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• 1. [Article] Emerging infectious disease in lentic environments : the ecology and biogeography of the amphibian chytrid fungus Batrachochytrium dendrobatidis, with perspectives on water quality, limnology, and chemical contaminants

  Biodiversity losses in terrestrial, freshwater, and marine systems are accelerating at a global scale and the most threatened vertebrate taxa are those associated with freshwater habitats. The causes of ...

  Citation × Citation Citation Abstract Copy Title: Emerging infectious disease in lentic environments : the ecology and biogeography of the amphibian chytrid fungus Batrachochytrium dendrobatidis, with perspectives on water quality, limnology, and chemical contaminants Author: Chestnut, Tara Biodiversity losses in terrestrial, freshwater, and marine systems are accelerating at a global scale and the most threatened vertebrate taxa are those associated with freshwater habitats. The causes of biodiversity losses are often complex and include synergistic effects of natural and human-induced stressors, such as habitat loss and fragmentation, urbanization, invasive species, contaminants, global climate change, and emerging infectious diseases. In the last 35 years, the amphibian extinction rate has been estimated to exceed 105 times the baseline expected rate for all species and in the USA, the number of occupied amphibian sites has been reported to be declining by 3.7% per year. Among the many threats to amphibians, the role of disease in population declines has been recognized increasingly over the last two decades. Numerous amphibian diseases have been identified and attributed to mass mortality events. Chytridiomycosis, the emerging infectious disease caused by the amphibian chytrid fungus, Batrachochytrium dendrobatidis (Bd), is implicated as a causal agent in many recent global amphibian population declines and extinctions. To understand the pathology and conservation implications of Bd, a greater understanding of its ecology, life history, and distribution in the wild is of paramount importance. Although it has an impact on the persistence of selected amphibian populations around the world, the full scope of the effects of chytridiomycosis on global amphibian population declines are not well understood. Most Bd research efforts have focused on Bd in amphibian hosts per se, with little attention to understand the environmental associations and dynamics of free-living Bd outside of the amphibian host. In particular, information on Bd responses to climatic variation outside of hosts is a research gap. Furthermore, as a microorganism within an aquatic environment, studies are lacking of potential water quality associations, how Bd may interact with other members of their biological communities, and how Bd responses to chemical contaminants found in aquatic environments. My research begins to fill these gaps by studying the basic ecology of free-living Bd in field settings, and investigating factors that may influence its distribution at a landscape scale, occurrence at a regional scale, and detection at a site scale. Herein, I describe spatial and temporal patterns in the detection and density of free-living Bd in aquatic habitats in two different geographic regions of the United States, Alaska (Chapter 2) and Oregon (Chapter 3). The Alaska work examines Bd ecology at the northernmost extent of amphibian occurrence in North America, where climate associations may be particularly relevant and where Bd occurrence may be representative of one of the most novel pathogen-host systems in the world. I also describe (Chapter 2) experimental results of Bd and amphibian response to extreme cold temperatures they may experience in continental settings, at high elevations, and at high latitudes. My Oregon studies (Chapter 3) focus on multivariate associations of free-living Bd occurrences with a suite of aquatic environmental factors, both abiotic and biotic in nature. In Chapter 4, I describe how amphibians and Bd respond to agricultural chemicals (fungicides) that they may be exposed to in field settings. These results are specific to Bd, but might also warrant consideration as fungicidal treatments for a newly described chytrid affecting salamanders; both of these amphibian chytrids have been detected in captive animals and solutions to treat trade animals for the pathogen are gaining relevancy. Finally, in Chapter 5, I reflect upon the journey of conservation biologists and herpetologists for 25 years of amphibian decline research, with global losses becoming widely recognized in 1989. In this context, my research significantly advances understanding of the geographic distribution and ecology of one potential threat factor to amphibian populations on Earth, Batrachochytrium dendrobatidis. The factors that I report to both promote or limit free-living Bd distribution and abundance will further inform pathogen dynamics research. Title: Emerging infectious disease in lentic environments : the ecology and biogeography of the amphibian chytrid fungus Batrachochytrium dendrobatidis, with perspectives on water quality, limnology, and chemical contaminants Author: Chestnut, Tara Biodiversity losses in terrestrial, freshwater, and marine systems are accelerating at a global scale and the most threatened vertebrate taxa are those associated with freshwater habitats. The causes of biodiversity losses are often complex and include synergistic effects of natural and human-induced stressors, such as habitat loss and fragmentation, urbanization, invasive species, contaminants, global climate change, and emerging infectious diseases. In the last 35 years, the amphibian extinction rate has been estimated to exceed 105 times the baseline expected rate for all species and in the USA, the number of occupied amphibian sites has been reported to be declining by 3.7% per year. Among the many threats to amphibians, the role of disease in population declines has been recognized increasingly over the last two decades. Numerous amphibian diseases have been identified and attributed to mass mortality events. Chytridiomycosis, the emerging infectious disease caused by the amphibian chytrid fungus, Batrachochytrium dendrobatidis (Bd), is implicated as a causal agent in many recent global amphibian population declines and extinctions. To understand the pathology and conservation implications of Bd, a greater understanding of its ecology, life history, and distribution in the wild is of paramount importance. Although it has an impact on the persistence of selected amphibian populations around the world, the full scope of the effects of chytridiomycosis on global amphibian population declines are not well understood. Most Bd research efforts have focused on Bd in amphibian hosts per se, with little attention to understand the environmental associations and dynamics of free-living Bd outside of the amphibian host. In particular, information on Bd responses to climatic variation outside of hosts is a research gap. Furthermore, as a microorganism within an aquatic environment, studies are lacking of potential water quality associations, how Bd may interact with other members of their biological communities, and how Bd responses to chemical contaminants found in aquatic environments. My research begins to fill these gaps by studying the basic ecology of free-living Bd in field settings, and investigating factors that may influence its distribution at a landscape scale, occurrence at a regional scale, and detection at a site scale. Herein, I describe spatial and temporal patterns in the detection and density of free-living Bd in aquatic habitats in two different geographic regions of the United States, Alaska (Chapter 2) and Oregon (Chapter 3). The Alaska work examines Bd ecology at the northernmost extent of amphibian occurrence in North America, where climate associations may be particularly relevant and where Bd occurrence may be representative of one of the most novel pathogen-host systems in the world. I also describe (Chapter 2) experimental results of Bd and amphibian response to extreme cold temperatures they may experience in continental settings, at high elevations, and at high latitudes. My Oregon studies (Chapter 3) focus on multivariate associations of free-living Bd occurrences with a suite of aquatic environmental factors, both abiotic and biotic in nature. In Chapter 4, I describe how amphibians and Bd respond to agricultural chemicals (fungicides) that they may be exposed to in field settings. These results are specific to Bd, but might also warrant consideration as fungicidal treatments for a newly described chytrid affecting salamanders; both of these amphibian chytrids have been detected in captive animals and solutions to treat trade animals for the pathogen are gaining relevancy. Finally, in Chapter 5, I reflect upon the journey of conservation biologists and herpetologists for 25 years of amphibian decline research, with global losses becoming widely recognized in 1989. In this context, my research significantly advances understanding of the geographic distribution and ecology of one potential threat factor to amphibian populations on Earth, Batrachochytrium dendrobatidis. The factors that I report to both promote or limit free-living Bd distribution and abundance will further inform pathogen dynamics research. Close