ranks, with 4.1 km of stream reaches assigned to the highest shade restoration priority class. Potential errors in the GIS stream coverage were identified in conjunction with the riparian shade assessment. Where possible, these errors were corrected based on the aerial photographs. Although in many cases access was limited, a total of 18 site visits were made to verify stream locations. The results of this watershed-scale restoration priorities analysis are being used by Clackamas River Basin Council and others to guide restoration planning in the new urban area. While focusing on the high priority stream reaches identified, restoration managers will also need to consider reach-scale factors including land use plans, riparian continuity, parcel size, and landowner cooperation in the final selection of restoration sites. The GIS stream layer corrections were provided to Metro and to the City of Damascus for use in their 2007 natural resource inventory. Title: Riparian Shade Assessment and Restoration Priorities Analysis in the Damascus Urban Growth Boundary Expansion Area Author: Leferink, Robin K. Year: 2007 An important component of progressive urban planning is the protection and restoration of riparian environments, particularly in the Pacific Northwest where increasing stream temperatures threaten the survival of endangered salmonids and other cold-water biota. Restoration projects are often led by watershed councils or other grassroots organizations with limited resources, and it is essential that these groups have an efficient and effective approach to determine priority areas where their efforts can be directed to achieve the greatest ecological benefit. The purpose of this project was to quantify existing riparian shade levels and identify priority reaches for shade restoration on Clackamas River basin streams in the Damascus area expansion of the Portland, Oregon urban growth boundary. Additionally, potential errors in the Metro Regional Land Information System (RLIS) Lite geographic information system (GIS) coverage of the area’s streams were identified and corrected where possible. Riparian shade levels were quantified through interpretation of digital aerial photographs using GIS. At the start of the shade analysis six 50 m reaches in the study area were surveyed using a spherical densiometer to calibrate the aerial photo interpretation. Following the analysis, the method accuracy was assessed by comparing GIS-derived shade classes with field data from 25 sites in the study area that were surveyed in 2003. Stream reaches were identified and prioritized for restoration based on riparian shade level, presence or absence of late-summer flow (as determined through field investigations), and GISevaluated stream aspect (i.e. the direction of stream flow). Generally, the headwaters were found to have less shade than the downstream areas and many of the headwater reaches were identified as the highest restoration priority. Of the 60.5 km of streams assessed in the riparian shade analysis, 24.7 km were identified as potential restoration reaches based on shade levels and late-summer flow conditions. These 24.7 km were further broken into five priority ranks, with 4.1 km of stream reaches assigned to the highest shade restoration priority class. Potential errors in the GIS stream coverage were identified in conjunction with the riparian shade assessment. Where possible, these errors were corrected based on the aerial photographs. Although in many cases access was limited, a total of 18 site visits were made to verify stream locations. The results of this watershed-scale restoration priorities analysis are being used by Clackamas River Basin Council and others to guide restoration planning in the new urban area. While focusing on the high priority stream reaches identified, restoration managers will also need to consider reach-scale factors including land use plans, riparian continuity, parcel size, and landowner cooperation in the final selection of restoration sites. The GIS stream layer corrections were provided to Metro and to the City of Damascus for use in their 2007 natural resource inventory. Close

• 94. [Article] Using Archaeological Fish Remains to Determine the Native Status of Anadromous Salmonids in the Upper Klamath Basin (Oregon, USA) Through mtDNA and Geochemical Analysis

  Within the Upper Klamath Basin, Oregon, the native status of anadromous salmonids (Oncorhynchus spp.) has been a long standing question. Ongoing efforts to establish if these fish were native to the region ...

  Citation × Citation Citation Abstract Copy Title: Using Archaeological Fish Remains to Determine the Native Status of Anadromous Salmonids in the Upper Klamath Basin (Oregon, USA) Through mtDNA and Geochemical Analysis Author: Stevenson, Alexander E. Year: 2011 Within the Upper Klamath Basin, Oregon, the native status of anadromous salmonids (Oncorhynchus spp.) has been a long standing question. Ongoing efforts to establish if these fish were native to the region prior to the construction of the Copco I Dam on the Klamath River (c.1917) have relied on sparse, contradictory and sometimes unreliable historic documentation and informant testimony. Current restoration projects with very high financial and social costs necessitate accurate and reliable data on salmonid species which once called the region home. Often, archaeolofaunal remains present a novel way to determine species present in an area prior to major habitat losses. This project analyzed fish remains from five previously excavated archaeological sites within the Upper Klamath Basin to determine which salmonid species were present prior to dam construction. A total of 5,859 fish remains were identified to at least taxonomic order using morphological distinctions. Site collections were dominated by those of catostomids (suckers) and cyprinids (minnows). Archaeological deposits at these sites dated as far back as approximately 7,500 BP but were primarily from the last 2,000 years. Only eighty-one salmonid remains were observed within the sites included in this project. The low frequency of salmonid remains in these sites may be the result of cultural and/or natural processes such as density mediated attrition and archaeological sampling. Of these 81 specimens, 38 were subjected to mtDNA analysis for species identification. Seven specimens did not yield DNA sufficient for species identification, six specimens were identified as O. tshawytscha (Chinook) and the remaining 25 specimens were identified as O. mykiss (steelhead or redband trout). Geochemical analysis was used to determine the life history of the fish represented by the remains within these collections. Strontium Calcium (Sr:Ca) ratios were measured on twenty-eight specimens. Three specimens were determined to be from freshwater resident fish and 25 were determined to be from anadromous fish. The specimens which were genetically identified as O. tshawytscha were all determined to be anadromous. Of the 18 specimens which were identified as O. mykiss and were subjected to geochemical analysis two were from freshwater resident fish and sixteen were from anadromous fish. Four samples were not characterized genetically but were subjected to geochemical analysis; three of these were determined to be from anadromous fish and one from a freshwater resident fish. Thus, the remains of anadromous O. mykiss and O. tshawytscha were identified in archaeological deposits predating construction of the Copco I dam in the Upper Klamath Basin While the genetic and geochemical analyses confirm the presence of skeletal remains from anadromous salmonids in the Upper Klamath Basin archaeological sites prior to dam construction these remains may, represent fish caught elsewhere and traded in. Two hypotheses address the introduction of these fish remains into pre-dam archaeological deposits, either they were traded/transported in from elsewhere (Trade/Transport Hypothesis) or they were caught locally (Local Catch Hypothesis). Expectations linked to each of these hypotheses were generated using ethnographic information from across the Pacific Northwest, including modern testimony from the Klamath Basin. Fish heads were often removed soon after capture in order to reduce spoilage of the rest of the fish. Thus, assemblages with many head parts are probably the result of local catch while those without head parts are probably the result of trade and/or transport. Two approaches were used to estimate the extent to which fish heads were deposited in sites. Basic proportions of cranial to post cranial remains from two sites provided a varied picture and did not readily support either the Local Catch or Trade/Transport hypotheses. Evaluation using scaled proportions based on frequency of skeletal elements within the body (Minimum Animal Units) show that four of the five assemblages were dominated by cranial remains and therefore suggest these fish were locally caught. Small samples sizes make it difficult to rigorously evaluate the hypotheses, though the dominance of cranial remains suggests salmonids were taken locally. Together these data indicate that anadromous O. tshawytscha and O. mykiss were taken from waters within the Upper Klamath Basin prior to the construction of Copco I. This study has provided accurate and reliable data, using a novel approach, on which restoration efforts in the region can rely for proper species reintroduction and habitat restoration efforts. Title: Using Archaeological Fish Remains to Determine the Native Status of Anadromous Salmonids in the Upper Klamath Basin (Oregon, USA) Through mtDNA and Geochemical Analysis Author: Stevenson, Alexander E. Year: 2011 Within the Upper Klamath Basin, Oregon, the native status of anadromous salmonids (Oncorhynchus spp.) has been a long standing question. Ongoing efforts to establish if these fish were native to the region prior to the construction of the Copco I Dam on the Klamath River (c.1917) have relied on sparse, contradictory and sometimes unreliable historic documentation and informant testimony. Current restoration projects with very high financial and social costs necessitate accurate and reliable data on salmonid species which once called the region home. Often, archaeolofaunal remains present a novel way to determine species present in an area prior to major habitat losses. This project analyzed fish remains from five previously excavated archaeological sites within the Upper Klamath Basin to determine which salmonid species were present prior to dam construction. A total of 5,859 fish remains were identified to at least taxonomic order using morphological distinctions. Site collections were dominated by those of catostomids (suckers) and cyprinids (minnows). Archaeological deposits at these sites dated as far back as approximately 7,500 BP but were primarily from the last 2,000 years. Only eighty-one salmonid remains were observed within the sites included in this project. The low frequency of salmonid remains in these sites may be the result of cultural and/or natural processes such as density mediated attrition and archaeological sampling. Of these 81 specimens, 38 were subjected to mtDNA analysis for species identification. Seven specimens did not yield DNA sufficient for species identification, six specimens were identified as O. tshawytscha (Chinook) and the remaining 25 specimens were identified as O. mykiss (steelhead or redband trout). Geochemical analysis was used to determine the life history of the fish represented by the remains within these collections. Strontium Calcium (Sr:Ca) ratios were measured on twenty-eight specimens. Three specimens were determined to be from freshwater resident fish and 25 were determined to be from anadromous fish. The specimens which were genetically identified as O. tshawytscha were all determined to be anadromous. Of the 18 specimens which were identified as O. mykiss and were subjected to geochemical analysis two were from freshwater resident fish and sixteen were from anadromous fish. Four samples were not characterized genetically but were subjected to geochemical analysis; three of these were determined to be from anadromous fish and one from a freshwater resident fish. Thus, the remains of anadromous O. mykiss and O. tshawytscha were identified in archaeological deposits predating construction of the Copco I dam in the Upper Klamath Basin While the genetic and geochemical analyses confirm the presence of skeletal remains from anadromous salmonids in the Upper Klamath Basin archaeological sites prior to dam construction these remains may, represent fish caught elsewhere and traded in. Two hypotheses address the introduction of these fish remains into pre-dam archaeological deposits, either they were traded/transported in from elsewhere (Trade/Transport Hypothesis) or they were caught locally (Local Catch Hypothesis). Expectations linked to each of these hypotheses were generated using ethnographic information from across the Pacific Northwest, including modern testimony from the Klamath Basin. Fish heads were often removed soon after capture in order to reduce spoilage of the rest of the fish. Thus, assemblages with many head parts are probably the result of local catch while those without head parts are probably the result of trade and/or transport. Two approaches were used to estimate the extent to which fish heads were deposited in sites. Basic proportions of cranial to post cranial remains from two sites provided a varied picture and did not readily support either the Local Catch or Trade/Transport hypotheses. Evaluation using scaled proportions based on frequency of skeletal elements within the body (Minimum Animal Units) show that four of the five assemblages were dominated by cranial remains and therefore suggest these fish were locally caught. Small samples sizes make it difficult to rigorously evaluate the hypotheses, though the dominance of cranial remains suggests salmonids were taken locally. Together these data indicate that anadromous O. tshawytscha and O. mykiss were taken from waters within the Upper Klamath Basin prior to the construction of Copco I. This study has provided accurate and reliable data, using a novel approach, on which restoration efforts in the region can rely for proper species reintroduction and habitat restoration efforts. Close

• 95. [Article] Automatic Calibration of Water Quality and Hydrodynamic Model (CE-QUAL-W2)

  One of the most important purposes of surface water resource management is to develop predictive models to assist in identifying and evaluating operational and structural measures for improving water quality. ...

  Citation × Citation Citation Abstract Copy Title: Automatic Calibration of Water Quality and Hydrodynamic Model (CE-QUAL-W2) Author: Shojaei, Nasim Year: 2014 One of the most important purposes of surface water resource management is to develop predictive models to assist in identifying and evaluating operational and structural measures for improving water quality. To better understand the effects of external and internal nutrient and organic loading and the effects of reservoir operation, a model is often developed, calibrated, and used for sensitivity and management simulations. The importance of modeling and simulation in the scientific community has drawn interest towards methods for automated calibration. This study addresses using an automatic technique to calibrate the water quality model CE-QUAL-W2 (Cole and Wells, 2013). CE-QUAL-W2 is a two-dimensional (2D) longitudinal/vertical hydrodynamic and water quality model for surface water bodies, modeling eutrophication processes such as temperature-nutrient-algae-dissolved oxygen-organic matter and sediment relationships. The numerical method used for calibration in this study is the particle swarm optimization method developed by Kennedy and Eberhart (1995) and inspired by the paradigm of birds flocking. The objective of this calibration procedure is to choose model parameters and coefficients affecting temperature, chlorophyll a, dissolved oxygen, and nutrients (such as NH4, NO3, and PO4). A case study is presented for the Karkheh Reservoir in Iran with a capacity of more than 5 billion cubic meters that is the largest dam in Iran with both agricultural and drinking water usages. This algorithm is shown to perform very well for determining model parameters for the reservoir water quality and hydrodynamic model. Implications of the use of this procedure for other water quality models are also shown. Title: Automatic Calibration of Water Quality and Hydrodynamic Model (CE-QUAL-W2) Author: Shojaei, Nasim Year: 2014 One of the most important purposes of surface water resource management is to develop predictive models to assist in identifying and evaluating operational and structural measures for improving water quality. To better understand the effects of external and internal nutrient and organic loading and the effects of reservoir operation, a model is often developed, calibrated, and used for sensitivity and management simulations. The importance of modeling and simulation in the scientific community has drawn interest towards methods for automated calibration. This study addresses using an automatic technique to calibrate the water quality model CE-QUAL-W2 (Cole and Wells, 2013). CE-QUAL-W2 is a two-dimensional (2D) longitudinal/vertical hydrodynamic and water quality model for surface water bodies, modeling eutrophication processes such as temperature-nutrient-algae-dissolved oxygen-organic matter and sediment relationships. The numerical method used for calibration in this study is the particle swarm optimization method developed by Kennedy and Eberhart (1995) and inspired by the paradigm of birds flocking. The objective of this calibration procedure is to choose model parameters and coefficients affecting temperature, chlorophyll a, dissolved oxygen, and nutrients (such as NH4, NO3, and PO4). A case study is presented for the Karkheh Reservoir in Iran with a capacity of more than 5 billion cubic meters that is the largest dam in Iran with both agricultural and drinking water usages. This algorithm is shown to perform very well for determining model parameters for the reservoir water quality and hydrodynamic model. Implications of the use of this procedure for other water quality models are also shown. Close

• 96. [Article] Combined Assimilation of Streamflow and Satellite Soil Moisture with the Particle Filter and Geostatistical Modeling

  Assimilation of satellite soil moisture and streamflow data into a distributed hydrologic model has received increasing attention over the past few years. This study provides a detailed analysis of the ...

  Citation × Citation Citation Abstract Copy Title: Combined Assimilation of Streamflow and Satellite Soil Moisture with the Particle Filter and Geostatistical Modeling Author: Yan, Hongxiang, Moradkhani, Hamid Year: 2016 Assimilation of satellite soil moisture and streamflow data into a distributed hydrologic model has received increasing attention over the past few years. This study provides a detailed analysis of the joint and separate assimilation of streamflow and Advanced Scatterometer (ASCAT) surface soil moisture into a distributed Sacramento Soil Moisture Accounting (SAC-SMA) model, with the use of recently developed particle filter-Markov chain Monte Carlo (PF-MCMC) method. Performance is assessed over the Salt River Watershed in Arizona, which is one of the watersheds without anthropogenic effects in Model Parameter Estimation Experiment (MOPEX). A total of five data assimilation (DA) scenarios are designed and the effects of the locations of streamflow gauges and the ASCAT soil moisture on the predictions of soil moisture and streamflow are assessed. In addition, a geostatistical model is introduced to overcome the significantly biased satellite soil moisture and also discontinuity issue. The results indicate that: (1) solely assimilating outlet streamflow can lead to biased soil moisture estimation; (2) when the study area can only be partially covered by the satellite data, the geostatistical approach can estimate the soil moisture for those uncovered grid cells; (3) joint assimilation of streamflow and soil moisture from geostatistical modeling can further improve the surface soil moisture prediction. This study recommends that the geostatistical model is a helpful tool to aid the remote sensing technique and the hydrologic DA study. Title: Combined Assimilation of Streamflow and Satellite Soil Moisture with the Particle Filter and Geostatistical Modeling Author: Yan, Hongxiang, Moradkhani, Hamid Year: 2016 Assimilation of satellite soil moisture and streamflow data into a distributed hydrologic model has received increasing attention over the past few years. This study provides a detailed analysis of the joint and separate assimilation of streamflow and Advanced Scatterometer (ASCAT) surface soil moisture into a distributed Sacramento Soil Moisture Accounting (SAC-SMA) model, with the use of recently developed particle filter-Markov chain Monte Carlo (PF-MCMC) method. Performance is assessed over the Salt River Watershed in Arizona, which is one of the watersheds without anthropogenic effects in Model Parameter Estimation Experiment (MOPEX). A total of five data assimilation (DA) scenarios are designed and the effects of the locations of streamflow gauges and the ASCAT soil moisture on the predictions of soil moisture and streamflow are assessed. In addition, a geostatistical model is introduced to overcome the significantly biased satellite soil moisture and also discontinuity issue. The results indicate that: (1) solely assimilating outlet streamflow can lead to biased soil moisture estimation; (2) when the study area can only be partially covered by the satellite data, the geostatistical approach can estimate the soil moisture for those uncovered grid cells; (3) joint assimilation of streamflow and soil moisture from geostatistical modeling can further improve the surface soil moisture prediction. This study recommends that the geostatistical model is a helpful tool to aid the remote sensing technique and the hydrologic DA study. Close

• 97. [Article] Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters

  Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. ...

  Citation × Citation Citation Abstract Copy Title: Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters Author: Strecker, Angela L., Olden, Julian D. Year: 2014 Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. Title: Fish Species Introductions Provide Novel Insights into the Patterns and Drivers of Phylogenetic Structure in Freshwaters Author: Strecker, Angela L., Olden, Julian D. Year: 2014 Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. Close

• 98. [Article] Integrating Education, Evaluation & Partnerships into Large-Scale Sustainable Stormwater Management Programs

  Integrated stormwater management using green infrastructure shows promise in saving money and mitigating environmental impacts caused by urban development. Equally important are the potential community ...

  Citation × Citation Citation Abstract Copy Title: Integrating Education, Evaluation & Partnerships into Large-Scale Sustainable Stormwater Management Programs Author: Shandas, Vivek, Nelson, Anne, Arendes, Carine Year: 2010 Integrated stormwater management using green infrastructure shows promise in saving money and mitigating environmental impacts caused by urban development. Equally important are the potential community benefits, including better understanding of ecological systems, increased access to urban green spaces, safer and healthier neighborhoods, and informed residents that are equipped to take action to improve watershed health. As a partnership between the City of Portland Environmental Services, Portland State University, and residents of the Tabor to the River (T2R) neighborhood, we conducted a survey to understand the role of civic ecology in green infrastructure projects. The survey results indicate a high interest in certain stormwater strategies and highlights information gaps among T2R residents. Supportive strategies that might improve the civic capacity for residents to steward green infrastructure project include financial incentives and technical assistance, and reducing costs and limiting time commitments. Outreach through classes and hands on training also seem appealing to respondents. These results help to frame an outreach strategy that leverages involvement from multiple partners to advance our understanding of the role civic ecology in large-scale, urban, green infrastructure projects. Title: Integrating Education, Evaluation & Partnerships into Large-Scale Sustainable Stormwater Management Programs Author: Shandas, Vivek, Nelson, Anne, Arendes, Carine Year: 2010 Integrated stormwater management using green infrastructure shows promise in saving money and mitigating environmental impacts caused by urban development. Equally important are the potential community benefits, including better understanding of ecological systems, increased access to urban green spaces, safer and healthier neighborhoods, and informed residents that are equipped to take action to improve watershed health. As a partnership between the City of Portland Environmental Services, Portland State University, and residents of the Tabor to the River (T2R) neighborhood, we conducted a survey to understand the role of civic ecology in green infrastructure projects. The survey results indicate a high interest in certain stormwater strategies and highlights information gaps among T2R residents. Supportive strategies that might improve the civic capacity for residents to steward green infrastructure project include financial incentives and technical assistance, and reducing costs and limiting time commitments. Outreach through classes and hands on training also seem appealing to respondents. These results help to frame an outreach strategy that leverages involvement from multiple partners to advance our understanding of the role civic ecology in large-scale, urban, green infrastructure projects. Close

• 99. [Article] Agricultural Management Decisions Impact Isoprene Emission and Physiology of Arundo donax, an Emerging Bioenergy Crop

  Arundo donax (Giant Reed) is quickly being developed as a rapidly-growing, robust, and highly productive bioenergy crop, with large scale cultivation of this species planned for the Columbia River basin ...

  Citation × Citation Citation Abstract Copy Title: Agricultural Management Decisions Impact Isoprene Emission and Physiology of Arundo donax, an Emerging Bioenergy Crop Author: Maxfield, Jason Charles Year: 2014 Arundo donax (Giant Reed) is quickly being developed as a rapidly-growing, robust, and highly productive bioenergy crop, with large scale cultivation of this species planned for the Columbia River basin of the Pacific Northwest (USA). Despite its potential as a next generation biomass crop, relatively few studies have examined the physiological performance of A. donax under agricultural conditions. Unlike traditional crops, A. donax is known to be a high-emitter of the volatile compound isoprene, which may significantly impact regional air quality, but it has not been widely cultivated in North America and little is known about how this species will perform in the Pacific Northwest. Over two field seasons, we measured isoprene fluxes from A. donax plants in both greenhouse conditions and in an agricultural field setting under a variety of conditions and fertilizer treatments. We also measured several other attributes of A. donax productivity and leaf physiology including chlorophyll content, photosynthesis rate, stomatal conductance, specific leaf mass, water use efficiency and gas exchange. We found that A. donax physiologically performs well under cultivation in the Columbia River basin, but that it also emits isoprene at significantly higher rates than previous reports indicate. We also found that both isoprene emission and leaf physiology were highly affected by agricultural management decisions, including nitrogen and irrigation management. Our findings indicate that crop management strategies can be developed that simultaneously seek to minimize isoprene emission while maximizing biomass production in this newly emerging bioenergy crop. Title: Agricultural Management Decisions Impact Isoprene Emission and Physiology of Arundo donax, an Emerging Bioenergy Crop Author: Maxfield, Jason Charles Year: 2014 Arundo donax (Giant Reed) is quickly being developed as a rapidly-growing, robust, and highly productive bioenergy crop, with large scale cultivation of this species planned for the Columbia River basin of the Pacific Northwest (USA). Despite its potential as a next generation biomass crop, relatively few studies have examined the physiological performance of A. donax under agricultural conditions. Unlike traditional crops, A. donax is known to be a high-emitter of the volatile compound isoprene, which may significantly impact regional air quality, but it has not been widely cultivated in North America and little is known about how this species will perform in the Pacific Northwest. Over two field seasons, we measured isoprene fluxes from A. donax plants in both greenhouse conditions and in an agricultural field setting under a variety of conditions and fertilizer treatments. We also measured several other attributes of A. donax productivity and leaf physiology including chlorophyll content, photosynthesis rate, stomatal conductance, specific leaf mass, water use efficiency and gas exchange. We found that A. donax physiologically performs well under cultivation in the Columbia River basin, but that it also emits isoprene at significantly higher rates than previous reports indicate. We also found that both isoprene emission and leaf physiology were highly affected by agricultural management decisions, including nitrogen and irrigation management. Our findings indicate that crop management strategies can be developed that simultaneously seek to minimize isoprene emission while maximizing biomass production in this newly emerging bioenergy crop. Close

• 100. [Article] CE-QUAL-W2: A Two-dimensional, Laterally Averaged, Hydrodynamic and Water Quality Model, Version 3.1

  CE-QUAL-W2 is a two-dimensional, longitudinal/vertical, hydrodynamic and water quality model. Because the model assumes lateral homogeneity, it is best suited for relatively long and narrow waterbodies ...

  Citation × Citation Citation Abstract Copy Title: CE-QUAL-W2: A Two-dimensional, Laterally Averaged, Hydrodynamic and Water Quality Model, Version 3.1 Author: Cole, Thomas M., Wells, Scott A. Year: 2003 CE-QUAL-W2 is a two-dimensional, longitudinal/vertical, hydrodynamic and water quality model. Because the model assumes lateral homogeneity, it is best suited for relatively long and narrow waterbodies exhibiting longitudinal and vertical water quality gradients. The model has been applied to rivers, lakes, reservoirs, estuaries, and combinations thereof. The application of CE-QUAL-W2 requires knowledge in the following areas: 1. Hydrodynamics 2. Aquatic biology 3. Aquatic chemistry 4. Numerical methods 5. Computers and FORTRAN coding 6. Statistics 7. Data assembly and reconstruction. Water quality modeling is in many ways an art requiring not only knowledge in these areas but also experience in their integration. A word of caution to the first time user - model application is a complicated and time-consuming task. Title: CE-QUAL-W2: A Two-dimensional, Laterally Averaged, Hydrodynamic and Water Quality Model, Version 3.1 Author: Cole, Thomas M., Wells, Scott A. Year: 2003 CE-QUAL-W2 is a two-dimensional, longitudinal/vertical, hydrodynamic and water quality model. Because the model assumes lateral homogeneity, it is best suited for relatively long and narrow waterbodies exhibiting longitudinal and vertical water quality gradients. The model has been applied to rivers, lakes, reservoirs, estuaries, and combinations thereof. The application of CE-QUAL-W2 requires knowledge in the following areas: 1. Hydrodynamics 2. Aquatic biology 3. Aquatic chemistry 4. Numerical methods 5. Computers and FORTRAN coding 6. Statistics 7. Data assembly and reconstruction. Water quality modeling is in many ways an art requiring not only knowledge in these areas but also experience in their integration. A word of caution to the first time user - model application is a complicated and time-consuming task. Close