Search

Search Results

• 21. [Article] Lake Whatcom Model calibration with variable stoichiometry in sediments - REVISED

  This memorandum discusses model calibration and enhancements made to the Lake Whatcom water quality model. Model development and initial calibration were documented in the report “Lake Whatcom Water Quality ...

  Citation × Citation Citation Abstract Copy Title: Lake Whatcom Model calibration with variable stoichiometry in sediments - REVISED Author: Berger, Chris, Wells, Scott A. Year: 2007 This memorandum discusses model calibration and enhancements made to the Lake Whatcom water quality model. Model development and initial calibration were documented in the report “Lake Whatcom Water Quality Model” (Berger and Wells, 2005). The Lake Whatcom water quality model has been converted from CE-QUAL-W2 version 3.2 to version 3.5 (Cole and Wells, 2006). Title: Lake Whatcom Model calibration with variable stoichiometry in sediments - REVISED Author: Berger, Chris, Wells, Scott A. Year: 2007 This memorandum discusses model calibration and enhancements made to the Lake Whatcom water quality model. Model development and initial calibration were documented in the report “Lake Whatcom Water Quality Model” (Berger and Wells, 2005). The Lake Whatcom water quality model has been converted from CE-QUAL-W2 version 3.2 to version 3.5 (Cole and Wells, 2006). Close

• 22. [Article] Spokane River in Idaho and Washington TMDL Water Quality and Hydrodynamic Modeling Quality Assurance Project Plan -- DRAFT

  The focus of this present study is to perform the following tasks: • Converting the Upper Spokane River CE‐QUAL‐W2 models (Washington and Idaho) to version 3.6 • Combining the Washington and Idaho models • ...

  Citation × Citation Citation Abstract Copy Title: Spokane River in Idaho and Washington TMDL Water Quality and Hydrodynamic Modeling Quality Assurance Project Plan -- DRAFT Author: Wells, Scott A., Berger, Chris Year: 2009 The focus of this present study is to perform the following tasks: • Converting the Upper Spokane River CE‐QUAL‐W2 models (Washington and Idaho) to version 3.6 • Combining the Washington and Idaho models • Reviewing and updating model boundary conditions • Check model calibration • Meet with stakeholders • Develop and Run Modeling Scenarios • Create reports on calibration and scenario runs Title: Spokane River in Idaho and Washington TMDL Water Quality and Hydrodynamic Modeling Quality Assurance Project Plan -- DRAFT Author: Wells, Scott A., Berger, Chris Year: 2009 The focus of this present study is to perform the following tasks: • Converting the Upper Spokane River CE‐QUAL‐W2 models (Washington and Idaho) to version 3.6 • Combining the Washington and Idaho models • Reviewing and updating model boundary conditions • Check model calibration • Meet with stakeholders • Develop and Run Modeling Scenarios • Create reports on calibration and scenario runs Close

• 23. [Article] Exploring, Exploiting and Evolving Diversity of Aquatic Ecosystem Models: a Community Perspective

  Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ...

  Citation × Citation Citation Abstract Copy Title: Exploring, Exploiting and Evolving Diversity of Aquatic Ecosystem Models: a Community Perspective Author: Janssen, Annette B.G., Arhonditsis, George B., Beusen, Arthur, Bolding, Karsten, Bruce, Louise, Bruggeman, Jorn, Couture, Raoul-Marie, Downing, Andrea S., Elliott, J. Alex, Frassl, Marieke A., Gal, Gideon, Gerla, Daan J., Hipsey, Matthew R., Hu, Fenjuan, Ives, Stephen C., Janse, Jan H., Jeppesen, Erik, Jöhnk, Klaus D., Kneis, David, Kong, Xiangzhen, Kuiper, Jan J., Lehmann, Moritz K., Lemmen, Carsten, Özkundakci, Deniz, Petzoldt, Thomas, Rinke, Karsten, Robson, Barbara J., Sachse, René, Schep, Sebastiaan A., Schmid, Martin, Scholten, Huub, Teurlincx, Sven, Trolle, Dennis, Troost, Tineke A., Van Dam, Anne A., Van Gerven, Luuk P.A., Weijerman, Mariska, Wells, Scott A., Mooij, Wolf M. Year: 2015 Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality management. In this spirit, numerous models have been developed since the 1970s. We set off to explore model diversity by making an inventory among 42 aquatic ecosystem modellers, by categorizing the resulting set of models and by analysing them for diversity. We then focus on how to exploit model diversity by comparing and combining different aspects of existing models. Finally, we discuss how model diversity came about in the past and could evolve in the future. Throughout our study, we use analogies from biodiversity research to analyse and interpret model diversity. We recommend to make models publicly available through open-source policies, to standardize documentation and technical implementation of models, and to compare models through ensemble modelling and interdisciplinary approaches. We end with our perspective on how the field of aquatic ecosystem modelling might develop in the next 5–10 years. To strive for clarity and to improve readability for non-modellers, we include a glossary. Title: Exploring, Exploiting and Evolving Diversity of Aquatic Ecosystem Models: a Community Perspective Author: Janssen, Annette B.G., Arhonditsis, George B., Beusen, Arthur, Bolding, Karsten, Bruce, Louise, Bruggeman, Jorn, Couture, Raoul-Marie, Downing, Andrea S., Elliott, J. Alex, Frassl, Marieke A., Gal, Gideon, Gerla, Daan J., Hipsey, Matthew R., Hu, Fenjuan, Ives, Stephen C., Janse, Jan H., Jeppesen, Erik, Jöhnk, Klaus D., Kneis, David, Kong, Xiangzhen, Kuiper, Jan J., Lehmann, Moritz K., Lemmen, Carsten, Özkundakci, Deniz, Petzoldt, Thomas, Rinke, Karsten, Robson, Barbara J., Sachse, René, Schep, Sebastiaan A., Schmid, Martin, Scholten, Huub, Teurlincx, Sven, Trolle, Dennis, Troost, Tineke A., Van Dam, Anne A., Van Gerven, Luuk P.A., Weijerman, Mariska, Wells, Scott A., Mooij, Wolf M. Year: 2015 Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality management. In this spirit, numerous models have been developed since the 1970s. We set off to explore model diversity by making an inventory among 42 aquatic ecosystem modellers, by categorizing the resulting set of models and by analysing them for diversity. We then focus on how to exploit model diversity by comparing and combining different aspects of existing models. Finally, we discuss how model diversity came about in the past and could evolve in the future. Throughout our study, we use analogies from biodiversity research to analyse and interpret model diversity. We recommend to make models publicly available through open-source policies, to standardize documentation and technical implementation of models, and to compare models through ensemble modelling and interdisciplinary approaches. We end with our perspective on how the field of aquatic ecosystem modelling might develop in the next 5–10 years. To strive for clarity and to improve readability for non-modellers, we include a glossary. Close

• 24. [Article] Filtration Modeling of a Plate-and-Frame Press

  The porosity distribution and filtrate production during cake filtration in a plate-and-frame filter press were simulated mathematically. The model considered filtration that occurs after the filling process, ...

  Citation × Citation Citation Abstract Copy Title: Filtration Modeling of a Plate-and-Frame Press Author: Wells, Scott A. Year: 1998 The porosity distribution and filtrate production during cake filtration in a plate-and-frame filter press were simulated mathematically. The model considered filtration that occurs after the filling process, not filtration that occurs as the suspension fills the cell. Governing equations for the temporal porosity distribution were developed for a plateand- frame press. The governing equations were solved numerically using an alternating-direction-implicit scheme. Appropriate initial and boundary conditions were determined based on characteristics of the plate-and-frame press and of the suspension properties. Predicted porosity and velocity distributions were calculated for assumed constitutive parameters. Title: Filtration Modeling of a Plate-and-Frame Press Author: Wells, Scott A. Year: 1998 The porosity distribution and filtrate production during cake filtration in a plate-and-frame filter press were simulated mathematically. The model considered filtration that occurs after the filling process, not filtration that occurs as the suspension fills the cell. Governing equations for the temporal porosity distribution were developed for a plateand- frame press. The governing equations were solved numerically using an alternating-direction-implicit scheme. Appropriate initial and boundary conditions were determined based on characteristics of the plate-and-frame press and of the suspension properties. Predicted porosity and velocity distributions were calculated for assumed constitutive parameters. Close

• 25. [Article] Gravity Drainage Prior to Cake Filtration

  During the initial stages of a Buchner funnel or specific resistance test, gravity drainage occurs prior to application of the pressure differential. Some allow time for a small cake to form by gravity ...

  Citation × Citation Citation Abstract Copy Title: Gravity Drainage Prior to Cake Filtration Author: Wells, Scott A., Savage, Gregory K. Year: 1998 During the initial stages of a Buchner funnel or specific resistance test, gravity drainage occurs prior to application of the pressure differential. Some allow time for a small cake to form by gravity drainage. Filtrate data from the gravity drainage period can be used to determine constitutive properties of the cake under a hydrostatic pressure gradient. The constitutive properties that define the structure of the cake include the permeability and porosity as functions of the applied stress. Equations governing the drainage rate during a gravity filtration experiment assuming a constant and a non-constant average cake permeability and cake porosity were developed. Numerical solutions were shown predicting the gravity drainage rate given known constitutive relationships. Also, a procedure was shown illustrating how constitutive relationships could be determined using gravity drainage data. Title: Gravity Drainage Prior to Cake Filtration Author: Wells, Scott A., Savage, Gregory K. Year: 1998 During the initial stages of a Buchner funnel or specific resistance test, gravity drainage occurs prior to application of the pressure differential. Some allow time for a small cake to form by gravity drainage. Filtrate data from the gravity drainage period can be used to determine constitutive properties of the cake under a hydrostatic pressure gradient. The constitutive properties that define the structure of the cake include the permeability and porosity as functions of the applied stress. Equations governing the drainage rate during a gravity filtration experiment assuming a constant and a non-constant average cake permeability and cake porosity were developed. Numerical solutions were shown predicting the gravity drainage rate given known constitutive relationships. Also, a procedure was shown illustrating how constitutive relationships could be determined using gravity drainage data. Close

• 26. [Article] Theoretical Basis for the CE-QUAL-W2 River Basin Model

  The primary objective of this research is to integrate a riverine model into the existing W2 code that would provide the capability for modeling entire watersheds. This task was accomplished by the following ...

  Citation × Citation Citation Abstract Copy Title: Theoretical Basis for the CE-QUAL-W2 River Basin Model Author: Wells, Scott A., Cole, Thomas M. Year: 2000 The primary objective of this research is to integrate a riverine model into the existing W2 code that would provide the capability for modeling entire watersheds. This task was accomplished by the following steps: • Formal derivation of governing equations and solution algorithm with general channel slope • Detailed analysis of algorithm for linking branches and smooth implementation of boundary conditions between branches • Algorithm development and changes to basic model code (including branch definitions with slope, slope correction to solution algorithm, transfer of momentum between internal branches) These tasks were performed with the following constraints and initiatives: • Utilize the same solution algorithms as the existing code for hydrodynamics and water quality for the riverine system • Allow momentum transfer between adjacent branches for internal head boundary conditions • Refine the turbulence closure hypothesis for riverine sections Title: Theoretical Basis for the CE-QUAL-W2 River Basin Model Author: Wells, Scott A., Cole, Thomas M. Year: 2000 The primary objective of this research is to integrate a riverine model into the existing W2 code that would provide the capability for modeling entire watersheds. This task was accomplished by the following steps: • Formal derivation of governing equations and solution algorithm with general channel slope • Detailed analysis of algorithm for linking branches and smooth implementation of boundary conditions between branches • Algorithm development and changes to basic model code (including branch definitions with slope, slope correction to solution algorithm, transfer of momentum between internal branches) These tasks were performed with the following constraints and initiatives: • Utilize the same solution algorithms as the existing code for hydrodynamics and water quality for the riverine system • Allow momentum transfer between adjacent branches for internal head boundary conditions • Refine the turbulence closure hypothesis for riverine sections Close

• 27. [Article] Pend Oreille River Model: Model Scenario Simulations

  The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near ...

  Citation × Citation Citation Abstract Copy Title: Pend Oreille River Model: Model Scenario Simulations Author: Annear, Robert Leslie, Berger, Chris, Wells, Scott A. Year: 2007 The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near the historical Lake Pend Oreille outlet and Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) as shown in Figure 1. This management scenario report is an update of a prior report. The management scenarios had to be rerun because of a modeling error made with the outflows rate of Albeni Falls Dam. The new calibration error statistics were compared with the old statistics in Appendix B: Model Calibration Statistics. The model error for vertical profiles was slightly improved while the error for continuous temperature data was approximately the same. Title: Pend Oreille River Model: Model Scenario Simulations Author: Annear, Robert Leslie, Berger, Chris, Wells, Scott A. Year: 2007 The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near the historical Lake Pend Oreille outlet and Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) as shown in Figure 1. This management scenario report is an update of a prior report. The management scenarios had to be rerun because of a modeling error made with the outflows rate of Albeni Falls Dam. The new calibration error statistics were compared with the old statistics in Appendix B: Model Calibration Statistics. The model error for vertical profiles was slightly improved while the error for continuous temperature data was approximately the same. Close

• 28. [Article] Willamette River and Columbia River Waste Load Allocation Model

  A hydrodynamic and water quality model of the Lower Willamette River was developed to evaluate management alternatives designed to improve water quality. The Lower Willamette River is located in Oregon ...

  Citation × Citation Citation Abstract Copy Title: Willamette River and Columbia River Waste Load Allocation Model Author: Berger, Chris, Annear, Robert Leslie, Wells, Scott A. Year: 2002 A hydrodynamic and water quality model of the Lower Willamette River was developed to evaluate management alternatives designed to improve water quality. The Lower Willamette River is located in Oregon and drains a watershed covering 11500 square miles consisting of forested, agricultural, and urban lands. Inflows include treated municipal wastes and industrial effluents along with non-point sources from agricultural, silvicultural and urbanized land. The model was designed to address temperature, dissolved oxygen, algae, pH and bacteria concerns. The Corps of Engineers two-dimensional, laterally averaged, hydrodynamic and water quality model CE-QUAL-W2, Version 3 was applied. CE-QUAL-W2 consists of directly coupled hydrodynamic and water quality transport models and simulates parameters such as temperature, algae concentration, dissolved oxygen concentration, pH, nutrient concentrations and residence time. The model domain covers a total of about 126 river miles, including the Lower Willamette River from its intersection with the Columbia River upstream to Canby Ferry (RM 35.0) and the Columbia River from Bonneville Dam (RM 144.5) to Beaver Army Terminal (River Mile 53.8). Modeling of the Columbia River was necessary to simulate tidal fluctuations and influxes of Columbia River water into the Lower Willamette. Major tributaries and major NPDES point sources were point inflows to the system model. The ability to model multiple water bodies was a feature of CE-QUAL-W2 Version 3 and allows the simulation of river, reservoir or estuary sections with varying bottom slopes separated by dams and other hydraulic structures. The model was calibrated for the summers of 1993, 1994, 1997, 1998, and 1999. Hydrodynamics were calibrated first followed by temperature and water quality. Root mean square error of model water level predictions was generally less than 0.05 m. Because of the short residence time within the model domain, the development of accurate boundary conditions was essential for good model calibration. Title: Willamette River and Columbia River Waste Load Allocation Model Author: Berger, Chris, Annear, Robert Leslie, Wells, Scott A. Year: 2002 A hydrodynamic and water quality model of the Lower Willamette River was developed to evaluate management alternatives designed to improve water quality. The Lower Willamette River is located in Oregon and drains a watershed covering 11500 square miles consisting of forested, agricultural, and urban lands. Inflows include treated municipal wastes and industrial effluents along with non-point sources from agricultural, silvicultural and urbanized land. The model was designed to address temperature, dissolved oxygen, algae, pH and bacteria concerns. The Corps of Engineers two-dimensional, laterally averaged, hydrodynamic and water quality model CE-QUAL-W2, Version 3 was applied. CE-QUAL-W2 consists of directly coupled hydrodynamic and water quality transport models and simulates parameters such as temperature, algae concentration, dissolved oxygen concentration, pH, nutrient concentrations and residence time. The model domain covers a total of about 126 river miles, including the Lower Willamette River from its intersection with the Columbia River upstream to Canby Ferry (RM 35.0) and the Columbia River from Bonneville Dam (RM 144.5) to Beaver Army Terminal (River Mile 53.8). Modeling of the Columbia River was necessary to simulate tidal fluctuations and influxes of Columbia River water into the Lower Willamette. Major tributaries and major NPDES point sources were point inflows to the system model. The ability to model multiple water bodies was a feature of CE-QUAL-W2 Version 3 and allows the simulation of river, reservoir or estuary sections with varying bottom slopes separated by dams and other hydraulic structures. The model was calibrated for the summers of 1993, 1994, 1997, 1998, and 1999. Hydrodynamics were calibrated first followed by temperature and water quality. Root mean square error of model water level predictions was generally less than 0.05 m. Because of the short residence time within the model domain, the development of accurate boundary conditions was essential for good model calibration. Close

• 29. [Article] Modeling the Impact of Water Quality and Food Web Structure on Bull Trout in Two Washington Reservoirs

  Mechanistic models of the hydrodynamics and water quality were developed for Lake Kachess and Lake Keechelus in the Yakima River basin of Eastern Washington. These models were coupled to a fish bioenergetics ...

  Citation × Citation Citation Abstract Copy Title: Modeling the Impact of Water Quality and Food Web Structure on Bull Trout in Two Washington Reservoirs Author: Berger, Chris J., Wells, Scott A. Year: 2017 Mechanistic models of the hydrodynamics and water quality were developed for Lake Kachess and Lake Keechelus in the Yakima River basin of Eastern Washington. These models were coupled to a fish bioenergetics model and used to explore management strategies to improve water quality in the reservoirs affecting kokanee production. The models were also applied to evaluate the impacts of the proposed implementation of the Kachess Drought Relief Pumping Plant (KDRPP) projects. The public domain model, CEQUAL-W2 Version 4 (Cole and Wells, 2016) was adapted to model the reservoirs. CEQUAL-W2 is a 2-dimensional (longitudinal-vertical) hydrodynamic and water quality model capable of predicting water surface, velocity, temperature, nutrients, multiple algae, zooplankton, periphyton, and macrophyte species, fish bioenergetics, sediment diagenesis, dissolved oxygen, pH, alkalinity, multiple CBOD groups, multiple suspended solids groups, multiple generic constituents (such as tracer, bacteria, toxics), and multiple organic matter groups, both dissolved and particulate. The model is set up to predict these state variables at longitudinal segments and vertical layers. Comparisons of field data to model predictions were made for water level, temperature, NH4-N, NO3-N, PO4-P, total N, Total P, total organic carbon, alkalinity, zooplankton, pH, chlorophyll a, and dissolved oxygen at multiple reservoir sites at various depths. Title: Modeling the Impact of Water Quality and Food Web Structure on Bull Trout in Two Washington Reservoirs Author: Berger, Chris J., Wells, Scott A. Year: 2017 Mechanistic models of the hydrodynamics and water quality were developed for Lake Kachess and Lake Keechelus in the Yakima River basin of Eastern Washington. These models were coupled to a fish bioenergetics model and used to explore management strategies to improve water quality in the reservoirs affecting kokanee production. The models were also applied to evaluate the impacts of the proposed implementation of the Kachess Drought Relief Pumping Plant (KDRPP) projects. The public domain model, CEQUAL-W2 Version 4 (Cole and Wells, 2016) was adapted to model the reservoirs. CEQUAL-W2 is a 2-dimensional (longitudinal-vertical) hydrodynamic and water quality model capable of predicting water surface, velocity, temperature, nutrients, multiple algae, zooplankton, periphyton, and macrophyte species, fish bioenergetics, sediment diagenesis, dissolved oxygen, pH, alkalinity, multiple CBOD groups, multiple suspended solids groups, multiple generic constituents (such as tracer, bacteria, toxics), and multiple organic matter groups, both dissolved and particulate. The model is set up to predict these state variables at longitudinal segments and vertical layers. Comparisons of field data to model predictions were made for water level, temperature, NH4-N, NO3-N, PO4-P, total N, Total P, total organic carbon, alkalinity, zooplankton, pH, chlorophyll a, and dissolved oxygen at multiple reservoir sites at various depths. Close

• 30. [Article] Estimation of Surface Water Temperature of the Tigris River System in Iraq

  Monitoring surface water temperatures (Tw) in lakes, rivers, and reservoirs is a key component of environmental management and influences water quality by affecting bio-geo chemical reaction rates, altering ...

  Citation × Citation Citation Abstract Copy Title: Estimation of Surface Water Temperature of the Tigris River System in Iraq Author: Al-Murib, M., Wells, Scott A., Talke, Stefan A. Year: 2017 Monitoring surface water temperatures (Tw) in lakes, rivers, and reservoirs is a key component of environmental management and influences water quality by affecting bio-geo chemical reaction rates, altering the saturation concentration of dissolved oxygen (DO), and influencing the susceptibility of fish to disease. Temperatures in the Tigris River, one of the largest rivers in the Middle East, are influenced by factors such as heat fluxes at the air-water and human activities such as direct discharge of water to the river. However, modeling and management of water temperature is limited by a paucity of in-situ data, which prevents calibration of models. In this study, we infill data gaps by estimating Tw using the thermal bands of both the Landsat 5 TM and Landsat 7 ETM+ sensors. These satellite-based estimates, typically measured once or twice a month with 60-120m resolution, are then used to develop a regression model that relates daily water temperature to daily air temperature and river flow. These estimates are used to define the Tw boundary conditions for a hydrodynamic and water quality model of the Tigris River based on a 2D implementation of the CE-QUAL-W2 (W2) numerical model. Initial results suggest that there is a significant agreement between modeled and remotely estimated data of Tw. Results suggest that short-wave solar radiation is the most important factor that controls seasonal Tw variations. However, anthropogenic influence is observed as a result of return irrigation flows and flows from Tharthar Lake. Title: Estimation of Surface Water Temperature of the Tigris River System in Iraq Author: Al-Murib, M., Wells, Scott A., Talke, Stefan A. Year: 2017 Monitoring surface water temperatures (Tw) in lakes, rivers, and reservoirs is a key component of environmental management and influences water quality by affecting bio-geo chemical reaction rates, altering the saturation concentration of dissolved oxygen (DO), and influencing the susceptibility of fish to disease. Temperatures in the Tigris River, one of the largest rivers in the Middle East, are influenced by factors such as heat fluxes at the air-water and human activities such as direct discharge of water to the river. However, modeling and management of water temperature is limited by a paucity of in-situ data, which prevents calibration of models. In this study, we infill data gaps by estimating Tw using the thermal bands of both the Landsat 5 TM and Landsat 7 ETM+ sensors. These satellite-based estimates, typically measured once or twice a month with 60-120m resolution, are then used to develop a regression model that relates daily water temperature to daily air temperature and river flow. These estimates are used to define the Tw boundary conditions for a hydrodynamic and water quality model of the Tigris River based on a 2D implementation of the CE-QUAL-W2 (W2) numerical model. Initial results suggest that there is a significant agreement between modeled and remotely estimated data of Tw. Results suggest that short-wave solar radiation is the most important factor that controls seasonal Tw variations. However, anthropogenic influence is observed as a result of return irrigation flows and flows from Tharthar Lake. Close